Citrus Sinensis ID: 028546

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC
Secondary Structure (PSIPRED)
ccccccccEEcEEEEccccccHHHHHHHcccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccHHcccHHHHHHcccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHEEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masvsplaKYKLvflgdqsvgktSIITRFmydkfdttyqaTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAnrqsflntSRWIEEVRTERGGDVIIVLVGNktdlvdkrqvsieegdgkaKEFGVMFIETsakagfniKPLFRKIAAalpgmetlsstkqedmvdvnlkptvnssqteqqgggcac
Flexible Loop (DISEMBL)
MASVSPLAKYKLvflgdqsvgktsIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRslipsyirdsSVAVIVYDVAnrqsflntsrwieevrterggdviivlvgnktdlvdkrqvsieegdgkakeFGVMFIETsakagfniKPLFRKIAAALPGMETLSSTKQEDMVDVNLKptvnssqteqqgggcac
Low Complexity Region (SEG)
MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC
Disordered region (IsUnstruct)
******LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP************************************
Disordered Region (DISOPRED)
*****PL*KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA**********************************GGGCAC
Disordered Region (DISEMBL)
MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTV**************
Disordered Region (DISPRO)
**SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9LFT9	207	Ras-related protein RABH1	yes	no	1.0	1.0	0.932	1e-111
Q9SID8	207	Ras-related protein RABH1	no	no	1.0	1.0	0.908	1e-109
O80501	208	Ras-related protein RABH1	no	no	1.0	0.995	0.875	1e-104
Q9SMR4	214	Ras-related protein RABH1	no	no	0.946	0.915	0.838	1e-91
Q9LV79	206	Ras-related protein RABH1	no	no	0.956	0.961	0.783	2e-86
Q5RAV6	208	Ras-related protein Rab-6	yes	no	0.966	0.961	0.733	3e-85
P20340	208	Ras-related protein Rab-6	yes	no	0.966	0.961	0.733	3e-85
Q9WVB1	208	Ras-related protein Rab-6	yes	no	0.966	0.961	0.733	4e-85
P35279	208	Ras-related protein Rab-6	yes	no	0.966	0.961	0.733	4e-85
Q1KME6	208	Ras-related protein Rab-6	yes	no	0.966	0.961	0.724	8e-85

>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1

 Score =  399 bits (1025), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/207 (93%), Positives = 201/207 (97%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIE+VRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD KA+++GV+FIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLK + NS+Q EQQ GGCAC
Sbjct: 181 QEDMVDVNLKTSSNSAQGEQQRGGCAC 207

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3 SV=1

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/207 (90%), Positives = 197/207 (95%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVANR SFLNTS+WIEEVR ER GDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGD K +E+GVMFIETSAKAGFNIKPLFRKIAAALPGME+ S+TK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
            EDMVDVNLKPT NSSQ +QQGG C+C
Sbjct: 181 NEDMVDVNLKPTSNSSQGDQQGGACSC 207

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1

 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/208 (87%), Positives = 193/208 (92%), Gaps = 1/208 (0%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT++WI+EVRTERG DVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEE + KA+E  VMFIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPT-VNSSQTEQQGGGCAC 207
           QEDMVDVNLK +  N+S  +QQ GGC+C
Sbjct: 181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Binds GTP and GDP and possesses intrinsic GTPase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1

 Score =  335 bits (860), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 166/198 (83%), Positives = 182/198 (91%), Gaps = 2/198 (1%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MASVSPLAK+KLVFLGDQSVGKTSIITRFMYDKFDTTYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVL 119
           QLWDTAGQERFRSLIPSYIRDSSVA++VYDV+NRQ+FLNTS+WIE+V  ERG  +VIIVL
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-S 178
           VGNKTDLV+KRQVSI EG+ K KE+GVMFIETSAK  FNIK LFRKIAAALPG+++ S +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180

Query: 179 TKQEDMVDVNLKPTVNSS 196
           TK +DMVDVNLK T NSS
Sbjct: 181 TKSDDMVDVNLKTTSNSS 198

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV79|RAH1A_ARATH Ras-related protein RABH1a OS=Arabidopsis thaliana GN=RABH1A PE=2 SV=1

 Score =  317 bits (813), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/199 (78%), Positives = 173/199 (86%), Gaps = 1/199 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLVFLGDQ VGKTSIIT FMY KFDT+YQATIGIDFLSKT   EDRT RLQLWDTAGQE
Sbjct: 8   YKLVFLGDQGVGKTSIITCFMYGKFDTSYQATIGIDFLSKTTRYEDRTFRLQLWDTAGQE 67

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF+SL+PSYIRDSSVAVIVYDVA++QSF+NTS+WIEEVR ERG  VIIVLVGNKTDLV+K
Sbjct: 68  RFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNKTDLVNK 127

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNL 189
           RQVSIEEG+ KA+EFG +F+ETSAKAGFNIKPLF KI +AL G E +S TKQED+VDVNL
Sbjct: 128 RQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQEDLVDVNL 187

Query: 190 KPTVNSSQ-TEQQGGGCAC 207
           KP + SSQ   QQ   C+C
Sbjct: 188 KPLMFSSQANHQQESNCSC 206

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3

 Score =  314 bits (804), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 173/203 (85%), Gaps = 3/203 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+       +E   GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Pongo abelii (taxid: 9601)

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3

 Score =  314 bits (804), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 173/203 (85%), Gaps = 3/203 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+       +E   GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2

 Score =  313 bits (803), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 172/203 (84%), Gaps = 3/203 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+        E   GGC+C
Sbjct: 189 IDIKLEKPQEQPVNE---GGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Rattus norvegicus (taxid: 10116)

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4

 Score =  313 bits (803), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 172/203 (84%), Gaps = 3/203 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+        E   GGC+C
Sbjct: 189 IDIKLEKPQEQPVNE---GGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Mus musculus (taxid: 10090)

>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3

 Score =  312 bits (800), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 172/203 (84%), Gaps = 3/203 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDM 188

Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+       +E   GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224083679	207	predicted protein [Populus trichocarpa]	1.0	1.0	0.971	1e-115
255580884	207	protein with unknown function [Ricinus c	1.0	1.0	0.961	1e-114
356512701	207	PREDICTED: ras-related protein RABH1e-li	1.0	1.0	0.951	1e-113
356525473	207	PREDICTED: ras-related protein RABH1e-li	1.0	1.0	0.942	1e-112
449451431	207	PREDICTED: ras-related protein RABH1e-li	1.0	1.0	0.932	1e-112
116785433	207	unknown [Picea sitchensis]	1.0	1.0	0.942	1e-111
359497196	207	PREDICTED: ras-related protein RABH1e-li	1.0	1.0	0.942	1e-111
356567704	207	PREDICTED: ras-related protein RABH1e-li	1.0	1.0	0.927	1e-110
297807057	207	hypothetical protein ARALYDRAFT_487852 [	1.0	1.0	0.932	1e-109
145357850	207	RAB GTPase H1E [Arabidopsis thaliana] gi	1.0	1.0	0.932	1e-109

>gi|224083679|ref|XP_002307084.1| predicted protein [Populus trichocarpa] gi|222856533|gb|EEE94080.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/207 (97%), Positives = 206/207 (99%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIEEVRTERGGDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEEVRTERGGDVIVVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGDGKA+EFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDGKAREFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKPTVNSSQ EQQGGGCAC
Sbjct: 181 QEDMVDVNLKPTVNSSQAEQQGGGCAC 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580884|ref|XP_002531261.1| protein with unknown function [Ricinus communis] gi|223529146|gb|EEF31125.1| protein with unknown function [Ricinus communis]

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/207 (96%), Positives = 204/207 (98%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIEEVRTERG DVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD KAKEFGVMFIETSAKAGFNIKPLFRKIA+ALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKAKEFGVMFIETSAKAGFNIKPLFRKIASALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKP+VNSSQ EQQGGGCAC
Sbjct: 181 QEDMVDVNLKPSVNSSQNEQQGGGCAC 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512701|ref|XP_003525055.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/207 (95%), Positives = 205/207 (99%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT++W+EEVRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD K++EFG+MFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKPTVNSSQTEQQGGGC+C
Sbjct: 181 QEDMVDVNLKPTVNSSQTEQQGGGCSC 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525473|ref|XP_003531349.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/207 (94%), Positives = 205/207 (99%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT++W+EEVRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTNKWVEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGD K++EFG+MFIETSAKAGFNIKPLFRKIAAALPGME+LSSTK
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSREFGIMFIETSAKAGFNIKPLFRKIAAALPGMESLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKPTVNSSQTEQQGGGC+C
Sbjct: 181 QEDMVDVNLKPTVNSSQTEQQGGGCSC 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451431|ref|XP_004143465.1| PREDICTED: ras-related protein RABH1e-like [Cucumis sativus] gi|449496434|ref|XP_004160133.1| PREDICTED: ras-related protein RABH1e-like [Cucumis sativus]

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/207 (93%), Positives = 204/207 (98%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDV+NRQSFLNT++WIEEVRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVSNRQSFLNTTKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGD K++EFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST+
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSREFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTR 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKP VNSSQ+EQQGGGCAC
Sbjct: 181 QEDMVDVNLKPAVNSSQSEQQGGGCAC 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116785433|gb|ABK23720.1| unknown [Picea sitchensis]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/207 (94%), Positives = 201/207 (97%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIV+DVANRQSFLNT+RWIEEVRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD KA+EFGVMFIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKPTVNSSQ EQ+ GGC+C
Sbjct: 181 QEDMVDVNLKPTVNSSQAEQKAGGCSC 207

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497196|ref|XP_002271220.2| PREDICTED: ras-related protein RABH1e-like [Vitis vinifera]

 Score =  405 bits (1042), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/207 (94%), Positives = 202/207 (97%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MAVVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDATYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDV NRQSFLNTS+WIEEVRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVGNRQSFLNTSKWIEEVRTERGTDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD K+++FGVMFIETSAKAGFNIKPLFRKIA+ALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDTKSRDFGVMFIETSAKAGFNIKPLFRKIASALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKP+VNSSQTEQQGGGCAC
Sbjct: 181 QEDMVDVNLKPSVNSSQTEQQGGGCAC 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567704|ref|XP_003552057.1| PREDICTED: ras-related protein RABH1e-like [Glycine max]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/207 (92%), Positives = 201/207 (97%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA+VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFD  YQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDINYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVANRQSFLNT++WIEEVRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRQSFLNTNKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLV+KRQVSIEEGD K++E G+MFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVEKRQVSIEEGDAKSRESGIMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLKPTVNSSQ EQQGGGC+C
Sbjct: 181 QEDMVDVNLKPTVNSSQAEQQGGGCSC 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807057|ref|XP_002871412.1| hypothetical protein ARALYDRAFT_487852 [Arabidopsis lyrata subsp. lyrata] gi|297317249|gb|EFH47671.1| hypothetical protein ARALYDRAFT_487852 [Arabidopsis lyrata subsp. lyrata]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/207 (93%), Positives = 201/207 (97%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIE+VRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD KA+++GV+FIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLK + NSSQ EQQ GGC+C
Sbjct: 181 QEDMVDVNLKTSTNSSQGEQQRGGCSC 207

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145357850|ref|NP_196588.3| RAB GTPase H1E [Arabidopsis thaliana] gi|75334962|sp|Q9LFT9.1|RAH1E_ARATH RecName: Full=Ras-related protein RABH1e; Short=AtRABH1e gi|8953407|emb|CAB96682.1| GTP-binding protein [Arabidopsis thaliana] gi|332004131|gb|AED91514.1| RAB GTPase H1E [Arabidopsis thaliana]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/207 (93%), Positives = 201/207 (97%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIE+VRTERG DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNKTDLVDKRQVSIEEGD KA+++GV+FIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           QEDMVDVNLK + NS+Q EQQ GGCAC
Sbjct: 181 QEDMVDVNLKTSSNSAQGEQQRGGCAC 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2145392	207	RABH1e "RAB GTPase homolog H1E	1.0	1.0	0.932	1.7e-98
TAIR|locus:2060415	207	RABH1d "RAB GTPase homolog H1D	1.0	1.0	0.908	1.1e-96
TAIR|locus:2042321	208	RAB6A [Arabidopsis thaliana (t	1.0	0.995	0.875	8.1e-92
TAIR|locus:2140045	214	RABH1c "RAB GTPase homolog H1C	1.0	0.967	0.817	7.7e-87
FB|FBgn0015797	208	Rab6 "Rab6" [Drosophila melano	0.971	0.966	0.743	1.6e-77
UNIPROTKB|P20340	208	RAB6A "Ras-related protein Rab	0.966	0.961	0.733	2.1e-77
UNIPROTKB|Q5RAV6	208	RAB6A "Ras-related protein Rab	0.966	0.961	0.733	2.1e-77
MGI|MGI:894313	208	Rab6a "RAB6A, member RAS oncog	0.966	0.961	0.733	2.7e-77
RGD|619737	208	Rab6a "RAB6A, member RAS oncog	0.966	0.961	0.733	2.7e-77
ZFIN|ZDB-GENE-050809-136	258	rab6ba "RAB6B, member RAS onco	0.966	0.775	0.724	5.5e-77

TAIR|locus:2145392 RABH1e "RAB GTPase homolog H1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 193/207 (93%), Positives = 201/207 (97%)

Query:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
             MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
             QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS+WIE+VRTERG DVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query:   121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
             GNKTDLVDKRQVSIEEGD KA+++GV+FIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct:   121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180

Query:   181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
             QEDMVDVNLK + NS+Q EQQ GGCAC
Sbjct:   181 QEDMVDVNLKTSSNSAQGEQQRGGCAC 207

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2060415 RABH1d "RAB GTPase homolog H1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 188/207 (90%), Positives = 197/207 (95%)

Query:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
             MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
             QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVANR SFLNTS+WIEEVR ER GDVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query:   121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
             GNKTDLV+KRQVSIEEGD K +E+GVMFIETSAKAGFNIKPLFRKIAAALPGME+ S+TK
Sbjct:   121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180

Query:   181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
              EDMVDVNLKPT NSSQ +QQGG C+C
Sbjct:   181 NEDMVDVNLKPTSNSSQGDQQGGACSC 207

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2042321 RAB6A [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 182/208 (87%), Positives = 193/208 (92%)

Query:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
             QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA+RQSFLNT++WI+EVRTERG DVI+VLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query:   121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
             GNKTDLVDKRQVSIEE + KA+E  VMFIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct:   121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180

Query:   181 QEDMVDVNLKPT-VNSSQTEQQGGGCAC 207
             QEDMVDVNLK +  N+S  +QQ GGC+C
Sbjct:   181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0032940 "secretion by cell" evidence=IGI

TAIR|locus:2140045 RABH1c "RAB GTPase homolog H1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 175/214 (81%), Positives = 192/214 (89%)

Query:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
             MASVSPLAK+KLVFLGDQSVGKTSIITRFMYDKFDTTYQ TIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVL 119
             QLWDTAGQERFRSLIPSYIRDSSVA++VYDV+NRQ+FLNTS+WIE+V  ERG  +VIIVL
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query:   120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-S 178
             VGNKTDLV+KRQVSI EG+ K KE+GVMFIETSAK  FNIK LFRKIAAALPG+++ S +
Sbjct:   121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180

Query:   179 TKQEDMVDVNLKPTVNSSQTEQQGG-----GCAC 207
             TK +DMVDVNLK T NSSQ EQQGG     GC+C
Sbjct:   181 TKSDDMVDVNLKTTSNSSQGEQQGGAGGGGGCSC 214

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

FB|FBgn0015797 Rab6 "Rab6" [Drosophila melanogaster (taxid:7227)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 151/203 (74%), Positives = 174/203 (85%)

Query:     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct:     8 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 67

Query:    65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
             TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKT
Sbjct:    68 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 127

Query:   125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
             DL DKRQVS EEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGM++  +   EDM
Sbjct:   128 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMDSTENKPSEDM 187

Query:   185 VDVNLKPTVNSSQTEQQGGGCAC 207
              +V LK + N  +T+   GGCAC
Sbjct:   188 QEVVLKDSPN--ETKDPEGGCAC 208

GO:0003924 "GTPase activity" evidence=ISS

GO:0001745 "compound eye morphogenesis" evidence=IGI

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007293 "germarium-derived egg chamber formation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0045451 "pole plasm oskar mRNA localization" evidence=IMP

GO:0006887 "exocytosis" evidence=IMP

GO:0031982 "vesicle" evidence=ISS

GO:0045467 "R7 cell development" evidence=IMP

GO:0060078 "regulation of postsynaptic membrane potential" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

UNIPROTKB|P20340 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 149/203 (73%), Positives = 173/203 (85%)

Query:     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct:     9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query:    65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
             TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct:    69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query:   125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
             DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct:   129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query:   185 VDVNLKPTVNSSQTEQQGGGCAC 207
             +D+ L+       +E   GGC+C
Sbjct:   189 IDIKLEKPQEQPVSE---GGCSC 208

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000042 "protein targeting to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0034067 "protein localization to Golgi apparatus" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0072385 "minus-end-directed organelle transport along microtubule" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|Q5RAV6 RAB6A "Ras-related protein Rab-6A" [Pongo abelii (taxid:9601)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 149/203 (73%), Positives = 173/203 (85%)

Query:     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct:     9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query:    65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
             TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct:    69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query:   125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
             DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct:   129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query:   185 VDVNLKPTVNSSQTEQQGGGCAC 207
             +D+ L+       +E   GGC+C
Sbjct:   189 IDIKLEKPQEQPVSE---GGCSC 208

GO:0000042 "protein targeting to Golgi" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

MGI|MGI:894313 Rab6a "RAB6A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 149/203 (73%), Positives = 172/203 (84%)

Query:     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct:     9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query:    65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
             TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct:    69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query:   125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
             DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct:   129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query:   185 VDVNLKPTVNSSQTEQQGGGCAC 207
             +D+ L+        E   GGC+C
Sbjct:   189 IDIKLEKPQEQPVNE---GGCSC 208

GO:0000042 "protein targeting to Golgi" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0018125 "peptidyl-cysteine methylation" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032781 "positive regulation of ATPase activity" evidence=ISO

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

RGD|619737 Rab6a "RAB6A, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 149/203 (73%), Positives = 172/203 (84%)

Query:     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct:     9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query:    65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
             TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct:    69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query:   125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
             DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct:   129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188

Query:   185 VDVNLKPTVNSSQTEQQGGGCAC 207
             +D+ L+        E   GGC+C
Sbjct:   189 IDIKLEKPQEQPVNE---GGCSC 208

GO:0000042 "protein targeting to Golgi" evidence=ISO;ISS

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001671 "ATPase activator activity" evidence=IMP;IDA

GO:0003924 "GTPase activity" evidence=ISO;ISS;TAS

GO:0005525 "GTP binding" evidence=IEA;ISO;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISO;ISS;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO;ISS;TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO;IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0032482 "Rab protein signal transduction" evidence=IC

GO:0032781 "positive regulation of ATPase activity" evidence=IDA

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO

GO:0048193 "Golgi vesicle transport" evidence=TAS

GO:0051117 "ATPase binding" evidence=IPI

ZFIN|ZDB-GENE-050809-136 rab6ba "RAB6B, member RAS oncogene family a" [Danio rerio (taxid:7955)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 147/203 (72%), Positives = 172/203 (84%)

Query:     5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct:    59 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 118

Query:    65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
             TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKT
Sbjct:   119 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 178

Query:   125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
             DL DKRQ++IEEG+ +AKE  VMFIETSAK G+N+K LFR++AAALPGME++  T +E M
Sbjct:   179 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAAALPGMESMQETSKEGM 238

Query:   185 VDVNLKPTVNSSQTEQQGGGCAC 207
             +D+ L        TE   GGC+C
Sbjct:   239 IDIKLDKPQEPPTTE---GGCSC 258

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1KME6	RAB6A_CHICK	No assigned EC number	0.7241	0.9661	0.9615	yes	no
P61294	RAB6B_MOUSE	No assigned EC number	0.7093	0.9661	0.9615	no	no
P34213	RAB6A_CAEEL	No assigned EC number	0.7064	0.9516	0.9609	yes	no
P35279	RAB6A_MOUSE	No assigned EC number	0.7339	0.9661	0.9615	yes	no
Q9SID8	RAH1D_ARATH	No assigned EC number	0.9082	1.0	1.0	no	no
A6QR46	RAB6B_BOVIN	No assigned EC number	0.7093	0.9661	0.9615	no	no
O80501	RAH1B_ARATH	No assigned EC number	0.875	1.0	0.9951	no	no
Q55FK2	RAB6_DICDI	No assigned EC number	0.7164	0.9710	0.9663	yes	no
Q5RAV6	RAB6A_PONAB	No assigned EC number	0.7339	0.9661	0.9615	yes	no
P17608	RYH1_SCHPO	No assigned EC number	0.7213	0.9323	0.9601	yes	no
Q9WVB1	RAB6A_RAT	No assigned EC number	0.7339	0.9661	0.9615	yes	no
Q99260	YPT6_YEAST	No assigned EC number	0.6153	0.9710	0.9348	yes	no
P20340	RAB6A_HUMAN	No assigned EC number	0.7339	0.9661	0.9615	yes	no
Q9NRW1	RAB6B_HUMAN	No assigned EC number	0.7093	0.9661	0.9615	no	no
Q9LFT9	RAH1E_ARATH	No assigned EC number	0.9323	1.0	1.0	yes	no
Q9SMR4	RAH1C_ARATH	No assigned EC number	0.8383	0.9468	0.9158	no	no
Q9LV79	RAH1A_ARATH	No assigned EC number	0.7839	0.9565	0.9611	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_V000066 hypothetical protein (207 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-114
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-81
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-80
pfam00071	162	pfam00071, Ras, Ras family	5e-75
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-72
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-70
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-60
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-56
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-55
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-54
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-53
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-52
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-51
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	9e-48
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-47
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	7e-46
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-45
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-45
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-44
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	6e-44
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-43
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-43
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-42
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-41
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-41
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-40
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-40
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-40
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-40
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	2e-39
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-38
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-36
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-36
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-34
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-34
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-34
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-33
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-32
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-32
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-32
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-31
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-29
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	4e-29
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-29
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-28
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-28
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-28
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	6e-28
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-27
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-26
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-26
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	4e-26
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-25
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-25
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-25
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-25
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-24
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-24
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	3e-23
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-22
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-21
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	8e-21
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-20
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-19
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-19
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-19
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	1e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-19
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-18
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	5e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-17
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	7e-16
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-14
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-14
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	4e-13
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	6e-13
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-12
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	6e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-11
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	1e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	7e-08
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	2e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	4e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	9e-06
cd00880	161	cd00880, Era_like, E	2e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	5e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	9e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	2e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	2e-04
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-04
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	2e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	5e-04
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	5e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.001
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.001
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.001
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.002
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.002
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	0.002
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.003
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	0.003
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.003
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.004

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  323 bits (829), Expect = e-114
 Identities = 132/161 (81%), Positives = 144/161 (89%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLGDQSVGKTSIITRFMYD FD  YQATIGIDFLSKTMY++D+TVRLQLWDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRSLIPSYIRDSSVAV+VYD+ NRQSF NT +WI++VR ERG DVIIVLVGNKTDL DK
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           RQVS EEG+ KAKE   MFIETSAKAG N+K LF+KIA AL
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  237 bits (607), Expect = 8e-81
 Identities = 80/158 (50%), Positives = 114/158 (72%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGKTS++ RF+ +KF   Y++TIG+DF SKT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R +  A++VYDV NR+SF N  +W+ E++     ++ I+LVGNK+DL D+
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           RQVS EE    AKE G++F ETSAK G N+   F  +A
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  236 bits (605), Expect = 2e-80
 Identities = 75/158 (47%), Positives = 115/158 (72%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S+++RF   KF   Y++TIG+DF +KT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R +  A++VYD+ NR+SF N   W++E+R     +V+I+LVGNK+DL ++
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           RQVS EE +  A+E G+ F ETSAK   N++  F ++A
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  222 bits (569), Expect = 5e-75
 Identities = 79/161 (49%), Positives = 111/161 (68%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD  VGK+S++ RF  +KF   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR+L P Y R +   ++VYD+ +R SF N  +W+EE+      +V IVLVGNK DL D+R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            VS EEG+  AKE G+ F+ETSAK   N++  F ++A  + 
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  217 bits (553), Expect = 1e-72
 Identities = 110/179 (61%), Positives = 138/179 (77%), Gaps = 4/179 (2%)

Query: 30  MYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY 89
           MYD FD  YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS+ A++VY
Sbjct: 1   MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60

Query: 90  DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFI 149
           D+ NRQSF NT++WI+++  ERG DVII LVGNKTDL D R+V+ EEG  KA+E+  MF 
Sbjct: 61  DITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120

Query: 150 ETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQG-GGCAC 207
           ETSAKAG NIK LF+KIAA LP ++  S++   ++VD+ L  T NS+  ++     C C
Sbjct: 121 ETSAKAGHNIKVLFKKIAAKLPNLDN-SNSNDANVVDIQL--TNNSNANDKNMLSKCMC 176

Length = 176

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  209 bits (535), Expect = 9e-70
 Identities = 78/163 (47%), Positives = 114/163 (69%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV LGD SVGK+SI+ RF+ ++F    ++TIG  FL++T+ L+D TV+ ++WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ER+RSL P Y R ++ A++VYD+ + +SF     W++E++     +++I L GNK DL  
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           KRQVS EE    A E G++F+ETSAK G N+  LF +IA  LP
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  185 bits (472), Expect = 3e-60
 Identities = 65/161 (40%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R++ +KF+  +++T    F  KT+ +  + + L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+ +L P Y RD+  A++VYD+ +  SF    +WI+E++  RG ++ +V+VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R VS  E +  AK  G    ETSAK G  I+ LF  +A  +
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  176 bits (448), Expect = 1e-56
 Identities = 61/157 (38%), Positives = 111/157 (70%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ ++ +T++ Q+WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+  + +F N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  EE    A++ G+ FIETSA  G N++  F+++
Sbjct: 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  173 bits (440), Expect = 2e-55
 Identities = 69/158 (43%), Positives = 107/158 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D F+ ++ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYD+ + +SF N   W+  +      DV  +LVGNK D+ +K
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R VS EEG+  A+E+G+ F+ETSAKA  N++  F  +A
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLA 161

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  170 bits (433), Expect = 2e-54
 Identities = 66/159 (41%), Positives = 100/159 (62%), Gaps = 2/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+S++ RF  D FD    +TIG+DF  KT+ ++ + V+L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDLVD 128
           RFR+L  SY R +   ++VYDV  R +F N   W+ E+ T     D + +LVGNK D  +
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            R+V+ EEG   A++  ++FIETSAK    ++  F ++ 
Sbjct: 121 -REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  166 bits (423), Expect = 8e-53
 Identities = 69/161 (42%), Positives = 105/161 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +TV+LQ+WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   +IVYDV +++SF N  +W++E+      +V  +LVGNK DL DK
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V   E    A E G+ F+ETSAK   N++  F  +A  +
Sbjct: 123 KVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  164 bits (417), Expect = 5e-52
 Identities = 65/158 (41%), Positives = 105/158 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  ++V+LQ+WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+SF   + W+ + RT    D++I+LVGNK DL D 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R+V+  E    A+E G++F+ETSA  G N++  F K A
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  162 bits (413), Expect = 2e-51
 Identities = 67/162 (41%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT ++ RF    F      TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A+I YD+  R SF +   WIEEV      +V+++L+GNK DL ++
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 130 RQVSIEEGDGKAKEFGVMF-IETSAKAGFNIKPLFRKIAAAL 170
           R+V  EE    A+ +G++  +ETSAK   N++  F  +A  L
Sbjct: 124 REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  153 bits (389), Expect = 9e-48
 Identities = 65/158 (41%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG   VGK+++  RF+  +F   Y  TI  D   K + ++  T  L + DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDK 129
           F ++   YIR+    ++VY + +R+SF       E++   +   DV IVLVGNK DL ++
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           RQVS EEG+  A+E+G  F+ETSAK   NI  LF  + 
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLV 157

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  152 bits (387), Expect = 2e-47
 Identities = 61/161 (37%), Positives = 107/161 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+E+ R     ++ I+L+GNK DL  +
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+VS EEG+  A+E G++F+ETSAK   N++  F   A  +
Sbjct: 125 REVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  150 bits (379), Expect = 7e-46
 Identities = 70/162 (43%), Positives = 106/162 (65%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   ++ AT+GI F +K + ++   V+LQ+WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV N+ SF N   W+ E+      DV+I+L+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           +R V  E+G+  AKE+GV F+ETSAK G N++  F  +A  L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  149 bits (378), Expect = 2e-45
 Identities = 66/161 (40%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
           +++L+ +GD +VGK+S++ RF   +F      T+G+DF S+ + +E    ++LQLWDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII-VLVGNKTDL 126
           QERFRS+  SY R+S   ++V+D+ NR+SF +   W+EE R+       + +LVG+K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
             +RQV+ EE +  AK+ G+ +IETSA+ G N++  F  + 
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLT 162

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  147 bits (374), Expect = 2e-45
 Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 6/167 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V LQ+WDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR----TERGGDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV N +SF +   W +E           +   V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 126 LVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIA-AAL 170
           L +KRQVS ++     K  G + + ETSAK   N+   F  IA  AL
Sbjct: 121 LEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLAL 167

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  144 bits (364), Expect = 6e-44
 Identities = 63/157 (40%), Positives = 101/157 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ N +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R VS E G   A + G  F E SAK   N+K +F ++
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVKQVFERL 158

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  145 bits (368), Expect = 6e-44
 Identities = 63/157 (40%), Positives = 109/157 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+  RQ+F N  RW+ E+R     +++I++ GNK+DL   
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V+ E+G   A++ G+ F+ETSA    N++  F+ I
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  144 bits (365), Expect = 1e-43
 Identities = 63/161 (39%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+E+ R     ++ I+L+GNK DL  +
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R VS EEG+  AKE G++F+E SAK   N++  F K AA +
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  143 bits (361), Expect = 4e-43
 Identities = 70/191 (36%), Positives = 112/191 (58%), Gaps = 5/191 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII-VLVGNKTDLVD 128
           RFR++  +Y R +   ++VYDV N +SF+N  RW++E+  E+  D +  VLVGNK D  +
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA--ALPGMETLSSTKQEDMVD 186
           ++ V  E+    A + G+   ETSAK   N++ +F  I         + L+  +Q+   D
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQND 184

Query: 187 VNLKPTVNSSQ 197
           V   P  +  +
Sbjct: 185 VVKLPKNSKRK 195

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  143 bits (363), Expect = 4e-43
 Identities = 74/193 (38%), Positives = 102/193 (52%), Gaps = 18/193 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K+V LGD  VGKT+++ R + D+F   Y  TIG    +KT+    R ++LQLWDTAGQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFL-NTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           E +RSL P Y R ++  +IVYD   R+S    T  W+EE+R     DV I+LVGNK DL 
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124

Query: 128 D------------KRQVSIEEGDGKAKEFGVM---FIETSAKA--GFNIKPLFRKIAAAL 170
           D             R+V +     KA    V     +ETSAK+  G N+  LF+++   L
Sbjct: 125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKL 184

Query: 171 PGMETLSSTKQED 183
                    K E 
Sbjct: 185 LEEIEKLVLKNEL 197

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  142 bits (359), Expect = 1e-42
 Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 9/203 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQ 68
           +K++ +GD  VGKTSII R+++  F   Y+ATIG+DF  K +  +  T VRLQLWD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVIIVLVGNKT 124
           ERF  +   Y + +  A+IV+DV    +F    +W  +    V    G  +  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 125 DLVDKR-QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQE 182
           DL  +R     E+ D   KE G + + ETSAK   NI+   R +   +   +    + + 
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEP 180

Query: 183 DMVDVNLKPTVNSSQTEQQGGGC 205
           D  +V        + T +    C
Sbjct: 181 DEDNVIDL--KQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  138 bits (348), Expect = 1e-41
 Identities = 62/161 (38%), Positives = 98/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ ++   ++LQ+WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF     W+ E+       VI +LVGNK DL ++
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+VS +  +  +    + ++ETSAK   N++ LF  +A  L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  138 bits (348), Expect = 1e-41
 Identities = 59/158 (37%), Positives = 99/158 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I L+GNK DL  +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R V+ EE    A E G++F+E SAK G N++  F + A
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  135 bits (342), Expect = 2e-40
 Identities = 61/156 (39%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++     L + DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
            F ++   Y+R     ++VY + +RQSF    ++ E++ R +   DV IVLVGNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164
           +R VS EEG   A+++G  F+ETSAK   N+   F 
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFY 155

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  134 bits (340), Expect = 3e-40
 Identities = 61/156 (39%), Positives = 90/156 (57%), Gaps = 2/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++     L + DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
            F ++   Y+R     ++VY + +RQSF   +++ E++ R +   DV IVLVGNK DL +
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164
           +R VS EEG   A+++G  F+ETSAK   N+   F 
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFY 157

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  135 bits (341), Expect = 3e-40
 Identities = 64/186 (34%), Positives = 98/186 (52%), Gaps = 7/186 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           K+V LG +SVGKTS++ R+++ +F    YQ TIG  F++K M + +R V L +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV-- 127
           R+ ++   Y R +  A++ YD+ +  SF     W++E++        I L G K+DL+  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEH-CKIYLCGTKSDLIEQ 120

Query: 128 --DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMV 185
               RQV   +    A E      ETS+K G N+  LF+K+A         +    E  V
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSR-ANNQMNTEKGV 179

Query: 186 DVNLKP 191
           D+  K 
Sbjct: 180 DLGQKK 185

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  134 bits (338), Expect = 7e-40
 Identities = 63/161 (39%), Positives = 97/161 (60%), Gaps = 11/161 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT----------VRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ + QSFLN   W+ +++      +  IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160
           +GNK DL D+R+VS  +    A ++G+ + ETSA  G N++
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVE 166

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  132 bits (333), Expect = 2e-39
 Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQ 68
           K++ +G+ +VGK+S+I RF+   F   Y+ TIG+DFL K ++L      VRL LWDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           E F ++  +Y R +   ++V+   +R+SF     W E+V  E  GD+ +VLV  K DL+D
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLD 120

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168
           +  ++ EE +  AK   +    TS K  FN+  LF  +A 
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  130 bits (329), Expect = 3e-38
 Identities = 67/169 (39%), Positives = 95/169 (56%), Gaps = 4/169 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K+V LGD + GKTS+I RF  + F  +Y+ TIG+DF S+ + L     V LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR--TERGGD-VIIVLVGNKTD 125
           +    ++  YI  +    +VYD+ N QSF N   W+  V+   E       +VLVGNKTD
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           L   RQV+ E+    A+E  +  I  SAK G  +   F++IAA L G++
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVK 169

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  129 bits (325), Expect = 5e-38
 Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 2/148 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  +T+ ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  RFR-SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYDV N  SF +   WIEE        +V  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKA 155
           ++ QV  +     A    +   ETSAK 
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKD 150

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  124 bits (313), Expect = 4e-36
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 17/167 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  +  +KF T Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FRSLIP-SYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           +  L P SY   + V ++ + V +  SF N  ++W  E++     +V I+LVG K DL D
Sbjct: 61  YDRLRPLSY-PQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLRD 118

Query: 129 -----------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
                      ++ ++ EEG+  AKE G V ++E SA     +K +F
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  123 bits (310), Expect = 6e-36
 Identities = 61/158 (38%), Positives = 102/158 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           ++L+ +GD  VGKT ++ RF  ++F +++ +TIG+DF  KT+ ++   VR+Q+WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R++++   Y R +    +VYD+++ +S+ +  +W+ +V       V  +L+GNK D   K
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           RQV  E+G+  AKE+G+ F ETSA    NIK  F ++ 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  120 bits (302), Expect = 1e-34
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFDT    TIG++FL+K + ++   V LQ+WDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVIIVLVGNKTDL 126
           FRSL   + R S   ++ + V + QSF N S W +E       +       V++GNK D 
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID- 125

Query: 127 VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
           + +RQVS EE     ++ G   + ETSAK   N+   F
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  119 bits (301), Expect = 2e-34
 Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 5/158 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +G+  VGK+ II R+   +F + Y  TIGID+  K + + ++ VR+  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-----DVIIVLVGNKTD 125
           +  +   + +D+   ++VYDV +RQSF     W++E++ E G      ++++V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R VS +EG   A+  G  + ETSA  G  +  +F
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  120 bits (303), Expect = 2e-34
 Identities = 75/200 (37%), Positives = 112/200 (56%), Gaps = 6/200 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S++  F+    +     TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR-WIEEVRT-ERGGDVIIVLVGNKTDLV 127
           RFR+L  SY R++   ++VYDV  R++F N S  W +EV       D + +LVGNK D  
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQ-EDMVD 186
            +R VS EEG   AKE G +F+E SAK   N++  F ++  AL  ME  S  ++    V 
Sbjct: 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL--ALKIMEVPSLLEEGSTAVK 191

Query: 187 VNLKPTVNSSQTEQQGGGCA 206
            N+       Q    GG C+
Sbjct: 192 RNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  117 bits (295), Expect = 3e-33
 Identities = 61/157 (38%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K + +GD  VGK  I+        ++ Y   +GID+ + T+ L+ R V+LQLWDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           F ++  SY R +   ++VYD+ NR SF    RWI+E+  E    V  +LVGN+  L  KR
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKR 126

Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           QV+ E+    A+  G+ F E S    FNI   F ++A
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  115 bits (289), Expect = 1e-32
 Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 5/164 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYLED--RTVRLQLWDTA 66
           +   +GD +VGK++++  F  D   F   Y  T G D + KT+ + D   +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTD 125
           GQE F  ++ +     +V  +VYDV N  SF N SRWI  VRT   G     VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169
           L D+R+V   +    A+   + F ETSAK G   +  F  +A A
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLARA 165

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  114 bits (288), Expect = 3e-32
 Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 4/163 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD  VGKT++  +   + F  TY  TI  D   K + ++ +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVIIVLVGNKTDLV 127
           + +L   +IR+    ++VY + +R +F    R+   I+ V+ E   DV I++VGNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            +R+VS EEG   A+  G  FIE SAK   N++  F  +  AL
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  114 bits (286), Expect = 3e-32
 Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 3/161 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD SVGKT +I RF  D FD  Y+ATIG+DF  +   +      LQLWDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDK 129
           F+ +  +Y R +   +IV+D+ +  S  +T +W+E+   E     V++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 130 RQVSIEEGDG--KAKEFGVMFIETSAKAGFNIKPLFRKIAA 168
            Q ++ E D    A+E    +   SA  G N++  F ++A+
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  114 bits (287), Expect = 4e-32
 Identities = 57/157 (36%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           F S+  +Y R +   ++VYD+  +++F +  +W++ +      D  ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 131 QVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKI 166
           +++ ++G+  A++  G+ F E SAK  FN+  +F K+
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  112 bits (282), Expect = 2e-31
 Identities = 61/175 (34%), Positives = 91/175 (52%), Gaps = 19/175 (10%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           LV +GD +VGKT ++  +  + F   Y  T+  +  S  + ++ + V L LWDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  RSLIP-SYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL--- 126
             L P SY  D+ V +I + V +  SF N   +W  EV+     +V I+LVG K DL   
Sbjct: 60  DRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRND 117

Query: 127 -------VDKRQ--VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
                    K+Q  V+ E+G   AK  G V ++E SA     ++ +F + I AAL
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL 172

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  106 bits (267), Expect = 2e-29
 Identities = 56/155 (36%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V+L + DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
            + ++  +Y R     ++V+ + + +SF   + + E++ R +   +V ++LVGNK DL D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           KRQVS+EE    A+++GV ++ETSAK   N+  +F
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  106 bits (265), Expect = 4e-29
 Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 2/159 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE-VRTERGGDVIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + N+Q+F +     ++ VR +    V I+LVGNK DL 
Sbjct: 60  EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
            +R+VS  EG   A+E+G  F+ETSAK+   +  LF +I
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  104 bits (262), Expect = 9e-29
 Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 13/164 (7%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           V +G   VGK+S++   +  +          T   D       L+   V+L L DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 70  RF-----RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
            F       L    +R + + ++V D  +R+S  +    I  +R  R   + I+LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLI--LRRLRKEGIPIILVGNKI 116

Query: 125 DLVDKRQVS-IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           DL+++R+V  +   +  AK  GV   E SAK G  +  LF K+ 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  103 bits (260), Expect = 3e-28
 Identities = 62/181 (34%), Positives = 95/181 (52%), Gaps = 18/181 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+   F  +Y  TI   F SK +  + +   L++ DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 71  FRSLIP-SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG------GD--VIIVLVG 121
           + S++P  Y       ++VY V +R+SF       E V+          G   V IVLVG
Sbjct: 62  Y-SILPQKYSIGIHGYILVYSVTSRKSF-------EVVKVIYDKILDMLGKESVPIVLVG 113

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQ 181
           NK+DL  +RQVS EEG   A+ +G  F+E+SAK   N++  F  +   +  +E      Q
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIEKVENPLPPGQ 173

Query: 182 E 182
           +
Sbjct: 174 K 174

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score =  104 bits (262), Expect = 5e-28
 Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 1/158 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LGD  VGK+S+   F    ++ +     G D   +T+ ++     L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLVD 128
               L  S ++     VIVY V +R SF   S    ++R  R   D+ I+LVGNK+DLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
            R+VS++EG   A  F   FIETSA    N+  LF  I
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGI 158

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  102 bits (257), Expect = 6e-28
 Identities = 56/160 (35%), Positives = 89/160 (55%), Gaps = 2/160 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             YKLV +G   VGK+++  +F+   F T Y  TI  D  +K   ++ +  RL + DTAG
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDL 126
           QE F ++   Y+R     ++V+ V +R SF    ++  ++ R +   +  ++LVGNK DL
Sbjct: 60  QEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
             +RQVS EEG   A++  + +IETSAK   N+   F  +
Sbjct: 120 EHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  103 bits (258), Expect = 6e-28
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 5/152 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG   VGK+++  RF+  +F   Y+  +     S+ + ++   V L++ DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLE-SLYSRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 71  F--RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR--TERGGDVIIVLVGNKTDL 126
                 +   +R +   V+VY + +R SF   S+ ++ +R   +R G++ ++LVGNK DL
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADL 119

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN 158
           +  RQVS EEG   A E G +F E SA   + 
Sbjct: 120 LHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  100 bits (251), Expect = 5e-27
 Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
           +F ++   YI++     +VY +  +QSF +     E++ R +   DV ++LVGNK DL D
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 129 KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKI 166
           +R VS EEG   A+++G   F+ETSAK+  N+  +F  +
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDL 159

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 99.2 bits (247), Expect = 2e-26
 Identities = 47/154 (30%), Positives = 84/154 (54%), Gaps = 4/154 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD +VGK+ ++ RF+ D ++    +T  +         E +T+ +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           F+++  SY   +   ++V+DV  + ++ N S+W EE+R  R  ++  ++V NK DL D  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDL-DPS 119

Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR 164
               ++    A++  +     SA  G N+  LF+
Sbjct: 120 VT--QKKFNFAEKHNLPLYYVSAADGTNVVKLFQ 151

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  100 bits (250), Expect = 2e-26
 Identities = 60/174 (34%), Positives = 80/174 (45%), Gaps = 23/174 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED---RTVRLQLWDT 65
           K K+V +GD   GKT ++  +    F   Y  T+   F +    L+    + + L LWDT
Sbjct: 3   KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDT 59

Query: 66  AGQERFRSLIP-SYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK 123
           AGQE +  L P SY  D  V +I Y V N  S  N   +W  EV         IVLVG K
Sbjct: 60  AGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLK 117

Query: 124 TDLVDKRQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFR 164
           TDL   +             V+ E+G+  AK  G V +IE SAK   N+  +F 
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFD 171

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 99.8 bits (249), Expect = 4e-26
 Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 15/183 (8%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           M  +  + ++KL+ +GD  VGKT+ + R +  +F+  Y  T+G++      Y     +  
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
            +WDTAGQE+F  L   Y      A+I++DV +R ++ N   W  ++      ++ IVLV
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDI-VRVCENIPIVLV 119

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEF------GVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           GNK D+ D RQV       KA++        + + + SAK+ +N +  F  +A  L    
Sbjct: 120 GNKVDVKD-RQV-------KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP 171

Query: 175 TLS 177
            L 
Sbjct: 172 NLV 174

Length = 215

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 97.6 bits (243), Expect = 1e-25
 Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 2/159 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+   F   +  TI  D       +++    L + DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKTQARIDNEPALLDILDTAGQA 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
            F ++   Y+R     +I Y V +R SF   S + E + R     D+ +VLVGNK DL  
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           +RQV+ EEG   A+EF   F ETSA   F I   F  + 
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLV 160

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 96.7 bits (241), Expect = 2e-25
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 3/156 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + +R+SF +   + E++ R +   DV +VLVGNK DL 
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL- 118

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
             R VS  +G   AK +G+ +IETSAK    ++  F
Sbjct: 119 AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 97.7 bits (243), Expect = 3e-25
 Identities = 65/217 (29%), Positives = 96/217 (44%), Gaps = 43/217 (19%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE 69
           K+V LGD +VGKTS++ R+M  +F  T  +T+G  F     YL+      + +WDTAG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAF-----YLKQWGPYNISIWDTAGRE 55

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLV- 127
           +F  L   Y R ++  ++ YDV+N QS      R++    T    D +  +VGNK DL  
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTE 114

Query: 128 ------------------DKRQVSIEEGDGKAKEF--------------GVMFIETSAKA 155
                             D+RQV++E+     K                  M  ETSAK 
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 156 GFNIKPLFRKI-AAALPGMETLSSTKQEDMVDVNLKP 191
           G+N+  LF  +    LP +    +        VNL  
Sbjct: 175 GYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPN 211

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  +F+ + F   Y  TI  D   K   +++ T  L + DTAGQ
Sbjct: 5   EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDTAGQ 63

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           E + ++   Y+R     + VY + +R SF   + + E++ R +    V ++LVGNK DL 
Sbjct: 64  EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
            +RQVS  EG   AK FG+ F+ETSAK   N+   F
Sbjct: 124 SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAF 159

Length = 189

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 95.1 bits (237), Expect = 6e-25
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 4/160 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDK-FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            K+V +GD +VGK++++ R + +K   T Y+     ++++  +  + +T +  L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNT-SRWIEEVRTERGGDVIIVLVGNKTDL 126
           E + ++   Y R    ++ V+D+            +  +E+       V I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
            D  ++        AK  G   I  SA+ G NI   F+ +
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 2/156 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           E+F ++   Y+++    V+VY +  + +F +     E++ R +   DV ++LVGNK DL 
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           D+R V  E+G   A+++G  F+ETSAKA  N+  +F
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS+I  +  + + T Y  T   D  S  + ++ + VRLQL DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           F  L P    D+ V ++ + V N  SF N + +WI E+R        I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK-HNPKAPIILVGTQADLRTD 119

Query: 129 -----------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
                      ++ VS       A++ G   +IE SA    N+K +F
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 92.9 bits (231), Expect = 5e-24
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 3/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+ + F  +Y  TI  D   K + ++ R   L++ DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
           +F ++   YI+     ++VY V +  S        E+V R +   +V +VLVGNK DL D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 129 KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
            RQVS E+G   ++++G V F ETSA+   N+  +F
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 90.8 bits (226), Expect = 3e-23
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +F  L   Y      A+I++DV +R ++ N   W  ++      ++ IVL GNK D+ D+
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 119

Query: 130 RQVSIEEGDGKAKEF----GVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           +   ++    K   F     + + E SAK+ +N +  F  +A  L G   L 
Sbjct: 120 K---VKP---KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLE 165

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 90.3 bits (224), Expect = 1e-22
 Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 7/194 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +LVF+G   VGKT++I RF+YD F+  ++ T+  +  SK   +    V + + DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVDK 129
           F ++    I++     +VY V + +SF    R  EE+   +    V IV+VGNK D + +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 130 RQVSIEEGDGKAK-EFGVMFIETSAKAGFNIKPLFRKI--AAALPGM--ETLSSTKQEDM 184
           RQV   +     + ++   F+E SAK   N+  +F+++   A LP      L   ++   
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALRRRRESAP 179

Query: 185 VDVNLKPTVNSSQT 198
            ++  +P +N + +
Sbjct: 180 SEIQRRPPMNKTNS 193

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 90.6 bits (225), Expect = 1e-22
 Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 19/168 (11%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +F  L   Y      A+I++DV  R ++ N   W  ++      ++ IVL GNK D+ + 
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131

Query: 130 RQVSIEEGDGKAKEF------GVMFIETSAKAGFNI-KP---LFRKIA 167
           RQV       KAK+        + + E SAK+ +N  KP   L RK+A
Sbjct: 132 RQV-------KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172

Length = 219

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 89.1 bits (221), Expect = 2e-22
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 18/171 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V LGD + GKTS++  F    F   Y+ T+  +++   ++++   V L LWDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYI-HDIFVDGLAVELSLWDTAGQEE 60

Query: 71  F---RSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDL 126
           F   RSL  SY  D+ V ++ + V N  S  N  S+W+ E+R    G V +VLV  K DL
Sbjct: 61  FDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPG-VKLVLVALKCDL 116

Query: 127 VDKRQV--------SIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAA 168
            + R          S EEG   AK      ++E SAK    +   F + A 
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 85.3 bits (211), Expect = 4e-21
 Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 6/161 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI----IVLVGNKTD 125
           +F ++    I      ++VY + ++QS L   + I E+  E  G+ +    I+LVGNK D
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQS-LEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
               R+VS  EG   A+ +   F+ETSAK   N++ LF+++
Sbjct: 120 ESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQEL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 85.3 bits (211), Expect = 8e-21
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 14/167 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKTS++  F   +F   Y  T+  ++++    ++ + V+L LWDTAGQ
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           E +  L P     + V +I + +    S  N  ++WIEEVR     +V ++LVG K DL 
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLR 118

Query: 128 DK----------RQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
            +            V I++    A+  G   ++E SA  G  +  +F
Sbjct: 119 QEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 81.7 bits (202), Expect = 3e-20
 Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD+  GK+S++++ +  +F        G      T+ ++  T  L +WD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR---WIEEVRTERGGDVIIVLVGNKT 124
            +     +++ +   ++VYD+ +R+S    SR   W+  +R + GG + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 81.6 bits (202), Expect = 1e-19
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 10/162 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQE 69
           KL+ +G   VGKTS+  + + +KFD    +T GI+     +   +R  +RL +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR--WIEEVRTERGGDVIIVLVGNKTDLV 127
            + +    ++   S+ ++V+D+  R     +    W+ +++   GG   ++LVG   D  
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDL--RTGDEVSRVPYWLRQIKA-FGGVSPVILVGTHIDES 119

Query: 128 DKRQVSIEEGDGKAKEFGVM--FIETSAKAGFNIKPLFRKIA 167
                 I +     K   ++      S K G  I  L + IA
Sbjct: 120 CDED--ILKKALNKKFPAIINDIHFVSCKNGKGIAELKKAIA 159

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 81.7 bits (202), Expect = 1e-19
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++  F  D+F   Y  T+  +++   + ++ + V L LWDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDL--- 126
           +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 127 ---------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                    + +  V  EEG   A++ G   ++E SAK    ++ +F
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 82.4 bits (203), Expect = 1e-19
 Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 3/162 (1%)

Query: 15  LGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI 134
              Y      A+I++DV  R ++ N   W  ++      ++ IVL GNK D+ D R+V  
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKD-RKVKA 118

Query: 135 EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 119 KSITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 159

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 81.7 bits (202), Expect = 1e-19
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 6/165 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LGD  +GKTS++ +++  +FD  Y  T+G++F+ KT+ +    +   +WD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL-VDK 129
           F +++P   +D+   + ++D+  + +  +   W  + R       I +LVG K DL  D 
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQAR-GFNKTAIPILVGTKYDLFADL 120

Query: 130 RQVSIEEGDGKAKEFG-VM---FIETSAKAGFNIKPLFRKIAAAL 170
                EE   +A+++   M    I  S     N++ +F+ + A +
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 81.0 bits (200), Expect = 2e-19
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F T Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + ++ S+ N   +WI E+R    G V IVLVG K DL D 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPG-VPIVLVGTKLDLRDD 120

Query: 130 RQ----------VSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLF 163
           +Q          ++  +G+   K+ G   +IE S+K   N+K +F
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LG   VGKT+I++RF+  +F+  Y  TI  DF  K   +     +L + DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR---------TERGGDVIIVLV 120
            F ++    I    V ++V+ + NR+SF    R  E++          T+    + +V+ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 121 GNKTDLVDKRQVSIEEGDG-KAKEFGVMFIETSAKAGFNIKPLFRKIA--AALP 171
           GNK D    R+V  +E +     +    + E SAK   N+  +FR +   A LP
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP 173

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 77.5 bits (191), Expect = 5e-18
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N   +W  EVR     +  I+LVG K DL D 
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 120

Query: 130 RQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 17/169 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD---- 125
           + ++ P    DS   +I +D++  ++  +   +W  EVR E   +  ++LVG K+D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCPNTPVLLVGCKSDLRTD 120

Query: 126 ------LVDKRQ--VSIEEGDGKAKEFG-VMFIETSAKAG-FNIKPLFR 164
                 L +KRQ  VS E+G   AK+ G   ++E SAK    +++ +F 
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 72.0 bits (176), Expect = 7e-16
 Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 22/177 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE- 69
           K V +GD +VGKT ++  +  + F   Y  T+  D  S    ++ RTV L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 70  --RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDL 126
             R R+L  SY + ++V +I + +A+  S+ N   +W  EV      +V I+LVG K DL
Sbjct: 64  YDRLRTL--SYPQ-TNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDL 119

Query: 127 VD--------KRQ----VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAAL 170
            +        K Q    ++ ++G   AK+   V ++E SA     +K +F +   A+
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 16/167 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V +I + V N  SF N    W+ E++ E   +V  +L+G + DL D 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPYLLIGTQIDLRDD 119

Query: 129 -----------KRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      ++ +++E+G   AKE G   ++E SA     +K +F
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 67.2 bits (164), Expect = 3e-14
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+          +LVG + DL D 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK-TPFLLVGTQIDLRDD 120

Query: 129 -----------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
                      ++ ++ E G+  A++   V ++E SA     +K +F + I AAL
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 28/168 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQ-----ATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++V +GD+ VGK+S+I   + ++F           TI  D        E     +   DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTTIV--DT 56

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKT 124
           + + + R+ + + IR ++V  +VY V    +     ++W+  +R   G  V I+LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIR-RLGVKVPIILVGNKS 115

Query: 125 DLVDKRQ-VSIEEGDGKAKEFGVM--------FIETSAKAGFNIKPLF 163
           DL D      +EE     +   +M         +E SAK   N+  +F
Sbjct: 116 DLRDGSSQAGLEE-----EMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +  TT   TIG  F  +T  +  + V+  +WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           E  R L  +Y  ++   + V D A+R         +  +   E   D  ++++ NK DL 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Query: 128 D 128
            
Sbjct: 129 G 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 63.4 bits (155), Expect = 6e-13
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ +    +  TT   TIG  F  +T  +E + V+  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVDK 129
            R L   Y  ++   + V D ++R+        + ++   E      ++++ NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 130 RQVS 133
              S
Sbjct: 116 LTES 119

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 63.5 bits (154), Expect = 2e-12
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 17/178 (9%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + + KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L LWDT+
Sbjct: 11  VVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTS 69

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD 125
           G   + ++ P    DS   ++ +D++  + F +   +W  E+  +      I+L+G KTD
Sbjct: 70  GSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPSTRILLIGCKTD 128

Query: 126 ----------LVDKRQ--VSIEEGDGKAKEFGV-MFIETSA-KAGFNIKPLFRKIAAA 169
                     L +++Q  +S E+G   AK+ G   ++E SA  +  +I  +FR  +  
Sbjct: 129 LRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLL 186

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 61.8 bits (150), Expect = 6e-12
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 30/178 (16%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD----- 64
            ++  LG   VGKT+I+ +F+  +F   Y  T         + L  R   L + D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 65  ----TAGQE----RFRSLIPSYIRDSSVAVIVYDVANRQSF--LNTSRW-IEEVRTERGG 113
               TAGQE    RFR L     R+S   ++VYD+ +  SF  +   R  I E R     
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 114 DVIIVLVGNKTDL-----VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           +  IV+VGNK D        +  +S+       K +   ++E SAK  ++I  LF+++
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVL----VRKSWKCGYLECSAKYNWHILLLFKEL 169

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 5   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 63

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD-- 125
             + ++ P    DS   +I +D++  ++  +   +W  E++ E   +  ++LVG K+D  
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 122

Query: 126 --------LVDKRQ--VSIEEGDGKAKEFGVM-FIETSAKAGFN 158
                   L + RQ  VS ++G   AK+ G   +IE SA    N
Sbjct: 123 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 55/193 (28%), Positives = 77/193 (39%), Gaps = 46/193 (23%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATI-------GID-FLSKTMYLE------- 54
            K V +GD +VGKT +I     +K  T YQ           ID +      LE       
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 55  DRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR-WIEEVRT 109
             +V L+LWDT G      RF     +Y R S V ++ + +A+  S  N    W  E+R 
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPEIR- 115

Query: 110 ERGGDVIIVLVGNKTDL-------------------VDKRQVSIEEGDGKAKEFGVMFIE 150
                V ++LVG K DL                    +   +  E G   AKE G+ + E
Sbjct: 116 HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYE 175

Query: 151 TSAKAGFNIKPLF 163
           TS    F +K +F
Sbjct: 176 TSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 16/162 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D +  +Y  T+  ++ + +  ++   + L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK----TD 125
           + ++ P    DS   +I +D++  ++  +   +W  E + E   +  +VLVG K    TD
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMRTD 120

Query: 126 LVDKRQ--------VSIEEGDGKAKEFG-VMFIETSAKAGFN 158
           L   R+        V+ E+G   A++ G V ++E S++   N
Sbjct: 121 LSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 5/117 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  S GK++++ +  + +  TT   T+G  F  + + LE + + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDL 126
            R++   Y+ ++   V V D ++      + + ++ + + E    V +VL+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 8/149 (5%)

Query: 15  LGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +G Q+ GKT+++      +F      T+G +    T       V +++WD  GQ RFRS+
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK----GNVTIKVWDLGGQPRFRSM 60

Query: 75  IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDLVDKRQVS 133
              Y R  +  V V D A+R+        + ++  +   + I +LV GNK DL     V 
Sbjct: 61  WERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120

Query: 134 --IEEGDGKAK-EFGVMFIETSAKAGFNI 159
             IE+ + K+  +  V     SAK   NI
Sbjct: 121 ELIEQMNLKSITDREVSCYSISAKEKTNI 149

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 6  PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
          P  +YK++ +G  + GKT+I+ +F+  +   T   TIG    S    +  + +R  +WD 
Sbjct: 12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIG----SNVEEIVYKNIRFLMWDI 66

Query: 66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSF 97
           GQE  RS   +Y  ++   ++V D  +R+  
Sbjct: 67 GGQESLRSSWNTYYTNTDAVILVIDSTDRERL 98

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 21/126 (16%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68
           +V LG  S GKT+++ R  +++F  T   T G  F ++ + +     + V    WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
           E+ R L  SY R +   V V D        +  R +EE +TE            V ++++
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSV------DVER-MEEAKTELHKITKFSENQGVPVLVL 115

Query: 121 GNKTDL 126
            NK DL
Sbjct: 116 ANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++V LG    GKT+I+ +   D+F    Q    I F  +T  +E + ++  +WD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF---MQPIPTIGFNVET--VEYKNLKFTIWDVGGKHK 55

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDK 129
            R L   Y  ++   V V D ++R         + ++ TE+   D ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA 115

Query: 130 RQVSIEE 136
             +S+EE
Sbjct: 116 --LSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+VFLG  + GKT+++     D+    +  T+       +  L    V+   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLH----PTSEELTIGNVKFTTFDLGGHEQ 75

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVDK 129
            R +   Y  +    V + D A+ + F  +   ++ +   E   +V I+++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--P 133

Query: 130 RQVSIEE 136
             VS EE
Sbjct: 134 GAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 20/126 (15%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 65

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLVGN 122
            R L   Y   +   + V D A+R         I+E R E           D ++++  N
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQELHRIINDREMRDALLLVFAN 118

Query: 123 KTDLVD 128
           K DL D
Sbjct: 119 KQDLPD 124

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG +  +    +  + +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
            R L   Y  ++   + V D  +R         +  +  E    D +I++  NK DL D
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 21/170 (12%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAG- 67
              G  +VGK+S++   +             T       K   L     V L   DT G 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPV--RKEWELLPLGPVVLI--DTPGL 56

Query: 68  -----QERFRS-LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
                  R R          + + ++V D               ++   R     ++LV 
Sbjct: 57  DEEGGLGRERVEEARQVADRADLVLLVVDSDLTP-----VEEEAKLGLLRERGKPVLLVL 111

Query: 122 NKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIAAAL 170
           NK DLV + +      + K +    +  I  SA  G  I  L +KIA  L
Sbjct: 112 NKIDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKIAELL 161

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 41/185 (22%)

Query: 11  KLVFLGDQSVGKTSIITRFM-------YDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           K+  +G  +VGK+S+I   +        D   TT       D +      + R   L   
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSDIAGTT------RDSIDIEFERDGRKYVL--I 231

Query: 64  DTAG----------QERFRSL--IPSYIRDSSVAVIVYDVAN--RQSFLNTSRWIEEVRT 109
           DTAG           E++     + + I  + V ++V D      +  L  +  IEE   
Sbjct: 232 DTAGIRRKGKITESVEKYSVARTLKA-IERADVVLLVIDATEGISEQDLRIAGLIEE--- 287

Query: 110 ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFIETSAKAGFNIKPLFR 164
             G  ++IV+  NK DLV++ + ++EE   K +           +  SA  G  +  LF 
Sbjct: 288 -AGRGIVIVV--NKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFE 344

Query: 165 KIAAA 169
            I   
Sbjct: 345 AIKEI 349

Length = 444

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 13/174 (7%)

Query: 15  LGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73
           LG +  GK++++  F+   F    Y  TI   +   T+ +  +   L L +    E    
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREVGEDEEAIL 69

Query: 74  LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT--ERGGDVIIVLVGNKTDLVDKRQ 131
           L  + +    VA +VYD ++  SF     +  EV       G++  + V  K DL +++Q
Sbjct: 70  LNDAELAACDVACLVYDSSDPNSF----SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ 125

Query: 132 VSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRKI--AAALPGM---ETLSST 179
            +  + D   ++ G+   +  S++ G +   LF K+  AA  P +   E  S  
Sbjct: 126 RAEVQPDEFCRKLGLPPPLHFSSRLGDSSNELFTKLATAAQYPHLSIPELESGK 179

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 29/145 (20%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDK---FDTTY-QATIGID-----FLSKTMYLEDRTVRLQ 61
           K++ +G +  GK+S+ +  ++      DT    ATI ++     FL          + L 
Sbjct: 1   KVLLMGLRGSGKSSMRSI-IFSNYSPRDTLRLGATIDVEQSHVRFLGN--------LTLN 51

Query: 62  LWDTAGQERFRSLIPSYIRD---SSVAVIVY--DVANRQ---SFLNTSRWIEEVRTERGG 113
           LWD  GQ+ F     +  ++   S+V V++Y  DV +R+         + IE +      
Sbjct: 52  LWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPN 111

Query: 114 DVIIVLVGNKTDLV--DKRQVSIEE 136
             + VL+ +K DL+  D+R+   E+
Sbjct: 112 AKVFVLI-HKMDLLSEDERKEIFED 135

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG-------IDFLSKTMYLEDRTVRLQLW 63
           K++ LGD  VGK+S++     ++       T+G         +   T   E++T  ++LW
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTP--EEKTFYVELW 59

Query: 64  DTAGQ----ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV 107
           D  G     E  +S    +    +  + V+D+ N++S  N  RW  E 
Sbjct: 60  DVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEA 107

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 13  VFLGDQSVGKTSII--TRFMYDKFD-----TTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           + LG  + GKT+ +  T+  + K       +    T+G++       +E    RL  WD 
Sbjct: 3   LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN----IGTIEVGKARLMFWDL 58

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKT 124
            GQE  RSL   Y  +S   + V D  +R+ F  +    E+V   E    V ++++ NK 
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQ 118

Query: 125 DLVDKRQVSIEE 136
           DL D   +S+ E
Sbjct: 119 DLPDA--LSVAE 128

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 102 RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161
             IEE++ ER    I+V+  NK DL         E +   K+FG+  I  SA  G  I  
Sbjct: 105 ELIEELK-ERKIPYIVVI--NKIDLG----EESAELEKLEKKFGLPPIFVSALTGEGIDE 157

Query: 162 LFRKIAAALP 171
           L   I   LP
Sbjct: 158 LKEAIIELLP 167

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 18/135 (13%)

Query: 11  KLVFLGDQSVGKTSIITRFMY------------DKFDTTYQATIGIDFLSKTMYLEDRTV 58
           K+V +G    GKT+ +                          T+ +DF S  +   + T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD--EDTG 69

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV 118
            + L+ T GQERF+ +     R +  A+++ D +   +F   +  I +  T R   + +V
Sbjct: 70  -VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSR-NPIPVV 125

Query: 119 LVGNKTDLVDKRQVS 133
           +  NK DL D     
Sbjct: 126 VAINKQDLFDALPPE 140

Length = 187

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 110 ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169
           E G  V++ L  N  D  +K+ + I+     ++  GV  + TSA+ G  I  L   I   
Sbjct: 103 ELGIPVVVAL--NMMDEAEKKGIKIDI-KKLSELLGVPVVPTSARKGEGIDELKDAIIEV 159

Query: 170 LPG 172
             G
Sbjct: 160 AEG 162

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +F  +   T    T+G  F  KT  LE    +L +WD  GQ+ 
Sbjct: 16  RILMLGLDNAGKTTILKKFNGEDISTI-SPTLG--FNIKT--LEYNGYKLNIWDVGGQKS 70

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDL 126
            RS   +Y   +   + V D ++R    +  R ++++  E    G  +++   NK DL
Sbjct: 71  LRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFA-NKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG +  +    +E + +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 73

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDK 129
            R L   Y +++   + V D  +R   +     +  +  E    D ++++  NK DL + 
Sbjct: 74  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133

Query: 130 RQVS 133
              +
Sbjct: 134 MNAA 137

Length = 181

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 25/128 (19%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF 71
           + LG    GKT++ T+    K  +T  +   I+    + Y    +  +L L D  G E+ 
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTS---IEPNVASFYSNSSKGKKLTLVDVPGHEKL 60

Query: 72  RSLIPSYIRDSSVAVI-VYDVANRQS------------FLNTSRWIEEVRTERGGDVIIV 118
           R  +  Y++ S  A++ V D A  Q               +  +   ++         I+
Sbjct: 61  RDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIP--------IL 112

Query: 119 LVGNKTDL 126
           +  NK DL
Sbjct: 113 IACNKQDL 120

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 29/125 (23%)

Query: 58  VRLQLWDTAG------------QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIE 105
           + ++L DTAG             ER R  I     ++ + ++V D +      +      
Sbjct: 51  IPVRLIDTAGLRETEDEIEKIGIERAREAI----EEADLVLLVVDASEGLDEED------ 100

Query: 106 EVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK 165
               E      +++V NK+DL+   +   E             I  SAK G  I  L   
Sbjct: 101 LEILELPAKKPVIVVLNKSDLLSDAEGISELNGKP-------IIAISAKTGEGIDELKEA 153

Query: 166 IAAAL 170
           +    
Sbjct: 154 LLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 6/117 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG +  +    +E + ++  +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVET----VEYKNLKFTMWDVGGQDK 73

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDL 126
            R L   Y ++++  + V D  +R+   +    +E + +E    D ++++  NK DL
Sbjct: 74  LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 33/153 (21%)

Query: 6   PLAKYKLVFLGDQSVGKTS----IITRFMYDKFDTTYQATIGIDFL---------SKTMY 52
           P  + +++ +GD  VGK+S    I+      +   T   T+G+  +         +    
Sbjct: 18  PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKG 77

Query: 53  LEDRTVRLQLWDTAGQERF---RSLIPSYIRDSSVAVI-VYDVANRQSFLNTSRWIEEVR 108
             +R   ++LWD +G ER+   RSL  S I      VI V+D++ R++  +  +W  EV 
Sbjct: 78  DSERDFFVELWDVSGHERYKDCRSLFYSQIN----GVIFVHDLSQRRTKTSLQKWASEVA 133

Query: 109 TE--------RGG----DVIIVLVGNKTDLVDK 129
                      GG     V  +++GNK D+  K
Sbjct: 134 ATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166

Length = 334

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ + +  +  +    T G +  +    ++    +L +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQ-LASEDISHITPTQGFNIKN----VQADGFKLNVWDIGGQRK 71

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDLVD 128
            R    +Y  ++ V + V D A+R+ F    + + E+  E     + VLV  NK DL+ 
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 110 ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA 169
           E G  V++ L  N  D  +KR + I+  D  ++  GV  + TSA+ G  I  L   IA  
Sbjct: 100 ELGLPVVVAL--NMIDEAEKRGIKIDL-DKLSELLGVPVVPTSARKGEGIDELLDAIAKL 156

Query: 170 LPG 172
              
Sbjct: 157 AES 159

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 20/124 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG  F  +T  +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLVGN 122
            R L   Y +++   + V D  +R+        I E R E           D ++++  N
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRER-------IGEAREELQRMLNEDELRDAVLLVFAN 109

Query: 123 KTDL 126
           K DL
Sbjct: 110 KQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 12/120 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ R    +  TT   TIG +  +    +  + ++ Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVET----VTYKNLKFQVWDLGGQTS 55

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT----ERGGDVIIVLVGNKTDL 126
            R     Y  ++   + V D  +R   L  S+   E+      E   D ++++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRDR-LGISK--SELHAMLEEEELKDAVLLVFANKQDM 112

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
KOG0395	196	consensus Ras-related GTPase [General function pre	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
PTZ00099	176	rab6; Provisional	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
PLN00023	334	GTP-binding protein; Provisional	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
PRK15494	339	era GTPase Era; Provisional	99.91
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.89
PRK12297	424	obgE GTPase CgtA; Reviewed	99.89
COG1159	298	Era GTPase [General function prediction only]	99.89
cd00881	189	GTP_translation_factor GTP translation factor fami	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
PRK12296	500	obgE GTPase CgtA; Reviewed	99.89
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.88
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.87
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.87
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
PRK05433	600	GTP-binding protein LepA; Provisional	99.87
COG1160	444	Predicted GTPases [General function prediction onl	99.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.86
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.86
CHL00189	742	infB translation initiation factor 2; Provisional	99.86
PRK05306	787	infB translation initiation factor IF-2; Validated	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK12317	425	elongation factor 1-alpha; Reviewed	99.85
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
COG2229	187	Predicted GTPase [General function prediction only	99.83
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.83
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.83
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.82
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.81
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.81
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.8
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.78
PRK04004	586	translation initiation factor IF-2; Validated	99.78
PRK12735	396	elongation factor Tu; Reviewed	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.77
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.77
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.76
COG2262	411	HflX GTPases [General function prediction only]	99.75
CHL00071	409	tufA elongation factor Tu	99.75
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.75
COG1084	346	Predicted GTPase [General function prediction only	99.74
COG0218	200	Predicted GTPase [General function prediction only	99.74
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.74
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.73
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.73
PLN00043	447	elongation factor 1-alpha; Provisional	99.73
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.73
PTZ00141	446	elongation factor 1- alpha; Provisional	99.73
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.73
PRK00049	396	elongation factor Tu; Reviewed	99.73
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
PLN03126	478	Elongation factor Tu; Provisional	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.71
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.7
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.7
COG0536	369	Obg Predicted GTPase [General function prediction	99.7
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.7
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.7
PRK13351	687	elongation factor G; Reviewed	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
COG1163	365	DRG Predicted GTPase [General function prediction	99.68
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.67
PRK12739	691	elongation factor G; Reviewed	99.66
KOG1145	683	consensus Mitochondrial translation initiation fac	99.66
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
PRK00007	693	elongation factor G; Reviewed	99.62
COG3596	296	Predicted GTPase [General function prediction only	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.61
PRK09866	741	hypothetical protein; Provisional	99.6
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.59
PRK12740	668	elongation factor G; Reviewed	99.58
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.56
KOG0090	238	consensus Signal recognition particle receptor, be	99.55
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.54
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.51
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.5
PRK14845	1049	translation initiation factor IF-2; Provisional	99.5
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.49
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.48
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.48
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.48
PTZ00258	390	GTP-binding protein; Provisional	99.48
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.48
PRK07560	731	elongation factor EF-2; Reviewed	99.48
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.45
PRK13768	253	GTPase; Provisional	99.45
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.43
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.42
PTZ00416	836	elongation factor 2; Provisional	99.42
PRK09601	364	GTP-binding protein YchF; Reviewed	99.42
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.42
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.41
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.4
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.4
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.39
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.38
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.38
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.38
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.36
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.34
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.33
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.33
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.33
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.33
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.31
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.31
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.29
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.27
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.27
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.25
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.24
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.24
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.21
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.2
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.2
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.2
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.19
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.17
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.17
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.15
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.15
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.12
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.12
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.12
PRK12289	352	GTPase RsgA; Reviewed	99.1
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.1
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.07
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.06
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.04
KOG0410	410	consensus Predicted GTP binding protein [General f	99.02
PRK12288	347	GTPase RsgA; Reviewed	99.0
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.99
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.95
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.92
PRK00098	298	GTPase RsgA; Reviewed	98.9
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.87
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.86
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.84
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.83
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.83
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.82
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.81
KOG1143	591	consensus Predicted translation elongation factor	98.79
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.77
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.77
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.75
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.73
KOG0460	449	consensus Mitochondrial translation elongation fac	98.72
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.71
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.69
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
KOG2486	320	consensus Predicted GTPase [General function predi	98.63
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.62
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.62
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.61
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.59
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.57
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.57
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.57
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.56
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.55
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.55
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.55
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.54
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.52
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.5
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.47
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.47
PRK10416	318	signal recognition particle-docking protein FtsY;	98.46
cd03112	158	CobW_like The function of this protein family is u	98.44
PRK01889	356	GTPase RsgA; Reviewed	98.44
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.43
PRK13796	365	GTPase YqeH; Provisional	98.42
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.41
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.39
PRK12288	347	GTPase RsgA; Reviewed	98.38
PRK14974	336	cell division protein FtsY; Provisional	98.38
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.36
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.35
COG1161	322	Predicted GTPases [General function prediction onl	98.34
COG1162	301	Predicted GTPases [General function prediction onl	98.27
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.26
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.25
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.24
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.23
PRK12289	352	GTPase RsgA; Reviewed	98.23
COG1162	301	Predicted GTPases [General function prediction onl	98.21
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.2
PRK13695	174	putative NTPase; Provisional	98.18
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	98.17
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.16
COG3523	1188	IcmF Type VI protein secretion system component Va	98.14
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.14
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.13
PRK13796	365	GTPase YqeH; Provisional	98.13
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.12
cd03110	179	Fer4_NifH_child This protein family's function is	98.11
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.05
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.05
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.04
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.02
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.01
cd03114	148	ArgK-like The function of this protein family is u	98.01
COG0523	323	Putative GTPases (G3E family) [General function pr	97.99
PRK00098	298	GTPase RsgA; Reviewed	97.97
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.93
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	97.92
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.92
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.91
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.89
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.83
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.82
PRK10867	433	signal recognition particle protein; Provisional	97.78
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.78
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.75
TIGR00959	428	ffh signal recognition particle protein. This mode	97.7
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.69
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.68
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.67
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.62
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.62
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.59
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.58
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.57
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.55
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.54
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.52
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.5
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.48
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.47
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.46
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.44
KOG2484	435	consensus GTPase [General function prediction only	97.43
PRK08118	167	topology modulation protein; Reviewed	97.43
cd03111	106	CpaE_like This protein family consists of proteins	97.43
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.42
PRK07261	171	topology modulation protein; Provisional	97.4
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.39
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.38
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.32
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.31
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.24
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.22
cd02036	179	MinD Bacterial cell division requires the formatio	97.22
COG1161	322	Predicted GTPases [General function prediction onl	97.2
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.18
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.15
PRK14530	215	adenylate kinase; Provisional	97.09
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.07
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.06
PRK06217	183	hypothetical protein; Validated	97.05
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.05
KOG1533	290	consensus Predicted GTPase [General function predi	97.04
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.04
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.04
PRK03839	180	putative kinase; Provisional	97.04
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.03
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.03
smart00382	148	AAA ATPases associated with a variety of cellular	97.03
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.01
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.98
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.97
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.97
PRK08233	182	hypothetical protein; Provisional	96.97
PRK01889	356	GTPase RsgA; Reviewed	96.97
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.96
PRK14531	183	adenylate kinase; Provisional	96.95
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.95
PRK14738	206	gmk guanylate kinase; Provisional	96.95
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.95
PRK14532	188	adenylate kinase; Provisional	96.94
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.94
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.94
PRK14737	186	gmk guanylate kinase; Provisional	96.93
PRK05541	176	adenylylsulfate kinase; Provisional	96.93
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.93
PTZ00088	229	adenylate kinase 1; Provisional	96.92
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.92
PF00004	132	AAA: ATPase family associated with various cellula	96.91
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.91
PRK05480	209	uridine/cytidine kinase; Provisional	96.91
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.9
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.88
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.85
PRK02496	184	adk adenylate kinase; Provisional	96.84
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.84
PRK13949	169	shikimate kinase; Provisional	96.83
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.82
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.82
PRK04195	482	replication factor C large subunit; Provisional	96.81
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.8
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.8
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	96.8
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.8
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.79
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.79
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.78
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.78

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.6e-43  Score=243.91  Aligned_cols=198  Identities=38%  Similarity=0.647  Sum_probs=174.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...+||+++|+.|+|||+|+.||..+.|.+.+..+.++++..+++.+++..++++||||+|+++|++....|+++||++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||+++.+||+.+..|+.++++....++|.++|+||.|+.+.+.+..++++.++..++++ ++++||+++.+++++|..
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998 999999999999999999


Q ss_pred             HHHHcCCCccCcccccccccccccCCCCCCccCCCCCCCccC
Q 028546          166 IAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC  207 (207)
Q Consensus       166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (207)
                      |...+............   ........++.+.....++|||
T Consensus       167 la~~lk~~~~~~~~~~~---~~~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  167 LAKELKQRKGLHVKWST---ASLESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             HHHHHHHhcccCCCCCc---CCCCceeeCCCCcccccCCCCC
Confidence            99988766555444442   1122222222234445555775

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-42  Score=239.97  Aligned_cols=202  Identities=78%  Similarity=1.160  Sum_probs=181.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ...+.+|++++|..++||||||.+|..+.|...+.++.++++...++.+.+..+++++|||+|+++|+++.+.|++++.+
T Consensus        18 ~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v   97 (221)
T KOG0094|consen   18 APLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   97 (221)
T ss_pred             ccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence            34556999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +|+|||+++..+|+...+|+..++...+. ++.+++|+||.||.+.+++..++.+..+++++..|+++|++.|.||+++|
T Consensus        98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF  177 (221)
T KOG0094|consen   98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF  177 (221)
T ss_pred             EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence            99999999999999999999999988875 58899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccCccccc-ccccccccCCCCCCccCCCCCCCccC
Q 028546          164 RKIAAALPGMETLSSTKQ-EDMVDVNLKPTVNSSQTEQQGGGCAC  207 (207)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (207)
                      ..|..++.+++..+...+ ++...++.+++.+..+ .++++.|||
T Consensus       178 rrIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~-~s~~~~~~C  221 (221)
T KOG0094|consen  178 RRIAAALPGMEVLEILSKQESMVDINLKGSPNEQQ-ASKPGLCSC  221 (221)
T ss_pred             HHHHHhccCccccccccccccceeEEccCCCCccc-ccCCCCCCC
Confidence            999999999987663433 3355556665543333 333777998

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-40  Score=230.10  Aligned_cols=198  Identities=38%  Similarity=0.730  Sum_probs=176.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ..++|++++|..++|||||+-||..++|.+...++.+-.+...++.+++..+++.||||+|+++|.++-+.|+++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            35699999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||+++.+||..++.|++.+.....+++.+.||+||+|+.+.+++..+++..+++..+..++++|+++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCccCcccccccccccccCCCCCCccCCCCCCCccC
Q 028546          167 AAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC  207 (207)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (207)
                      .+.+..............   +..-...+.+.++++++|||
T Consensus       163 a~~lp~~~~~~~~~~~~~---~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  163 AEKLPCSDPQERQGLPNR---RQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHhccCcccccccccccc---ccceecccCCCCcCcCCcCC
Confidence            999998877766521110   12222222225677888887

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.4e-39  Score=227.06  Aligned_cols=169  Identities=44%  Similarity=0.765  Sum_probs=163.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +....+||+++|.+++|||+|+.+|..+.|...+..+.++++..+++.+++..+.+.+|||+|+++++.+...|+++|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            45667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +++|||+++..+|+.+..|+..+.++....+|.++|+||+|+.+.+++..+..++++..+|+.++++||++|.||++.|-
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028546          165 KIAAALPGM  173 (207)
Q Consensus       165 ~l~~~~~~~  173 (207)
                      .|++.+...
T Consensus       168 ~La~~i~~k  176 (207)
T KOG0078|consen  168 SLARDILQK  176 (207)
T ss_pred             HHHHHHHhh
Confidence            999998853

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.9e-38  Score=212.61  Aligned_cols=171  Identities=37%  Similarity=0.654  Sum_probs=160.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...+||+++|..|+|||+|+-+|+.+.|.+....+.+.++..+.+.+++..+++.+|||+|+++|+++++.|+++|.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            34599999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++.+++|..+.-|++.+..+.. +++..++|+||+|....+.+..++...+++++++.|+++||++.++++..|+.
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence            99999999999999999999987764 66778999999998888999999999999999999999999999999999999


Q ss_pred             HHHHcCCCccCc
Q 028546          166 IAAALPGMETLS  177 (207)
Q Consensus       166 l~~~~~~~~~~~  177 (207)
                      |+.++.+.+..-
T Consensus       169 lveKIi~tp~l~  180 (209)
T KOG0080|consen  169 LVEKIIETPSLW  180 (209)
T ss_pred             HHHHHhcCcchh
Confidence            999998665443

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=3.5e-37  Score=225.67  Aligned_cols=198  Identities=31%  Similarity=0.583  Sum_probs=163.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      ++|+++|..|+|||||+.+|..+.|...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888888888888888899998899999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++++++|+.+..|+..+......+.|+++|+||+|+.+.+++...+...+++.+ ++.++++||++|.|++++|++|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999888776678999999999999888888888888888775 789999999999999999999999


Q ss_pred             HcCCCccCcc-cccccccccccCCC--CCCccCCCCCCCccC
Q 028546          169 ALPGMETLSS-TKQEDMVDVNLKPT--VNSSQTEQQGGGCAC  207 (207)
Q Consensus       169 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  207 (207)
                      .+........ +.....+....+|.  .-.---+|.+-.=||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (202)
T cd04120         161 DILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC  202 (202)
T ss_pred             HHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence            8764322222 22222222233333  333334556655555

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-37  Score=215.50  Aligned_cols=169  Identities=38%  Similarity=0.700  Sum_probs=161.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      .....+|++++|+.|+|||+|+.+|....|.+.+..+.++++-.+.+.++++.+++++|||+|++.|++....|++++-+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|||||+++.++|..+..|+..++.+...+..++|++||+|+...+++..++.+.+++++++.++++|++++.+++|.|.
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028546          165 KIAAALPGM  173 (207)
Q Consensus       165 ~l~~~~~~~  173 (207)
                      .....+...
T Consensus       162 nta~~Iy~~  170 (216)
T KOG0098|consen  162 NTAKEIYRK  170 (216)
T ss_pred             HHHHHHHHH
Confidence            988877543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.5e-36  Score=223.32  Aligned_cols=195  Identities=33%  Similarity=0.542  Sum_probs=159.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +||+++|++|+|||||+++|+++.+...+.++.+.++....+.++ +..+.+.+||+||++++..++..+++++|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999988888888888877778887 7788999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~  163 (207)
                      ||++++.+|+.+..|+..+....    ..++|++||+||+|+.+.+....+++..+++..+ ..++++|+++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886542    2578999999999997667788888899999988 689999999999999999


Q ss_pred             HHHHHHcCCCccCcccccccccccccCCCCCCccCCCCCCCcc
Q 028546          164 RKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCA  206 (207)
Q Consensus       164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (207)
                      ++|.+.+............  ........-.+..++.++++||
T Consensus       161 ~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         161 RFLVKNILANDKNLQQAET--PEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHhchhhHhhcC--CCcccccccccceeccccCCCC
Confidence            9999988654322222221  1112222223344556666676

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.8e-38  Score=209.39  Aligned_cols=186  Identities=39%  Similarity=0.648  Sum_probs=169.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +-++.+|+|++|+|||+|+.+|-.+.|..+|..+.+.++..+++.+++..+++.|||++|+++|+.+...|+++.+++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||+++.++|.+..+|++.++..++ .+|-++|+||.|..+.+.+..++++.++..+++.+|++|+++++|++..|..|.
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence            9999999999999999999998887 689999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCccCcccccccccccccCCCCC
Q 028546          168 AALPGMETLSSTKQEDMVDVNLKPTVN  194 (207)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (207)
                      +.+....-.....+........+++.+
T Consensus       166 ~qvl~~k~r~~~~~~r~~~~~l~~n~~  192 (198)
T KOG0079|consen  166 KQVLQAKLRESVEQQRADAVSLKDNSK  192 (198)
T ss_pred             HHHHHHHHhhcHHHHhhcceEeccCCC
Confidence            988766534444444455556666553

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=6.9e-36  Score=221.85  Aligned_cols=166  Identities=38%  Similarity=0.720  Sum_probs=153.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|+.++..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            55999999999999999999999999987778888888888888899988999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++|+
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999887766899999999999987778888888888888899999999999999999999999


Q ss_pred             HHcCCC
Q 028546          168 AALPGM  173 (207)
Q Consensus       168 ~~~~~~  173 (207)
                      ..+...
T Consensus       171 ~~i~~~  176 (216)
T PLN03110        171 LEIYHI  176 (216)
T ss_pred             HHHHHH
Confidence            988654

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.9e-36  Score=217.67  Aligned_cols=167  Identities=36%  Similarity=0.598  Sum_probs=153.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|+++|..++..+++++|++||
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            46999999999999999999999999987777888888877888889988999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++.+|+.+..|+..+.... .+.|++||+||.|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|.
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999999997765 4799999999999988888889999999999999999999999999999999999


Q ss_pred             HHcCCCcc
Q 028546          168 AALPGMET  175 (207)
Q Consensus       168 ~~~~~~~~  175 (207)
                      +.+.....
T Consensus       164 ~~i~~~~~  171 (189)
T cd04121         164 RIVLMRHG  171 (189)
T ss_pred             HHHHHhcC
Confidence            98865444

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-36  Score=212.81  Aligned_cols=170  Identities=36%  Similarity=0.709  Sum_probs=162.3

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      .+....+||+++|++++|||-|+.+|..+.|.....++.+.++..+++.++++.++.+||||+|+++|+.....|++++.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            34456699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      ++++|||++...+|+.+.+|+.+++.+.+.++++++|+||+||...+.+..++...++...+..++++||+++.|++++|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 028546          164 RKIAAALPGM  173 (207)
Q Consensus       164 ~~l~~~~~~~  173 (207)
                      ..++..+...
T Consensus       169 ~~~l~~I~~~  178 (222)
T KOG0087|consen  169 ERVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHHH
Confidence            9999887644

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.1e-35  Score=218.29  Aligned_cols=195  Identities=35%  Similarity=0.622  Sum_probs=161.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46999999999999999999999999987778888888877888888888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++++|+.+..|+..+..... ..|++||+||+|+.+...+...+...++..++.+++++|+++|.|++++|++|.
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999999876553 689999999999987777777888888888899999999999999999999999


Q ss_pred             HHcCCCccCcccccccccccccCCCCCCccCCCCCCCcc
Q 028546          168 AALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCA  206 (207)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (207)
                      +.+.........+.....++-.....   ...+++++||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  199 (199)
T cd04110         164 ELVLRAKKDNLAKQQQQQQNDVVKLP---KNSKRKKRCC  199 (199)
T ss_pred             HHHHHhhhccCcccccCCccccCccc---hhccccccCC
Confidence            99876544443333222222222111   1336667776

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.5e-36  Score=207.63  Aligned_cols=176  Identities=40%  Similarity=0.622  Sum_probs=160.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |++......+||+++|++|+|||+|+++|+..+|...+..+.+.++..+.+.+++..+.+++|||+|+++|.++--.+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            55555566799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCC--CCCCCHHHHHHHHHHh-CCeEEEEec
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVD--KRQVSIEEGDGKAKEF-GVMFIETSA  153 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~  153 (207)
                      ++|..++|||++++.+|+.+..|..++.....    ..-|+||++||+|+.+  .+.++...+..++... ++++|++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999877654    5678999999999854  2788888888888876 579999999


Q ss_pred             CCCCChHHHHHHHHHHcCCCccC
Q 028546          154 KAGFNIKPLFRKIAAALPGMETL  176 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~~~~~  176 (207)
                      ++..||+++|..+.+.+...+..
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANEDR  183 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccch
Confidence            99999999999999999887764

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=3.6e-35  Score=214.35  Aligned_cols=190  Identities=38%  Similarity=0.667  Sum_probs=160.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +||+++|++|+|||||+++|.++.+.. .+.++.+.++....+.+++..+.+.|||+||++++...+..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999998864 5567777777777788888889999999999999999889999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||+++.++++.+..|+..+.......+|+++|+||+|+...+.+...+...++..++++++++|+++|.|++++|.+|.+
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876667999999999999777777777888888888999999999999999999999999


Q ss_pred             HcCCCccCcccccccccccccCCCCCCccCCCCCCCcc
Q 028546          169 ALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCA  206 (207)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (207)
                      .+.+.....+......       ....++...|.++||
T Consensus       161 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~  191 (191)
T cd04112         161 ELKHRKYEQPDEGKFK-------ISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHhccccCCCCcEE-------eccccCcccccCCCC
Confidence            9876654443333222       223344667777887

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=6.9e-35  Score=215.66  Aligned_cols=199  Identities=35%  Similarity=0.620  Sum_probs=163.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      .+||+|+|++|+|||||+++|+++.+...+.++.+.++..+.+.+ ++..+.+.+||++|++.+...+..+++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999998877888888888777776 4566899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||++++++|+.+..|+..+..... ...|++||+||.|+.+...+..++...+++.++++++++|+++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999876643 457889999999998877888888889999999999999999999999999999


Q ss_pred             HHHcCCCccCcc---------cccccccccccCCCCCCccCCCCCCCccC
Q 028546          167 AAALPGMETLSS---------TKQEDMVDVNLKPTVNSSQTEQQGGGCAC  207 (207)
Q Consensus       167 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (207)
                      .+.+.+.....+         -+.......-.+..-.+.+..+-.+.|||
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (211)
T cd04111         162 TQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSPTFASPEKSCCC  211 (211)
T ss_pred             HHHHHHHhhcCCCCccccccccccCCCcccccccCcccccccCCCCCCCC
Confidence            997764422221         11112222233344445556666777887

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=212.93  Aligned_cols=167  Identities=38%  Similarity=0.708  Sum_probs=151.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            44579999999999999999999999998877788888888778888888888999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.+++.+..|+..+........|+++|+||.|+.+.+.+..++...+++.++++++++|++++.|++++|.+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887766667999999999999877778888888999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      +.+.+..
T Consensus       163 l~~~~~~  169 (210)
T PLN03108        163 TAAKIYK  169 (210)
T ss_pred             HHHHHHH
Confidence            9987753

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=6.2e-35  Score=212.94  Aligned_cols=163  Identities=36%  Similarity=0.593  Sum_probs=142.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988777777766443 4456678888899999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      +++..+|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+.......++..++++++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   4689999999999987777777777888888899999999999999999999999


Q ss_pred             HHcCCCc
Q 028546          168 AALPGME  174 (207)
Q Consensus       168 ~~~~~~~  174 (207)
                      +.+....
T Consensus       160 ~~l~~~~  166 (190)
T cd04144         160 RALRQQR  166 (190)
T ss_pred             HHHHHhh
Confidence            9876433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.9e-34  Score=210.13  Aligned_cols=163  Identities=40%  Similarity=0.686  Sum_probs=149.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998777888888887788888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |+++++++..+..|+..+........|+++|+||.|+.+...+.......++...+++++++|+++|.|++++|.+|.+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998777788888888888888999999999999999999999999


Q ss_pred             cCC
Q 028546          170 LPG  172 (207)
Q Consensus       170 ~~~  172 (207)
                      +..
T Consensus       161 ~~~  163 (188)
T cd04125         161 IIK  163 (188)
T ss_pred             HHH
Confidence            864

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=2e-34  Score=205.99  Aligned_cols=163  Identities=36%  Similarity=0.674  Sum_probs=149.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999887777877787777788888889999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|.++.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776667899999999999888888888889999989999999999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd04122         162 KIY  164 (166)
T ss_pred             HHh
Confidence            764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2.4e-34  Score=213.59  Aligned_cols=164  Identities=40%  Similarity=0.610  Sum_probs=148.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888889999888888888765 468999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      ||++++++|+.+..|+..+.....   .++|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887643   35689999999999877788888888899989999999999999999999999


Q ss_pred             HHHHcCCC
Q 028546          166 IAAALPGM  173 (207)
Q Consensus       166 l~~~~~~~  173 (207)
                      |...+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.4e-34  Score=214.16  Aligned_cols=165  Identities=33%  Similarity=0.546  Sum_probs=139.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+|+|||||+++|+.+.+.. ..++.+.++.....    ..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999875 35555554433322    4578999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHhC-----
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD-------------------KRQVSIEEGDGKAKEFG-----  145 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  145 (207)
                      |++++++|+.+..|+..+......++|+++|+||+|+.+                   .+.+..+++..+++.++     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999888888766566799999999999975                   56778889999998876     


Q ss_pred             ---------CeEEEEecCCCCChHHHHHHHHHHcCCCccCccc
Q 028546          146 ---------VMFIETSAKAGFNIKPLFRKIAAALPGMETLSST  179 (207)
Q Consensus       146 ---------~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~~  179 (207)
                               +++++|||++|.||+++|..+++.+....-..+.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~  198 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA  198 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence                     6899999999999999999999988755444333

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=4.7e-34  Score=203.08  Aligned_cols=160  Identities=38%  Similarity=0.687  Sum_probs=148.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++++...+..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++++|+.+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++++++||++|.|++++|.+|+++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999987766679999999999998888888888898998899999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=9.2e-34  Score=210.96  Aligned_cols=168  Identities=27%  Similarity=0.469  Sum_probs=148.5

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      ++.....+||+++|+.|+|||+|+.+|..+.|...+.++.+..+ ...+.+++..+.+.||||+|+++|..+...+++++
T Consensus         7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a   85 (232)
T cd04174           7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   85 (232)
T ss_pred             CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence            34556789999999999999999999999999988888887655 34577889999999999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eE
Q 028546           83 SVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MF  148 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~  148 (207)
                      |++|+|||++++.+|+. +..|+..+..... +.|++||+||+|+.+            .+.+..++++.++..+++ .|
T Consensus        86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~  164 (232)
T cd04174          86 DAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY  164 (232)
T ss_pred             cEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence            99999999999999998 5899999987654 689999999999864            256888999999999998 69


Q ss_pred             EEEecCCCC-ChHHHHHHHHHHcCC
Q 028546          149 IETSAKAGF-NIKPLFRKIAAALPG  172 (207)
Q Consensus       149 ~~~s~~~~~-~i~~~~~~l~~~~~~  172 (207)
                      ++|||++|. |++++|..++..+..
T Consensus       165 ~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         165 LECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             EEccCCcCCcCHHHHHHHHHHHHHH
Confidence            999999998 899999999988654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=8.3e-34  Score=202.59  Aligned_cols=162  Identities=39%  Similarity=0.728  Sum_probs=147.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998887888887777777777888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++++++.+..|+..+........|+++|+||+|+.+.+....+....++..++++++++|+++|.|++++|++|.+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999987766678999999999998777777778888888889999999999999999999999987


Q ss_pred             cC
Q 028546          170 LP  171 (207)
Q Consensus       170 ~~  171 (207)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=8.4e-34  Score=202.93  Aligned_cols=165  Identities=41%  Similarity=0.758  Sum_probs=150.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++|+
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            35899999999999999999999999988888888888877888888888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..+.....+..++++++++|+++|.|++++|.++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999876666799999999999987777777788888888899999999999999999999999


Q ss_pred             HHcCC
Q 028546          168 AALPG  172 (207)
Q Consensus       168 ~~~~~  172 (207)
                      +++..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.4e-34  Score=205.60  Aligned_cols=163  Identities=28%  Similarity=0.507  Sum_probs=145.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ...++||+++|++|+|||||+.+|..+.|...+.++.+..+ ...+.+++..+.+.+|||+|+++|..+...+++++|++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~   80 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   80 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence            34679999999999999999999999999888888887544 45677889889999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEE
Q 028546           86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIET  151 (207)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~  151 (207)
                      |+|||++++.+|+.+ ..|+..+....+ +.|++||+||.|+.+            .+.+..++++.+++.+++ +|++|
T Consensus        81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          81 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            999999999999997 799999987654 689999999999854            245888999999999996 99999


Q ss_pred             ecCCCCC-hHHHHHHHHHHc
Q 028546          152 SAKAGFN-IKPLFRKIAAAL  170 (207)
Q Consensus       152 s~~~~~~-i~~~~~~l~~~~  170 (207)
                      ||++|.| ++++|..++..+
T Consensus       160 SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         160 SALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHH
Confidence            9999998 999999998864

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=8e-34  Score=203.95  Aligned_cols=160  Identities=36%  Similarity=0.592  Sum_probs=143.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+|+|||+|+.+|..+.|...+.++.+..+ ...+.+++..+++.+|||+|++++..+...+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888888887554 455678888899999999999999999999999999999999


Q ss_pred             ECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCC----------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546           90 DVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKR----------QVSIEEGDGKAKEFGV-MFIETSAKAGF  157 (207)
Q Consensus        90 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (207)
                      |++++.+|+.+ ..|+..+..... +.|++||+||.|+.+.+          .+..++...+++.+++ .+++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689999876654 69999999999996543          4778889999999998 69999999999


Q ss_pred             ChHHHHHHHHHHcC
Q 028546          158 NIKPLFRKIAAALP  171 (207)
Q Consensus       158 ~i~~~~~~l~~~~~  171 (207)
                      ||+++|+.+++.+.
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-34  Score=193.55  Aligned_cols=170  Identities=37%  Similarity=0.631  Sum_probs=159.8

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (207)
                      .+.....-+|++++|+.|+|||+|+++|+.++|......+.++++..+.+.+.++.+++++|||+|+++|++..+.|+++
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            34444556999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      +-+.++|||+++.++|+.+..|+..++.....++-+++++||.|+..++++...++..++.+..+-+.++|+++|+|++|
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            99999999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 028546          162 LFRKIAAALP  171 (207)
Q Consensus       162 ~~~~l~~~~~  171 (207)
                      .|-...+.+.
T Consensus       162 aFl~c~~tIl  171 (214)
T KOG0086|consen  162 AFLKCARTIL  171 (214)
T ss_pred             HHHHHHHHHH
Confidence            9988877764

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=9.9e-34  Score=203.39  Aligned_cols=163  Identities=33%  Similarity=0.535  Sum_probs=145.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||+.++..++..+++++|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            58999999999999999999999999877777776444 44567788888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ||++++.+|+.+..|+..+.... ..++|+++|+||.|+.+.+.+..++...+++.+++++++|||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999888876643 35799999999999987778888888889998999999999999999999999999


Q ss_pred             HHcCC
Q 028546          168 AALPG  172 (207)
Q Consensus       168 ~~~~~  172 (207)
                      ..+..
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            87764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-34  Score=193.29  Aligned_cols=168  Identities=38%  Similarity=0.700  Sum_probs=159.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+|++++|...+|||+|+.++.+..|.....++.++++..+++....+.+++++|||+|+++|+.....++++++++|+|
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            47999999999999999999999999999999999999999998888889999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||+++.++|..++.|...+....-.+.|+|+++||+|+.+++-+..+..+.+++++|+++|++|++.+.|++++|+.|..
T Consensus       101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            99999999999999999998887789999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCccC
Q 028546          169 ALPGMETL  176 (207)
Q Consensus       169 ~~~~~~~~  176 (207)
                      .+-+....
T Consensus       181 ~Ic~kmse  188 (193)
T KOG0093|consen  181 IICDKMSE  188 (193)
T ss_pred             HHHHHhhh
Confidence            88655433

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1e-33  Score=206.39  Aligned_cols=165  Identities=34%  Similarity=0.567  Sum_probs=145.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +.++||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4469999999999999999999999998877777766444 566778888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++++|+.+..|+..+..... .+.|+++|+||.|+.+.+.+...+...++..++.+++++||++|.|++++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998876543 47899999999998776777777777788888899999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |++.+..
T Consensus       162 l~~~l~~  168 (189)
T PTZ00369        162 LVREIRK  168 (189)
T ss_pred             HHHHHHH
Confidence            9988753

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2.5e-33  Score=204.56  Aligned_cols=162  Identities=31%  Similarity=0.499  Sum_probs=141.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|+.|+|||||+.+|..+.|...+.++.+..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            468999999999999999999999999888888877544 4456678888999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEEec
Q 028546           88 VYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFG-VMFIETSA  153 (207)
Q Consensus        88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~  153 (207)
                      |||++++.+|+.+. .|+..+.... .++|++||+||.|+.+..            .+..++...+++.++ ++++++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 5888776554 479999999999996542            355677888888888 58999999


Q ss_pred             CCCCChHHHHHHHHHHcC
Q 028546          154 KAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~  171 (207)
                      ++|.|++++|.+|++.+.
T Consensus       160 k~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998875

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3e-33  Score=199.82  Aligned_cols=162  Identities=31%  Similarity=0.606  Sum_probs=147.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888899988888888888888899999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |++++.+++.+..|+..+.....     .+.|+++|+||.|+.+......+....++...+++++++|+++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999877654     4689999999999976667777777778888889999999999999999999


Q ss_pred             HHHHHcC
Q 028546          165 KIAAALP  171 (207)
Q Consensus       165 ~l~~~~~  171 (207)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=3.2e-33  Score=199.69  Aligned_cols=163  Identities=42%  Similarity=0.751  Sum_probs=149.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999999887788888888888888888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++..++++++++|+++|.|++++|.+|.+
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998766567899999999999877778888888888889999999999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=2.1e-33  Score=203.24  Aligned_cols=164  Identities=24%  Similarity=0.508  Sum_probs=143.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|..|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899988888888889998899999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-----CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-----RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |++++.+++.+..|+..+........| ++|+||+|+..+     .+...++...++..++++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876555566 678999998531     12224556677888889999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      ++.+.+.+..
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9999886543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-34  Score=192.95  Aligned_cols=163  Identities=39%  Similarity=0.684  Sum_probs=155.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+++|..|+|||+|+.+|..+-|++.-..+.+.++-.+++.+++..+++.+|||+|+++|++....|++.++++|+|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            48999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++...+|+.+-+|+..+..+.+.++.-++|+||+|+.+.+++.....+.+.+..+.-++++|+++.++++.+|..++.
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            99999999999999999999999988899999999999999999999999999988888999999999999999999987


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+-
T Consensus       167 rli  169 (213)
T KOG0095|consen  167 RLI  169 (213)
T ss_pred             HHH
Confidence            664

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=3.2e-33  Score=201.51  Aligned_cols=161  Identities=27%  Similarity=0.516  Sum_probs=142.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|++|+|||||+++|.++.++..+.++.+..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999999888888876554 45677888889999999999999999999999999999999


Q ss_pred             EECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecC
Q 028546           89 YDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIETSAK  154 (207)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (207)
                      ||++++.+|+.+ ..|+..+....+ +.|+++|+||.|+.+            .+.+..+++..+++.+++ .+++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999995 799999987654 689999999999854            245788899999999997 89999999


Q ss_pred             CCCC-hHHHHHHHHHHcC
Q 028546          155 AGFN-IKPLFRKIAAALP  171 (207)
Q Consensus       155 ~~~~-i~~~~~~l~~~~~  171 (207)
                      +|.+ ++++|..++....
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999998543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=7.8e-33  Score=197.48  Aligned_cols=162  Identities=38%  Similarity=0.772  Sum_probs=148.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|++++|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+.++...+..++++++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            58999999999999999999999998877788888888888888888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++.+++.+..|+..+......++|+++|+||.|+...+++..++...++...+++++++|+++|.|++++|++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877667999999999999877777788888888888899999999999999999999988


Q ss_pred             Hc
Q 028546          169 AL  170 (207)
Q Consensus       169 ~~  170 (207)
                      .+
T Consensus       163 ~i  164 (165)
T cd01868         163 EI  164 (165)
T ss_pred             Hh
Confidence            65

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=6.8e-33  Score=197.84  Aligned_cols=162  Identities=41%  Similarity=0.712  Sum_probs=146.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999999988878888888877888888888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||++++.+++.+..|+..+......++|+++|+||+|+.+.++........+++..+. .++++|+++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876666799999999999987777777888888888876 78999999999999999999


Q ss_pred             HHH
Q 028546          167 AAA  169 (207)
Q Consensus       167 ~~~  169 (207)
                      .+.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3.8e-33  Score=198.54  Aligned_cols=161  Identities=35%  Similarity=0.578  Sum_probs=141.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            47999999999999999999999988777666665 44556677888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+....++..++.+++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998876543 5789999999999977667777777778888889999999999999999999998


Q ss_pred             HHc
Q 028546          168 AAL  170 (207)
Q Consensus       168 ~~~  170 (207)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.2e-32  Score=203.98  Aligned_cols=172  Identities=38%  Similarity=0.647  Sum_probs=145.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      .....+||+|+|++|+|||||+++|.+..+. ...++.+.+.....+.+++..+.+.+|||||++++..++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3345699999999999999999999988774 446677777777777788888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546           85 AVIVYDVANRQSFLNTSR-WIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      +|+|||++++++|+.+.. |...+.... ....|+++|+||+|+.....+..++...++...++.++++|++++.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999876 555554332 245789999999999877777777778888888999999999999999999


Q ss_pred             HHHHHHHcCCCccCc
Q 028546          163 FRKIAAALPGMETLS  177 (207)
Q Consensus       163 ~~~l~~~~~~~~~~~  177 (207)
                      |++|.+.+.+.....
T Consensus       169 ~~~l~~~~~~~~~~~  183 (211)
T PLN03118        169 FEELALKIMEVPSLL  183 (211)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999987654433

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=4.5e-33  Score=201.46  Aligned_cols=164  Identities=40%  Similarity=0.682  Sum_probs=146.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC----------CeEEEEEEEecCChhhhcccccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS   77 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   77 (207)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.++....+.+.          +..+.+.+||+||++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45999999999999999999999999988888888877776666554          35679999999999999999999


Q ss_pred             ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546           78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      +++++|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999987654 346899999999999887788888888999999999999999999


Q ss_pred             CChHHHHHHHHHHcC
Q 028546          157 FNIKPLFRKIAAALP  171 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~  171 (207)
                      .|++++|++|.+.+.
T Consensus       163 ~~v~~l~~~l~~~~~  177 (180)
T cd04127         163 TNVEKAVERLLDLVM  177 (180)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=5.3e-33  Score=197.73  Aligned_cols=161  Identities=44%  Similarity=0.769  Sum_probs=153.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++|+|||||+++|.++.++..+.++.+.+.....+..++..+.+.+||++|++++......++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999889998899999999999999999999999999998888899999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546           91 VANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      ++++++++.+..|+..+......+.|++|++||.|+.+.+++..++++.+++.++.+++++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999999999988886799999999999988889999999999999999999999999999999999999876


Q ss_pred             C
Q 028546          171 P  171 (207)
Q Consensus       171 ~  171 (207)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=8.5e-33  Score=196.52  Aligned_cols=161  Identities=41%  Similarity=0.743  Sum_probs=147.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++++++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998887888888887788888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.++..+..|+..+......++|+++++||+|+.+...+..++...++...++.++++|++++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998877766789999999999998877788888888899999999999999999999999999875


Q ss_pred             c
Q 028546          170 L  170 (207)
Q Consensus       170 ~  170 (207)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            3

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1e-32  Score=197.48  Aligned_cols=164  Identities=38%  Similarity=0.728  Sum_probs=149.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|.+|+|||||++++.++.+...+.++.+.+.....+..++....+.+||+||++++......+++++|++|+|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999998887778888888888888888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++.+++.+..|+..+......+.|++||+||+|+.+...+..++.+.++...++.++++|++++.|++++|.++.+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998776667999999999999877777788888888888999999999999999999999998


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+.+
T Consensus       164 ~~~~  167 (168)
T cd01866         164 EIYE  167 (168)
T ss_pred             HHHh
Confidence            7653

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.4e-32  Score=203.58  Aligned_cols=163  Identities=25%  Similarity=0.489  Sum_probs=140.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+|+|.+|+|||||+.+|..+.|+..+.++....+. ..+.+++..+.+.+|||+|++.|...+..+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999999999888888875553 5677888899999999999999999999999999999999


Q ss_pred             EECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecC
Q 028546           89 YDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAK  154 (207)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (207)
                      ||++++++|+.+ ..|...+.... .+.|++||+||+|+.++            ..+..++...+++.+++ .|++|||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999998 46776665443 47999999999998643            13667788899999996 89999999


Q ss_pred             CCCC-hHHHHHHHHHHcCCC
Q 028546          155 AGFN-IKPLFRKIAAALPGM  173 (207)
Q Consensus       155 ~~~~-i~~~~~~l~~~~~~~  173 (207)
                      ++.+ |+++|..........
T Consensus       159 ~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         159 SSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCCcCHHHHHHHHHHHHHhc
Confidence            9885 999999999976543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2.1e-32  Score=200.16  Aligned_cols=164  Identities=37%  Similarity=0.654  Sum_probs=142.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..++.++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999999874 5667777777777888899889999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK----RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      ||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.    ..+...++..++..++++++++|+++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887653 36899999999998643    34445666777788889999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      +|.+.+....
T Consensus       160 ~i~~~~~~~~  169 (193)
T cd04118         160 KVAEDFVSRA  169 (193)
T ss_pred             HHHHHHHHhc
Confidence            9999886443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=8.4e-34  Score=192.17  Aligned_cols=164  Identities=40%  Similarity=0.729  Sum_probs=151.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      .++++|+|+.-+|||+|+..|..+++.+-++|+.+.+++.+.+.. .+..+++++|||+|+++|++.+..|++++-++++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            589999999999999999999999999999999999999888766 4567899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |||+++.++|+.+..|+........  .++.+++|++|.|+...+++..+++++++..+++.++++|+++|.|+++.|+.
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m  167 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM  167 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence            9999999999999999998766654  44557899999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |.+.+..
T Consensus       168 laqeIf~  174 (213)
T KOG0091|consen  168 LAQEIFQ  174 (213)
T ss_pred             HHHHHHH
Confidence            9997653

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=8.2e-33  Score=201.31  Aligned_cols=166  Identities=31%  Similarity=0.469  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++.. .+... +..+.+.+|||||++++...+..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999987777777665543 34444 6678999999999999999999999999999999


Q ss_pred             EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC----CCCHHHHHHHHHHhCC-eEEEEecCCCCChHHH
Q 028546           89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR----QVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPL  162 (207)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  162 (207)
                      ||++++.+|+.+. .|+..+.... .+.|+++|+||.|+.+..    .+...+...++..+++ +++++|+++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 5887776543 468999999999986532    4567778888888888 9999999999999999


Q ss_pred             HHHHHHHcCCCccCc
Q 028546          163 FRKIAAALPGMETLS  177 (207)
Q Consensus       163 ~~~l~~~~~~~~~~~  177 (207)
                      |..+.+.+.......
T Consensus       159 f~~l~~~~~~~~~~~  173 (187)
T cd04132         159 FDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHhhhhhh
Confidence            999999988655544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.3e-32  Score=195.72  Aligned_cols=159  Identities=40%  Similarity=0.724  Sum_probs=143.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC--CeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+.  +..+++.+||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999999987778888888777777776  677899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++++++.+..|+..+..... ++|+++|+||.|+.....+..++...+++.++++++++|+++|.|++++|++|.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999876554 699999999999987777888888888999999999999999999999999998


Q ss_pred             HH
Q 028546          168 AA  169 (207)
Q Consensus       168 ~~  169 (207)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            64

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.1e-32  Score=196.62  Aligned_cols=162  Identities=33%  Similarity=0.576  Sum_probs=142.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998888766666665443 45677888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ||+++..+++.+..|+..+.... ..+.|+++|+||+|+.+...+.......+++.++++++++||++|.|++++|.+|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887653 35799999999999987777777777778888889999999999999999999999


Q ss_pred             HHcC
Q 028546          168 AALP  171 (207)
Q Consensus       168 ~~~~  171 (207)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=2.2e-32  Score=194.33  Aligned_cols=161  Identities=84%  Similarity=1.224  Sum_probs=147.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++++|||||++++++..+...+.++.+.++....+.+++..+++.+||+||+..+..++..+++++|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888889998988888888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++++|+.+..|+..+....+.+.|+++++||+|+.+......+.....+...+++++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999887766679999999999997777777777888888888999999999999999999999875


Q ss_pred             c
Q 028546          170 L  170 (207)
Q Consensus       170 ~  170 (207)
                      +
T Consensus       161 l  161 (161)
T cd01861         161 L  161 (161)
T ss_pred             C
Confidence            3

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=2.5e-32  Score=194.46  Aligned_cols=163  Identities=47%  Similarity=0.816  Sum_probs=148.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+......+++++|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999988787888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.+++.+..|+..+.......+|+++++||+|+....+...+.+..++..++++++++|+.+|.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887765679999999999987767777788888888889999999999999999999999988


Q ss_pred             cCC
Q 028546          170 LPG  172 (207)
Q Consensus       170 ~~~  172 (207)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.9e-32  Score=197.19  Aligned_cols=160  Identities=29%  Similarity=0.491  Sum_probs=138.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|.+|+|||||+++|..+.|...+.++.+..+. ..+.+++..+.+.+||++|++++...+..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998788888775553 4567788889999999999999999999999999999999


Q ss_pred             EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEEecC
Q 028546           89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIETSAK  154 (207)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~  154 (207)
                      ||++++++|+.+. .|+..+.... .++|++||+||.|+.+.            +.+..+++..+++..+ +.++++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999986 5888887654 46899999999998643            4566777788888887 689999999


Q ss_pred             CCCChHHHHHHHHHHc
Q 028546          155 AGFNIKPLFRKIAAAL  170 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~  170 (207)
                      +|.|++++|+.++...
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=2.4e-32  Score=195.88  Aligned_cols=163  Identities=37%  Similarity=0.616  Sum_probs=143.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|.+|+|||||+++|.++.|...+.++.+.++....+.+++..+.+.+||+||++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998888998888888888888888999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQ--VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ++++++++.+..|+..+... .....|+++|+||+|+.+...  ........++..++.+++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999987654 344678999999999865433  234556677777889999999999999999999999


Q ss_pred             HHcCCC
Q 028546          168 AALPGM  173 (207)
Q Consensus       168 ~~~~~~  173 (207)
                      +++.+.
T Consensus       162 ~~~~~~  167 (170)
T cd04108         162 ALTFEL  167 (170)
T ss_pred             HHHHHc
Confidence            987643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.6e-32  Score=202.93  Aligned_cols=165  Identities=31%  Similarity=0.560  Sum_probs=145.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +..+||+++|.+|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67799999999999999999999999998888889888888777777888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+ +....+.. .++...++.++++||++|.|++++|.+|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999998665 4699999999999853 33344444 5666778899999999999999999999


Q ss_pred             HHHcCCCc
Q 028546          167 AAALPGME  174 (207)
Q Consensus       167 ~~~~~~~~  174 (207)
                      .+.+.+..
T Consensus       168 ~~~~~~~~  175 (219)
T PLN03071        168 ARKLAGDP  175 (219)
T ss_pred             HHHHHcCc
Confidence            99886553

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.3e-32  Score=194.65  Aligned_cols=161  Identities=36%  Similarity=0.603  Sum_probs=141.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++++|++|+|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999999877666654 45566777888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ||++++.+++.+..|+..+..... .++|+++|+||+|+.+...+...+...++..++.+++++||++|.|++++|.++.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 5799999999999977666666677777777888999999999999999999998


Q ss_pred             HHc
Q 028546          168 AAL  170 (207)
Q Consensus       168 ~~~  170 (207)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-33  Score=190.57  Aligned_cols=175  Identities=38%  Similarity=0.667  Sum_probs=159.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .-.|||+++|..=+|||+|+-++..++|......+..-.+..+.+.+.+....+.||||+|+++|-.+-+.|++++++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            34599999999999999999999999998777777767777888888888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||+++.++|+.++.|...++...+..+-.++|+||+|+.+++.+..++++..+...+..++++||+++.||.++|+.|
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence            99999999999999999999999888788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCccCccccc
Q 028546          167 AAALPGMETLSSTKQ  181 (207)
Q Consensus       167 ~~~~~~~~~~~~~~~  181 (207)
                      ...+.+......+..
T Consensus       171 t~~MiE~~s~~qr~~  185 (218)
T KOG0088|consen  171 TAKMIEHSSQRQRTR  185 (218)
T ss_pred             HHHHHHHhhhccccc
Confidence            998877664444433

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=6.7e-32  Score=192.20  Aligned_cols=162  Identities=48%  Similarity=0.842  Sum_probs=147.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|++|+|||||++++.++.+.....++.+..+....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999998876777777777778888888889999999999999998888899999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      +|+++++++.....|+..+.......+|+++++||+|+.+.......+...+...++++++++|+++|.|++++|++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877667999999999998777777777888888888899999999999999999999998


Q ss_pred             Hc
Q 028546          169 AL  170 (207)
Q Consensus       169 ~~  170 (207)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6.8e-32  Score=192.85  Aligned_cols=161  Identities=32%  Similarity=0.585  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999998888777888888877777777888899999999999999888889999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.+++.+..|+..+..... ++|+++|+||+|+.+ ..... ....++...+++++++||++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999987765 799999999999863 33333 3345566677899999999999999999999988


Q ss_pred             cCCC
Q 028546          170 LPGM  173 (207)
Q Consensus       170 ~~~~  173 (207)
                      +...
T Consensus       158 ~~~~  161 (166)
T cd00877         158 LLGN  161 (166)
T ss_pred             HHhc
Confidence            8643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=1.2e-31  Score=192.26  Aligned_cols=163  Identities=39%  Similarity=0.631  Sum_probs=144.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +..+||+++|++|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||+||++++..++..+++++|++|
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45699999999999999999999999998877788877777778888898899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKP  161 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  161 (207)
                      +|||++++.+++.+..|+..+....    ..+.|+++|+||.|+. .+.+..+++..+++.+++ +++++|+++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            9999999999999999998876543    2468999999999985 556677788888888874 899999999999999


Q ss_pred             HHHHHHHHc
Q 028546          162 LFRKIAAAL  170 (207)
Q Consensus       162 ~~~~l~~~~  170 (207)
                      +|+++++.+
T Consensus       162 ~~~~~~~~~  170 (170)
T cd04116         162 AFEEAVRRV  170 (170)
T ss_pred             HHHHHHhhC
Confidence            999998753

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=8.2e-32  Score=191.53  Aligned_cols=160  Identities=29%  Similarity=0.540  Sum_probs=137.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+|+|||||++++..+.+.....++.+.++......+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998777777666666667778888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.+++.+..|+..+.... .+.|+++|+||+|+...   ...+...++...+++++++|+++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987654 36899999999998422   1233445566678899999999999999999999988


Q ss_pred             cCCC
Q 028546          170 LPGM  173 (207)
Q Consensus       170 ~~~~  173 (207)
                      +.++
T Consensus       157 ~~~~  160 (161)
T cd04124         157 AVSY  160 (161)
T ss_pred             HHhc
Confidence            7654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8e-32  Score=193.80  Aligned_cols=158  Identities=34%  Similarity=0.541  Sum_probs=137.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+|+|||||+.+++.+.+...+.++.. +.....+.+++..+++.+|||+|++.+...+..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999877777765 444556677888899999999999999999999999999999999


Q ss_pred             ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546           90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (207)
                      |++++++|+.+. .|+..+.... .+.|++||+||.|+.+.            +.+..++...++..++. ++++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6888776654 47999999999998543            24677888888888885 999999999


Q ss_pred             CCChHHHHHHHHHH
Q 028546          156 GFNIKPLFRKIAAA  169 (207)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (207)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=7e-32  Score=192.62  Aligned_cols=159  Identities=32%  Similarity=0.504  Sum_probs=137.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++++++.+...+.++.+.. ....+..+...+.+.+||+||++++..++..++..+|++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            799999999999999999999999877766665533 3445566777789999999999999988888999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |++++++++.+..|+..+.....   .++|+++|+||+|+.+.+++........+..+++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999888766432   568999999999997767777777777888888999999999999999999999


Q ss_pred             HHH
Q 028546          167 AAA  169 (207)
Q Consensus       167 ~~~  169 (207)
                      +.+
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.3e-32  Score=192.55  Aligned_cols=161  Identities=37%  Similarity=0.606  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+|+|++|+|||||++++.+..+...+.++.+ +.....+.+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999988776666555 334556677888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++++++++.+..|+..+..... .+.|+++|+||+|+.+.+....+....++..++.+++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766543 46899999999999777777777778888888999999999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.1e-31  Score=192.43  Aligned_cols=162  Identities=39%  Similarity=0.655  Sum_probs=146.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-cccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~il   87 (207)
                      .+||+++|++|+|||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||++|++++. ..+..+++++|++|+
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999999887778888888888888889988999999999999886 468888999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC---CCChHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA---GFNIKPLF  163 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  163 (207)
                      |||++++.++..+..|+..+.... ..++|+++|+||+|+...+++..+....++..++++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887754 35799999999999988888888888888888899999999999   88999999


Q ss_pred             HHHHHHc
Q 028546          164 RKIAAAL  170 (207)
Q Consensus       164 ~~l~~~~  170 (207)
                      ..|.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.1e-31  Score=191.28  Aligned_cols=162  Identities=32%  Similarity=0.547  Sum_probs=140.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +.+||+++|++|+|||||++++++..+...+.++.+.. ......+++..+.+.+||+||+.++..++..+++++|++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            35899999999999999999999988876666666533 34456678888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||+++..+++.+..|+..+.... ..+.|+++++||+|+.....+.......++...+++++++|+++|.|++++|++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999998887653 3468999999999997777677777778888888999999999999999999999


Q ss_pred             HHHc
Q 028546          167 AAAL  170 (207)
Q Consensus       167 ~~~~  170 (207)
                      +..+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=1.5e-31  Score=194.95  Aligned_cols=161  Identities=32%  Similarity=0.527  Sum_probs=137.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      .||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..++.++|++|+||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            4899999999999999999999999877777776554 345567777789999999999999999999999999999999


Q ss_pred             ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEEecCC
Q 028546           90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFG-VMFIETSAKA  155 (207)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (207)
                      |++++.+|+.+. .|+..+..... +.|+++|+||.|+.+..            .+..++...++...+ +.+++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999985 68888876543 69999999999986543            244556667777776 6899999999


Q ss_pred             CCChHHHHHHHHHHcCC
Q 028546          156 GFNIKPLFRKIAAALPG  172 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~  172 (207)
                      |.|++++|.+|.+.+..
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998863

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.8e-31  Score=189.58  Aligned_cols=160  Identities=33%  Similarity=0.565  Sum_probs=138.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            4799999999999999999999998877766666543 355567788778899999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ||+++..+++.+..|+..+..... .+.|+++|+||+|+.+ +.........++...+++++++|+++|.|++++|++|+
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876543 4789999999999865 44556667777788889999999999999999999998


Q ss_pred             HHc
Q 028546          168 AAL  170 (207)
Q Consensus       168 ~~~  170 (207)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            764

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=4.6e-31  Score=187.43  Aligned_cols=161  Identities=40%  Similarity=0.723  Sum_probs=143.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++++++.+...+.++.+.......+...+..+.+.+||+||+..+...+..++.++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999999887666667666776777777777789999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++++++.+..|+..+......++|+++++||+|+.+...+..+.........++.++++|++++.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776679999999999998777777777788888889999999999999999999999876


Q ss_pred             c
Q 028546          170 L  170 (207)
Q Consensus       170 ~  170 (207)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            4

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.3e-31  Score=194.80  Aligned_cols=165  Identities=24%  Similarity=0.352  Sum_probs=137.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------ccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIRD   81 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   81 (207)
                      +||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999998877888877776677778888889999999996543221        2334789


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCC
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKAGF  157 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  157 (207)
                      +|++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+.+.+....++...++. .++++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887654   4579999999999997666666666665544 568999999999999


Q ss_pred             ChHHHHHHHHHHcCCCc
Q 028546          158 NIKPLFRKIAAALPGME  174 (207)
Q Consensus       158 ~i~~~~~~l~~~~~~~~  174 (207)
                      |++++|+.++..+....
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999999877443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=3.8e-31  Score=199.39  Aligned_cols=161  Identities=29%  Similarity=0.472  Sum_probs=139.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+|+|||||+++|+.+.+...+.++.+ +.....+.+++..+.+.||||+|++.+..+...++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999877667665 556677788888899999999999998888888889999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCh
Q 028546           90 DVANRQSFLNTSRWIEEVRTE---------RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNI  159 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  159 (207)
                      |+++.++|+.+..|+..+...         ...++|+++|+||+|+.+.+++..+++..++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999888653         224789999999999976667777777766653 4678999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028546          160 KPLFRKIAAALP  171 (207)
Q Consensus       160 ~~~~~~l~~~~~  171 (207)
                      +++|++|.+.+.
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999999764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=4.4e-31  Score=188.17  Aligned_cols=160  Identities=38%  Similarity=0.604  Sum_probs=139.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +||+++|++|||||||++++..+  .+...+.++.+.++......++ +..+++.+||+||+..+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  6777778888878777766665 46689999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+..++.......+...++++++++|+.++.|++++|++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999987764 358999999999997777777666666777778899999999999999999999


Q ss_pred             HHHc
Q 028546          167 AAAL  170 (207)
Q Consensus       167 ~~~~  170 (207)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04101         160 ARAF  163 (164)
T ss_pred             HHHh
Confidence            9875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1e-30  Score=187.65  Aligned_cols=164  Identities=41%  Similarity=0.685  Sum_probs=143.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||++++....+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988777778777777777888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~  164 (207)
                      |++++.+++.+..|+..+.....    .++|+++|+||+|+..+.....+....+....+ .+++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888887655443    368999999999997666666777777777777 7999999999999999999


Q ss_pred             HHHHHcCCC
Q 028546          165 KIAAALPGM  173 (207)
Q Consensus       165 ~l~~~~~~~  173 (207)
                      ++.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999887654

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=8.9e-31  Score=191.56  Aligned_cols=156  Identities=30%  Similarity=0.545  Sum_probs=138.5

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCCh
Q 028546           15 LGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR   94 (207)
Q Consensus        15 ~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~   94 (207)
                      +|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999999888888888888888888888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546           95 QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus        95 ~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      .+|+.+..|+..+.... .++|+++|+||+|+.. +.+..+. ..++...++.+++|||++|.|++++|.+|++.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999998765 3799999999999853 3444433 456777889999999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.7e-31  Score=175.56  Aligned_cols=167  Identities=36%  Similarity=0.655  Sum_probs=155.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +...-+|.+++|.-|+|||+|+++|...+|...-..+.+.++-.+.+.+.+..+++.+||++|+++|+...+.|++++.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            33445899999999999999999999999876667788889999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      .++|||+++..+++.+..|+...+...+++..+++++||.|+.+.+.+..++++.++.+.++.++++|+++|.++++.|-
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            99999999999999999999999999888899999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHcC
Q 028546          165 KIAAALP  171 (207)
Q Consensus       165 ~l~~~~~  171 (207)
                      ...+.+.
T Consensus       167 e~akkiy  173 (215)
T KOG0097|consen  167 ETAKKIY  173 (215)
T ss_pred             HHHHHHH
Confidence            7776654

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=2.7e-30  Score=184.98  Aligned_cols=164  Identities=38%  Similarity=0.670  Sum_probs=145.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+++|++|+|||||++++..+.+.....++.+.+.....+.+.+..+.+.+||+||+..+...+..++..+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            34599999999999999999999988887777777777787888888888889999999999999998889999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+.......+|+++|+||+|+.+.+++.......+.......++++|+++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i  164 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL  164 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999998877766679999999999998777777666677777777889999999999999999999


Q ss_pred             HHHc
Q 028546          167 AAAL  170 (207)
Q Consensus       167 ~~~~  170 (207)
                      .+.+
T Consensus       165 ~~~~  168 (169)
T cd04114         165 ACRL  168 (169)
T ss_pred             HHHh
Confidence            8764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=1.4e-30  Score=186.50  Aligned_cols=161  Identities=34%  Similarity=0.544  Sum_probs=141.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|.+|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++++..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            479999999999999999999999987776776653 3456677888888999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      ||++++++++.+..|+..+.... ..+.|+++++||.|+.+.+....++...+++.++ ++++++||++|.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999998887643 3579999999999998777777777778888887 799999999999999999999


Q ss_pred             HHHc
Q 028546          167 AAAL  170 (207)
Q Consensus       167 ~~~~  170 (207)
                      ...+
T Consensus       160 ~~~~  163 (168)
T cd04177         160 VRQI  163 (168)
T ss_pred             HHHH
Confidence            8765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.98  E-value=1.4e-30  Score=183.91  Aligned_cols=159  Identities=52%  Similarity=0.890  Sum_probs=145.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++++|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998888888888888888888888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++++++++.+..|+..+........|+++++||+|+..+.....++...+...++.+++++|++++.|+++++++|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999998887567999999999999766777788888888888999999999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=3.8e-30  Score=182.83  Aligned_cols=160  Identities=42%  Similarity=0.738  Sum_probs=140.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887767777777777777777887889999999999999988899999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++++.+++.+..|+..+..... .+.|+++++||+|+. ......++...++...+++++++|+++|.|++++++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999998877643 578999999999986 3445566777888888999999999999999999999987


Q ss_pred             Hc
Q 028546          169 AL  170 (207)
Q Consensus       169 ~~  170 (207)
                      .+
T Consensus       160 ~~  161 (161)
T cd01863         160 KI  161 (161)
T ss_pred             hC
Confidence            63

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=1.7e-30  Score=186.95  Aligned_cols=158  Identities=33%  Similarity=0.546  Sum_probs=135.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEEC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV   91 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~   91 (207)
                      |+|+|++|+|||||+++|.++.+...+.++.... ....+.+++..+.+.+|||||++.+..++..++.++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            5899999999999999999999987766665533 345667788888999999999999999999999999999999999


Q ss_pred             CChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546           92 ANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETSAKAGF  157 (207)
Q Consensus        92 ~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (207)
                      +++++|+.+. .|+..+..... +.|+++|+||.|+.+..            .+..++...++..++. .++++|+++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 58888876554 69999999999986532            2666777888888886 99999999999


Q ss_pred             ChHHHHHHHHHHcC
Q 028546          158 NIKPLFRKIAAALP  171 (207)
Q Consensus       158 ~i~~~~~~l~~~~~  171 (207)
                      |++++|+.+++.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.98  E-value=2.2e-30  Score=189.05  Aligned_cols=158  Identities=30%  Similarity=0.403  Sum_probs=128.4

Q ss_pred             ceeEEEEcCCCCCHHHHHH-HHhcCC-----CCCccccccce-eeeEEE--------EEECCeEEEEEEEecCChhhhcc
Q 028546            9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDTTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS   73 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   73 (207)
                      .+||+++|..|+|||||+. ++..+.     +...+.|+.+. +.....        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4899999999999999996 555443     34455566531 222221        25678889999999999875  2


Q ss_pred             ccccccccCCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CCCCC
Q 028546           74 LIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD-------------------KRQVS  133 (207)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  133 (207)
                      ....+++++|++|+|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999996 5988887655 3689999999999864                   36778


Q ss_pred             HHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546          134 IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .++++.+++.++++|++|||++|.|++++|+.++++
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.6e-30  Score=185.53  Aligned_cols=160  Identities=31%  Similarity=0.529  Sum_probs=135.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hccccccccccCCEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~ilv~   89 (207)
                      ||+++|++|+|||||+++++.+.+...+.++.... ....+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999888866655555433 345567788888999999999885 3456677889999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC-CChHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG-FNIKPLFRKI  166 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~l  166 (207)
                      |++++.+|+.+..|+..+....  ..+.|+++|+||+|+.+.+.+..++...++...+++++++|+++| .|++++|..|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887654  357999999999998777777788888888888999999999999 5999999999


Q ss_pred             HHHcC
Q 028546          167 AAALP  171 (207)
Q Consensus       167 ~~~~~  171 (207)
                      .+.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=3.4e-30  Score=182.44  Aligned_cols=154  Identities=18%  Similarity=0.371  Sum_probs=129.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|+.|+|||||+.+++.+.|...+.++.+ . ....+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-R-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-c-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999999888765544322 2 346678888888999999999864     34668899999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |++++.+|+.+..|+..+..... ..+|+++|+||.|+.  +.+++..++.+.+++.. ++.+++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987654 568999999999985  35677777778888776 489999999999999999999


Q ss_pred             HHHHc
Q 028546          166 IAAAL  170 (207)
Q Consensus       166 l~~~~  170 (207)
                      +++.+
T Consensus       154 ~~~~~  158 (158)
T cd04103         154 AAQKI  158 (158)
T ss_pred             HHhhC
Confidence            98653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=5.2e-30  Score=184.31  Aligned_cols=157  Identities=36%  Similarity=0.574  Sum_probs=135.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +|++++|++|+|||||+.++..+.+...+.++. .+.....+.+++..+.+.+||+||+.++...+..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            689999999999999999999998887766665 4555566778888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546           90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (207)
                      |++++.+|+.+. .|+..+.... .+.|+++++||.|+.+            .+.+..+++..+++..+. +++++|+++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999974 6888777543 3689999999999863            345677788888888887 899999999


Q ss_pred             CCChHHHHHHHHH
Q 028546          156 GFNIKPLFRKIAA  168 (207)
Q Consensus       156 ~~~i~~~~~~l~~  168 (207)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-32  Score=185.36  Aligned_cols=169  Identities=37%  Similarity=0.605  Sum_probs=152.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC---------CeEEEEEEEecCChhhhccccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERFRSLIP   76 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~   76 (207)
                      ...-+|.+.+|..|+|||+|+.++..++|....+.+.++++..+.+.++         +..+-+++|||+|+++|+++..
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            3345789999999999999999999999999989999999988877663         3457899999999999999999


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA  155 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (207)
                      .+++.|.+++++||+++..+|-++..|+.++..+. ..++-+++++||.|+.+.+.+..+.+..+++++++|+|++||-+
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t  165 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT  165 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence            99999999999999999999999999999987654 24566999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHcCCCc
Q 028546          156 GFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~~~  174 (207)
                      |.|+++..+.|+.++..+-
T Consensus       166 g~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  166 GTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             CcCHHHHHHHHHHHHHHHH
Confidence            9999999999999876543

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.9e-30  Score=185.87  Aligned_cols=162  Identities=23%  Similarity=0.307  Sum_probs=138.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +-+||+++|.+|+|||||+++|+++.+. ..+.++.+.++....+.+++..+.+.+||++|+..+..++..++.++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4589999999999999999999999998 778888887777777888888889999999999999888999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.+++.+..|+..+...  .++|+++|+||+|+.+...........++..+++ .++++||++|.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999998888866322  3689999999999865544433344566677776 4799999999999999999


Q ss_pred             HHHHcC
Q 028546          166 IAAALP  171 (207)
Q Consensus       166 l~~~~~  171 (207)
                      |.+.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            999865

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=7.1e-30  Score=183.69  Aligned_cols=159  Identities=33%  Similarity=0.532  Sum_probs=135.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..++.++|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999998766666554 334446677888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546           90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (207)
                      |++++.+|+.+. .|+..+... ..+.|+++|+||+|+.+.            ..+..+++..+++.+++ +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 577777655 557999999999998543            25666777888888886 799999999


Q ss_pred             CCChHHHHHHHHHHc
Q 028546          156 GFNIKPLFRKIAAAL  170 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~  170 (207)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=5.4e-30  Score=190.74  Aligned_cols=163  Identities=33%  Similarity=0.476  Sum_probs=137.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc-cCCEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVI   87 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~il   87 (207)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.+....++.+++..+.+.+||++|++.+  ....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999988886 555565555667777888888889999999998722  2334556 8999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999887654 2579999999999998777777777778888889999999999999999999999


Q ss_pred             HHHcCCCc
Q 028546          167 AAALPGME  174 (207)
Q Consensus       167 ~~~~~~~~  174 (207)
                      +..+....
T Consensus       159 ~~~~~~~~  166 (221)
T cd04148         159 VRQIRLRR  166 (221)
T ss_pred             HHHHHhhh
Confidence            99886433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=8.2e-32  Score=176.83  Aligned_cols=174  Identities=39%  Similarity=0.688  Sum_probs=159.4

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEEC
Q 028546           13 VFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDV   91 (207)
Q Consensus        13 ~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~   91 (207)
                      +++|..++|||+|+-+|..+.|- ....++.++++..+.+..++..+++++|||+|+++|++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            36899999999999999887774 55678999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546           92 ANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus        92 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      .+..+|++.+.|+.++.++....+.+.+++||+|+..++.+..++.+.++..+++++.++|+++|.|++-.|-.|.+.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999999999999988878889999999999999999999999999999999999999999999999999999988


Q ss_pred             CCccCcccccccccc
Q 028546          172 GMETLSSTKQEDMVD  186 (207)
Q Consensus       172 ~~~~~~~~~~~~~~~  186 (207)
                      ...-..++...-...
T Consensus       161 k~~~~~~~~~~~~~~  175 (192)
T KOG0083|consen  161 KLKMGAPPEGEFADH  175 (192)
T ss_pred             HhccCCCCCCccccc
Confidence            777777666644433

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=3.2e-29  Score=178.39  Aligned_cols=161  Identities=35%  Similarity=0.606  Sum_probs=139.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++++...+...+.++.. +........++..+.+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888766555554 334455677888889999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++++.++..+..|+..+..... .++|+++|+||+|+.+...........+...++++++++|+++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999988877633 47999999999999765556667777788888899999999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=3.4e-29  Score=177.45  Aligned_cols=159  Identities=41%  Similarity=0.634  Sum_probs=140.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++|+|||||++++++..+.....++.. +.....+..++..+.+.+||+||...+...+..++..+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887766666665 5556667777777899999999999998889999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      +++++++..+..|+..+..... ..+|+++|+||+|+.+.+....+.+..++..++.+++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988877665 579999999999998767777788888888888999999999999999999999876


Q ss_pred             c
Q 028546          170 L  170 (207)
Q Consensus       170 ~  170 (207)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            4

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=7.5e-29  Score=181.97  Aligned_cols=164  Identities=31%  Similarity=0.500  Sum_probs=134.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++|+|||||+++|++..+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|||||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988766555553 4445567778877899999999999988888889999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HhCCeEEEEecCCCCChHHHHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD-KRQVSIEEGDGKAK-EFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ++++.+++.+..|+..+..... .++|+++|+||+|+.. ...+.......... .++.+++++|+++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988876654 4799999999999865 34444444443333 4567899999999999999999999


Q ss_pred             HHcCCCcc
Q 028546          168 AALPGMET  175 (207)
Q Consensus       168 ~~~~~~~~  175 (207)
                      +.+.....
T Consensus       160 ~~~~~~~~  167 (198)
T cd04147         160 RQANLPYN  167 (198)
T ss_pred             HHhhcccc
Confidence            98764433

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.4e-28  Score=177.12  Aligned_cols=160  Identities=33%  Similarity=0.555  Sum_probs=132.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +.||+++|++|+|||||+++|..+.+...+.++.+... ...+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            36899999999999999999999999877777665443 34567788888999999999999998888889999999999


Q ss_pred             EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEecC
Q 028546           89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETSAK  154 (207)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s~~  154 (207)
                      ||+++.++++.+. .|+..+.... .+.|+++|+||.|+.+..            .+.....+.++..++. .+++|||+
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999998875 5777776543 368999999999986432            2334566667776664 89999999


Q ss_pred             CCCChHHHHHHHHHHc
Q 028546          155 AGFNIKPLFRKIAAAL  170 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~  170 (207)
                      +|.|++++|++|.+.+
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.3e-28  Score=179.15  Aligned_cols=164  Identities=35%  Similarity=0.562  Sum_probs=135.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +.||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......++.++|+++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            46899999999999999999998888766666554333 34566777778899999999988887777788999999999


Q ss_pred             EECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------CCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q 028546           89 YDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD----------KRQVSIEEGDGKAKEFGV-MFIETSAKAG  156 (207)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (207)
                      ||+++.++++.+. .|+..+..... +.|+++|+||+|+.+          .+....+....+++.++. .+|+|||++|
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            9999999999985 68888876654 599999999999854          233445677778888885 8999999999


Q ss_pred             CChHHHHHHHHHHcCCCc
Q 028546          157 FNIKPLFRKIAAALPGME  174 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~  174 (207)
                      .|++++|+++.+.+...+
T Consensus       159 ~~v~~~f~~l~~~~~~~~  176 (187)
T cd04129         159 EGVDDVFEAATRAALLVR  176 (187)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999998775443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=2.2e-28  Score=181.68  Aligned_cols=170  Identities=29%  Similarity=0.552  Sum_probs=148.1

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |+.+..+.++||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|+.++...+..++.
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            77888899999999999999999999999988888888888888888888878888899999999999999888888999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +++++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ..... ...++...++.++++|+++|.|++
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999999887654 46899999999998543 33333 235666778899999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      +.|.+|++.+...
T Consensus       158 ~~f~~ia~~l~~~  170 (215)
T PTZ00132        158 KPFLWLARRLTND  170 (215)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988654

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.7e-29  Score=183.13  Aligned_cols=167  Identities=22%  Similarity=0.338  Sum_probs=129.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +.+||+++|++|+|||||++++..+.+... .++.+.+.....+.. ++..+.+.+||+||++++..++..+++++|++|
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999999887654 555555554444443 335679999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--H----hCCeEEEEecCCCCCh
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK--E----FGVMFIETSAKAGFNI  159 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~s~~~~~~i  159 (207)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+....+..  .    .+++++++||++|.|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            9999999989988888887776543 246899999999998533  23333333322  1    1246899999999999


Q ss_pred             HHHHHHHHHHcCCCccCc
Q 028546          160 KPLFRKIAAALPGMETLS  177 (207)
Q Consensus       160 ~~~~~~l~~~~~~~~~~~  177 (207)
                      ++++++|.+.+.+.++-.
T Consensus       159 ~~l~~~l~~~l~~~~~~~  176 (183)
T cd04152         159 QEGLEKLYEMILKRRKML  176 (183)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999886444333

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=3.6e-29  Score=179.06  Aligned_cols=155  Identities=21%  Similarity=0.332  Sum_probs=122.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+++||+++|++++|||||++++..+.+.. +.++.+.++.  .+..  ..+.+.+||+||++++...+..++.++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            457999999999999999999999877753 3556555443  3333  3478999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  160 (207)
                      ||||++++.++..+..|+..+... ...++|++||+||+|+.+.  ...+++......     ..+.++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            999999999999988877766543 2346899999999998542  344445444321     23468999999999999


Q ss_pred             HHHHHHHH
Q 028546          161 PLFRKIAA  168 (207)
Q Consensus       161 ~~~~~l~~  168 (207)
                      ++|+||.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.6e-28  Score=177.62  Aligned_cols=163  Identities=34%  Similarity=0.514  Sum_probs=139.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      .||+++|++|+|||||++++.+..+...+.++..... ...+..++..+.+.+||+||+.++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999988766666554332 455667777788999999999999888889999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |+++..+++.+..|+..+..... .+.|+++|+||+|+...+.....+...++..++.+++++|++++.|+.++|.+|.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888876543 56899999999999766666666677777788889999999999999999999999


Q ss_pred             HcCCC
Q 028546          169 ALPGM  173 (207)
Q Consensus       169 ~~~~~  173 (207)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            87643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=2.3e-29  Score=181.21  Aligned_cols=158  Identities=22%  Similarity=0.320  Sum_probs=122.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+++|++|+|||||++++..+.+. .+.++.+.++.  .....  .+.+.+||+||++.+...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999999877774 34566665543  33333  378999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (207)
                      +|||++++.+++....|+..+.... ..++|++||+||.|+.+..  ..+++.....     ...+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999888888775432 2468999999999985432  2222222211     112347789999999999


Q ss_pred             HHHHHHHHHcC
Q 028546          161 PLFRKIAAALP  171 (207)
Q Consensus       161 ~~~~~l~~~~~  171 (207)
                      ++|+||.+.+.
T Consensus       164 e~~~~l~~~~~  174 (175)
T smart00177      164 EGLTWLSNNLK  174 (175)
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.1e-29  Score=181.10  Aligned_cols=153  Identities=20%  Similarity=0.270  Sum_probs=124.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      +|+++|++|+|||||+++|.++.+...+.++.+...    ..++...+++.+||+||+++++..+..+++++|++|+|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            489999999999999999999888777777766542    2234445799999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHhCCeEEEEecCC------CCChH
Q 028546           91 VANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI----EEGDGKAKEFGVMFIETSAKA------GFNIK  160 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~  160 (207)
                      .+++.++...+.|+..+.... .++|+++|+||.|+..++.+..    ..+..++++.++.++++|+++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999998888876543 4799999999999866543321    122444455678899999998      99999


Q ss_pred             HHHHHHHH
Q 028546          161 PLFRKIAA  168 (207)
Q Consensus       161 ~~~~~l~~  168 (207)
                      ++|+.|+.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=1.2e-28  Score=176.60  Aligned_cols=158  Identities=22%  Similarity=0.367  Sum_probs=125.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++++|||||++++.+..+.. +.++.+..+.  .+...  .+.+.+||+||+..+...+..+++++|+++||+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999987654 4555554442  33343  4789999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC------CeEEEEecCCCCChHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG------VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~  163 (207)
                      ++++.++..+..|+..+.... ..+.|+++|+||+|+.+  ....+++...+...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999988886542 24589999999999853  344555555443221      267899999999999999


Q ss_pred             HHHHHHcCCCcc
Q 028546          164 RKIAAALPGMET  175 (207)
Q Consensus       164 ~~l~~~~~~~~~  175 (207)
                      +||.+.+.+...
T Consensus       154 ~~l~~~~~~~~~  165 (169)
T cd04158         154 DWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHhhccc
Confidence            999988776543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.3e-28  Score=178.05  Aligned_cols=159  Identities=19%  Similarity=0.337  Sum_probs=123.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+++|.++||||||++++..+.+.. +.++.+.+..  .+...  .+.+.+||+||+++++.++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            456899999999999999999999877753 4566665442  33343  378999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-----CeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-----VMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~  160 (207)
                      +|||+++++++..+..++..+... ...++|++|++||+|+.+..  ..++.........     +.++++||++|.|++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            999999999999888777766432 22468999999999985443  3333332221111     235689999999999


Q ss_pred             HHHHHHHHHcCC
Q 028546          161 PLFRKIAAALPG  172 (207)
Q Consensus       161 ~~~~~l~~~~~~  172 (207)
                      ++|+||.+.+.+
T Consensus       168 e~~~~l~~~~~~  179 (181)
T PLN00223        168 EGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988754

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.97  E-value=1.1e-28  Score=179.36  Aligned_cols=164  Identities=37%  Similarity=0.618  Sum_probs=153.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      .++|++++|.+|+|||+|.-+|+++.|...+.|+.+ +.+.+.+.+++..+.+.|+||+|++.+..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999988 7778888899999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      ||++++..||+.+..+++.+..... ..+|+++|+||.|+...+.+..++.+.++..++++++++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999954443 568999999999999889999999999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      ...+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998875

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=4.2e-28  Score=173.84  Aligned_cols=157  Identities=38%  Similarity=0.599  Sum_probs=130.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|+++.+...+.++.. +.....+..++..+.+.+||+||+.++......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999999998666555554 444555677788889999999999988888888889999999999


Q ss_pred             ECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-----------CCHHHHHHHHHHhCC-eEEEEecCCC
Q 028546           90 DVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ-----------VSIEEGDGKAKEFGV-MFIETSAKAG  156 (207)
Q Consensus        90 d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (207)
                      |++++.++... ..|+..+..... +.|+++|+||+|+.+...           +..+....+...+++ +++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            99999998885 457776665544 799999999999876542           345666777777887 9999999999


Q ss_pred             CChHHHHHHHHH
Q 028546          157 FNIKPLFRKIAA  168 (207)
Q Consensus       157 ~~i~~~~~~l~~  168 (207)
                      .|++++|++|.+
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=5.8e-29  Score=176.48  Aligned_cols=152  Identities=21%  Similarity=0.345  Sum_probs=117.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+++|||||++++..+.+.. +.++.+.+..  .+...  .+.+.+||+||++++...+..+++++|++||||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            589999999999999999998887763 4566555432  33333  478999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHH----HhCCeEEEEecCCCCChHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEG-DGKAK----EFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~----~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      |+++..+++.+..|+..+... ...+.|++|++||+|+.+..  ...+. ..+..    ...+.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999988877776432 23468999999999985432  22222 22211    123357899999999999999


Q ss_pred             HHHHH
Q 028546          164 RKIAA  168 (207)
Q Consensus       164 ~~l~~  168 (207)
                      +||.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=8.1e-28  Score=174.14  Aligned_cols=158  Identities=20%  Similarity=0.325  Sum_probs=121.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+++||+++|++|+|||||++++..+.+.. +.++.+.++.  .+...  .+.+.+||+||++++...+..+++++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456999999999999999999998877764 4556555443  33333  478999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|++++++++....++..+... ...++|++||+||.|+.+..  ...++......     ..+.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999988777766432 22468999999999985432  22222221111     12356799999999999


Q ss_pred             HHHHHHHHHcC
Q 028546          161 PLFRKIAAALP  171 (207)
Q Consensus       161 ~~~~~l~~~~~  171 (207)
                      ++|+||.+.+.
T Consensus       168 e~~~~l~~~i~  178 (182)
T PTZ00133        168 EGLDWLSANIK  178 (182)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.7e-27  Score=174.16  Aligned_cols=149  Identities=22%  Similarity=0.338  Sum_probs=126.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-----CeEEEEEEEecCChhhhccccccccccCCE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +||+++|..|+|||||+++|..+.+...+.++.+.++..+.+.++     +..+.+.+||++|+++|..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877777776664     467899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCCCCCCHH----HHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-------------------GGDVIIVLVGNKTDLVDKRQVSIE----EGDGKA  141 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~  141 (207)
                      +|+|||++++.+++.+..|+..+....                   ..++|++||+||.|+.+++.+...    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987642                   246899999999999776655443    234567


Q ss_pred             HHhCCeEEEEecCCCCC
Q 028546          142 KEFGVMFIETSAKAGFN  158 (207)
Q Consensus       142 ~~~~~~~~~~s~~~~~~  158 (207)
                      ++.+++.++.+..++..
T Consensus       161 ~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         161 EQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HhcCCceEEEecCCccc
Confidence            88899988888886653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=6.1e-28  Score=173.53  Aligned_cols=155  Identities=24%  Similarity=0.357  Sum_probs=121.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +..++|+++|++|+|||||++++.+..+. ...++.+.  ....+.+++  +.+.+||+||++.+...+..++.++|+++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i   86 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI   86 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45689999999999999999999988553 33444443  233444443  68999999999999889999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|++++.++.....|+..+... ...++|+++|+||+|+.+..  ..+++.....     ..+++++++||++|.|++
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            999999999999988888777543 23579999999999986543  3344444332     235689999999999999


Q ss_pred             HHHHHHHH
Q 028546          161 PLFRKIAA  168 (207)
Q Consensus       161 ~~~~~l~~  168 (207)
                      ++|++|.+
T Consensus       165 ~l~~~l~~  172 (173)
T cd04154         165 QGIDWLVD  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=1.6e-27  Score=170.31  Aligned_cols=160  Identities=26%  Similarity=0.362  Sum_probs=123.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|.+|+|||||+++|.++.+...+..+ . ........+++..+.+.+||+||...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-L-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-c-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999999886553322 2 222333445667789999999999888777777889999999999


Q ss_pred             ECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHhC--CeEEEEecCCCCChHHHHH
Q 028546           90 DVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEFG--VMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        90 d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~  164 (207)
                      |++++.+++.+. .|+..+..... +.|+++|+||+|+.+.....  .+........+.  ..++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 67777766544 79999999999996655431  222233333332  3799999999999999999


Q ss_pred             HHHHHcCC
Q 028546          165 KIAAALPG  172 (207)
Q Consensus       165 ~l~~~~~~  172 (207)
                      .+.+.+..
T Consensus       158 ~~~~~~~~  165 (166)
T cd01893         158 YAQKAVLH  165 (166)
T ss_pred             HHHHHhcC
Confidence            99987653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=3.2e-27  Score=169.72  Aligned_cols=145  Identities=68%  Similarity=1.070  Sum_probs=130.1

Q ss_pred             CCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc
Q 028546           32 DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER  111 (207)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~  111 (207)
                      +.|.+.+.++.+.++....+.+++..+.+.||||+|++++...+..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677788899999988888999999999999999999999999999999999999999999999999999999987766


Q ss_pred             CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCCccC
Q 028546          112 GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL  176 (207)
Q Consensus       112 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~  176 (207)
                      ...+|++||+||+|+.+.+.+..++...++..+++.++++||++|.|++++|++|++.+.+.+..
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            56789999999999977677788888888888899999999999999999999999998765533

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.7e-27  Score=171.34  Aligned_cols=155  Identities=21%  Similarity=0.364  Sum_probs=120.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||++++..+.+.. ..++.+.++  ..+..+  .+.+.+||+||+..+...+..+++++|++|
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            457999999999999999999999888764 345554443  233344  368999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (207)
                      ||+|+++++++.....++..+.... ..++|+++++||+|+.+.  ...++.....     ...+++++++||++|.|++
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~  165 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP  165 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence            9999999988888877777664432 246899999999998542  2333322221     2234579999999999999


Q ss_pred             HHHHHHHH
Q 028546          161 PLFRKIAA  168 (207)
Q Consensus       161 ~~~~~l~~  168 (207)
                      ++|++|.+
T Consensus       166 e~~~~l~~  173 (174)
T cd04153         166 EGLDWIAS  173 (174)
T ss_pred             HHHHHHhc
Confidence            99999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=5.4e-30  Score=176.34  Aligned_cols=176  Identities=35%  Similarity=0.557  Sum_probs=163.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |.+.....-+|++|+|..++||||+|++++.+-|...+..+.+.++..+.+.+.+..++..+||++|++.|......|++
T Consensus        12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr   91 (246)
T KOG4252|consen   12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR   91 (246)
T ss_pred             CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            34444455699999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +|.+-++||+-++..+|+.+.+|+..+....+ .+|.++|-||+|+.++..+...+++.+++.+.+.++.+|.+...|+.
T Consensus        92 gaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   92 GAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVM  170 (246)
T ss_pred             cccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhH
Confidence            99999999999999999999999999998887 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccCc
Q 028546          161 PLFRKIAAALPGMETLS  177 (207)
Q Consensus       161 ~~~~~l~~~~~~~~~~~  177 (207)
                      .+|.+|++.+....+++
T Consensus       171 ~vF~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKKQS  187 (246)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999887665543

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=2.6e-27  Score=169.33  Aligned_cols=153  Identities=19%  Similarity=0.236  Sum_probs=118.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      +|+++|++|||||||++++.+. +...+.++.+..  ...+...+  +.+.+||+||+..++.++..+++++|++|||||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999977 555556666543  33444443  789999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCH-HH---HHHHHHHh--CCeEEEEecCCC------C
Q 028546           91 VANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSI-EE---GDGKAKEF--GVMFIETSAKAG------F  157 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~-~~---~~~~~~~~--~~~~~~~s~~~~------~  157 (207)
                      +++..+++.+..|+..+..... .++|+++|+||.|+.+.+.... ..   ...++...  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999988865432 4689999999999865442111 11   11222222  346788999998      8


Q ss_pred             ChHHHHHHHHH
Q 028546          158 NIKPLFRKIAA  168 (207)
Q Consensus       158 ~i~~~~~~l~~  168 (207)
                      |+.+.|+||.+
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=1.8e-27  Score=169.17  Aligned_cols=152  Identities=18%  Similarity=0.250  Sum_probs=116.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +|+++|++|+|||||+++|.+..+ ...+.++.+....  .+..  ..+.+.+||+||+.++...+..+++++|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998764 4445566554332  2222  3468999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~  161 (207)
                      |++++.++..+..|+..+....   ..++|+++|+||+|+.+...  ..+......     ....+++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999988888887775432   24699999999999864322  222221111     1134689999999999999


Q ss_pred             HHHHHHH
Q 028546          162 LFRKIAA  168 (207)
Q Consensus       162 ~~~~l~~  168 (207)
                      +|+||.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=8.9e-27  Score=169.91  Aligned_cols=157  Identities=22%  Similarity=0.306  Sum_probs=123.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|++|||||||++++.++.+. .+.++.+.  ....+.+++  ..+.+||+||+..+...+..+++++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999999988774 33444433  334455554  68999999999998888899999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------hCCeEE
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----------------FGVMFI  149 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  149 (207)
                      +|+|+++..++.....|+..+.... ..+.|+++++||+|+.+  ....+..+.....                ...+++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            9999999988988888887775433 24689999999999854  3445555554432                224689


Q ss_pred             EEecCCCCChHHHHHHHHHHc
Q 028546          150 ETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      +|||++|.|++++|+||.+.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.5e-26  Score=166.39  Aligned_cols=157  Identities=24%  Similarity=0.376  Sum_probs=125.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|+.|||||||++++..+.+.. ..|+.+...  ..+...+  +.+.+||.+|+..++..|..|+.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            678999999999999999999998776543 455555443  4455555  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------HhCCeEEEEecCCCCCh
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK------EFGVMFIETSAKAGFNI  159 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i  159 (207)
                      ||+|.++.+.+......+..+... ...++|+++++||.|+.+.  ...+++.....      ...+.++.||+.+|.|+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            999999988888888777776553 2357999999999998654  33444443322      22446899999999999


Q ss_pred             HHHHHHHHHHc
Q 028546          160 KPLFRKIAAAL  170 (207)
Q Consensus       160 ~~~~~~l~~~~  170 (207)
                      .+.++||.+.+
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=4.2e-27  Score=167.66  Aligned_cols=167  Identities=34%  Similarity=0.527  Sum_probs=148.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +..+|++|||+.++|||+|+..+..+.|+..+.|+.- +.+...+.++ +..+.+.+|||+|+++|.......+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3569999999999999999999999999999999987 6677778884 9999999999999999999888889999999


Q ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEE
Q 028546           86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIET  151 (207)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  151 (207)
                      +++|++.++.+|+++ .+|+.++....+ ++|+++|++|.||.++            ..+..++...+++++|. .+++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999995 889999988775 7999999999999743            24667888999999994 89999


Q ss_pred             ecCCCCChHHHHHHHHHHcCCCcc
Q 028546          152 SAKAGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      |++++.|++++|+..+........
T Consensus       160 Sa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999998875544

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=6e-27  Score=166.16  Aligned_cols=152  Identities=25%  Similarity=0.414  Sum_probs=116.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      +|+++|++|+|||||+++|.+..+... .++.+.+.  ..+... ..+.+.+||+||+..+...+..++.++|++|+|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887643 45544433  333333 34689999999999998889999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH------HHhCCeEEEEecCCCCChHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA------KEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      ++++.++..+..|+..+.... ..+.|+++|+||+|+.+..  ...++....      ...+++++++||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999988998888887765432 2479999999999985322  222222111      1123478999999999999999


Q ss_pred             HHHHH
Q 028546          164 RKIAA  168 (207)
Q Consensus       164 ~~l~~  168 (207)
                      ++|.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=2.3e-26  Score=164.32  Aligned_cols=152  Identities=24%  Similarity=0.398  Sum_probs=115.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +|+++|++|+|||||++++.+...      ...+.++.+.+.  ..+.+++  ..+.+||+||++.+..++..++.++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999976432      122233333333  3444543  689999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------hCCeEEEEecCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-------FGVMFIETSAKAG  156 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~  156 (207)
                      +++|+|+++++++.....|+..+.... ..+.|+++++||+|+.+.  ....+.......       .+.+++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999888888888887765532 246899999999998543  233333333322       2457999999999


Q ss_pred             CChHHHHHHHHH
Q 028546          157 FNIKPLFRKIAA  168 (207)
Q Consensus       157 ~~i~~~~~~l~~  168 (207)
                      .|++++++||.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999964

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=7.5e-27  Score=165.45  Aligned_cols=151  Identities=22%  Similarity=0.338  Sum_probs=112.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++++|||||++++..+.+... .++.+.+.  ..+..  ....+.+||+||+.++...+..++..+|++|+|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTT-IPTIGFNV--ETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCc-CCccCcCe--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            689999999999999999987776532 34444333  23333  34689999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      ++++.++.....++..+.. ....++|+++|+||+|+.+...  ..+......     ..+.+++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            9998888776666654433 2224689999999999864431  222221111     1234699999999999999999


Q ss_pred             HHHH
Q 028546          165 KIAA  168 (207)
Q Consensus       165 ~l~~  168 (207)
                      +|.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=4.6e-26  Score=165.28  Aligned_cols=156  Identities=19%  Similarity=0.254  Sum_probs=120.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||++++.++.+.. +.++.+.  ....+.+.+  +++.+||+||+..+...+..++.++|++|
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            456999999999999999999999887643 2333332  223344444  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEec
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE------------FGVMFIETSA  153 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  153 (207)
                      +|+|++++.++.....++..+.... ..+.|+++|+||+|+..  .+..+++......            ....+++||+
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999999988887777765432 24689999999999853  3444444433211            1235899999


Q ss_pred             CCCCChHHHHHHHHHH
Q 028546          154 KAGFNIKPLFRKIAAA  169 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~  169 (207)
                      ++|.|++++++||...
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.7e-26  Score=163.58  Aligned_cols=151  Identities=23%  Similarity=0.328  Sum_probs=118.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++|+|||||++++.+..+. ...++.+...  ..+.+.+  +.+.+||+||+..+...+..++.++|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988743 3344444333  3344443  689999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      ++++.++.....|+..+.... ..+.|+++++||+|+....  ..++......     ....+++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999888887775533 3578999999999986543  2333333322     2345899999999999999999


Q ss_pred             HHHH
Q 028546          165 KIAA  168 (207)
Q Consensus       165 ~l~~  168 (207)
                      +|..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9975

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=172.39  Aligned_cols=142  Identities=22%  Similarity=0.394  Sum_probs=121.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-------------eEEEEEEEecCChhhh
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-------------RTVRLQLWDTAGQERF   71 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~G~~~~   71 (207)
                      .....+||+++|..|+|||||+++|.++.+...+.++.+.++..+.+.+++             ..+.+.|||++|+++|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            455679999999999999999999999999888888888877777666642             4578999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCCC---C---CC
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG------------GDVIIVLVGNKTDLVDKR---Q---VS  133 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~  133 (207)
                      ..++..+++++|++|+|||+++..+++.+..|+..+.....            .++|++||+||+|+.+.+   .   ..
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987531            358999999999996543   2   35


Q ss_pred             HHHHHHHHHHhCC
Q 028546          134 IEEGDGKAKEFGV  146 (207)
Q Consensus       134 ~~~~~~~~~~~~~  146 (207)
                      .+.++.++...++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7888999988774

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=9.8e-26  Score=161.17  Aligned_cols=155  Identities=17%  Similarity=0.182  Sum_probs=110.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---------cccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIRD   81 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~~~   81 (207)
                      +|+++|.+|+|||||+++|.+..+.....+..+.+.....+...  .+.+.+|||||......         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999988754333333444444443333  36899999999742110         01111123


Q ss_pred             CCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           82 SSVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      +|++|+|+|+++..+  ++....|+..+.... .+.|+++|+||+|+.+..+...  ...+....+.+++++|+++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCCH
Confidence            689999999997654  355667777776544 3689999999999865544322  34444445678999999999999


Q ss_pred             HHHHHHHHHHc
Q 028546          160 KPLFRKIAAAL  170 (207)
Q Consensus       160 ~~~~~~l~~~~  170 (207)
                      ++++++|.+.+
T Consensus       157 ~~l~~~l~~~~  167 (168)
T cd01897         157 DEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.6e-25  Score=160.38  Aligned_cols=158  Identities=19%  Similarity=0.191  Sum_probs=114.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----hccccccc---cccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   83 (207)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+...+. ..+.+|||||...    ...+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976653222233333333334444442 3899999999642    11223333   34699


Q ss_pred             EEEEEEECCCh-HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCh
Q 028546           84 VAVIVYDVANR-QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNI  159 (207)
Q Consensus        84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  159 (207)
                      ++++|+|++++ .+++.+..|++.+.....  ..+|+++|+||+|+.+.... ......+... .+.+++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999998 788888888888876542  36899999999998665443 3334444444 3678999999999999


Q ss_pred             HHHHHHHHHHc
Q 028546          160 KPLFRKIAAAL  170 (207)
Q Consensus       160 ~~~~~~l~~~~  170 (207)
                      +++|++|.+++
T Consensus       160 ~~l~~~i~~~~  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHhhC
Confidence            99999998763

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=2.1e-25  Score=174.43  Aligned_cols=163  Identities=16%  Similarity=0.132  Sum_probs=124.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-------hccccccccccC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS   82 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~   82 (207)
                      ..|+++|.|+||||||++++..........+.++.......+.+.+. .++.+||+||...       +...+...++.+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            46899999999999999999987655444566666766666666432 4799999999642       222233456789


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +++|+|+|+++.++++.+..|...+.....  .++|+++|+||+|+.+..+........+....+.+++++||+++.|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999987788888889888876543  368999999999997655444334444445566899999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      +++++|.+.+.+.
T Consensus       318 eL~~~L~~~l~~~  330 (335)
T PRK12299        318 ELLRALWELLEEA  330 (335)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=2.5e-25  Score=157.14  Aligned_cols=152  Identities=24%  Similarity=0.370  Sum_probs=119.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      .|+++|++|+|||||++++.+..+...+.++.+.+...  +...+  +.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            47999999999999999999999887777777665543  33333  689999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChHHHHH
Q 028546           91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +++..++.....|+..+.... ..++|+++|+||+|+.+....  .......     ....++++++|+++|.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999888888877777765432 246899999999998654322  1111111     12235789999999999999999


Q ss_pred             HHHH
Q 028546          165 KIAA  168 (207)
Q Consensus       165 ~l~~  168 (207)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9976

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=3.3e-25  Score=160.06  Aligned_cols=155  Identities=19%  Similarity=0.268  Sum_probs=112.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ccceeeeEEEEE--E---CCeEEEEEEEecCChhhhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK-------FDTTYQA------TIGIDFLSKTMY--L---EDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~--~---~~~~~~~~i~D~~G~~~~~   72 (207)
                      +|+++|++++|||||+++|++..       +...+.+      ..++......+.  +   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998642       1111111      122233322222  2   5567889999999999999


Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eEE
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---MFI  149 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  149 (207)
                      ..+..++.++|++|+|+|++++.+......|.....    .++|+++|+||+|+.+..  .......++..+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            999999999999999999998766666555543322    258899999999985432  12223344555565   489


Q ss_pred             EEecCCCCChHHHHHHHHHHcC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ++|+++|.|++++|++|.+.+.
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhCC
Confidence            9999999999999999998763

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.1e-24  Score=153.42  Aligned_cols=158  Identities=29%  Similarity=0.438  Sum_probs=126.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|.+|+|||||++++.+..+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+...++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999999988778788888888877777887778999999999989888888888899999999


Q ss_pred             EECCCh-HHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           89 YDVANR-QSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        89 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|.... .++.... .|+..+......+.|+++++||.|+.+.. ........+......+++++|+.+|.|+.+++++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999876 5565544 66666655444378999999999986544 22222233333335689999999999999999987


Q ss_pred             H
Q 028546          167 A  167 (207)
Q Consensus       167 ~  167 (207)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.93  E-value=1.1e-24  Score=148.05  Aligned_cols=161  Identities=22%  Similarity=0.330  Sum_probs=125.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|..+|||||++++|.+.... ...|+.+.  ..++....+  +++++||.+|+..++..|..|+..+|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~-~i~pt~gf--~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTD-TISPTLGF--QIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCcc-ccCCccce--eeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            45799999999999999999999988732 33444443  445555555  79999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSI----EEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      +|+|.+++..++.....++.+... .-...|++|++||.|+..+.....    -....++....++++.||+.+|+++.+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence            999999999998876666665432 235689999999999864322211    112333455678999999999999999


Q ss_pred             HHHHHHHHcCC
Q 028546          162 LFRKIAAALPG  172 (207)
Q Consensus       162 ~~~~l~~~~~~  172 (207)
                      -++||...+.+
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999987754

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=4.2e-25  Score=162.88  Aligned_cols=157  Identities=20%  Similarity=0.230  Sum_probs=115.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hcccccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPS   77 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~   77 (207)
                      ...++|+|+|++|+|||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||...         +...+ .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            34589999999999999999999998754433344444444455555543 3799999999632         22222 2


Q ss_pred             ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546           78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF  157 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (207)
                      .+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.+.....     ......+.+++++|++++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999998888777777776665544568999999999986543321     3334456789999999999


Q ss_pred             ChHHHHHHHHHHc
Q 028546          158 NIKPLFRKIAAAL  170 (207)
Q Consensus       158 ~i~~~~~~l~~~~  170 (207)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.8e-25  Score=153.93  Aligned_cols=162  Identities=20%  Similarity=0.304  Sum_probs=131.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      -..++.+|+++|..+|||||++++|..+++..+ .|+.+..+....  +.+  +.+++||.+|+.+++..|..|+.+.++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~--ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVE--YKN--ISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEE--Ecc--eEEEEEecCCCcccccchhhhccCCcE
Confidence            356789999999999999999999998888666 666666554444  444  799999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEEEEecCCCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFIETSAKAGFN  158 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~  158 (207)
                      +|||+|.++.+.+...++.+..+..... ...|+++++||.|+..+..  ..++.......     ...+-.|+|.+|+|
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999999999998887777766554 6899999999999865433  33343333322     23567889999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 028546          159 IKPLFRKIAAALPGM  173 (207)
Q Consensus       159 i~~~~~~l~~~~~~~  173 (207)
                      +.+.++||.+.+...
T Consensus       166 L~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999987643

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=2.9e-24  Score=154.27  Aligned_cols=153  Identities=22%  Similarity=0.377  Sum_probs=116.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....++|+++|++|+|||||++++.+..+.. ..++.+..+  ..+...+  ..+.+||+||+..+...+..+++++|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            3457999999999999999999999886643 334444332  3344444  5799999999988888888899999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--------eEEEEecCCC
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--------MFIETSAKAG  156 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~  156 (207)
                      ++|+|+++..++.....++..+... ...++|+++++||+|+.+...  .+..   ...+++        +++++||++|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCC
Confidence            9999999988888877777665443 224699999999999854332  2222   222222        4789999999


Q ss_pred             CChHHHHHHHHH
Q 028546          157 FNIKPLFRKIAA  168 (207)
Q Consensus       157 ~~i~~~~~~l~~  168 (207)
                      .|++++|+||.+
T Consensus       161 ~gi~~~~~~l~~  172 (173)
T cd04155         161 EGLQEGMNWVCK  172 (173)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.1e-24  Score=154.88  Aligned_cols=152  Identities=20%  Similarity=0.142  Sum_probs=106.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC---CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD---KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +.|+++|.+++|||||+++|.+.   .+.....++.+.+.....+.+.+ ...+.+|||||++++......++.++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            36899999999999999999964   33333344555555555555542 358999999999988777777788999999


Q ss_pred             EEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHH---hCCeEEEEecCCCCC
Q 028546           87 IVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEEGDGKAKE---FGVMFIETSAKAGFN  158 (207)
Q Consensus        87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~  158 (207)
                      +|+|+++   .++.+.+.    .+... + ..|+++++||+|+.+...  ....+.......   .+.+++++|++++.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   33333222    22211 1 248999999999865421  112233333333   357899999999999


Q ss_pred             hHHHHHHHHH
Q 028546          159 IKPLFRKIAA  168 (207)
Q Consensus       159 i~~~~~~l~~  168 (207)
                      ++++++.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=6.4e-24  Score=158.15  Aligned_cols=166  Identities=42%  Similarity=0.582  Sum_probs=137.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||+++|.++.+...+.++.+..+...........+++.+||++|+++++..+..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            44999999999999999999999999999888888877777777776667899999999999999999999999999999


Q ss_pred             EEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHh---CCeEEEE
Q 028546           88 VYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEF---GVMFIET  151 (207)
Q Consensus        88 v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  151 (207)
                      ++|..+ ..+++....|+..+........|+++++||+|+....            ..............   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            999998 5566667889999888776679999999999997663            22222222222222   3348999


Q ss_pred             ecC--CCCChHHHHHHHHHHcCCC
Q 028546          152 SAK--AGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       152 s~~--~~~~i~~~~~~l~~~~~~~  173 (207)
                      |++  .+.++.++|..+...+...
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHh
Confidence            999  9999999999999988643

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=1.4e-24  Score=151.13  Aligned_cols=148  Identities=20%  Similarity=0.308  Sum_probs=111.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------ccccc--cc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RD   81 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~   81 (207)
                      ++|+++|.|++|||||+|+|++.+......|+.+.+.....+...+  ..+.++|+||...+...      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999998777789999998888888888  57899999995443221      22232  68


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      .|++|+|+|+++.+   .-.....++.+.   .+|+++++||+|..+...+.. +...+.+.++++++++||+++.|+++
T Consensus        79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            99999999998643   222333444433   599999999999877666544 35667788899999999999999999


Q ss_pred             HHHHH
Q 028546          162 LFRKI  166 (207)
Q Consensus       162 ~~~~l  166 (207)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            99875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.5e-24  Score=159.61  Aligned_cols=162  Identities=24%  Similarity=0.278  Sum_probs=110.5

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC-----------hh
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE   69 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~   69 (207)
                      |..+.....++|+++|.+|+|||||+++|.+..+.....++.+.+  ...+...    .+.+|||||           ++
T Consensus         1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~   74 (201)
T PRK04213          1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE   74 (201)
T ss_pred             CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence            445556667999999999999999999999988765555544433  2333222    589999999           45


Q ss_pred             hhccccccccc----cCCEEEEEEECCChHHH-H---------HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028546           70 RFRSLIPSYIR----DSSVAVIVYDVANRQSF-L---------NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE  135 (207)
Q Consensus        70 ~~~~~~~~~~~----~~d~~ilv~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (207)
                      .++..+..++.    .++++++|+|.+....+ +         ....++..+..   .++|+++|+||+|+.+..   .+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~  148 (201)
T PRK04213         75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR---DE  148 (201)
T ss_pred             HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH---HH
Confidence            66666555543    46788999998643211 0         00111222222   268999999999986443   23


Q ss_pred             HHHHHHHHhCC---------eEEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546          136 EGDGKAKEFGV---------MFIETSAKAGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       136 ~~~~~~~~~~~---------~~~~~s~~~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      ....+...+++         +++++||++| |+++++++|.+.+.+...
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            34444555554         5899999999 999999999998865543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=2.5e-23  Score=145.26  Aligned_cols=153  Identities=48%  Similarity=0.790  Sum_probs=121.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECC
Q 028546           14 FLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        14 v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~   92 (207)
                      ++|++|+|||||++++.+... .....++. .+.....+........+.+||+||...+...+..++..+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998887 44444454 6777777777777789999999999888888888899999999999999


Q ss_pred             ChHHHHHHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           93 NRQSFLNTSRWI-EEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE-GDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        93 ~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ++.++..+..|+ ..+.......+|+++++||+|+.......... ..........+++++|+.++.|+++++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888887772 23333344579999999999987654443332 3334445567999999999999999999986

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.4e-23  Score=148.34  Aligned_cols=148  Identities=20%  Similarity=0.251  Sum_probs=112.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------cccccc--cCCEE
Q 028546           14 FLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYIR--DSSVA   85 (207)
Q Consensus        14 v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~~--~~d~~   85 (207)
                      ++|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+...      ...++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999999876555556667776666777765  47999999998766542      344554  89999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|+|+++.....   .++..+...   ++|+++|+||+|+.+...+... ...+...++.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHHc---CCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999999754432   333333332   5899999999999765544333 34566677889999999999999999999


Q ss_pred             HHHHc
Q 028546          166 IAAAL  170 (207)
Q Consensus       166 l~~~~  170 (207)
                      |.+..
T Consensus       152 l~~~~  156 (158)
T cd01879         152 IAELA  156 (158)
T ss_pred             HHHHh
Confidence            98864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=3.5e-24  Score=149.09  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=98.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh-----hhccccccccccCCEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA   85 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~   85 (207)
                      ||+++|++|+|||||+++|.+..+.  +.++.+.       .+.     -.+||+||..     .+..... .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999988652  2222221       111     2689999973     2333333 47899999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  164 (207)
                      |+|||++++.++.. ..|...+      ..|+++|+||+|+.+ .....+....++...+. +++++|+++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999887755 2343322      248999999999864 33445556666777776 799999999999999999


Q ss_pred             HHH
Q 028546          165 KIA  167 (207)
Q Consensus       165 ~l~  167 (207)
                      +|.
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            885

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=1.3e-23  Score=150.07  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=109.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      .|+++|++|+|||||+++|....+.....++.+.+.....+... ...+.+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999988866544444444433334333 13468999999999988888888889999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH-HHHHHHHH------HhCCeEEEEecCCCCChHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI-EEGDGKAK------EFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~i~~~  162 (207)
                      |+++....+. ...+..+..   .++|+++|+||+|+.+...... ........      ...++++++|+++|.|++++
T Consensus        82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            9987432111 111222222   2589999999999864321111 11111111      11357999999999999999


Q ss_pred             HHHHHHHcC
Q 028546          163 FRKIAAALP  171 (207)
Q Consensus       163 ~~~l~~~~~  171 (207)
                      +++|.++..
T Consensus       158 ~~~l~~~~~  166 (168)
T cd01887         158 LEAILLLAE  166 (168)
T ss_pred             HHHHHHhhh
Confidence            999998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.7e-23  Score=160.41  Aligned_cols=162  Identities=19%  Similarity=0.107  Sum_probs=111.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------cccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD   81 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   81 (207)
                      +|+++|.+|+|||||+|+|++..+.. +..+.++.+.........+  .++.+|||||......        ....++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987642 2333344333333322233  4799999999754211        12345789


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIK  160 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  160 (207)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999765553  333333333   25899999999998643221 2223333333444 79999999999999


Q ss_pred             HHHHHHHHHcCCCccCcccc
Q 028546          161 PLFRKIAAALPGMETLSSTK  180 (207)
Q Consensus       161 ~~~~~l~~~~~~~~~~~~~~  180 (207)
                      +++++|.+.+.+.....+..
T Consensus       154 ~L~~~l~~~l~~~~~~~~~~  173 (270)
T TIGR00436       154 FLAAFIEVHLPEGPFRYPED  173 (270)
T ss_pred             HHHHHHHHhCCCCCCCCCCc
Confidence            99999999998776655544

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=1.8e-23  Score=163.39  Aligned_cols=159  Identities=17%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc----c---ccccccccC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----S---LIPSYIRDS   82 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~---~~~~~~~~~   82 (207)
                      ..|+++|.++||||||++++..........+.++.......+.+.+ ...+.+||+||.....    .   .+...+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4689999999999999999998765444445555555566666654 2479999999964221    1   222335679


Q ss_pred             CEEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546           83 SVAVIVYDVANR---QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF  157 (207)
Q Consensus        83 d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (207)
                      +++|+|+|+++.   ..++.+..|...+.....  ...|+++|+||+|+.++.. ..+..+.+.+.++.+++++||+++.
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   577777777777765432  3689999999999865533 2333444555667889999999999


Q ss_pred             ChHHHHHHHHHHc
Q 028546          158 NIKPLFRKIAAAL  170 (207)
Q Consensus       158 ~i~~~~~~l~~~~  170 (207)
                      |+++++++|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998865

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=4e-23  Score=162.56  Aligned_cols=166  Identities=19%  Similarity=0.279  Sum_probs=117.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhh-cccc-------c
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLI-------P   76 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------~   76 (207)
                      ..+.++|+++|.+++|||||+|+|++..+.. ...+.++.+.....+..++  .++.||||||.... ....       .
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            3556799999999999999999999988742 2233334444455555655  47899999997532 2111       1


Q ss_pred             cccccCCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEec
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSA  153 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~  153 (207)
                      ..+.++|+++||+|..+  ++..+. .|+..+...   +.|+++|+||+|+.+.   ............+  ..++++||
T Consensus       127 ~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        127 SSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence            23679999999999874  344443 344444432   4577889999998543   2334444444443  57999999


Q ss_pred             CCCCChHHHHHHHHHHcCCCccCccccc
Q 028546          154 KAGFNIKPLFRKIAAALPGMETLSSTKQ  181 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~  181 (207)
                      ++|.|+++++++|.+.+.+....++...
T Consensus       199 ktg~gv~eL~~~L~~~l~~~~~~~~~~~  226 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKISPWLYAEDD  226 (339)
T ss_pred             cCccCHHHHHHHHHHhCCCCCCCCCCCC
Confidence            9999999999999999998877776554

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.91  E-value=2.7e-23  Score=163.78  Aligned_cols=153  Identities=21%  Similarity=0.218  Sum_probs=115.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh---------hhcccccccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI   79 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~   79 (207)
                      -++|+++|.+++|||||+|+|++..+.....+..+.+.....+.+.+. ..+.+|||+|..         .+...+ ..+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence            389999999999999999999998765555566677777777777543 489999999972         222222 247


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      .++|++++|+|++++.+.+.+..|...+......++|+++|+||+|+.+...+     ... .....+++++|+++|.|+
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCCCCH
Confidence            89999999999999887777766666555544346899999999998643221     111 112346899999999999


Q ss_pred             HHHHHHHHHH
Q 028546          160 KPLFRKIAAA  169 (207)
Q Consensus       160 ~~~~~~l~~~  169 (207)
                      ++++++|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999999765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2.2e-23  Score=152.50  Aligned_cols=147  Identities=17%  Similarity=0.231  Sum_probs=101.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY--DKFDTTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (207)
                      -+|+++|.+++|||||+++|++  +.+....            .++.+.+.......+....+.+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4799999999999999999997  4443321            1223333344444444455789999999999999999


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HhCCe
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGDGKAK-------EFGVM  147 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  147 (207)
                      ..+++++|++++|+|+++.. +.....++..+..   .++|+++|+||+|+.+.... ..++...+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998632 2223333333332   25899999999998643221 1223333332       23678


Q ss_pred             EEEEecCCCCChH
Q 028546          148 FIETSAKAGFNIK  160 (207)
Q Consensus       148 ~~~~s~~~~~~i~  160 (207)
                      ++++|+++|.|+.
T Consensus       159 iv~~Sa~~g~~~~  171 (194)
T cd01891         159 VLYASAKNGWASL  171 (194)
T ss_pred             EEEeehhcccccc
Confidence            9999999997753

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=5.1e-23  Score=138.76  Aligned_cols=173  Identities=25%  Similarity=0.489  Sum_probs=149.6

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      ......+||.++|++..|||||+-.++++.+.+++..+.++.+..+++.+.+..+.+.+||.+|++++..+.+.....+-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            34556799999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-----HHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-----IEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                      +++|+||+++++++..+.+|+.+.+......+ .++|++|.|+.-....+     ...++..++-++...|+||+....|
T Consensus        95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN  173 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN  173 (205)
T ss_pred             EEEEEEecCchHHHHHHHHHHHHHhccCCccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence            99999999999999999999999987665434 46889999964332222     2334666777899999999999999


Q ss_pred             hHHHHHHHHHHcCCCccCc
Q 028546          159 IKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       159 i~~~~~~l~~~~~~~~~~~  177 (207)
                      ++.+|..+...+-......
T Consensus       174 v~KIFK~vlAklFnL~~ti  192 (205)
T KOG1673|consen  174 VQKIFKIVLAKLFNLPWTI  192 (205)
T ss_pred             HHHHHHHHHHHHhCCceec
Confidence            9999999998887665444

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=1e-22  Score=143.68  Aligned_cols=146  Identities=21%  Similarity=0.240  Sum_probs=108.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------cccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   80 (207)
                      ++|+++|++|+|||||++++.+.... ....++.+.+.....+...+  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987652 23344555555555555554  57899999997554322        223567


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      .+|++++|+|++++.+......+..      ....|+++|+||+|+.+....       .......+++++|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            8999999999998766665543332      236899999999998765443       234456789999999999999


Q ss_pred             HHHHHHHHHc
Q 028546          161 PLFRKIAAAL  170 (207)
Q Consensus       161 ~~~~~l~~~~  170 (207)
                      +++++|.+.+
T Consensus       147 ~l~~~l~~~~  156 (157)
T cd04164         147 ELKEALLELA  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=2.6e-23  Score=149.53  Aligned_cols=156  Identities=22%  Similarity=0.183  Sum_probs=109.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh----cccc---ccccccCCEEE
Q 028546           14 FLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLI---PSYIRDSSVAV   86 (207)
Q Consensus        14 v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~i   86 (207)
                      ++|++|+|||||++++.+..+.....+..+.+.....+.+.+ ...+.+||+||....    ...+   ..++.++|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999875322233344444444444551 257899999996321    1222   23467899999


Q ss_pred             EEEECCCh------HHHHHHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546           87 IVYDVANR------QSFLNTSRWIEEVRTERG-------GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus        87 lv~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                      +|+|+.+.      .++..+..|...+.....       ...|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999987      467777777777654432       36899999999998655443332222333345678999999


Q ss_pred             CCCCChHHHHHHHHHHc
Q 028546          154 KAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~  170 (207)
                      +++.|++++++++...+
T Consensus       160 ~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         160 KTEEGLDELIRAIYELL  176 (176)
T ss_pred             hhhcCHHHHHHHHHhhC
Confidence            99999999999997653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.90  E-value=2.5e-23  Score=138.94  Aligned_cols=155  Identities=23%  Similarity=0.362  Sum_probs=126.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++.+.++|...||||||++....+.+.+...|+.+...    ..++.+.+.+.+||.||+++|+++|+.|.+++++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            58899999999999999999999888888788877643    23344557999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--------CeEEEEecCCCCCh
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--------VMFIETSAKAGFNI  159 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~i  159 (207)
                      +|+++++.+......+..+..+.. ..+|++|++||.|+.++..  .   ..+..+++        +-.|.+|+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~--~---~~li~rmgL~sitdREvcC~siScke~~Ni  170 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS--K---IALIERMGLSSITDREVCCFSISCKEKVNI  170 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc--H---HHHHHHhCccccccceEEEEEEEEcCCccH
Confidence            999998888887777777655443 5799999999999865432  2   22333343        23799999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028546          160 KPLFRKIAAALPG  172 (207)
Q Consensus       160 ~~~~~~l~~~~~~  172 (207)
                      +.+.+||+++...
T Consensus       171 d~~~~Wli~hsk~  183 (186)
T KOG0075|consen  171 DITLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=1.1e-22  Score=137.35  Aligned_cols=114  Identities=32%  Similarity=0.568  Sum_probs=89.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFD--TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ||+|+|++|+|||||+++|.+..+.  .......+..+.............+.+||++|++.+...+..++..+|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  22334445555555667777777799999999998888888889999999999


Q ss_pred             EECCChHHHHHHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 028546           89 YDVANRQSFLNTSRW---IEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      ||++++.+++.+..+   +..+.... .++|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999997554   55555433 4599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=8.6e-23  Score=149.13  Aligned_cols=158  Identities=19%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC----CC---CCccccccceeeeEEEEEEC------------CeEEEEEEEecCChhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD----KF---DTTYQATIGIDFLSKTMYLE------------DRTVRLQLWDTAGQER   70 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   70 (207)
                      ++|+++|++++|||||+++|++.    .+   ..+..++.+.+.....+.+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999872    12   22223444445444444433            2356899999999876


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHH------
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAK------  142 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~------  142 (207)
                      +..........+|++++|+|+++.........+.  +....  +.|+++++||+|+......  ..+.......      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444456789999999998743333322221  12222  4799999999998643221  1222222111      


Q ss_pred             -HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          143 -EFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       143 -~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                       ..+++++++|+++|.|+++++++|.+++.
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence             13568999999999999999999998875

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=2e-22  Score=165.42  Aligned_cols=175  Identities=19%  Similarity=0.208  Sum_probs=118.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh--------hccccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   80 (207)
                      .+|+|+|.+++|||||+++|++.... ....++.+.+.......+.+  ..+.+|||||...        +......++.
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999987653 34455666666666666666  4688999999652        3334556788


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCh
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNI  159 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i  159 (207)
                      ++|++|+|+|++++.++.. ..+...+..   .++|+++|+||+|+....   .+.....  ..++ ..+++||++|.|+
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi  187 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGV  187 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCc
Confidence            9999999999998654432 233333332   268999999999985321   1111111  2343 4579999999999


Q ss_pred             HHHHHHHHHHcCCCccCcc-cccccccccccCCCCCC
Q 028546          160 KPLFRKIAAALPGMETLSS-TKQEDMVDVNLKPTVNS  195 (207)
Q Consensus       160 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  195 (207)
                      +++|++|.+.+.+...... ........+-+.++++.
T Consensus       188 ~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGK  224 (472)
T PRK03003        188 GDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGK  224 (472)
T ss_pred             HHHHHHHHhhcccccccccccccceEEEEECCCCCCH
Confidence            9999999999865322110 11122334456666653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.2e-22  Score=166.73  Aligned_cols=167  Identities=25%  Similarity=0.253  Sum_probs=119.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChh----------hhcccc-
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI-   75 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~-   75 (207)
                      ..++|+++|.+++|||||+++|++.... ....++++.+.....+..++.  .+.+|||||..          .+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            3589999999999999999999988753 445566777776677777764  56899999953          222221 


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH-HHHHhCCeEEEEe
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDG-KAKEFGVMFIETS  152 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-~~~~~~~~~~~~s  152 (207)
                      ..+++++|++|+|+|++++.++..+. ++..+..   .++|+++|+||+|+.+.....  ..+... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23578999999999999877776653 3444433   368999999999996432110  111111 1111246899999


Q ss_pred             cCCCCChHHHHHHHHHHcCCCccCcccc
Q 028546          153 AKAGFNIKPLFRKIAAALPGMETLSSTK  180 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~  180 (207)
                      |++|.|++++|+.+.+.+.....+.++.
T Consensus       364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~  391 (472)
T PRK03003        364 AKTGRAVDKLVPALETALESWDTRIPTG  391 (472)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence            9999999999999999987666555443

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=3.7e-22  Score=161.60  Aligned_cols=152  Identities=20%  Similarity=0.224  Sum_probs=116.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------cccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (207)
                      ..++|+++|++|+|||||+|+|++... .....++++.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            348999999999999999999998754 234456777787777787876  46799999997654432        2356


Q ss_pred             cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                      ++++|++++|+|++++.+++..  |+..+..   .++|+++|+||+|+.+.   .   ...+...++.+++++|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~---~---~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN---S---LEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc---c---hhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999987776654  6555532   25899999999998543   1   1334556678899999998 59


Q ss_pred             hHHHHHHHHHHcCCC
Q 028546          159 IKPLFRKIAAALPGM  173 (207)
Q Consensus       159 i~~~~~~l~~~~~~~  173 (207)
                      ++++|+.|.+.+.+.
T Consensus       348 I~~~~~~L~~~i~~~  362 (442)
T TIGR00450       348 IKALVDLLTQKINAF  362 (442)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2e-22  Score=163.88  Aligned_cols=148  Identities=26%  Similarity=0.289  Sum_probs=114.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------ccccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYI   79 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~   79 (207)
                      .++|+++|.+++|||||+|+|++... .....++++.+.....+.+++  ..+.+|||||...+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            48999999999999999999998765 344566677777777777776  57899999997654332        22357


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      .++|++++|+|++++.+++....|..      ..+.|+++|+||+|+.+.....        ...+.+++++|+++|.|+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI  358 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI  358 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence            89999999999998777665443332      3368999999999986543321        334568999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 028546          160 KPLFRKIAAALPG  172 (207)
Q Consensus       160 ~~~~~~l~~~~~~  172 (207)
                      ++++++|.+.+..
T Consensus       359 ~~L~~~L~~~l~~  371 (449)
T PRK05291        359 DELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998864

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=6.9e-22  Score=131.09  Aligned_cols=159  Identities=23%  Similarity=0.355  Sum_probs=123.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+.+|..++||||++..|.-+... ...++.+..+  .++.+.+  +.+.+||.+|+++.+..|..|+.+..++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            56899999999999999999999877654 3355665544  4444444  79999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHH-HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEE-VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~-i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~  160 (207)
                      ||+|..+...++..+..+.. +......+.|++|.+||.|+.++..  .+++.......     ..-+.++++.+|+|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999988888877555444 4444456899999999999976544  44444333221     2346799999999999


Q ss_pred             HHHHHHHHHcCC
Q 028546          161 PLFRKIAAALPG  172 (207)
Q Consensus       161 ~~~~~l~~~~~~  172 (207)
                      +-|.||...+.+
T Consensus       168 eglswlsnn~~~  179 (180)
T KOG0071|consen  168 EGLSWLSNNLKE  179 (180)
T ss_pred             HHHHHHHhhccC
Confidence            999999987653

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=8.7e-22  Score=156.94  Aligned_cols=166  Identities=17%  Similarity=0.135  Sum_probs=121.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-------cccccccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   83 (207)
                      .|+++|.|+||||||+|+|.+.+......+.+|.......+...+. ..+.|+|+||...-.       ......+..+|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            7999999999999999999988765555666776666666666542 369999999965321       11223578899


Q ss_pred             EEEEEEECC---ChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCC
Q 028546           84 VAVIVYDVA---NRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAG  156 (207)
Q Consensus        84 ~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  156 (207)
                      ++++|+|++   ....++.+..|+..+.....  ...|+++|+||+|+....++ .+....+....+  .+++++||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999998   44566666777777665432  35899999999998654332 233333444434  47899999999


Q ss_pred             CChHHHHHHHHHHcCCCccCcc
Q 028546          157 FNIKPLFRKIAAALPGMETLSS  178 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~~~~~  178 (207)
                      .|+++++++|.+.+.+....++
T Consensus       319 ~GIdeLl~~I~~~L~~~~~~~~  340 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPREEA  340 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcccCC
Confidence            9999999999999987655443

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.2e-21  Score=157.05  Aligned_cols=160  Identities=18%  Similarity=0.137  Sum_probs=117.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh----ccccc---cccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIP---SYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~---~~~~~~d   83 (207)
                      .|+++|.|+|||||||+++.+.+......+.++.......+.+.+ ...+.+||+||...-    ..+..   ..+..++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            799999999999999999998775434445555555555555542 247999999996421    11222   2356699


Q ss_pred             EEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           84 VAVIVYDVANR---QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        84 ~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                      ++|+|+|+++.   +.++....|...+.....  ..+|++||+||+|+.+.    .+....+...++.+++++||+++.|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999854   566777777777765432  36899999999998432    2334455555667899999999999


Q ss_pred             hHHHHHHHHHHcCCCcc
Q 028546          159 IKPLFRKIAAALPGMET  175 (207)
Q Consensus       159 i~~~~~~l~~~~~~~~~  175 (207)
                      +++++++|.+.+.+.+.
T Consensus       315 I~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        315 LDELLYAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            99999999998876543

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=6e-22  Score=148.23  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=120.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc--------c
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------P   76 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~   76 (207)
                      .++.--++++|.|++|||||+|++++.+.. .++.+.++..........++  .++.|+||||.+......        .
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            355677999999999999999999999986 34445555555555544443  689999999976544332        2


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCC
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKA  155 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (207)
                      ..+..+|+++||+|+++...-. ....++.+..   .+.|+++++||+|...+................ ..++++||+.
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPG-DEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HHhccCcEEEEEEeccccCCcc-HHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence            3367899999999999633221 1222333333   257999999999987665532333333333333 3899999999


Q ss_pred             CCChHHHHHHHHHHcCCCccCccccc
Q 028546          156 GFNIKPLFRKIAAALPGMETLSSTKQ  181 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~~~~~~~~~~  181 (207)
                      |.|++.+.+.+...+.+....++...
T Consensus       157 g~n~~~L~~~i~~~Lpeg~~~yp~d~  182 (298)
T COG1159         157 GDNVDTLLEIIKEYLPEGPWYYPEDQ  182 (298)
T ss_pred             cCCHHHHHHHHHHhCCCCCCcCChhh
Confidence            99999999999999999887776543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.89  E-value=4.2e-22  Score=144.78  Aligned_cols=155  Identities=24%  Similarity=0.274  Sum_probs=110.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccc----------------cccceeeeEEEEEECCeEEEEEEEecCChhhhccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQ----------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   74 (207)
                      +|+++|.+|+|||||++++.+........                .+.+...........  ...+.+||+||..++...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            58999999999999999999876654331                122223223333333  358999999999988888


Q ss_pred             cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH---------
Q 028546           75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKE---------  143 (207)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~---------  143 (207)
                      +..++..+|++++|+|++++..... ..++..+..   .+.|+++++||+|+..+.+..  ..........         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8888999999999999987554332 233333333   368999999999986532211  2222222222         


Q ss_pred             -----hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          144 -----FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       144 -----~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                           ...+++++|+++|.|+++++++|.+.+.
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                 3568999999999999999999999864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=4.5e-22  Score=140.76  Aligned_cols=146  Identities=18%  Similarity=0.232  Sum_probs=101.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh----hhccccccccccCCEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV   86 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i   86 (207)
                      +|+++|.+++|||||++++.+... .. ..+.       .+.+...    .+|||||..    ++.......+.++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-LA-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-cC-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999876532 11 1111       1122221    269999962    22222223468999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--eEEEEecCCCCChHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--MFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~  164 (207)
                      +|+|+++..++.  ..|+..+    ....|+++++||+|+.+   ...+....++...++  +++++|+++|.|++++|+
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            999999876542  2343333    12578999999999854   234555666666664  899999999999999999


Q ss_pred             HHHHHcCCCccCcc
Q 028546          165 KIAAALPGMETLSS  178 (207)
Q Consensus       165 ~l~~~~~~~~~~~~  178 (207)
                      +|.+.+.+.....+
T Consensus       141 ~l~~~~~~~~~~~~  154 (158)
T PRK15467        141 YLASLTKQEEAGEK  154 (158)
T ss_pred             HHHHhchhhhcccc
Confidence            99999876655443

>cd01894 EngA1 EngA1 subfamily

Probab=99.89  E-value=4.6e-22  Score=140.34  Aligned_cols=147  Identities=20%  Similarity=0.201  Sum_probs=102.0

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------ccccccccCC
Q 028546           13 VFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS   83 (207)
Q Consensus        13 ~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   83 (207)
                      +++|.+|+|||||++++.+.... ....+..+.+........++  ..+.+|||||...+..        .+...+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999987532 12233334444444455555  5799999999776443        3345678899


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHH
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPL  162 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  162 (207)
                      ++++|+|..++.+.... .....+...   ..|+++|+||+|+.+....     .......++ +++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999865433322 222223222   4899999999998654322     223334565 7899999999999999


Q ss_pred             HHHHHHHc
Q 028546          163 FRKIAAAL  170 (207)
Q Consensus       163 ~~~l~~~~  170 (207)
                      +++|.+.+
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99998764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=8e-22  Score=164.82  Aligned_cols=157  Identities=20%  Similarity=0.249  Sum_probs=115.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC-------CCCccc------cccceeeeEEE--EEE---CCeEEEEEEEecCChhhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK-------FDTTYQ------ATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~   71 (207)
                      -+|+++|+.++|||||+++|+...       +...+.      +..++++....  +.+   ++..+.+.+|||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999998642       111111      12234443333  333   456689999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eE
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---MF  148 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  148 (207)
                      ...+..++..+|++|+|+|++++.+.+....|...+.    .++|+++|+||+|+.+...  ......+...+++   .+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~~~v  157 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDASEA  157 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCcceE
Confidence            9999999999999999999998766666655554432    2579999999999854321  1222344444555   48


Q ss_pred             EEEecCCCCChHHHHHHHHHHcCC
Q 028546          149 IETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      +++||++|.|++++|++|.+.+..
T Consensus       158 i~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999998864

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=6.2e-22  Score=159.43  Aligned_cols=157  Identities=22%  Similarity=0.221  Sum_probs=114.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh--cccc------cccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD   81 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~   81 (207)
                      .+|+++|.+++|||||+|+|++..+.....++.+.+.....+.+.+.. .+.+|||+|..+.  ...+      ...+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            589999999999999999999887655556667777777777666532 6889999997331  1112      233688


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCChH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIK  160 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~  160 (207)
                      +|++|+|+|++++.+++.+..|...+......++|+++|+||+|+.+....   ...  ....+.+ ++++|+++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HHH--HHhcCCCceEEEeCCCCCCHH
Confidence            999999999999877777655555444443346899999999998643211   111  1123444 5899999999999


Q ss_pred             HHHHHHHHHcCC
Q 028546          161 PLFRKIAAALPG  172 (207)
Q Consensus       161 ~~~~~l~~~~~~  172 (207)
                      +++++|.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998753

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=7.2e-22  Score=160.19  Aligned_cols=164  Identities=19%  Similarity=0.093  Sum_probs=116.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccccC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS   82 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   82 (207)
                      .+|+++|.|+||||||+++|.+.+......+.++.......+.+.+  ..+.+||+||....       .......+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5799999999999999999998766544456666666666666666  57999999995321       11123346789


Q ss_pred             CEEEEEEECCCh----HHHHHHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q 028546           83 SVAVIVYDVANR----QSFLNTSRWIEEVRTER-----------GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM  147 (207)
Q Consensus        83 d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (207)
                      |++|+|+|+++.    +.+..+..+...+....           ....|++||+||+|+.+..+. .+.........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence            999999999752    23444444443443221           135899999999998654432 22223333445789


Q ss_pred             EEEEecCCCCChHHHHHHHHHHcCCCccC
Q 028546          148 FIETSAKAGFNIKPLFRKIAAALPGMETL  176 (207)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~~~~~~~~  176 (207)
                      ++++|+.++.|+++++.+|.+.+...+..
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~  345 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEARAA  345 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999998776543

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=9.1e-22  Score=144.81  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=103.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEEEEC---------------------------C----
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYLE---------------------------D----   55 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   55 (207)
                      ++|+++|+.|+|||||+.++.+...   ..+.....++......+...                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   12222222222211111110                           1    


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S  133 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~  133 (207)
                      ....+.||||||++++...+...+..+|++++|+|++++.........+..+... . ..|+++|+||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~-~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G-LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C-CCcEEEEEEchhccCHHHHHHH
Confidence            1157999999999988888877888999999999998631111111222222222 1 2579999999998643221  1


Q ss_pred             HHHHHHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          134 IEEGDGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       134 ~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      .+.+..+...+   +++++++|+++|.|+++++++|.+.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            12233333322   5689999999999999999999987764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2.1e-21  Score=142.21  Aligned_cols=163  Identities=24%  Similarity=0.238  Sum_probs=105.4

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCCh----------hhhc
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFR   72 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~   72 (207)
                      .......++|+++|++|+|||||++++++..+.....++.+.+........   ..++.+|||||.          ..+.
T Consensus        18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            344456699999999999999999999987644333333332222222222   258999999994          3344


Q ss_pred             ccccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHhCCe
Q 028546           73 SLIPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEFGVM  147 (207)
Q Consensus        73 ~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~  147 (207)
                      .....++..   .+++++++|.+.+.+.... .....+. .  .+.|+++++||+|+.+..+..  .+.+.........+
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (196)
T PRK00454         95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE  170 (196)
T ss_pred             HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence            444445554   4678889998764332221 1112222 2  258899999999986543321  12233333333678


Q ss_pred             EEEEecCCCCChHHHHHHHHHHcCC
Q 028546          148 FIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ++++|++++.|+++++++|.+.+.+
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999988764

>cd01895 EngA2 EngA2 subfamily

Probab=99.88  E-value=4.4e-21  Score=137.34  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=104.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-----------ccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP   76 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   76 (207)
                      .++|+++|++|+|||||++++++.... ....+..+.......+..++  ..+.+||+||..+...           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            589999999999999999999987643 22233444444344444554  3588999999643311           112


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-HHHh----CCeEEEE
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGK-AKEF----GVMFIET  151 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~----~~~~~~~  151 (207)
                      ..+.++|++++|+|++++.+.... .++..+..   .+.|+++++||+|+.+..+...+..... ...+    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            345789999999999987665443 22232222   2589999999999876542222222222 2222    3689999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q 028546          152 SAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999999875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=2.7e-21  Score=149.98  Aligned_cols=168  Identities=18%  Similarity=0.227  Sum_probs=111.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhc--------ccccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPS   77 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~   77 (207)
                      .+.-.|+++|++|||||||+|+|++..+.... .+.++.+........++  .++.++||||.....        .....
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~   80 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWS   80 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence            34567999999999999999999998774322 23333332222222222  689999999965432        22234


Q ss_pred             ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCC
Q 028546           78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAG  156 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~  156 (207)
                      .+..+|++++|+|+++..+ ......+..+.   ..+.|+++|+||+|+....+........+....+ .+++++|++++
T Consensus        81 ~~~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~  156 (292)
T PRK00089         81 SLKDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG  156 (292)
T ss_pred             HHhcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence            5678999999999987221 11122222232   2258999999999996432222333344444334 58999999999


Q ss_pred             CChHHHHHHHHHHcCCCccCcccc
Q 028546          157 FNIKPLFRKIAAALPGMETLSSTK  180 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~~~~~~~  180 (207)
                      .|+++++++|.+.+.+.....+..
T Consensus       157 ~gv~~L~~~L~~~l~~~~~~y~~~  180 (292)
T PRK00089        157 DNVDELLDVIAKYLPEGPPYYPED  180 (292)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCC
Confidence            999999999999998766555443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=1.9e-21  Score=158.48  Aligned_cols=165  Identities=20%  Similarity=0.209  Sum_probs=115.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc-----------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----------   75 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   75 (207)
                      ..++++++|.+++|||||+++|++.... ....++++.+.....+..++.  .+.+|||||..+.....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999987642 333455555555555555553  78999999975543321           


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-Hh----CCeEEE
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EF----GVMFIE  150 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~  150 (207)
                      ..+++.+|++|+|+|++++.+..... ++..+..   .+.|+++|+||+|+.+.. ...+....... .+    ++++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence            23578999999999999876655543 3333332   258999999999986221 11222222222 21    468999


Q ss_pred             EecCCCCChHHHHHHHHHHcCCCccCccc
Q 028546          151 TSAKAGFNIKPLFRKIAAALPGMETLSST  179 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~~  179 (207)
                      +||++|.|++++|+++.+.+.......++
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYENANRRIST  352 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence            99999999999999999988766554443

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.88  E-value=2.2e-21  Score=162.03  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=119.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc---CCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY---DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +.|+++|++++|||||+++|.+   +.++.++.++.+++.....+..++  ..+.+||+||+++|.......+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            4689999999999999999996   344555667777777776777766  68999999999999888888889999999


Q ss_pred             EEEECCC---hHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHh----CCeEEEEecCCC
Q 028546           87 IVYDVAN---RQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS--IEEGDGKAKEF----GVMFIETSAKAG  156 (207)
Q Consensus        87 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~----~~~~~~~s~~~~  156 (207)
                      +|+|+++   +++.+.+.    .+. ..  ++| +++|+||+|+.++....  .+++..+...+    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~-~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLD-LL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHH-Hc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999997   44444332    222 22  466 99999999997544321  22344444443    468999999999


Q ss_pred             CChHHHHHHHHHHcCCCcc
Q 028546          157 FNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~~  175 (207)
                      .|+++++++|.+.+.....
T Consensus       152 ~GI~eL~~~L~~l~~~~~~  170 (581)
T TIGR00475       152 QGIGELKKELKNLLESLDI  170 (581)
T ss_pred             CCchhHHHHHHHHHHhCCC
Confidence            9999999999888776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-20  Score=126.96  Aligned_cols=168  Identities=27%  Similarity=0.347  Sum_probs=136.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC--CccccccceeeeEEEEEEC-CeEEEEEEEecCChhhh-ccccccccccCCE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFD--TTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF-RSLIPSYIRDSSV   84 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~   84 (207)
                      -.|++|+|..++|||+++.+++.+...  .+..++.. +++...+..+ +..-.+.++||.|.... ..+-..|+.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            479999999999999999999866553  22334443 5555555443 33337999999997766 5566788999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +++||+..++++|+.+..+-..|.+... +.+|++|++||.|+.+++++..+.+..++....++.+++++.+...+-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            9999999999999997666666655443 579999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccCc
Q 028546          164 RKIAAALPGMETLS  177 (207)
Q Consensus       164 ~~l~~~~~~~~~~~  177 (207)
                      .+|...+.....++
T Consensus       168 ~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  168 TYLASRLHQPQSKS  181 (198)
T ss_pred             HHHHHhccCCcccc
Confidence            99999886554433

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=4.2e-21  Score=156.64  Aligned_cols=149  Identities=21%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh--------hccccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   80 (207)
                      ++|+++|.+|+|||||+++|.+.... ....++.+.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987752 23345555666666666766  6899999999876        2333455678


Q ss_pred             cCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546           81 DSSVAVIVYDVANRQSFL--NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGF  157 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (207)
                      ++|++|+|+|+.++.+..  .+..|+..   .   +.|+++|+||+|+.+. +   .... ....+++ .++++|+.+|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~---~---~~piilv~NK~D~~~~-~---~~~~-~~~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK---S---NKPVILVVNKVDGPDE-E---ADAY-EFYSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCcEEEEEECccCccc-h---hhHH-HHHhcCCCCCEEEEeeCCC
Confidence            999999999998743322  23333332   2   5899999999996431 1   1111 2234565 48999999999


Q ss_pred             ChHHHHHHHHHHcC
Q 028546          158 NIKPLFRKIAAALP  171 (207)
Q Consensus       158 ~i~~~~~~l~~~~~  171 (207)
                      |++++++++.+...
T Consensus       149 gv~~l~~~I~~~~~  162 (435)
T PRK00093        149 GIGDLLDAILEELP  162 (435)
T ss_pred             CHHHHHHHHHhhCC
Confidence            99999999998543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.87  E-value=6.1e-21  Score=158.88  Aligned_cols=154  Identities=21%  Similarity=0.243  Sum_probs=112.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ...+|+++|+.++|||||+++|.+..+.....++.+.++....+.+.+.. .+.||||||++.|..++...+..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            45899999999999999999999988876655555555555555554432 79999999999999998888999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------hC--CeEEEEecCCCCC
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-------FG--VMFIETSAKAGFN  158 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~  158 (207)
                      |+|+++...-+.. +.+....   ..++|+++++||+|+.+.   ..+........       ++  .+++++||++|.|
T Consensus       165 VVda~dgv~~qT~-e~i~~~~---~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       165 VVAADDGVMPQTI-EAISHAK---AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEECCCCCCHhHH-HHHHHHH---HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999863222222 1122222   236899999999998542   22333333322       22  4799999999999


Q ss_pred             hHHHHHHHHHH
Q 028546          159 IKPLFRKIAAA  169 (207)
Q Consensus       159 i~~~~~~l~~~  169 (207)
                      +++++++|...
T Consensus       238 I~eLl~~I~~~  248 (587)
T TIGR00487       238 IDELLDMILLQ  248 (587)
T ss_pred             hHHHHHhhhhh
Confidence            99999999753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.87  E-value=1.6e-21  Score=141.98  Aligned_cols=159  Identities=25%  Similarity=0.318  Sum_probs=107.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC------------------CccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFD------------------TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      -++|+++|+.++|||||+.+|++..-.                  .+.....+++.....+........++++||||+.+
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            478999999999999999999844321                  11123334444444444113336899999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHH-HHHHHh----
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGD-GKAKEF----  144 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~~~~~----  144 (207)
                      |.......+..+|++|+|+|+.++-... ..+.+..+...   ++|+++|+||+|+.+.+-. ..++.. .+.+..    
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             eeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            9888888899999999999998653322 23333334333   5889999999998621110 011111 222222    


Q ss_pred             --CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          145 --GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       145 --~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                        .++++++|+.+|.|++++++.|.+.++
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              257999999999999999999999876

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04163 Era Era subfamily

Probab=99.87  E-value=7.9e-21  Score=135.02  Aligned_cols=156  Identities=18%  Similarity=0.199  Sum_probs=103.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------cccccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI   79 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~   79 (207)
                      ..+|+++|++|+|||||++++.+..+..... +..+.......+  ......+.+||+||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            5789999999999999999999876532222 222222112222  22236899999999643222        233457


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCC
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFN  158 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  158 (207)
                      ..+|++++|+|++++.+ .....++..+...   ..|+++|+||+|+....+...+......... ..+++++|++++.+
T Consensus        81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             HhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            88999999999997611 1122223333322   4789999999998643332233334444444 36899999999999


Q ss_pred             hHHHHHHHHHHc
Q 028546          159 IKPLFRKIAAAL  170 (207)
Q Consensus       159 i~~~~~~l~~~~  170 (207)
                      +++++++|.+.+
T Consensus       157 ~~~l~~~l~~~~  168 (168)
T cd04163         157 VDELLEEIVKYL  168 (168)
T ss_pred             hHHHHHHHHhhC
Confidence            999999998753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=7.5e-21  Score=154.98  Aligned_cols=152  Identities=21%  Similarity=0.221  Sum_probs=110.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh--------hhhcccccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD   81 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   81 (207)
                      +|+++|.+|+|||||+|+|++.... ....++.+.+.......+++  ..+.+|||||.        ..+......++..
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 23345556666666666666  46999999995        3344556667899


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIK  160 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  160 (207)
                      +|++++|+|+.++.+... ..+...++..   ++|+++|+||+|+.+.....     .....+++ +++++|+.+|.|+.
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~~-----~~~~~lg~~~~~~vSa~~g~gv~  149 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAVA-----AEFYSLGFGEPIPISAEHGRGIG  149 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCcccccH-----HHHHhcCCCCeEEEeCCcCCChH
Confidence            999999999986433322 1222223322   58999999999986543321     22345566 79999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      ++++++.+.+.+.
T Consensus       150 ~ll~~i~~~l~~~  162 (429)
T TIGR03594       150 DLLDAILELLPEE  162 (429)
T ss_pred             HHHHHHHHhcCcc
Confidence            9999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.87  E-value=1.1e-20  Score=158.05  Aligned_cols=158  Identities=19%  Similarity=0.223  Sum_probs=112.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC--CC-------------CccccccceeeeEEEEEE---CCeEEEEEEEecCChhhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK--FD-------------TTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~   71 (207)
                      .+|+++|+.++|||||+.+|+...  +.             .+..+..++......+.+   ++..+.+++|||||+.+|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            689999999999999999998521  11             111222232222222222   455689999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eE
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---MF  148 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  148 (207)
                      ...+..++..+|++|+|+|++++...+....|.....    .++|+++|+||+|+.+...  ......+...+++   .+
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~v  161 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASDA  161 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcceE
Confidence            9999999999999999999998655555544544322    2588999999999854321  1122334444555   38


Q ss_pred             EEEecCCCCChHHHHHHHHHHcCCC
Q 028546          149 IETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      +++||++|.|+++++++|.+.+..-
T Consensus       162 i~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        162 VLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             EEEecCCCCCHHHHHHHHHHhCccc
Confidence            9999999999999999999988643

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=6.6e-21  Score=150.08  Aligned_cols=177  Identities=20%  Similarity=0.209  Sum_probs=126.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------cccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI   79 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~   79 (207)
                      ..|+++|.|++|||||+|+|++.+.. ....++.+.|.......+.+.  .|.++||+|.+..         .......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            67999999999999999999998874 566788888888888888885  5999999996532         22345567


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFN  158 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (207)
                      ..||++|||+|...+-+-.+  +.+..+...  .++|+++|+||+|-..     .+......-.+|+ +++++||..|.|
T Consensus        82 ~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence            89999999999986332222  222222222  2589999999999641     2222333334565 799999999999


Q ss_pred             hHHHHHHHHHHcC-CCccCccc-ccccccccccCCCCCCcc
Q 028546          159 IKPLFRKIAAALP-GMETLSST-KQEDMVDVNLKPTVNSSQ  197 (207)
Q Consensus       159 i~~~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~  197 (207)
                      +.++++++++.++ ..+..... ...-..++-++|+++.|+
T Consensus       153 i~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSs  193 (444)
T COG1160         153 IGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSS  193 (444)
T ss_pred             HHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchH
Confidence            9999999999985 21111111 133456678889888653

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.86  E-value=3e-20  Score=158.90  Aligned_cols=156  Identities=15%  Similarity=0.192  Sum_probs=117.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc----------c
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------P   76 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------~   76 (207)
                      +++++|+++|++++|||||+|++.+......+.++.+.+.....+..+  ..++.+||+||..++....          .
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~--~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC--ceEEEEEECCCccccccccccccHHHHHHH
Confidence            356899999999999999999999887655555666666555555444  3689999999987654321          1


Q ss_pred             cc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546           77 SY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK  154 (207)
Q Consensus        77 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (207)
                      .+  ...+|++++|+|+++.+..   ..+..++.+.   ++|+++++||+|+.+.+... ...+.+.+.++++++++|+.
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~  151 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVST  151 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEee
Confidence            22  2479999999999975432   2233444333   58999999999986555543 45667778889999999999


Q ss_pred             CCCChHHHHHHHHHHcC
Q 028546          155 AGFNIKPLFRKIAAALP  171 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~~  171 (207)
                      +|.|++++.+.+.+...
T Consensus       152 ~g~GIdeL~~~I~~~~~  168 (772)
T PRK09554        152 RGRGIEALKLAIDRHQA  168 (772)
T ss_pred             cCCCHHHHHHHHHHhhh
Confidence            99999999999988753

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.86  E-value=2.6e-20  Score=136.94  Aligned_cols=118  Identities=19%  Similarity=0.361  Sum_probs=88.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC-CEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVIVY   89 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~ilv~   89 (207)
                      +|+++|++|||||||+++|....+..+..+. ............+....+.+||+||+.+++..+..+++++ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999998876554332 2222221221113346899999999999999888899998 9999999


Q ss_pred             ECCCh-HHHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCC
Q 028546           90 DVANR-QSFLNTSRWIEEVRTE---RGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        90 d~~~~-~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~D~~~~  129 (207)
                      |+++. .++..+..++..+...   ....+|+++++||+|+..+
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            99986 6677766665554322   2247999999999998644

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.86  E-value=1.9e-20  Score=158.26  Aligned_cols=156  Identities=19%  Similarity=0.260  Sum_probs=111.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEE--EEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....|+|+|+.++|||||+++|....+.....++.+.++...  .+..++....+.||||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            457999999999999999999998877655444444333222  233334457899999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-------HHhC--CeEEEEecCCC
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-------KEFG--VMFIETSAKAG  156 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~s~~~~  156 (207)
                      |+|+|++++...+.... +..+.   ..++|++|++||+|+.+..   .+......       ..++  ++++++||++|
T Consensus       323 ILVVDA~dGv~~QT~E~-I~~~k---~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG  395 (742)
T CHL00189        323 ILIIAADDGVKPQTIEA-INYIQ---AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG  395 (742)
T ss_pred             EEEEECcCCCChhhHHH-HHHHH---hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence            99999987422222211 12222   2368999999999986432   22222221       2233  68999999999


Q ss_pred             CChHHHHHHHHHHc
Q 028546          157 FNIKPLFRKIAAAL  170 (207)
Q Consensus       157 ~~i~~~~~~l~~~~  170 (207)
                      .|+++++++|....
T Consensus       396 ~GIdeLle~I~~l~  409 (742)
T CHL00189        396 TNIDKLLETILLLA  409 (742)
T ss_pred             CCHHHHHHhhhhhh
Confidence            99999999998764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.86  E-value=2.3e-20  Score=159.01  Aligned_cols=154  Identities=19%  Similarity=0.233  Sum_probs=112.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .....|+|+|+.++|||||+++|....+.....++.+.+.....+.+++  ..++||||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4458899999999999999999998887655555555555445555555  57999999999999999988899999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-------HHHHhC--CeEEEEecCCCC
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDG-------KAKEFG--VMFIETSAKAGF  157 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~  157 (207)
                      ||+|++++..-+.... +..+.   ..++|++|++||+|+.+..   .+....       +...++  ++++++|+++|.
T Consensus       366 LVVdAddGv~~qT~e~-i~~a~---~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~  438 (787)
T PRK05306        366 LVVAADDGVMPQTIEA-INHAK---AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGE  438 (787)
T ss_pred             EEEECCCCCCHhHHHH-HHHHH---hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCC
Confidence            9999987322121111 12222   2368999999999985432   122211       122233  689999999999


Q ss_pred             ChHHHHHHHHHH
Q 028546          158 NIKPLFRKIAAA  169 (207)
Q Consensus       158 ~i~~~~~~l~~~  169 (207)
                      |+++++++|...
T Consensus       439 GI~eLle~I~~~  450 (787)
T PRK05306        439 GIDELLEAILLQ  450 (787)
T ss_pred             CchHHHHhhhhh
Confidence            999999999864

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.4e-21  Score=133.12  Aligned_cols=164  Identities=24%  Similarity=0.307  Sum_probs=123.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC---CC--CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK---FD--TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      ....+.++++|+.++|||||+.++....   +-  ....-+.+......++.+.+  ..+.+||.+|++..+++|..|+.
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence            3456899999999999999998875321   10  01112233333444555553  58999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH---HHH---hCCeEEEEec
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGK---AKE---FGVMFIETSA  153 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~~---~~~~~~~~s~  153 (207)
                      .+|++|+++|+++++.|+.....++.+... .-..+|+++.+||.|+.+..+  ..++...   +..   ..+++.++|+
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvSa  169 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVSA  169 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccchh
Confidence            999999999999999999987777665443 336899999999999854432  3333222   222   2468999999


Q ss_pred             CCCCChHHHHHHHHHHcCCC
Q 028546          154 KAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~~  173 (207)
                      .+|+||++-..|+...+...
T Consensus       170 l~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  170 LTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcccHHHHHHHHHHHHhhc
Confidence            99999999999999998765

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=1.6e-20  Score=135.65  Aligned_cols=149  Identities=21%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh----------hhccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSL   74 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~   74 (207)
                      .....++|+++|++|+|||||++++.+..+.....++.+.+.....+..++   .+.+||+||..          .+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            345668999999999999999999998864322223332222222233332   68999999942          23333


Q ss_pred             cccccc---cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHhC--Ce
Q 028546           75 IPSYIR---DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEFG--VM  147 (207)
Q Consensus        75 ~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~  147 (207)
                      ...+++   .++++++|+|++++-+.... .++..+..   .++|+++++||+|+.++.+.  ..+.++......+  .+
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            444554   35899999999874433333 22233322   25899999999998644221  2333344444433  47


Q ss_pred             EEEEecCCCCChH
Q 028546          148 FIETSAKAGFNIK  160 (207)
Q Consensus       148 ~~~~s~~~~~~i~  160 (207)
                      ++++|+++|+|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd00880 Era_like Era (E

Probab=99.85  E-value=2e-20  Score=131.74  Aligned_cols=152  Identities=20%  Similarity=0.177  Sum_probs=104.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------cccccccCCEE
Q 028546           14 FLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSSVA   85 (207)
Q Consensus        14 v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~   85 (207)
                      ++|++|+|||||++++.+.... ....+..+............ ...+.+||+||.......       ...++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987654 33334444444444443332 358999999997665433       33467899999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH---HHHHHHHhCCeEEEEecCCCCChHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE---GDGKAKEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      ++|+|+++........ +......   ...|+++|+||+|+..........   ........+.+++++|+.++.|++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999866555543 2333322   368999999999987554332211   11222234578999999999999999


Q ss_pred             HHHHHHHc
Q 028546          163 FRKIAAAL  170 (207)
Q Consensus       163 ~~~l~~~~  170 (207)
                      +++|.+.+
T Consensus       156 ~~~l~~~~  163 (163)
T cd00880         156 REALIEAL  163 (163)
T ss_pred             HHHHHhhC
Confidence            99998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=2.2e-20  Score=156.26  Aligned_cols=146  Identities=17%  Similarity=0.245  Sum_probs=112.1

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------ccccc--ccCCEEEE
Q 028546           16 GDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVI   87 (207)
Q Consensus        16 G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~il   87 (207)
                      |.+++|||||+|++.+..+...+.++.+.+.....+..++  .++.+||+||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999887666677777777777777766  46899999998776543      23333  37899999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |+|+++.+.   ...+..++.+   .++|+++++||+|+.+..... .+.+.+.+..+++++++|+++|.|++++++++.
T Consensus        79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            999987432   2233333332   268999999999986655554 345677778899999999999999999999998


Q ss_pred             HHc
Q 028546          168 AAL  170 (207)
Q Consensus       168 ~~~  170 (207)
                      +..
T Consensus       152 ~~~  154 (591)
T TIGR00437       152 KAI  154 (591)
T ss_pred             HHh
Confidence            764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=6.1e-20  Score=157.25  Aligned_cols=155  Identities=19%  Similarity=0.174  Sum_probs=107.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh--------hccccccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY   78 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~   78 (207)
                      ...+|+++|.+++|||||+|+|++.... ....++.+.+.........+  ..+.+|||||...        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3478999999999999999999987652 23345555555554455555  4789999999653        23334556


Q ss_pred             cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546           79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGF  157 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (207)
                      +..+|++|||+|+++.-.... ..|...++.   .++|+++|+||+|+.+...   .... + ...+. ..+++||.+|.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~---~~~~-~-~~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASEY---DAAE-F-WKLGLGEPYPISAMHGR  422 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccchh---hHHH-H-HHcCCCCeEEEECCCCC
Confidence            789999999999986321111 234444433   3689999999999854321   1111 1 12233 46899999999


Q ss_pred             ChHHHHHHHHHHcCCC
Q 028546          158 NIKPLFRKIAAALPGM  173 (207)
Q Consensus       158 ~i~~~~~~l~~~~~~~  173 (207)
                      |+.+++++|.+.+...
T Consensus       423 GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        423 GVGDLLDEALDSLKVA  438 (712)
T ss_pred             CchHHHHHHHHhcccc
Confidence            9999999999998653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=6.6e-20  Score=149.62  Aligned_cols=163  Identities=22%  Similarity=0.215  Sum_probs=112.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-----------c
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I   75 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   75 (207)
                      ..++|+++|.+++|||||+++|++... .....++.+.+.....+..++  ..+.+|||||..+....           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            469999999999999999999997653 334455555555555555555  46889999995432211           1


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH-HHHHH----hCCeEEE
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD-GKAKE----FGVMFIE  150 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~  150 (207)
                      ..++..+|++|+|+|++++.+..... ++..+...   ..|+++++||+|+.+...  ..+.. .....    ..+++++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~  323 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---GRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF  323 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence            23578899999999999876555432 23333322   589999999999863321  11121 11111    2468999


Q ss_pred             EecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546          151 TSAKAGFNIKPLFRKIAAALPGMETLSS  178 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~  178 (207)
                      +||++|.|++++++.+.+.+.....+.+
T Consensus       324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~  351 (435)
T PRK00093        324 ISALTGQGVDKLLEAIDEAYENANRRIS  351 (435)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHcCcCC
Confidence            9999999999999999988765544433

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.85  E-value=3.1e-20  Score=150.87  Aligned_cols=155  Identities=20%  Similarity=0.236  Sum_probs=103.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCccccccceeeeEEEEEEC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DTTYQATIGIDFLSKTMYLE   54 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (207)
                      ..+.++|+++|++++|||||+++|++..-                               ..+..++.+++.....+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            34569999999999999999999983211                               12234555666655555444


Q ss_pred             CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--
Q 028546           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--  132 (207)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--  132 (207)
                        .+.+.+|||||+++|.......+..+|++|+|+|+++..++.....+...+....+ ..|+++++||+|+.+..+.  
T Consensus        83 --~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~  159 (425)
T PRK12317         83 --KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRY  159 (425)
T ss_pred             --CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHH
Confidence              46899999999888766555567899999999999862122222222222222222 2469999999998652221  


Q ss_pred             --CHHHHHHHHHHhC-----CeEEEEecCCCCChHHHH
Q 028546          133 --SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       133 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  163 (207)
                        ..+++..+....+     .+++++|+++|.|+++..
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              1233344444444     479999999999998744

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.84  E-value=4.8e-20  Score=149.78  Aligned_cols=154  Identities=20%  Similarity=0.234  Sum_probs=104.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc--CCCC-----------------------------CccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------TTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (207)
                      .+.++|+++|+.++|||||+++|+.  +.+.                             .+..++.+++.....+... 
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-   83 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-   83 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-
Confidence            4569999999999999999999984  2111                             1223455555555555444 


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--  132 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--  132 (207)
                       .+.+.+||+||+++|.......+..+|++|+|+|++++++.... ..+...+....+ ..|++|++||+|+.+..+.  
T Consensus        84 -~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 -KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             -CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHHH
Confidence             46899999999988877666677899999999999986432111 111112222222 3579999999999642221  


Q ss_pred             --CHHHHHHHHHHhC-----CeEEEEecCCCCChHHHH
Q 028546          133 --SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       133 --~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  163 (207)
                        ...++..++...+     ++++++|+++|.|+.+.+
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              1234444555554     579999999999998644

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=1.8e-22  Score=140.05  Aligned_cols=167  Identities=37%  Similarity=0.569  Sum_probs=143.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE-EEEEEEecCChhhhccccccccccCCEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .-++++|+|..|+|||+++.+++...++..+..+.+.++..+....++.. +++.+||..|++++..+..-|++.+++.+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            44899999999999999999999999988888999988888887777653 58999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEFGV-MFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~s~~~~~~i~  160 (207)
                      +|||+++..+|+....|.+.+....    +..+|+++.+||+|+....... ......+.+..++ .++++|++.+.++.
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~  183 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP  183 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence            9999999999999999999875542    3567899999999985432222 3556677777777 79999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028546          161 PLFRKIAAALPGME  174 (207)
Q Consensus       161 ~~~~~l~~~~~~~~  174 (207)
                      |+-+.|.+++....
T Consensus       184 Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  184 EAQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999987554

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.84  E-value=1.3e-19  Score=155.32  Aligned_cols=164  Identities=23%  Similarity=0.276  Sum_probs=115.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh----------hccc-c
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I   75 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~   75 (207)
                      ..++|+++|.+++|||||+++|++.... ....++++.+.....+.+++.  .+.+|||||..+          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            3589999999999999999999988752 334556666666666666664  577999999532          1111 1


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-Hh----CCeEEE
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EF----GVMFIE  150 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~  150 (207)
                      ..+++.+|++++|+|++++.+...+. ++..+..   .++|+++|+||+|+.+...  .+....... .+    ..++++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            23468899999999999877666654 3333332   2589999999999865322  122222221 11    346799


Q ss_pred             EecCCCCChHHHHHHHHHHcCCCccCccc
Q 028546          151 TSAKAGFNIKPLFRKIAAALPGMETLSST  179 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~~  179 (207)
                      +||++|.|++++++.+.+.+.....+.++
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T  629 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALESWDQRIPT  629 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence            99999999999999999998876555444

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.3e-19  Score=143.15  Aligned_cols=152  Identities=25%  Similarity=0.285  Sum_probs=118.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccc--------cccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~~   80 (207)
                      ++++++|.|++|||||+|+|.+... ..+..++++.|+....+.++|  +.+.+.||+|.......++        ..+.
T Consensus       218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            8999999999999999999997766 577889999999999999999  7899999999765444332        2367


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +||.++||+|++.+.+-... ..+.    ....+.|+++|.||.|+..+......     ....+.+++.+|+++|.|++
T Consensus       296 ~ADlvL~v~D~~~~~~~~d~-~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~  365 (454)
T COG0486         296 EADLVLFVLDASQPLDKEDL-ALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLD  365 (454)
T ss_pred             hCCEEEEEEeCCCCCchhhH-HHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHH
Confidence            99999999999975222221 1111    33346899999999999766542211     11224579999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      .+.+.|.+.+...
T Consensus       366 ~L~~~i~~~~~~~  378 (454)
T COG0486         366 ALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999988766

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=6.7e-19  Score=122.68  Aligned_cols=160  Identities=21%  Similarity=0.264  Sum_probs=119.8

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-------ccc---ccceeeeEEEEEECCeEEEEEEEecCChhhhcc
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT-------YQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   73 (207)
                      .+.+...||+|.|+.++||||++.++........       ...   .+++..........+. ..++++||||+.+|.-
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~-~~v~LfgtPGq~RF~f   83 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED-TGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc-ceEEEecCCCcHHHHH
Confidence            3456779999999999999999999987664111       111   1222333333333432 4799999999999999


Q ss_pred             ccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEE
Q 028546           74 LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMFIET  151 (207)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~  151 (207)
                      +|..+.++++++|+++|.+.+..+ .....+..+.....  +|++|.+||.|+.+...  .+.+.......  ..++++.
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceeee
Confidence            999999999999999999998888 44555555544432  89999999999966544  44444444433  7899999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q 028546          152 SAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~  169 (207)
                      ++.++++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999999998877

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.83  E-value=8.8e-20  Score=134.76  Aligned_cols=147  Identities=22%  Similarity=0.273  Sum_probs=95.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CccccccceeeeEEEEEECCeEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------TTYQATIGIDFLSKTMYLEDRTVR   59 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   59 (207)
                      +|+++|++++|||||+++|+...-  .                             .+..+..+++.....+...+  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            689999999999999999974221  1                             11123444444444444444  57


Q ss_pred             EEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----HH
Q 028546           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS----IE  135 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~----~~  135 (207)
                      +.+|||||+.++...+...+..+|++|+|+|++++..-.. ..... +....+ ..++++|+||+|+.+.....    ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHcC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            8999999998887666667899999999999986532111 11112 222222 24578899999986432211    12


Q ss_pred             HHHHHHHHhC---CeEEEEecCCCCChHHH
Q 028546          136 EGDGKAKEFG---VMFIETSAKAGFNIKPL  162 (207)
Q Consensus       136 ~~~~~~~~~~---~~~~~~s~~~~~~i~~~  162 (207)
                      +...+...++   .+++++||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3333444455   35899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=6.4e-20  Score=127.86  Aligned_cols=167  Identities=31%  Similarity=0.542  Sum_probs=144.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++++++|..|.||+|++++.+.+.|...+.++.+.....-.+..+...+++..|||+|++.+......++-++.+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            35799999999999999999999999999999999999988888877766789999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      ++||++..-++.++..|...+.+.+. ++|+++++||.|.... .+ ......+.+..++.+++.|++++-|.+.-|-||
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r-~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR-KV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc-cc-ccccceeeecccceeEEeecccccccccchHHH
Confidence            99999999999999999999988776 4999999999997433 21 112233455668899999999999999999999


Q ss_pred             HHHcCCCccC
Q 028546          167 AAALPGMETL  176 (207)
Q Consensus       167 ~~~~~~~~~~  176 (207)
                      +..+......
T Consensus       165 arKl~G~p~L  174 (216)
T KOG0096|consen  165 ARKLTGDPSL  174 (216)
T ss_pred             hhhhcCCCCe
Confidence            9998765443

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.82  E-value=1.2e-18  Score=130.55  Aligned_cols=152  Identities=22%  Similarity=0.237  Sum_probs=106.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-------cccccccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   83 (207)
                      +++++|++|+|||||+++|.+........+.++.+.....+.+.+  ..+.+||+||.....       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998875444445555566666666666  579999999964322       12345688999


Q ss_pred             EEEEEEECCChH-HHHHHHHHHHHH----------------------------------------HHh------------
Q 028546           84 VAVIVYDVANRQ-SFLNTSRWIEEV----------------------------------------RTE------------  110 (207)
Q Consensus        84 ~~ilv~d~~~~~-s~~~~~~~~~~i----------------------------------------~~~------------  110 (207)
                      ++++|+|+++.. ....+...+..+                                        ...            
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 233232222110                                        000            


Q ss_pred             -----------c--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          111 -----------R--GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       111 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                                 .  ...+|+++|+||+|+...     ++...++.  ...++++|+.++.|++++++.|.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L~  226 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKLG  226 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence                       1  134789999999998532     33333333  346899999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=1.8e-19  Score=150.45  Aligned_cols=159  Identities=18%  Similarity=0.301  Sum_probs=111.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccccceeeeEEEEEECCeEEEEEEEecCChhhhccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY--DKFDTT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   76 (207)
                      +|+++|+.++|||||+++|+.  +.+...            ..+..++++......+....+++.+|||||+.+|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999985  222111            012223444444333333447899999999999999999


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHH-------HHhCCeE
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGDGKA-------KEFGVMF  148 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~-------~~~~~~~  148 (207)
                      .++..+|++++|+|+.+.. ......|+..+...   ++|+++|+||+|+.+.+.. ..+++..+.       ....+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            9999999999999998642 23344555555443   5889999999998543221 112222222       1235689


Q ss_pred             EEEecCCCC----------ChHHHHHHHHHHcCCC
Q 028546          149 IETSAKAGF----------NIKPLFRKIAAALPGM  173 (207)
Q Consensus       149 ~~~s~~~~~----------~i~~~~~~l~~~~~~~  173 (207)
                      +++|+++|.          |+..+|+.+.+.+..-
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            999999996          7999999999988744

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.5e-20  Score=125.32  Aligned_cols=161  Identities=24%  Similarity=0.334  Sum_probs=118.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      .+.+|+++|..|+||+|++.++.-++...+ .|+.+..+.  ++..  +..++.+||.+|+...+..|+.|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            679999999999999999998876665433 445444332  2222  45799999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCCC---CCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           88 VYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKTDLVDKRQ---VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        88 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      |+|.++.+....... ++..+.+....+...+|++||.|.....-   +.........+..-..++.+||..|+|+++.+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            999999887777544 44444444445677899999999743211   11111111122223579999999999999999


Q ss_pred             HHHHHHcCCC
Q 028546          164 RKIAAALPGM  173 (207)
Q Consensus       164 ~~l~~~~~~~  173 (207)
                      +||.+.+.+.
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999987653

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=6.6e-19  Score=147.04  Aligned_cols=160  Identities=18%  Similarity=0.266  Sum_probs=114.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY--DKFDTT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (207)
                      .+|+++|+.++|||||+++|+.  +.+...            ..+..++.+......+....+.+.+|||||+.+|...+
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v   85 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV   85 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence            6899999999999999999996  333221            12344555555555555556899999999999999999


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HhCCe
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ-VSIEEGDGKAK-------EFGVM  147 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  147 (207)
                      ..+++.+|++|+|+|+++....+. ..++..+...   ++|.++++||+|+...+. ...+++..+..       ...++
T Consensus        86 ~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~---gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P  161 (607)
T PRK10218         86 ERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY---GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP  161 (607)
T ss_pred             HHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc---CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence            999999999999999987432222 2333333322   588899999999864322 11222222221       13467


Q ss_pred             EEEEecCCCC----------ChHHHHHHHHHHcCCC
Q 028546          148 FIETSAKAGF----------NIKPLFRKIAAALPGM  173 (207)
Q Consensus       148 ~~~~s~~~~~----------~i~~~~~~l~~~~~~~  173 (207)
                      ++++|+.+|.          ++..+++.+.+.+..-
T Consensus       162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             EEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            9999999998          5899999999988744

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.82  E-value=2.4e-19  Score=144.59  Aligned_cols=163  Identities=22%  Similarity=0.183  Sum_probs=107.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC---CccccccceeeeEEEEE--------------E----CC------eEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---TTYQATIGIDFLSKTMY--------------L----ED------RTVR   59 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~--------------~----~~------~~~~   59 (207)
                      .+.++|+++|++++|||||+++|.+....   .+..+..+++.....+.              .    ++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            45799999999999999999999754221   12222222222211100              0    11      1357


Q ss_pred             EEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHH
Q 028546           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEG  137 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  137 (207)
                      +.+||+||+++|...+...+..+|++++|+|++++.......+.+..+. ..+ ..|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALE-IIG-IKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHH-HcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence            9999999999998888777888999999999996421112222222222 222 2578999999998654321  12333


Q ss_pred             HHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          138 DGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       138 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..+....   +++++++|+++|.|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            3333332   568999999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.82  E-value=8.7e-19  Score=127.76  Aligned_cols=145  Identities=17%  Similarity=0.119  Sum_probs=95.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (207)
                      .++|+++|+.++|||||+++|++...                ..+..+..+++..  ...+.....++.++||||..+|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCCCeEEEEEECcCHHHHH
Confidence            58999999999999999999985310                1112334444433  33343444688999999998887


Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHh----
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEF----  144 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~----  144 (207)
                      ......+..+|++++|+|+..+-.-. ..+.+..+...   ++| +++++||+|+....+..   ..++.......    
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            77777788999999999998642211 22233333322   355 78999999986432211   12334444433    


Q ss_pred             -CCeEEEEecCCCCCh
Q 028546          145 -GVMFIETSAKAGFNI  159 (207)
Q Consensus       145 -~~~~~~~s~~~~~~i  159 (207)
                       +++++++|+++|.++
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence             357999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=137.57  Aligned_cols=167  Identities=25%  Similarity=0.252  Sum_probs=123.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-----------c
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I   75 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   75 (207)
                      ..++|+++|.|++|||||+|++++.+- .....++++.+.....+..+++  ++.++||+|..+-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            459999999999999999999998765 4566788888888888888884  6888899995542221           1


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----h-CCeEEE
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----F-GVMFIE  150 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~~~  150 (207)
                      ...+..+|++++|+|++.+-+-+..  .+..+-...  ..++++++||+|+.+..+...+..+...+.    . ..++++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            2346789999999999965443332  222222222  578999999999987655555444333332    2 358999


Q ss_pred             EecCCCCChHHHHHHHHHHcCCCccCcccc
Q 028546          151 TSAKAGFNIKPLFRKIAAALPGMETLSSTK  180 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~~~~~~~~~  180 (207)
                      +||.+|.++.++|+.+.+.+.....+-++.
T Consensus       331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts  360 (444)
T COG1160         331 ISALTGQGLDKLFEAIKEIYECATRRISTS  360 (444)
T ss_pred             EEecCCCChHHHHHHHHHHHHHhccccCHH
Confidence            999999999999999999988776666554

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.81  E-value=1e-18  Score=146.66  Aligned_cols=155  Identities=17%  Similarity=0.175  Sum_probs=108.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC---CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD---KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      -|+++|+.++|||||+++|.+.   .+.++..++.+++.....+...+. ..+.+||+||+++|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            4789999999999999999963   344455566666655444444332 368999999999987777777889999999


Q ss_pred             EEECCCh---HHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC--HHHHHHHHHHhC---CeEEEEecCCCCC
Q 028546           88 VYDVANR---QSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS--IEEGDGKAKEFG---VMFIETSAKAGFN  158 (207)
Q Consensus        88 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~~~  158 (207)
                      |+|++++   ++.+.+    ..+. ..  ++| ++||+||+|+.++....  .+++..+....+   .+++++|+++|.|
T Consensus        81 VVda~eg~~~qT~ehl----~il~-~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQ-LT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHH-Hc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999863   333332    2222 22  244 68999999986533221  223333433333   5899999999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 028546          159 IKPLFRKIAAALPGM  173 (207)
Q Consensus       159 i~~~~~~l~~~~~~~  173 (207)
                      +++++++|.+.....
T Consensus       154 I~~L~~~L~~~~~~~  168 (614)
T PRK10512        154 IDALREHLLQLPERE  168 (614)
T ss_pred             CHHHHHHHHHhhccc
Confidence            999999998876543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.81  E-value=7.6e-19  Score=141.66  Aligned_cols=164  Identities=20%  Similarity=0.170  Sum_probs=105.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEEEE------------------C--C----eEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYL------------------E--D----RTV   58 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~------------------~--~----~~~   58 (207)
                      ..+.++|+++|+.++|||||+.+|.+...   ..+..+..+++.....+..                  +  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            34569999999999999999999965322   2222233333322111111                  0  0    125


Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HH
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IE  135 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~  135 (207)
                      .+.+|||||+.+|.......+..+|++++|+|++++. ..+. ...+..+... . ..|+++|+||+|+.++.+..  .+
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDII-G-IKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHc-C-CCcEEEEEEeeccccchhHHHHHH
Confidence            7999999999888776655566789999999999542 1111 1112222221 1 24689999999987543321  22


Q ss_pred             HHHHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          136 EGDGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       136 ~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      .+..+...+   +.+++++|+++|.|+++++++|...+..
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            333333322   4689999999999999999999987753

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=1.2e-18  Score=124.06  Aligned_cols=151  Identities=25%  Similarity=0.327  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----------hccccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR   80 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   80 (207)
                      .|+++|.+|+|||||++.+.++.+.....++.+.......+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996655444344443333333343443   899999999432          3333344443


Q ss_pred             ---cCCEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHH--HhCCeEEEE
Q 028546           81 ---DSSVAVIVYDVANRQ--SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAK--EFGVMFIET  151 (207)
Q Consensus        81 ---~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~  151 (207)
                         ..+++++++|..+..  ....+..|+...      ..|+++++||+|+....+..  .........  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               457889999997642  212233333322      47899999999985433211  112222222  234589999


Q ss_pred             ecCCCCChHHHHHHHHHHc
Q 028546          152 SAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~  170 (207)
                      |++++.++.+++++|.+.+
T Consensus       152 Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         152 SSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999998763

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.81  E-value=9.5e-19  Score=145.67  Aligned_cols=155  Identities=19%  Similarity=0.177  Sum_probs=102.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE----------------CCeEEEEEEEecCChhhhcc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL----------------EDRTVRLQLWDTAGQERFRS   73 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~i~D~~G~~~~~~   73 (207)
                      .-|+++|++++|||||+++|.+..+......+.+.++-...+..                +.....+.||||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            45899999999999999999988775332221211111111111                11112489999999999999


Q ss_pred             ccccccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC------------CHHHH-
Q 028546           74 LIPSYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV------------SIEEG-  137 (207)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~~-  137 (207)
                      ++..++..+|++++|+|+++   +++++.+.    .+..   .++|+++++||+|+.+....            ..... 
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            98889999999999999987   44544432    1222   25899999999998642110            00000 


Q ss_pred             -----------HHHHH------------Hh--CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          138 -----------DGKAK------------EF--GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       138 -----------~~~~~------------~~--~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                                 ..+..            .+  ..+++++||++|+|+++++.+|.....
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                       01111            11  357999999999999999999876443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.81  E-value=2e-18  Score=129.28  Aligned_cols=170  Identities=15%  Similarity=0.147  Sum_probs=112.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh------------hccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FRSL   74 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~~~   74 (207)
                      .+-++|+|+|+|++|||||.|.+++.++........++....--+...+ ..++.|+||||.-.            +...
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            4559999999999999999999999999777666665544433333333 36999999999211            1112


Q ss_pred             cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH----------------HHH
Q 028546           75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE----------------EGD  138 (207)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~----------------~~~  138 (207)
                      ....+.+||++++|+|+++....-. -..+..+....  ++|-++|+||+|....+.+...                ...
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            2345678999999999995211111 11222222222  5889999999997644322111                111


Q ss_pred             HHHHHh-------------CCeEEEEecCCCCChHHHHHHHHHHcCCCccCcccc
Q 028546          139 GKAKEF-------------GVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK  180 (207)
Q Consensus       139 ~~~~~~-------------~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~~~  180 (207)
                      ++...-             .-.+|.+||++|.|++++-++|.....-..+.++..
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~  280 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD  280 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence            111110             114899999999999999999999998777766543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.80  E-value=4.3e-19  Score=118.06  Aligned_cols=161  Identities=19%  Similarity=0.238  Sum_probs=118.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ..+++|+++|..++|||||+..|.+..... ..|+.+.  ....+..++. +.+++||.+|+...+..|..|+.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~h-ltpT~GF--n~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH-LTPTNGF--NTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhh-ccccCCc--ceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence            567999999999999999999998776532 2344443  3444545543 69999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH---HHhCCeEEEEecCCCCChHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA---KEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      ||+|.++...|+.+-.-+..+.+. ....+|+++.+||.|+..+..++......-.   +..-..+-+||++.++|+..-
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence            999999988888876655555443 3467999999999998654333221111101   111235678999999999888


Q ss_pred             HHHHHHHcC
Q 028546          163 FRKIAAALP  171 (207)
Q Consensus       163 ~~~l~~~~~  171 (207)
                      .+|+.+...
T Consensus       171 ~~wv~sn~~  179 (185)
T KOG0074|consen  171 SDWVQSNPE  179 (185)
T ss_pred             chhhhcCCC
Confidence            888876543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.80  E-value=6.5e-19  Score=131.12  Aligned_cols=146  Identities=23%  Similarity=0.261  Sum_probs=94.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC---------------------------C----CCccccccceeeeEEEEEECCeEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK---------------------------F----DTTYQATIGIDFLSKTMYLEDRTVR   59 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~   59 (207)
                      +|+++|+.++|||||+.+|+...                           +    ..+..+..+++.....+...+  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            58999999999999999996220                           0    112234445555555555544  68


Q ss_pred             EEEEecCChhhhccccccccccCCEEEEEEECCChHH---H---HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--CC
Q 028546           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS---F---LNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK--RQ  131 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--~~  131 (207)
                      +.+|||||+.++...+...+..+|++|+|+|+++...   +   ......+... ...+ ..|+++++||+|+...  .+
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG-VKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC-CCeEEEEEEccccccccccH
Confidence            9999999988887777777788999999999987421   1   1122222222 2222 3689999999998632  11


Q ss_pred             CCHH----HHHHHHHHhC-----CeEEEEecCCCCChH
Q 028546          132 VSIE----EGDGKAKEFG-----VMFIETSAKAGFNIK  160 (207)
Q Consensus       132 ~~~~----~~~~~~~~~~-----~~~~~~s~~~~~~i~  160 (207)
                      ...+    .+.......+     ++++++||++|.|++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1112    2222233333     579999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=2.7e-18  Score=128.86  Aligned_cols=111  Identities=19%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC--------------CC----ccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF--------------DT----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (207)
                      +|+++|+.|+|||||+++|+...-              ..    +..+..++......+...  ..++.+|||||+.+|.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~--~~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE--DTKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC--CEEEEEEeCCCccchH
Confidence            589999999999999999975311              00    111222333333344444  4689999999999998


Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ..+..+++.+|++++|+|+++.... ....++..+...   ++|+++++||+|+.
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            8888899999999999999975432 234444444433   58999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04167 Snu114p Snu114p subfamily

Probab=99.80  E-value=1.2e-18  Score=129.25  Aligned_cols=113  Identities=27%  Similarity=0.326  Sum_probs=79.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------ccccceeeeE--EEEEE---CCeEEEEEEEecCCh
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTY-----------------QATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQ   68 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~   68 (207)
                      +|+++|+.++|||||+++|+........                 ....++.+..  ..+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999865432110                 0111222222  22222   345679999999999


Q ss_pred             hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      .++......++..+|++|+|+|+.+..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987654433 333333322   248999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=4.7e-18  Score=127.83  Aligned_cols=155  Identities=18%  Similarity=0.193  Sum_probs=119.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------cccccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d   83 (207)
                      .+.+||-|++|||||++++...+.-....+.++......++.+++.. .+++-|.||.-+-.++       ....++.++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            46799999999999999999988877777888888777777777765 5999999995543333       233467899


Q ss_pred             EEEEEEECCCh---HHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q 028546           84 VAVIVYDVANR---QSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGF  157 (207)
Q Consensus        84 ~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (207)
                      .++||+|++.+   ..++.++.+..++..+..  .+.|.++|+||+|+.+..   ...+..+++...- .++++||+.++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e  353 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE  353 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence            99999999987   777777766666655433  578999999999985222   2223555555544 59999999999


Q ss_pred             ChHHHHHHHHHH
Q 028546          158 NIKPLFRKIAAA  169 (207)
Q Consensus       158 ~i~~~~~~l~~~  169 (207)
                      ++.++++.|.+.
T Consensus       354 gl~~ll~~lr~~  365 (366)
T KOG1489|consen  354 GLEELLNGLREL  365 (366)
T ss_pred             chHHHHHHHhhc
Confidence            999999988764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.78  E-value=2.3e-18  Score=117.40  Aligned_cols=135  Identities=23%  Similarity=0.310  Sum_probs=97.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----hhhhccccccccccCCEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i   86 (207)
                      ||+++|+.|+|||||+++|.+...  .+..+..+.+            .=.++||||    ...+.........+||+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998765  3334444321            123479999    3344555555567999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|.|++++.+.-.  ..   +...+  ..|+|=|+||+|+.. .+...+.++++.+.-|+ ++|++|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~~p--P~---fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSVFP--PG---FASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCccCC--ch---hhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            9999997532211  01   11122  479999999999963 23456677777887787 6899999999999999998


Q ss_pred             HH
Q 028546          166 IA  167 (207)
Q Consensus       166 l~  167 (207)
                      |.
T Consensus       141 L~  142 (143)
T PF10662_consen  141 LE  142 (143)
T ss_pred             Hh
Confidence            84

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.78  E-value=1.4e-17  Score=139.11  Aligned_cols=157  Identities=22%  Similarity=0.264  Sum_probs=101.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC------CeE-----E-----EEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE------DRT-----V-----RLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~   70 (207)
                      ....-|+++|++++|||||+++|.+..+........+.++........      +..     .     .++||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            344679999999999999999998765533222211111111000000      111     1     278999999999


Q ss_pred             hccccccccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----H--------H
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS----I--------E  135 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~----~--------~  135 (207)
                      |..++...+..+|++++|+|+++   +++++.+..    +..   .++|+++++||+|+.......    .        .
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888899999999999997   555544432    222   268999999999985321100    0        0


Q ss_pred             -----------HHHHHHHHh---------------CCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          136 -----------EGDGKAKEF---------------GVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       136 -----------~~~~~~~~~---------------~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                                 +........               ..+++++|+.+|.|+++++..+....
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                       000111111               25789999999999999998886533

>PRK12735 elongation factor Tu; Reviewed

Probab=99.78  E-value=1.2e-17  Score=134.36  Aligned_cols=159  Identities=18%  Similarity=0.158  Sum_probs=104.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC-------CC---------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------KF---------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      .+.++|+++|++++|||||+++|++.       .+         ..+..+..+++.  ....+.....++.|+||||+.+
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHH
Confidence            45699999999999999999999862       10         112233444443  3333443445789999999988


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHhC-
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV-LVGNKTDLVDKRQVS---IEEGDGKAKEFG-  145 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~-  145 (207)
                      |.......+..+|++++|+|+.+....+ ..+.+..+...   ++|.+ +++||+|+.+..+..   ..++..+...++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            8776667778999999999998642222 22333333322   46754 689999986432211   123444454443 


Q ss_pred             ----CeEEEEecCCCC----------ChHHHHHHHHHHcC
Q 028546          146 ----VMFIETSAKAGF----------NIKPLFRKIAAALP  171 (207)
Q Consensus       146 ----~~~~~~s~~~~~----------~i~~~~~~l~~~~~  171 (207)
                          ++++++|+.+|.          ++.++++.|...+.
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence                679999999984          57778888877654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.1e-17  Score=134.49  Aligned_cols=159  Identities=18%  Similarity=0.166  Sum_probs=105.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      .+.++|+++|+.++|||||+++|++...                ..+..+..+++.  ....+......+.++||||+.+
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence            3469999999999999999999985211                112234444444  3344444445789999999988


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC-
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG-  145 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-  145 (207)
                      |.......+..+|++++|+|+.++..-.. .+.+..+...   ++| +++++||+|+.++.+..   ..++..+....+ 
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            87766666788999999999986322121 2222223222   466 67899999986433321   123344444444 


Q ss_pred             ----CeEEEEecCCCC--------ChHHHHHHHHHHcC
Q 028546          146 ----VMFIETSAKAGF--------NIKPLFRKIAAALP  171 (207)
Q Consensus       146 ----~~~~~~s~~~~~--------~i~~~~~~l~~~~~  171 (207)
                          ++++++|+++|.        ++.++++.|.+.+.
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence                579999999983        57788888887765

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.6e-17  Score=136.74  Aligned_cols=159  Identities=18%  Similarity=0.243  Sum_probs=124.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc------ccccc-
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI-   79 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~-   79 (207)
                      ++..+++++|+|++|||||+|++++......+.++.+.+.....+...++  ++.++|.||.-.+...      ...|+ 
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            35678999999999999999999999988888999999988888888875  5889999995543332      12222 


Q ss_pred             -ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           80 -RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        80 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                       ...|++|-|+|+++-+.--.+.-.   +.+.   +.|+++++|++|..+.+.+.. +.+++.+.+|+++++++|++|.|
T Consensus        79 ~~~~D~ivnVvDAtnLeRnLyltlQ---LlE~---g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G  151 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNLYLTLQ---LLEL---GIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEG  151 (653)
T ss_pred             cCCCCEEEEEcccchHHHHHHHHHH---HHHc---CCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCC
Confidence             357999999999986543333222   2222   588999999999876665543 45667888999999999999999


Q ss_pred             hHHHHHHHHHHcCCCc
Q 028546          159 IKPLFRKIAAALPGME  174 (207)
Q Consensus       159 i~~~~~~l~~~~~~~~  174 (207)
                      ++++.+.+.+......
T Consensus       152 ~~~l~~~i~~~~~~~~  167 (653)
T COG0370         152 LEELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999998776554

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.77  E-value=1.3e-17  Score=134.27  Aligned_cols=146  Identities=18%  Similarity=0.133  Sum_probs=96.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC----------------CCCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK----------------FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      ..+.++|+++|+.++|||||+++|++..                ...+..+..+++.  ..+.+.....++.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence            4556999999999999999999997320                0122234444544  334444445689999999999


Q ss_pred             hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC
Q 028546           70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG  145 (207)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (207)
                      +|.......+..+|++++|+|+.++...+. .+.+..+...   .+| +++++||+|+.++.+..   ..++..+...++
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            887766666678899999999986322221 2222223222   355 45789999987543321   123445555554


Q ss_pred             -----CeEEEEecCCCC
Q 028546          146 -----VMFIETSAKAGF  157 (207)
Q Consensus       146 -----~~~~~~s~~~~~  157 (207)
                           ++++++|+.+|.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.77  E-value=2.4e-18  Score=138.38  Aligned_cols=169  Identities=26%  Similarity=0.350  Sum_probs=128.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |++....+.++|+++|..|+||||||-.++...|.++-.+-.. .+... ..+....+..+++|++...+-+.....-++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccC-CccCcCcCceEEEecccccchhHHHHHHHh
Confidence            7788889999999999999999999999999998765332221 11111 222333456899999876665666677789


Q ss_pred             cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHhC-C-eEEEEecC
Q 028546           81 DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEE-GDGKAKEFG-V-MFIETSAK  154 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~  154 (207)
                      .||++++||+++++++++.+ ..|+..++...+  ..+|+|||+||.|..+......+. ...+..++. + ..++|||+
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~  158 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL  158 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence            99999999999999999996 779999988874  579999999999987655442222 344444443 2 47999999


Q ss_pred             CCCChHHHHHHHHHHcC
Q 028546          155 AGFNIKPLFRKIAAALP  171 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~~  171 (207)
                      +..++.++|....+.+.
T Consensus       159 ~~~n~~e~fYyaqKaVi  175 (625)
T KOG1707|consen  159 TLANVSELFYYAQKAVI  175 (625)
T ss_pred             hhhhhHhhhhhhhheee
Confidence            99999999998877653

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.76  E-value=1.6e-17  Score=123.61  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=96.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ccceeeeEEEE----------------------EEC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQA--------------TIGIDFLSKTM----------------------YLE   54 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~----------------------~~~   54 (207)
                      ||+++|+.++|||||+++|..+.+......              +.+.......+                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997666432211              11110000000                      011


Q ss_pred             CeEEEEEEEecCChhhhccccccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV  132 (207)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~  132 (207)
                      .....+.++|+||+.+|.......+.  .+|++++|+|+..+.. ....+++..+...   ++|+++|+||+|+.+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence            11347899999999888665544443  6899999999986432 2223333333332   5889999999998643221


Q ss_pred             C--HHHHHHHHH--------------------------HhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546          133 S--IEEGDGKAK--------------------------EFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       133 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .  ...+.....                          ....++|.+|+.+|.|++++...|..+
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence            1  111121211                          012389999999999999998887543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=8.9e-17  Score=125.24  Aligned_cols=157  Identities=20%  Similarity=0.255  Sum_probs=121.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hccccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~   80 (207)
                      ..|.++|=.++|||||+|++++........-..+.+...+.+.+.+. ..+.+.||.|.-+         |.+.... ..
T Consensus       193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~  270 (411)
T COG2262         193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VK  270 (411)
T ss_pred             CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHHHH-hh
Confidence            68999999999999999999988877777788888888899888864 4889999999433         2333322 46


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      .+|+++.|+|++++.-.+.+..-...+.+.....+|+++|+||+|+..+...     ...........+.+||++|.|++
T Consensus       271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~-----~~~~~~~~~~~v~iSA~~~~gl~  345 (411)
T COG2262         271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI-----LAELERGSPNPVFISAKTGEGLD  345 (411)
T ss_pred             cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh-----hhhhhhcCCCeEEEEeccCcCHH
Confidence            8999999999999866666666666666554557999999999998655441     11122222268999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      .+.+.|.+.+...
T Consensus       346 ~L~~~i~~~l~~~  358 (411)
T COG2262         346 LLRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999999988744

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=6.2e-17  Score=130.75  Aligned_cols=147  Identities=17%  Similarity=0.134  Sum_probs=96.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      ..+.++|+++|++++|||||+++|++..-                ..+..++.+++....  .+.....++.++||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHV--EYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEE--EEccCCeEEEEEECCChH
Confidence            34569999999999999999999986311                122224444444333  333334578899999988


Q ss_pred             hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC
Q 028546           70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG  145 (207)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (207)
                      +|.......+..+|++++|+|+..+-. ....+.+..+...   ++| +++++||+|+.+..+..   ..++..+....+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            887777777789999999999986422 1122222323222   467 77899999997543321   123444444433


Q ss_pred             -----CeEEEEecCCCCC
Q 028546          146 -----VMFIETSAKAGFN  158 (207)
Q Consensus       146 -----~~~~~~s~~~~~~  158 (207)
                           ++++++|+.+|.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        163 FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCcceEEEcchhhccc
Confidence                 5799999999874

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.75  E-value=3.8e-17  Score=131.81  Aligned_cols=147  Identities=24%  Similarity=0.267  Sum_probs=95.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCccccccceeeeEEEEEECCe
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DTTYQATIGIDFLSKTMYLEDR   56 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~   56 (207)
                      ++|+++|+.++|||||+++|+...-                                 .++..+..+++.....+...+ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            5899999999999999999962210                                 112223344555444444443 


Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH-
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE-  135 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~-  135 (207)
                       .++.|+||||+++|.......+..+|++++|+|+..+..-+... .+..+. ..+ ..+++|++||+|+.+..+...+ 
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~~~~~-~~~-~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HSYIAS-LLG-IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HHHHHH-HcC-CCcEEEEEEecccccchHHHHHH
Confidence             58999999999988776666788999999999998643222111 111122 222 2468999999998653321122 


Q ss_pred             ---HHHHHHHHhC---CeEEEEecCCCCChHH
Q 028546          136 ---EGDGKAKEFG---VMFIETSAKAGFNIKP  161 (207)
Q Consensus       136 ---~~~~~~~~~~---~~~~~~s~~~~~~i~~  161 (207)
                         +...+...++   ++++++|+.+|.|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence               2222233333   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=7.1e-17  Score=122.32  Aligned_cols=159  Identities=19%  Similarity=0.176  Sum_probs=119.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hc-ccc-------ccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FR-SLI-------PSY   78 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~-~~~-------~~~   78 (207)
                      ....|+|.|.|++|||||++.+.+.+......|.++-.+....+...+  .+++++||||.=+ .. .+.       ...
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            347799999999999999999999999878888888888888876665  5899999999321 11 111       111


Q ss_pred             cccCCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546           79 IRDSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (207)
                      -.-.++++|++|.+.  +-+.+.+..++..+...+.  .|+++|+||+|..+.....  ++.......+. ....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence            123689999999985  5677888999999998886  8999999999986554432  33333444444 478899999


Q ss_pred             CCChHHHHHHHHHHcCC
Q 028546          156 GFNIKPLFRKIAAALPG  172 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~  172 (207)
                      +.+++.+.+.+.....+
T Consensus       321 ~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         321 GCGLDKLREEVRKTALE  337 (346)
T ss_pred             hhhHHHHHHHHHHHhhc
Confidence            99999888888877543

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.1e-16  Score=113.96  Aligned_cols=162  Identities=22%  Similarity=0.216  Sum_probs=107.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhhccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL   74 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   74 (207)
                      +......|+++|..++|||||||++++++--.-...++|.+.....+.+++   .+.++|.||          .+.+..+
T Consensus        20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHHH
Confidence            344557999999999999999999999763222234445555556666666   378999999          3445556


Q ss_pred             ccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--HHHH-HHHHHhCCe-
Q 028546           75 IPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--EEGD-GKAKEFGVM-  147 (207)
Q Consensus        75 ~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~~~~~~~~-  147 (207)
                      +..|++.   -.++++++|+..+-.-.+. +.++-+...   ++|++|++||+|.....+...  ..+. .+....... 
T Consensus        97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~  172 (200)
T COG0218          97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence            6666643   4688999999864332221 222222222   699999999999876544321  1111 111112222 


Q ss_pred             -EEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          148 -FIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       148 -~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                       ++..|+..+.|++++...|.+.+.+.
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~~  199 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWLKEA  199 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHhhcc
Confidence             88999999999999999998877643

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.74  E-value=4.3e-17  Score=133.49  Aligned_cols=151  Identities=21%  Similarity=0.239  Sum_probs=96.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------------CccccccceeeeEEEEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------TTYQATIGIDFLSKTMYL   53 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~~~~   53 (207)
                      ...++|+++|+.++|||||+++|+...-  .                               .+..+..+++.....+..
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4569999999999999999999973321  0                               111223344444334433


Q ss_pred             CCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS  133 (207)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (207)
                      +  ..++.|+||||+.+|.......+..+|++++|+|+..+-.-.....  ..+....+ ..|++|++||+|+.+..+..
T Consensus       105 ~--~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~lg-~~~iIvvvNKiD~~~~~~~~  179 (474)
T PRK05124        105 E--KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLLG-IKHLVVAVNKMDLVDYSEEV  179 (474)
T ss_pred             C--CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHhC-CCceEEEEEeeccccchhHH
Confidence            3  4589999999988886655555789999999999986421111111  11121222 24789999999986433222


Q ss_pred             HHHHH----HHHHHh----CCeEEEEecCCCCChHHH
Q 028546          134 IEEGD----GKAKEF----GVMFIETSAKAGFNIKPL  162 (207)
Q Consensus       134 ~~~~~----~~~~~~----~~~~~~~s~~~~~~i~~~  162 (207)
                      .....    .+....    ..+++++|+++|.|+.++
T Consensus       180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            22222    222232    367999999999998764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=5.9e-17  Score=126.19  Aligned_cols=154  Identities=24%  Similarity=0.322  Sum_probs=107.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC-------------------------------CCCCccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD-------------------------------KFDTTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   55 (207)
                      .+.++++++|+..+|||||+-+|+..                               ...+++.++.+++.....+  ..
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~f--et   82 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKF--ET   82 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEe--ec
Confidence            45699999999999999999998721                               1123344455555554444  44


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---H--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---S--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      ..++++++|+||+.+|-...-.-+.+||++|||+|+.+.+   .  .+.+.+....+....+ -...+|++||+|+.+.+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence            4478999999998888777777788999999999998752   1  1222333333333333 45689999999998876


Q ss_pred             CCCHHHHHHHHHH----hC-----CeEEEEecCCCCChHHHH
Q 028546          131 QVSIEEGDGKAKE----FG-----VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       131 ~~~~~~~~~~~~~----~~-----~~~~~~s~~~~~~i~~~~  163 (207)
                      +-.++++......    .+     ++|+++|+..|+|+.+.-
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence            6666555443332    22     569999999999976544

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=9.5e-17  Score=128.45  Aligned_cols=158  Identities=20%  Similarity=0.272  Sum_probs=117.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC---------------CCCccccccceeeeEEE-EEECCeEEEEEEEecCChhhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDTTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      +--++.|+.+...|||||..+|+...               ...++.++.++.-.... ++.++..+.++++||||+-+|
T Consensus        59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF  138 (650)
T KOG0462|consen   59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF  138 (650)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence            34689999999999999999997211               12233444444444333 344567789999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----hCCe
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----FGVM  147 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~  147 (207)
                      .......+..++++|+|+|++.+-.-+++..++..+..    +.-+|.|+||+|+..++.   +........    ...+
T Consensus       139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adp---e~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADP---ERVENQLFELFDIPPAE  211 (650)
T ss_pred             cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCH---HHHHHHHHHHhcCCccc
Confidence            99999999999999999999976666666665555543    467899999999965543   222222222    2347


Q ss_pred             EEEEecCCCCChHHHHHHHHHHcCC
Q 028546          148 FIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ++.+||++|.|++++++.+++.++.
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhCCC
Confidence            9999999999999999999999874

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.73  E-value=9e-17  Score=130.64  Aligned_cols=149  Identities=19%  Similarity=0.254  Sum_probs=100.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (207)
                      .+.++|+++|+.++|||||+.+|+...                               ...++.+..+++.....  +..
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~--~~~   82 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK--FET   82 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE--ecC
Confidence            346999999999999999999987311                               01222334444444333  444


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHH-------HHHHHHHHHHHhcCCCC-eEEEEEeCCCCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL-------NTSRWIEEVRTERGGDV-IIVLVGNKTDLV  127 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~-p~ivv~nK~D~~  127 (207)
                      ....++++|+||+.+|.......+..+|++|+|+|+++. .|+       ...+.+..+...   .+ +++|++||+|+.
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~  158 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT  158 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence            457899999999999999888889999999999999862 232       222222222221   35 478899999975


Q ss_pred             CCC--CC----CHHHHHHHHHHhC-----CeEEEEecCCCCChHH
Q 028546          128 DKR--QV----SIEEGDGKAKEFG-----VMFIETSAKAGFNIKP  161 (207)
Q Consensus       128 ~~~--~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (207)
                      +..  +.    ..+++..++...+     ++++++|+.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211  11    1334455555555     5799999999999853

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.73  E-value=4.7e-17  Score=120.68  Aligned_cols=113  Identities=19%  Similarity=0.255  Sum_probs=79.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC--C--------------CccccccceeeeEEEEEEC--------CeEEEEEEEecC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF--D--------------TTYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA   66 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   66 (207)
                      +|+++|+.++|||||+.+|+...-  .              .+..+..++......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999974321  0              1111222333222233333        336789999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      |+.+|......++..+|++++|+|+.++...+... .+.....   .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~-~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTET-VLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECCCcc
Confidence            99999999999999999999999999765444422 2222222   257899999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.73  E-value=1.4e-16  Score=129.65  Aligned_cols=150  Identities=21%  Similarity=0.213  Sum_probs=97.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CC-----------------------------CCccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF-----------------------------DTTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   55 (207)
                      .+.++|+++|+.++|||||+.+|+..  ..                             ..+..+..+++.....+  ..
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~~   82 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ET   82 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--cc
Confidence            45699999999999999999999741  10                             12223444455444444  44


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HH---HHHHHHHHHHHHhcCCCCe-EEEEEeCCCCC-
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SF---LNTSRWIEEVRTERGGDVI-IVLVGNKTDLV-  127 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~-  127 (207)
                      ....+.|+|+||+.+|.......+..+|++++|+|++.+.   .+   ....+.+..+...   .+| ++|++||+|.. 
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence            4468999999999999888888889999999999998642   01   1122222222222   354 78999999943 


Q ss_pred             -CCCCCCHHH----HHHHHHHh-----CCeEEEEecCCCCChHH
Q 028546          128 -DKRQVSIEE----GDGKAKEF-----GVMFIETSAKAGFNIKP  161 (207)
Q Consensus       128 -~~~~~~~~~----~~~~~~~~-----~~~~~~~s~~~~~~i~~  161 (207)
                       +..+..+++    +.......     +++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence             222222222    23333322     35799999999999864

>cd01850 CDC_Septin CDC/Septin

Probab=99.73  E-value=1.6e-16  Score=121.78  Aligned_cols=143  Identities=13%  Similarity=0.171  Sum_probs=94.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-----
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----   73 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----   73 (207)
                      .++|+|+|..|+|||||+|+|++..+....          .++.++......+..++..+++.+|||||..+...     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            589999999999999999999988775432          23334455555666677778999999999432211     


Q ss_pred             ---------------------ccccccc--cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           74 ---------------------LIPSYIR--DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        74 ---------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                                           .....+.  .+|+++|+++.+.. .+... ...+..+..    .+|+++|+||+|+...
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~  158 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK----RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc----cCCEEEEEECCCcCCH
Confidence                                 0112222  47888888887741 11111 233333332    5899999999998653


Q ss_pred             CC--CCHHHHHHHHHHhCCeEEEEecCCC
Q 028546          130 RQ--VSIEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      .+  .....+.+.+..+++++|.....+.
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~  187 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE  187 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence            33  3345566677788999988765443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.73  E-value=2.2e-16  Score=126.98  Aligned_cols=159  Identities=18%  Similarity=0.158  Sum_probs=103.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      .+.++|+++|+.++|||||+++|++...                ..+..+..+++..  ...+.....++.++||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHH
Confidence            4569999999999999999999986311                1122344444443  344443445789999999988


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHh--
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV-LVGNKTDLVDKRQVS---IEEGDGKAKEF--  144 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~--  144 (207)
                      |.......+..+|++++|+|+.++.. ....+.+..+...   ++|.+ +++||+|+.+..+..   ..++..+....  
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            87777777889999999999986422 1222333333322   46765 689999986432211   12233333333  


Q ss_pred             ---CCeEEEEecCCCC----------ChHHHHHHHHHHcC
Q 028546          145 ---GVMFIETSAKAGF----------NIKPLFRKIAAALP  171 (207)
Q Consensus       145 ---~~~~~~~s~~~~~----------~i~~~~~~l~~~~~  171 (207)
                         +++++++|+++|.          ++..+++.|.+.+.
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence               3579999999875          45667777766543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.73  E-value=1.6e-16  Score=116.38  Aligned_cols=158  Identities=15%  Similarity=0.177  Sum_probs=95.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccc-ee--eeEEEEEECCeEEEEEEEecCChhhhcccccc-----ccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG-ID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-----YIR   80 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~   80 (207)
                      +++|+++|.+|+|||||+|++++...........+ ..  .....+.... ...+.+||+||..........     .+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            47999999999999999999998665432222111 11  1111111111 237899999996533222222     256


Q ss_pred             cCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-----------CHHHHHHHHH----Hh
Q 028546           81 DSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-----------SIEEGDGKAK----EF  144 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-----------~~~~~~~~~~----~~  144 (207)
                      ++|+++++.+..    +.. ...+++.+...   ..|+++|+||+|+....+.           ..+.++..+.    ..
T Consensus        80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            789998885432    222 23444555443   4789999999998432110           0111111222    11


Q ss_pred             C---CeEEEEecC--CCCChHHHHHHHHHHcCCCc
Q 028546          145 G---VMFIETSAK--AGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       145 ~---~~~~~~s~~--~~~~i~~~~~~l~~~~~~~~  174 (207)
                      +   .++|.+|+.  .+.++..+.+.|+..+.+.+
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence            2   368999998  57899999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=8.1e-17  Score=136.66  Aligned_cols=153  Identities=24%  Similarity=0.266  Sum_probs=96.7

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------------CccccccceeeeEEE
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------------TTYQATIGIDFLSKT   50 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~--~-------------------------------~~~~~~~~~~~~~~~   50 (207)
                      .+....++|+++|++++|||||+++|+...-  .                               .+..++.+++.....
T Consensus        19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~   98 (632)
T PRK05506         19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY   98 (632)
T ss_pred             ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence            4455679999999999999999999985321  0                               011122333333333


Q ss_pred             EEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           51 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        51 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      +..++  .++.|+||||+++|.......+..+|++++|+|+..+..-+. .+.+..+.. .+ ..+++|++||+|+.+..
T Consensus        99 ~~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~-~~-~~~iivvvNK~D~~~~~  173 (632)
T PRK05506         99 FATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASL-LG-IRHVVLAVNKMDLVDYD  173 (632)
T ss_pred             EccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHH-hC-CCeEEEEEEecccccch
Confidence            43333  578899999998876655556789999999999986432211 111111221 22 35789999999986422


Q ss_pred             CCCHH----HHHHHHHHhC---CeEEEEecCCCCChHH
Q 028546          131 QVSIE----EGDGKAKEFG---VMFIETSAKAGFNIKP  161 (207)
Q Consensus       131 ~~~~~----~~~~~~~~~~---~~~~~~s~~~~~~i~~  161 (207)
                      +...+    +...+...++   .+++++|+++|.|+.+
T Consensus       174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            21122    2222333444   3699999999999874

>PLN03126 Elongation factor Tu; Provisional

Probab=99.72  E-value=3.1e-16  Score=128.09  Aligned_cols=146  Identities=17%  Similarity=0.118  Sum_probs=96.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC------C----------CCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK------F----------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      .+.++|+++|++++|||||+++|++..      .          ..+..+..+++.....+..+  ...+.++|+||+++
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~--~~~i~liDtPGh~~  156 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE--NRHYAHVDCPGHAD  156 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC--CcEEEEEECCCHHH
Confidence            446999999999999999999998521      1          12233444444433344333  35889999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHh--
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEF--  144 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~--  144 (207)
                      |.......+..+|++++|+|+.++..-+ ..+++..+...   .+| ++|++||+|+.+..+..   ..++..+....  
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            8887777778999999999998643222 23333333322   466 78899999987533221   12333444443  


Q ss_pred             ---CCeEEEEecCCCCC
Q 028546          145 ---GVMFIETSAKAGFN  158 (207)
Q Consensus       145 ---~~~~~~~s~~~~~~  158 (207)
                         +++++++|+.+|.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence               45799999998853

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=2.8e-16  Score=119.90  Aligned_cols=116  Identities=23%  Similarity=0.283  Sum_probs=78.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC--CCCc------------------cccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK--FDTT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      -+|+++|++|+|||||+++|+...  ....                  .....++.+......+....+++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            479999999999999999997421  1000                  00111233333333444445789999999999


Q ss_pred             hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      +|.......++.+|++|+|+|+++..... ...++.....   .++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~---~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL---RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh---cCCCEEEEEECCccCCC
Confidence            88887777889999999999998643222 2333333322   25899999999997543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.9e-17  Score=111.21  Aligned_cols=156  Identities=17%  Similarity=0.223  Sum_probs=117.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      |.=|++++|..++|||||++.|..++..+.   ..+.+.......+.+  .+++.+|.+|+..-+..|..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qh---vPTlHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQH---VPTLHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHcccccccc---CCCcCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            456899999999999999999987776432   222233344444555  789999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----------------CCeEE
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----------------GVMFI  149 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~  149 (207)
                      .+|+-+.+.|...+..++.+.... ...+|+++.+||+|...+.  ..++.+....-+                 .+++|
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            999999999998877776654433 3579999999999986543  333332221111                 13589


Q ss_pred             EEecCCCCChHHHHHHHHHHc
Q 028546          150 ETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      .||...+.+.-+.|.|+.+.+
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            999999999889999887654

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=3.9e-16  Score=126.87  Aligned_cols=159  Identities=18%  Similarity=0.145  Sum_probs=100.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC------C----------CCCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD------K----------FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      .+.++|+++|+.++|||||+++|.+.      .          ...+..+..+++...  ..+.....++.++||||+.+
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAH--VEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeE--EEEcCCCeEEEEEECCCccc
Confidence            34599999999999999999999621      1          112233455555443  33444446889999999988


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHh--
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVSI---EEGDGKAKEF--  144 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~--  144 (207)
                      |.......+..+|++++|+|+.++..-+ ..+.+..+...   ++| +++++||+|+.++.+...   .++..+...+  
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            7666655667899999999998642211 12222222222   477 578999999875332111   1222333322  


Q ss_pred             ---CCeEEEEecC---CCCC-------hHHHHHHHHHHcC
Q 028546          145 ---GVMFIETSAK---AGFN-------IKPLFRKIAAALP  171 (207)
Q Consensus       145 ---~~~~~~~s~~---~~~~-------i~~~~~~l~~~~~  171 (207)
                         .++++++|+.   +|.|       +.++++.|.+.+.
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence               2578888875   4555       6788888877654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.71  E-value=4.4e-16  Score=128.72  Aligned_cols=117  Identities=22%  Similarity=0.281  Sum_probs=80.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc--CCCC----------------C--ccccccceeeeEEEEEECCeEEEEEEEecC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD----------------T--TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~--~~~~----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (207)
                      .+..+|+++|++++|||||.++|+.  +...                .  ......++.+......+....+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4557999999999999999999973  1110                0  001122333333333343344789999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      |+.+|......++..+|++|+|+|+++.-.. ....++.....   .++|+++++||+|+.
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            9999988778888999999999999864322 22334433332   268999999999974

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.71  E-value=2.8e-16  Score=116.53  Aligned_cols=158  Identities=21%  Similarity=0.308  Sum_probs=98.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-----ccccccccCCE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV   84 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~   84 (207)
                      ||+++|+.+|||||+...++.+..+ ++..-..+.++....+...+. +.+.+||+||+..+-.     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999999988877654 333334455555555543433 5899999999875433     34667899999


Q ss_pred             EEEEEECCChH---HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C----HHHHHHHHHHhC---CeEEEEe
Q 028546           85 AVIVYDVANRQ---SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S----IEEGDGKAKEFG---VMFIETS  152 (207)
Q Consensus        85 ~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~----~~~~~~~~~~~~---~~~~~~s  152 (207)
                      +|||+|+...+   .+..+...++.+.+. ++++.+.|+++|+|+..+...  .    .+.+...+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            99999998433   333344444444444 347889999999998644221  1    222333344445   7889999


Q ss_pred             cCCCCChHHHHHHHHHHcC
Q 028546          153 AKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..+. .+-+++..+++.+-
T Consensus       159 I~D~-Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  159 IWDE-SLYEAWSKIVQKLI  176 (232)
T ss_dssp             TTST-HHHHHHHHHHHTTS
T ss_pred             CcCc-HHHHHHHHHHHHHc
Confidence            9995 77788877777654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.70  E-value=2.6e-16  Score=127.80  Aligned_cols=166  Identities=18%  Similarity=0.150  Sum_probs=107.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEE---------------EECC-----------
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTM---------------YLED-----------   55 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-----------   55 (207)
                      .....++|.++|+...|||||+.+|.+-..   ..+..+..+++.-....               ....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            445679999999999999999999996433   33333333332221111               0110           


Q ss_pred             -----eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           56 -----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        56 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                           ....+.|+|+||+++|.......+..+|++++|+|+.++.......+.+. +....+ -.+++|++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHH
Confidence                 01368999999999987777777789999999999996311111122222 222222 24689999999987532


Q ss_pred             CC--CHHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          131 QV--SIEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       131 ~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ..  ..+++..+...   .+.+++++|+.+|.|+++|++.|.+.+..
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            21  12223333222   25689999999999999999999986653

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=7.7e-16  Score=123.59  Aligned_cols=157  Identities=20%  Similarity=0.252  Sum_probs=113.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .=+.++|+...|||||+..+....+.....-..+-++.-..+..+. ....++|+||||++.|..+...-..-+|++|||
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            4588999999999999999998888655455555455444555441 224899999999999999998888889999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCCh
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG---------VMFIETSAKAGFNI  159 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~i  159 (207)
                      +|+++.---++ .+.+...+   ..++|++|++||+|..+.   ..+........++         ..++++||++|+|+
T Consensus        86 Va~dDGv~pQT-iEAI~hak---~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi  158 (509)
T COG0532          86 VAADDGVMPQT-IEAINHAK---AAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI  158 (509)
T ss_pred             EEccCCcchhH-HHHHHHHH---HCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence            99997322122 22222233   337999999999998633   2333333333333         35899999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028546          160 KPLFRKIAAALPGM  173 (207)
Q Consensus       160 ~~~~~~l~~~~~~~  173 (207)
                      .+|+..++-...-+
T Consensus       159 ~eLL~~ill~aev~  172 (509)
T COG0532         159 DELLELILLLAEVL  172 (509)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999988766544

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.70  E-value=2e-16  Score=120.49  Aligned_cols=163  Identities=15%  Similarity=0.081  Sum_probs=117.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~d   83 (207)
                      .|.+||.|++||||||+++...+.--...+.++.......+.+.+.. .|.+-|.||.-.-       .......+..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~-sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE-SFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC-cEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            36789999999999999999888876777888877777777764433 7999999994332       222334467899


Q ss_pred             EEEEEEECCChH---HHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE-EEecCCCC
Q 028546           84 VAVIVYDVANRQ---SFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFI-ETSAKAGF  157 (207)
Q Consensus        84 ~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~  157 (207)
                      ++++|+|++..+   ..+.......++..+..  .++|.+||+||+|+..+.+........+.+..+...+ ++|+.++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            999999998533   23444444444443322  4689999999999766655545555555555554332 39999999


Q ss_pred             ChHHHHHHHHHHcCCCc
Q 028546          158 NIKPLFRKIAAALPGME  174 (207)
Q Consensus       158 ~i~~~~~~l~~~~~~~~  174 (207)
                      |++++...+.+.+....
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999887665

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.70  E-value=3.2e-16  Score=119.72  Aligned_cols=112  Identities=21%  Similarity=0.262  Sum_probs=80.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC--CC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD--KF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (207)
                      +|+++|++++|||||+++|+..  ..                +.+..+..+++.....+.+.+  .++.+|||||..++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            5899999999999999999731  11                122334445555555555555  689999999999888


Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      ..+...+..+|++|+|+|+.+...-.. ...+..+...   ++|+++++||+|+.+
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence            888889999999999999986432222 2333333322   589999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.70  E-value=7.4e-16  Score=119.84  Aligned_cols=165  Identities=19%  Similarity=0.259  Sum_probs=105.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE---------------------CC-eEEEEEEEecCCh-
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL---------------------ED-RTVRLQLWDTAGQ-   68 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~-   68 (207)
                      |+++|.|++|||||+++|++..+.....+.++++.......+                     ++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999998765444455544444333322                     22 3367999999996 


Q ss_pred             ---hhhcccccc---ccccCCEEEEEEECCC---------------h-HHHHHH----HHH-H-------HHHH------
Q 028546           69 ---ERFRSLIPS---YIRDSSVAVIVYDVAN---------------R-QSFLNT----SRW-I-------EEVR------  108 (207)
Q Consensus        69 ---~~~~~~~~~---~~~~~d~~ilv~d~~~---------------~-~s~~~~----~~~-~-------~~i~------  108 (207)
                         ++...+...   .++++|++++|+|+..               + ..++.+    ..| +       ..+.      
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333333   4899999999999973               0 011111    111 0       0000      


Q ss_pred             ---------------------------Hh---------------------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH
Q 028546          109 ---------------------------TE---------------------RGGDVIIVLVGNKTDLVDKRQVSIEEGDGK  140 (207)
Q Consensus       109 ---------------------------~~---------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  140 (207)
                                                 ..                     ....+|+++++||+|+.+..+.    ...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l  236 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL  236 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence                                       00                     1235799999999997533221    1112


Q ss_pred             HHHh-CCeEEEEecCCCCChHHHHH-HHHHHcCCCccCcccc
Q 028546          141 AKEF-GVMFIETSAKAGFNIKPLFR-KIAAALPGMETLSSTK  180 (207)
Q Consensus       141 ~~~~-~~~~~~~s~~~~~~i~~~~~-~l~~~~~~~~~~~~~~  180 (207)
                      .... ...++++|++.+.+++++.+ .+.+.+++......+.
T Consensus       237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~  278 (318)
T cd01899         237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD  278 (318)
T ss_pred             HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence            2222 45799999999999999998 6999998765544333

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK13351 elongation factor G; Reviewed

Probab=99.69  E-value=1e-15  Score=131.27  Aligned_cols=118  Identities=19%  Similarity=0.276  Sum_probs=83.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC--------CC----------ccccccceeeeEEEEEECCeEEEEEEEecC
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKF--------DT----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (207)
                      +...-.+|+|+|+.++|||||+++|+...-        ..          +.....++......+.+.+  +.+.+||||
T Consensus         4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtP   81 (687)
T PRK13351          4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTP   81 (687)
T ss_pred             ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECC
Confidence            334458999999999999999999984210        00          0112223333333444443  689999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      |+.++...+..+++.+|++|+|+|+++.........| ..+...   ++|+++++||+|+..
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~---~~p~iiviNK~D~~~  139 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY---GIPRLIFINKMDRVG  139 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc---CCCEEEEEECCCCCC
Confidence            9999998899999999999999999976655544333 333322   589999999999763

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=7.4e-17  Score=123.67  Aligned_cols=154  Identities=15%  Similarity=0.216  Sum_probs=99.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (207)
                      +|+++|++|+|||||++++++..-...                  ..+..++......+.+++  +.+.+|||||..++.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            589999999999999999974321100                  011222222233344444  689999999998888


Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH-HHHHHHHHhCCeEE--
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE-EGDGKAKEFGVMFI--  149 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~--  149 (207)
                      ..+..++..+|++++|+|++..........| ..+..   .++|.++++||+|....   ... ....+...++.+++  
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence            8888889999999999999875444333222 22332   25899999999998543   222 23333344555444  


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      .+...++.++..+.+.+.......
T Consensus       152 ~ip~~~~~~~~~~vd~~~~~~~~~  175 (268)
T cd04170         152 QLPIGEGDDFKGVVDLLTEKAYIY  175 (268)
T ss_pred             EecccCCCceeEEEEcccCEEEEc
Confidence            445677777777766665554433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2.5e-15  Score=113.72  Aligned_cols=156  Identities=22%  Similarity=0.219  Sum_probs=117.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR   80 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~   80 (207)
                      ..-+++++|.|++|||||++.|++........+.++.......+.+++  .++++.|+||.-.-       .......++
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            347899999999999999999999988777778888888888888888  67999999983321       234566789


Q ss_pred             cCCEEEEEEECCChHH-HHHHHHHHHHHHHh-------------------------------------------------
Q 028546           81 DSSVAVIVYDVANRQS-FLNTSRWIEEVRTE-------------------------------------------------  110 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~-------------------------------------------------  110 (207)
                      +||++++|+|+..... .+.+.+.+....-+                                                 
T Consensus       140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            9999999999985443 44444444332110                                                 


Q ss_pred             ----------------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          111 ----------------RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       111 ----------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                                      .-..+|.++|+||+|+..     .++...+.+..  ..+++|+..+.|++++.+.|.+.+.-
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                            112688999999999854     22333333333  89999999999999999999998753

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.68  E-value=1.4e-15  Score=102.09  Aligned_cols=106  Identities=21%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------ccccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   80 (207)
                      +|+|+|.+|+|||||+|+|++... .....+..+.......+.+++.  .+.++||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998644 2333344444544455566764  5679999995321         112233348


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK  123 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  123 (207)
                      .+|++++|+|++++.. +.....+..+.    ...|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999876322 22333334442    36999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.67  E-value=4.4e-15  Score=108.75  Aligned_cols=160  Identities=11%  Similarity=0.129  Sum_probs=102.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc--ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------c----cc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------L----IP   76 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~----~~   76 (207)
                      ++|+++|.+|+|||||+|++++.......  .+..+.........+.+  ..+.++||||..+...       .    ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999988654332  23334444444444555  4799999999654321       1    11


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHhCCeE
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVS------IEEGDGKAKEFGVMF  148 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~  148 (207)
                      ....+.|++|||+++.+. + ......++.+...++.  -.++++++|+.|......+.      ....+.+....+-.+
T Consensus        79 ~~~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            224678999999999862 2 1223334444444331  24688999999965543211      134455555556566


Q ss_pred             EEEec-----CCCCChHHHHHHHHHHcCCC
Q 028546          149 IETSA-----KAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       149 ~~~s~-----~~~~~i~~~~~~l~~~~~~~  173 (207)
                      +..+.     ..+.+++++++.+.+++.+.
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            55554     45678999999999888763

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=2.4e-15  Score=124.39  Aligned_cols=118  Identities=22%  Similarity=0.269  Sum_probs=81.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc--CCCCC------------------ccccccceeeeEEEEEECCeEEEEEEEec
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMY--DKFDT------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (207)
                      ..+..+|+|+|++++|||||+++|+.  +....                  ......++.+......++...+.+.+|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            34567999999999999999999862  11100                  00112234444444445555579999999


Q ss_pred             CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ||+.+|.......+..+|++|+|+|+++.-. .....++.....   .++|+++++||+|+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            9999888877778899999999999986421 112334443332   258999999999974

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=1.9e-15  Score=119.34  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=121.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC---------------CCCccccccceeeeEEEEEE---CCeEEEEEEEecCChh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDTTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE   69 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   69 (207)
                      +--+..++.+-..|||||..+++...               ..-++.++.++......+.+   ++..|.++++||||+-
T Consensus         8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV   87 (603)
T COG0481           8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   87 (603)
T ss_pred             hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence            33678999999999999999997221               12234455555544444433   4577999999999999


Q ss_pred             hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q 028546           70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---  146 (207)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  146 (207)
                      +|...+...+..|.+.++|+|++-+-.-+++...|..+..    +.-++-|+||+||..+..  .....+..+-.|+   
T Consensus        88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~  161 (603)
T COG0481          88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDAS  161 (603)
T ss_pred             ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcc
Confidence            9999999999999999999999976666777777777754    466899999999964432  1122334444565   


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          147 MFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ..+.+||++|.|++++++.+++.++.-
T Consensus       162 dav~~SAKtG~gI~~iLe~Iv~~iP~P  188 (603)
T COG0481         162 DAVLVSAKTGIGIEDVLEAIVEKIPPP  188 (603)
T ss_pred             hheeEecccCCCHHHHHHHHHhhCCCC
Confidence            589999999999999999999998743

>PRK12739 elongation factor G; Reviewed

Probab=99.66  E-value=6.1e-15  Score=126.31  Aligned_cols=117  Identities=19%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-----C-------------CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-----F-------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ..+-.+|+++|++++|||||+++|+...     .             ..+..+..+++.....+.+++  .++.++||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            3445789999999999999999997421     0             111244556666666666655  5899999999


Q ss_pred             hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      +.++...+...+..+|++|+|+|+.++-..... ..+..+...   ++|+++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~---~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY---GVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCEEEEEECCCCCC
Confidence            998888888889999999999999865332222 222333322   588999999999863

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=4.4e-15  Score=119.09  Aligned_cols=157  Identities=20%  Similarity=0.182  Sum_probs=114.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ..=|.++|+...|||||+.+|....+......+.+-++--..+....+ -.++|.||||+.-|..|...-..-+|++++|
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            355889999999999999999988875443444444444444445543 5899999999999999999988999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCCh
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG---------VMFIETSAKAGFNI  159 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~i  159 (207)
                      +.+.|+---++ .   +.+......++|++|.+||+|..   +...+...+....++         ..++++|+++|.|+
T Consensus       232 VAadDGVmpQT-~---EaIkhAk~A~VpiVvAinKiDkp---~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl  304 (683)
T KOG1145|consen  232 VAADDGVMPQT-L---EAIKHAKSANVPIVVAINKIDKP---GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL  304 (683)
T ss_pred             EEccCCccHhH-H---HHHHHHHhcCCCEEEEEeccCCC---CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence            99997322122 2   22333334479999999999975   334444444444443         35899999999999


Q ss_pred             HHHHHHHHHHcCCC
Q 028546          160 KPLFRKIAAALPGM  173 (207)
Q Consensus       160 ~~~~~~l~~~~~~~  173 (207)
                      +.|.+.+.-+..-+
T Consensus       305 ~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  305 DLLEEAILLLAEVM  318 (683)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999888765544

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.7e-15  Score=120.10  Aligned_cols=163  Identities=21%  Similarity=0.214  Sum_probs=112.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hcccc--------ccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLI--------PSY   78 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~--------~~~   78 (207)
                      .++|+++|+|++|||||+|+|..... .....++++.|.....++++|  +++.+.||+|..+ -....        ...
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            48999999999999999999998776 466788999999888998888  6888999999665 11111        223


Q ss_pred             cccCCEEEEEEECCChH--HHHHHHHHHHHHHHhc------CCCCeEEEEEeCCCCCCC-CCCCHHHHHHHHHH--hCC-
Q 028546           79 IRDSSVAVIVYDVANRQ--SFLNTSRWIEEVRTER------GGDVIIVLVGNKTDLVDK-RQVSIEEGDGKAKE--FGV-  146 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~------~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~--~~~-  146 (207)
                      +..+|++++|+|+...+  +-..+.+.++......      ....++++++||.|+..+ .+..-....+....  -.+ 
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~  425 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP  425 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence            67899999999995322  2222334444332221      234789999999998655 12111111111111  123 


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          147 MFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      .+.++|+.+++|++.+...|...+...
T Consensus       426 i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  426 IVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             eEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            356699999999999999999887644

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.63  E-value=2e-14  Score=115.08  Aligned_cols=166  Identities=19%  Similarity=0.250  Sum_probs=106.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE---------------------C-CeEEEEEEEecCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL---------------------E-DRTVRLQLWDTAG   67 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   67 (207)
                      ++|+++|.|++|||||+++|.+..+.....+..+++.......+                     + .....+.+||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988876544455555555444332                     1 1235789999999


Q ss_pred             hh----hhccccccc---cccCCEEEEEEECCC---------------h-HHHHHH----HHH--------HHHH-----
Q 028546           68 QE----RFRSLIPSY---IRDSSVAVIVYDVAN---------------R-QSFLNT----SRW--------IEEV-----  107 (207)
Q Consensus        68 ~~----~~~~~~~~~---~~~~d~~ilv~d~~~---------------~-~s~~~~----~~~--------~~~i-----  107 (207)
                      .-    ....+...+   ++++|++++|+|+..               + ..++.+    ..|        +..+     
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            42    222232333   889999999999961               0 011110    000        0000     


Q ss_pred             ---------------------------HH-h---------------------cCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546          108 ---------------------------RT-E---------------------RGGDVIIVLVGNKTDLVDKRQVSIEEGD  138 (207)
Q Consensus       108 ---------------------------~~-~---------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~  138 (207)
                                                 .. .                     ....+|+++|+||.|......    ...
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~----~l~  237 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE----NIE  237 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH----HHH
Confidence                                       00 0                     113589999999999743222    112


Q ss_pred             HHHHHhCCeEEEEecCCCCChHH-HHHHHHHHcCCCccCccc
Q 028546          139 GKAKEFGVMFIETSAKAGFNIKP-LFRKIAAALPGMETLSST  179 (207)
Q Consensus       139 ~~~~~~~~~~~~~s~~~~~~i~~-~~~~l~~~~~~~~~~~~~  179 (207)
                      .+...-+..++++||..+.++.+ +.+.+.+.+++...-++.
T Consensus       238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~  279 (396)
T PRK09602        238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL  279 (396)
T ss_pred             HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence            22222345799999999999999 889999988877655544

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=9.6e-15  Score=125.15  Aligned_cols=120  Identities=18%  Similarity=0.171  Sum_probs=85.5

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCC--C----------------CCccccccceeeeEEEEEECCeEEEEEEEec
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDK--F----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (207)
                      .+..+-.+|+|+|++++|||||+++|+...  .                ..+..+..+++.....+.+.+  +++.+|||
T Consensus         5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDT   82 (689)
T TIGR00484         5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDT   82 (689)
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEEC
Confidence            344444699999999999999999997311  1                011224445555555666655  68999999


Q ss_pred             CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      ||+.++...+...+..+|++|+|+|+.+....+.. .++..+...   ++|+++++||+|+...
T Consensus        83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY---EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc---CCCEEEEEECCCCCCC
Confidence            99998888888889999999999999875444332 222333322   5899999999998653

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00007 elongation factor G; Reviewed

Probab=99.62  E-value=4.9e-14  Score=120.79  Aligned_cols=116  Identities=19%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc--CCC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMY--DKF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ..+-.+|+++|++++|||||+++|+.  +..                ..+..+..+++.....+.+.+  ..+.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            33446999999999999999999973  111                011234555555556666655  5899999999


Q ss_pred             hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      +.++.......+..+|++|+|+|+...-..++.. .+..+...   ++|+++++||+|+.
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~---~~p~iv~vNK~D~~  140 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY---KVPRIAFVNKMDRT  140 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc---CCCEEEEEECCCCC
Confidence            9888777777788999999999998653333322 22223322   57899999999985

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=3.7e-15  Score=110.63  Aligned_cols=163  Identities=20%  Similarity=0.327  Sum_probs=108.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE-EECCeEEEEEEEecCChhh-------hcccccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQER-------FRSLIPS   77 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~-------~~~~~~~   77 (207)
                      .-.+++|+++|..|+|||||+|+|+++...+...-..+.+...... .+++  -.+.+||+||-.+       |+.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            3456999999999999999999999766644433233333222221 2233  2799999999444       7777888


Q ss_pred             ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC--------CCCH---HHHHHHHHH---
Q 028546           78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR--------QVSI---EEGDGKAKE---  143 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~--------~~~~---~~~~~~~~~---  143 (207)
                      ++...|.++++.++.++. +..-..++..+..... +.++++++|+.|...+-        ....   +.+++.+..   
T Consensus       114 ~l~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRA-LGTDEDFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCcc-ccCCHHHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            899999999999998753 2222233333433332 47899999999976441        1111   111111111   


Q ss_pred             -h--CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          144 -F--GVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       144 -~--~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                       .  =-+++.++...+.|++++...++..+..
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence             1  1368888999999999999999999873

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.61  E-value=1.4e-15  Score=108.32  Aligned_cols=119  Identities=18%  Similarity=0.343  Sum_probs=71.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE-CCeEEEEEEEecCChhhhcccccc---ccccCC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPS---YIRDSS   83 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d   83 (207)
                      ++-.|+++|+.|||||+|+.+|..+....+..+. ...   ....+ ......+.++|+||+.+.+.....   +...+.
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n---~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k   77 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENN---IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK   77 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---S-SEE---EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCC---ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence            3457899999999999999999999765443333 111   11112 122237899999999998875544   478899


Q ss_pred             EEEEEEECCC-hHHHHHHHHH-HHHHHHh--cCCCCeEEEEEeCCCCCCCC
Q 028546           84 VAVIVYDVAN-RQSFLNTSRW-IEEVRTE--RGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        84 ~~ilv~d~~~-~~s~~~~~~~-~~~i~~~--~~~~~p~ivv~nK~D~~~~~  130 (207)
                      ++|||+|.+. ...+..+.++ +..+...  ....+|++++.||.|+..+.
T Consensus        78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            9999999974 3344444333 3333222  23679999999999986543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK09866 hypothetical protein; Provisional

Probab=99.60  E-value=7.4e-14  Score=115.20  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=73.6

Q ss_pred             EEEEEEecCChhhh-----ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERF-----RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV  132 (207)
Q Consensus        58 ~~~~i~D~~G~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~  132 (207)
                      .++.|+||||.+..     .......+..+|+++||+|++...+... ...+..+.. .++..|+++|+||+|+.+..+-
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCCCCCEEEEEEcccCCCcccc
Confidence            36899999997542     2233446899999999999986433222 122333332 2223699999999998643332


Q ss_pred             CHHHHHHHHHHh-------CCeEEEEecCCCCChHHHHHHHHHH
Q 028546          133 SIEEGDGKAKEF-------GVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       133 ~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      ..+.+..+....       ...+|++||+.|.|++.+++.|...
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            344444443211       2369999999999999999999884

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.59  E-value=1.1e-14  Score=114.84  Aligned_cols=161  Identities=18%  Similarity=0.278  Sum_probs=115.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC--------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF--------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   75 (207)
                      -+|+++.+...|||||++.|+.+.-              +....+..++.+..+...+....+++.++||||+.+|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            5899999999999999999984322              11122455667777766666666899999999999999999


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHH-------HHHhCCe
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGK-------AKEFGVM  147 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~-------~~~~~~~  147 (207)
                      ...+.-+|++++++|+.+.. +...+..+......   ..+.|||+||+|..+++.-. .++.-.+       -++++++
T Consensus        86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~---gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL---GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc---CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            99999999999999999732 22222222333222   46678999999986654321 1111111       2245789


Q ss_pred             EEEEecCCCC----------ChHHHHHHHHHHcCCCc
Q 028546          148 FIETSAKAGF----------NIKPLFRKIAAALPGME  174 (207)
Q Consensus       148 ~~~~s~~~~~----------~i~~~~~~l~~~~~~~~  174 (207)
                      +++.|+..|.          ++..+|+.|+++++.-.
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            9999999875          58999999999998654

>PRK12740 elongation factor G; Reviewed

Probab=99.58  E-value=5.8e-14  Score=120.29  Aligned_cols=107  Identities=20%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             EcCCCCCHHHHHHHHhcCCC------------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccc
Q 028546           15 LGDQSVGKTSIITRFMYDKF------------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (207)
Q Consensus        15 ~G~~~sGKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   76 (207)
                      +|++++|||||+++|+...-                  ..+..++.++......+.+.+  +.+.+|||||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            69999999999999953211                  011123444544445555555  6899999999988888888


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      .++..+|++++|+|++..........| ..+..   .++|+++|+||+|+.
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence            889999999999999876554443322 22322   258999999999975

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.56  E-value=8.2e-14  Score=106.61  Aligned_cols=148  Identities=24%  Similarity=0.333  Sum_probs=108.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCccccccceeeeEEEEEEC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF---------------------------------DTTYQATIGIDFLSKTMYLE   54 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   54 (207)
                      ..++.+-+|...-||||||-+|+.+.-                                 ..++..+.++++..+.|  .
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF--s   82 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF--S   82 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--c
Confidence            358999999999999999999983321                                 11122344455555554  4


Q ss_pred             CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028546           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI  134 (207)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~  134 (207)
                      ...-+|.+-||||+++|....-.-...||++|+++|+-  .....+.+....+....+ -..++|.+||+||.+..+-.+
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F  159 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF  159 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence            44468999999999999888877778899999999996  445555555555655554 367999999999998766555


Q ss_pred             HHH----HHHHHHhCC---eEEEEecCCCCChH
Q 028546          135 EEG----DGKAKEFGV---MFIETSAKAGFNIK  160 (207)
Q Consensus       135 ~~~----~~~~~~~~~---~~~~~s~~~~~~i~  160 (207)
                      +.+    ..++.++++   .++++||+.|+|+-
T Consensus       160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            444    455666664   68999999999864

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=2e-13  Score=97.63  Aligned_cols=155  Identities=23%  Similarity=0.301  Sum_probs=102.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc---cCCEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVAV   86 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i   86 (207)
                      -.|+++|+.+||||+|+-+|..+.+..+.   +.+..........+.  .++++|.||+.+.+.....++.   .+-++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            56899999999999999999988654332   222222333333332  4899999999999988877777   799999


Q ss_pred             EEEECCC-hHHHHH-HHHHHHHHHHh--cCCCCeEEEEEeCCCCCCCCCCC--HHHH----------HH-----------
Q 028546           87 IVYDVAN-RQSFLN-TSRWIEEVRTE--RGGDVIIVLVGNKTDLVDKRQVS--IEEG----------DG-----------  139 (207)
Q Consensus        87 lv~d~~~-~~s~~~-~~~~~~~i~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~----------~~-----------  139 (207)
                      ||+|... .....+ ...+|..+...  ....+|++++-||.|+.-+....  .+..          +.           
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999963 122233 33344444444  24578899999999986432110  0000          00           


Q ss_pred             ---------------HHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          140 ---------------KAKEFGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       140 ---------------~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                                     ........|.++|++++ +++++.+||.+.+
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                           00001245889999999 9999999998753

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.54  E-value=3e-13  Score=102.52  Aligned_cols=165  Identities=21%  Similarity=0.333  Sum_probs=121.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE--EECCeEEEEEEEecCChhhhccccccccccC----C
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERFRSLIPSYIRDS----S   83 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~----d   83 (207)
                      -+|+|+|..|+||||||.+|-+..   ...+..+..+..-.+  ..++...++.+|-..|...+..+....+...    .
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            579999999999999999998876   334455544433332  2233345788888888777776666554433    4


Q ss_pred             EEEEEEECCChHHHHH-HHHHHHHHHHh----------------------------------------------------
Q 028546           84 VAVIVYDVANRQSFLN-TSRWIEEVRTE----------------------------------------------------  110 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~-~~~~~~~i~~~----------------------------------------------------  110 (207)
                      ++||+.|+++++++-. +++|...+++.                                                    
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            8899999999966544 78888776553                                                    


Q ss_pred             ---------cCCCCeEEEEEeCCCCCCC-------C----CCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          111 ---------RGGDVIIVLVGNKTDLVDK-------R----QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       111 ---------~~~~~p~ivv~nK~D~~~~-------~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                               .+-.+|++||.+|+|...-       +    ......+++++..+|...|++|.++..|++-+..+|.+..
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                     1236889999999997421       1    1223456788888999999999999999999999999998


Q ss_pred             CCCccCc
Q 028546          171 PGMETLS  177 (207)
Q Consensus       171 ~~~~~~~  177 (207)
                      ....-..
T Consensus       290 yG~~ftt  296 (473)
T KOG3905|consen  290 YGFPFTT  296 (473)
T ss_pred             cCcccCC
Confidence            7764433

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.7e-13  Score=110.83  Aligned_cols=154  Identities=29%  Similarity=0.388  Sum_probs=105.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC--------------------C--C-------CCccccccceeeeEEEEEECCeEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD--------------------K--F-------DTTYQATIGIDFLSKTMYLEDRTV   58 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~--------------------~--~-------~~~~~~~~~~~~~~~~~~~~~~~~   58 (207)
                      ..++.+|+|+..+|||||+.+++..                    +  |       .....+..++.....+..++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            3589999999999999999998721                    0  1       111123334444455555556667


Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCCh---HHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR---QSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS  133 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (207)
                      .++++|+||+.+|-.....-+..+|++|||+|++..   ..|+.  ..+.+..+.+..+ -...+|++||+|+.+..+-.
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~R  334 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQDR  334 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHHH
Confidence            899999999888888777778899999999999852   12221  2223333443444 35589999999999887766


Q ss_pred             HHHHHHHHHHh----------CCeEEEEecCCCCChHHH
Q 028546          134 IEEGDGKAKEF----------GVMFIETSAKAGFNIKPL  162 (207)
Q Consensus       134 ~~~~~~~~~~~----------~~~~~~~s~~~~~~i~~~  162 (207)
                      ++++......+          .+.|++||+..|+|+-..
T Consensus       335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            66665443322          347999999999996544

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.51  E-value=6.6e-13  Score=101.85  Aligned_cols=126  Identities=13%  Similarity=0.162  Sum_probs=75.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------ccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPS   77 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~   77 (207)
                      ....++|+++|.+|+||||++|++++....... ....+...........+  .++.++||||..+....       ...
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            456799999999999999999999988753221 12222222222333344  58999999996643221       111


Q ss_pred             cc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCC
Q 028546           78 YI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVS  133 (207)
Q Consensus        78 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~  133 (207)
                      ++  ...|+++||..++.....+.-...++.+...++.  -.+++|++|+.|..++....
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            11  2689999996654211111112233334433331  24589999999977554444

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.50  E-value=6.6e-13  Score=100.21  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---c-------c
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L-------I   75 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~-------~   75 (207)
                      ..+++|+|+|.+|+|||||+|++++....... ....+..........++  .++.+|||||......   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            45699999999999999999999998753322 22233333333333444  5789999999654311   0       1


Q ss_pred             ccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCC
Q 028546           76 PSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        76 ~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~  131 (207)
                      ..++.  ..|+++||..++....-..-...++.+...++.  -.++++|+||+|...+..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            22332  578888887665421111112344444443331  146999999999865443

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.50  E-value=8.4e-13  Score=115.70  Aligned_cols=144  Identities=23%  Similarity=0.251  Sum_probs=96.5

Q ss_pred             CHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE----------------EEEEEEecCChhhhccccccccccCCE
Q 028546           21 GKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus        21 GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +||||+.++.+..+......+.|.++--..+..+...                ..+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            5999999999888865545555444443334333210                138999999999998877777888999


Q ss_pred             EEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----------------HHHHH----HH-
Q 028546           85 AVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS----------------IEEGD----GK-  140 (207)
Q Consensus        85 ~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~-  140 (207)
                      +++|+|+++   +++++.+.    .+...   ++|+++++||+|+.......                ..+..    .. 
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999986   34444332    22222   58999999999986432210                00000    00 


Q ss_pred             --HHH-------------h--CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          141 --AKE-------------F--GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       141 --~~~-------------~--~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                        ...             +  ..+++++||.+|+|+++++.+|..+.+
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence              011             1  347999999999999999998876544

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=1.1e-13  Score=119.12  Aligned_cols=115  Identities=20%  Similarity=0.194  Sum_probs=78.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC---------------CCC-Cccccccceeee--EEEEEECCeEEEEEEEecCChhh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD---------------KFD-TTYQATIGIDFL--SKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~---------------~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      -.+|+++|+.++|||||+++|+..               .+. .+..+..++...  .....+++..+.+.+|||||+.+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            479999999999999999999742               111 111122222221  22223455668999999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      |.......+..+|++|+|+|+.+....+...-| ..+..   .+.|+++++||+|..
T Consensus        99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH---cCCCEEEEEEChhcc
Confidence            888888889999999999999864322222222 22222   246788999999975

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.49  E-value=1.8e-13  Score=89.62  Aligned_cols=137  Identities=21%  Similarity=0.291  Sum_probs=97.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----hhhhccccccccccCCEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i   86 (207)
                      ||+++|..|+|||||.+.+.+...  -+..+..++       +++.    -.+||||    +..+.+.+......+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999998764  222333332       2221    2459998    3344444555667899999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|-+++++++.-.     ..+....  ..|+|=+++|+|+.++.+  ....+.+..+-|. ++|.+|+.++.|++++++.
T Consensus        70 ~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccCC-----ccccccc--ccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999998754211     1111111  355999999999976444  4556777777787 7999999999999999999


Q ss_pred             HHHH
Q 028546          166 IAAA  169 (207)
Q Consensus       166 l~~~  169 (207)
                      |...
T Consensus       141 L~~~  144 (148)
T COG4917         141 LASL  144 (148)
T ss_pred             HHhh
Confidence            8754

>TIGR00101 ureG urease accessory protein UreG

Probab=99.48  E-value=1.1e-12  Score=96.08  Aligned_cols=103  Identities=18%  Similarity=0.136  Sum_probs=66.6

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG  137 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (207)
                      ....++++.|..-...... .  -+|.+|.|+|+.+.+....  .+..++.      ..=++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            4677788888432222221 1  2688999999987555321  1112221      11289999999975433334444


Q ss_pred             HHHHHH--hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          138 DGKAKE--FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       138 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ....+.  .+.+++++|+++|.|+++++++|.+.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            444444  3568999999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.48  E-value=3.8e-12  Score=103.51  Aligned_cols=168  Identities=21%  Similarity=0.347  Sum_probs=121.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC--CeEEEEEEEecCChhhhcccccccccc--
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD--   81 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~--   81 (207)
                      .+..-.|+|+|..++||||||.+|.+..   .+.++.+.++....+.-+  +...++.+|-..|...+..++...+..  
T Consensus        22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~   98 (472)
T PF05783_consen   22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN   98 (472)
T ss_pred             CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence            3456799999999999999999987653   334555665555443322  223478999998877777777666553  


Q ss_pred             --CCEEEEEEECCChHHHHH-HHHHHHHHHHh------------------------------------------------
Q 028546           82 --SSVAVIVYDVANRQSFLN-TSRWIEEVRTE------------------------------------------------  110 (207)
Q Consensus        82 --~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~------------------------------------------------  110 (207)
                        --++|+|.|.+.|+.+-. +..|+..++..                                                
T Consensus        99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~  178 (472)
T PF05783_consen   99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD  178 (472)
T ss_pred             ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence              248899999999987654 67777665442                                                


Q ss_pred             --------------cCCCCeEEEEEeCCCCCCCC-------C----CCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546          111 --------------RGGDVIIVLVGNKTDLVDKR-------Q----VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus       111 --------------~~~~~p~ivv~nK~D~~~~~-------~----~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                                    .+-.+|++||.+|.|..+..       +    .....++.++..+|+.+|++|.+...+++-++.+
T Consensus       179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~y  258 (472)
T PF05783_consen  179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKY  258 (472)
T ss_pred             cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHH
Confidence                          00147999999999964311       1    2234457778889999999999999999999999


Q ss_pred             HHHHcCCCccC
Q 028546          166 IAAALPGMETL  176 (207)
Q Consensus       166 l~~~~~~~~~~  176 (207)
                      |.+.+....-.
T Consensus       259 i~h~l~~~~f~  269 (472)
T PF05783_consen  259 ILHRLYGFPFK  269 (472)
T ss_pred             HHHHhccCCCC
Confidence            99998766543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.48  E-value=2.4e-13  Score=100.67  Aligned_cols=162  Identities=12%  Similarity=0.109  Sum_probs=96.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccc--cccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------c----c
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------I----P   76 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~----~   76 (207)
                      ++|+++|..|+||||++|.+++........  ...+..+......+++  ..+.|+||||..+....       +    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999888754432  2233344444456677  57899999994332111       1    1


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCC-------HHHHHHHHHHhCCe
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVS-------IEEGDGKAKEFGVM  147 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  147 (207)
                      ....+.|++|||+.+.+...  .....+..+...++.  -..++||++..|...+..+.       ......+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~t~--~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRFTE--EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB-SH--HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcchH--HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            12457899999999984221  122233333333331  13488888988865554421       12234455556777


Q ss_pred             EEEEecC------CCCChHHHHHHHHHHcCCCcc
Q 028546          148 FIETSAK------AGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       148 ~~~~s~~------~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      +...+..      ....+.++++.+-+++.+...
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            8777776      334688888888888776653

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00258 GTP-binding protein; Provisional

Probab=99.48  E-value=1.2e-12  Score=104.06  Aligned_cols=84  Identities=19%  Similarity=0.186  Sum_probs=63.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE---------------EEEEEEecCChhh---
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER---   70 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---   70 (207)
                      -++|.++|.|++|||||+|+|.+........+.++++.....+.+.+..               .++.++|+||...   
T Consensus        21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~  100 (390)
T PTZ00258         21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS  100 (390)
T ss_pred             CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence            3799999999999999999999888766666888877777766655322               2589999999542   


Q ss_pred             ----hccccccccccCCEEEEEEECC
Q 028546           71 ----FRSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        71 ----~~~~~~~~~~~~d~~ilv~d~~   92 (207)
                          ........++++|++++|+|+.
T Consensus       101 ~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        101 EGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                1112233468899999999983

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.48  E-value=1.8e-13  Score=103.27  Aligned_cols=99  Identities=22%  Similarity=0.273  Sum_probs=79.8

Q ss_pred             hhhccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q 028546           69 ERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM  147 (207)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (207)
                      +++..+.+.++.++|++++|+|+.++. +++.+.+|+..+..   .++|+++|+||+|+.++.+...+....+ ..++++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence            567788888999999999999999877 89999999986654   3689999999999976544433334433 357889


Q ss_pred             EEEEecCCCCChHHHHHHHHHHcC
Q 028546          148 FIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ++++|+++|.|++++|+.+...+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~~~  123 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNRIS  123 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCCEE
Confidence            999999999999999999876443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.48  E-value=6.1e-13  Score=114.72  Aligned_cols=114  Identities=20%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC--C--------------CccccccceeeeEEEE--EECCeEEEEEEEecCChhhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF--D--------------TTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~~~~   71 (207)
                      .+|+++|+.++|||||+.+|+...-  .              .+..+..+++.....+  ..++..+.+.++||||+.+|
T Consensus        21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df  100 (731)
T PRK07560         21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF  100 (731)
T ss_pred             cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence            5799999999999999999974211  0              0111222222222222  22444578999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      .......+..+|++|+|+|+..+-..+...-|.. ....   +.|+++++||+|..
T Consensus       101 ~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560        101 GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHc---CCCeEEEEECchhh
Confidence            8888888999999999999986533333222222 2222   36789999999975

>cd00066 G-alpha G protein alpha subunit

Probab=99.45  E-value=3.8e-12  Score=99.62  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=79.9

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR----------QSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTD  125 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D  125 (207)
                      .+.+.+||++|+...+..|..++.+++++|||+|+++.          ..+......+..+... .-.++|++|++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            36899999999999999999999999999999999973          3444444444444332 225799999999999


Q ss_pred             CCCCC----------------CCCHHHHHHHHHH----------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          126 LVDKR----------------QVSIEEGDGKAKE----------FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       126 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      +..+.                ....+.+..+...          ..+-...++|.+..+++.+|+.+.+.+.
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~  311 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL  311 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence            64321                1122333222221          1233567788888888888888887764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK13768 GTPase; Provisional

Probab=99.45  E-value=9.6e-13  Score=99.86  Aligned_cols=116  Identities=23%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             EEEEEecCChhhhc---cccccccc---c--CCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           59 RLQLWDTAGQERFR---SLIPSYIR---D--SSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        59 ~~~i~D~~G~~~~~---~~~~~~~~---~--~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      .+.+||+||+.+..   ..+..+++   .  ++++++|+|+........ ...++.........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            68999999976633   33322322   2  899999999965332222 112211111111126899999999998755


Q ss_pred             CCCCH--HHHH------------------------HHHHHhC--CeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546          130 RQVSI--EEGD------------------------GKAKEFG--VMFIETSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       130 ~~~~~--~~~~------------------------~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      .+...  ....                        ...+..+  .+++++|+.++.|++++.++|.+.+..-+
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~  250 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE  250 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence            33211  0000                        1122334  57899999999999999999999887544

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.43  E-value=1.7e-12  Score=101.33  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=68.1

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CH
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SI  134 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~  134 (207)
                      .+.+.|+||+|.......   ....+|.++++.+...++.+..++.-   +.+     ..-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~g---i~E-----~aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKKG---IME-----LADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHhh---hhh-----hhheEEeehhcccchhHHHHHH
Confidence            468999999996532222   46789999999875555555444321   111     113899999998643321  11


Q ss_pred             HHHHHHHHH-------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          135 EEGDGKAKE-------FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      .+.......       +..+++.+|+.++.|++++++.|.+++.
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            122222221       2368999999999999999999999865

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.42  E-value=9.7e-13  Score=114.86  Aligned_cols=116  Identities=18%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEEC--------------CeE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLE--------------DRT   57 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------------~~~   57 (207)
                      +-.+|+|+|+.++|||||+++|+...-                ..+..+..++......+.+.              +..
T Consensus        18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (843)
T PLN00116         18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE   97 (843)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence            347999999999999999999974321                11112233333222223221              235


Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      +.++++||||+.+|.......+..+|++|+|+|+.++-......-|.. +...   ++|+++++||+|..
T Consensus        98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~~---~~p~i~~iNK~D~~  163 (843)
T PLN00116         98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALGE---RIRPVLTVNKMDRC  163 (843)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHHC---CCCEEEEEECCccc
Confidence            688999999999999988888899999999999997544343333333 3222   58999999999975

>PTZ00416 elongation factor 2; Provisional

Probab=99.42  E-value=9.2e-13  Score=114.81  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=79.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCccccccceeeeEEEEEEC--------CeEEEEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DTTYQATIGIDFLSKTMYLE--------DRTVRLQLW   63 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~   63 (207)
                      +-.+|+++|+.++|||||+++|+...-                ..+..+..+++.....+.+.        +..+.+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            346999999999999999999985211                11112222333222233333        224679999


Q ss_pred             ecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           64 DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        64 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ||||+.+|.......+..+|++|+|+|+.++-..... ..+..+...   ++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHHc---CCCEEEEEEChhhh
Confidence            9999999988888889999999999999875333322 223333322   58999999999985

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.42  E-value=1.1e-11  Score=97.62  Aligned_cols=83  Identities=17%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE---------------EEEEEEecCChhhh---
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERF---   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~---   71 (207)
                      ++|.++|.|++|||||+|++++........+.++++.....+.+.+..               .++.++|+||...-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999988655556777777776666665521               25899999995321   


Q ss_pred             ----ccccccccccCCEEEEEEECC
Q 028546           72 ----RSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        72 ----~~~~~~~~~~~d~~ilv~d~~   92 (207)
                          .......++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                112233468999999999984

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.42  E-value=1e-12  Score=104.78  Aligned_cols=161  Identities=16%  Similarity=0.099  Sum_probs=117.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccc-------
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-------   78 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-------   78 (207)
                      .+..-.++++|-|++|||||++.+........+.++++.......+.+.-  ..++++||||.-+....-...       
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence            45567899999999999999999998888777677777666666654443  689999999954322111111       


Q ss_pred             --cccCCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH---HHHHHHhCCeEEEE
Q 028546           79 --IRDSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG---DGKAKEFGVMFIET  151 (207)
Q Consensus        79 --~~~~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~---~~~~~~~~~~~~~~  151 (207)
                        ..--.+|+|+.|++.  +.+...+..+|..|...+. +.|+|+|+||+|+.....+..+..   ......-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence              111247888999874  6688888999999988887 689999999999987777665443   33333445899999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q 028546          152 SAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~  169 (207)
                      |..+.+|+-++-...-+.
T Consensus       322 S~~~eegVm~Vrt~ACe~  339 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEA  339 (620)
T ss_pred             cccchhceeeHHHHHHHH
Confidence            999999987765544443

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1e-11  Score=95.09  Aligned_cols=166  Identities=22%  Similarity=0.237  Sum_probs=102.5

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhc-------CCCCCccccccceeeeEEEEEE-------CCeEEEEEEEecC
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMY-------DKFDTTYQATIGIDFLSKTMYL-------EDRTVRLQLWDTA   66 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~   66 (207)
                      |.+++.  .+++.++|+..||||||..++-.       +.-+++..+..+.+.-...+.+       .+...+++++|||
T Consensus         1 m~~~p~--n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCP   78 (522)
T KOG0461|consen    1 MTSPPS--NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCP   78 (522)
T ss_pred             CCCCCc--eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCC
Confidence            444444  39999999999999999999852       2223333444444544444433       2345789999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHH-HHH-
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDG-KAK-  142 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-~~~-  142 (207)
                      |+...-..+.....-.|..++|+|+..+-.-+...-++  +.+..  ....+||+||+|...+....  .+.... ..+ 
T Consensus        79 GHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   79 GHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             CcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            98665554444445568899999998533222221111  11121  23368889999976543221  111111 111 


Q ss_pred             --Hh----CCeEEEEecCCC----CChHHHHHHHHHHcCC
Q 028546          143 --EF----GVMFIETSAKAG----FNIKPLFRKIAAALPG  172 (207)
Q Consensus       143 --~~----~~~~~~~s~~~~----~~i~~~~~~l~~~~~~  172 (207)
                        ..    +.+++++|+..|    +++.++.+.|.+.+-+
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence              11    368999999999    7888888888877653

>smart00275 G_alpha G protein alpha subunit

Probab=99.40  E-value=1.5e-11  Score=97.15  Aligned_cols=120  Identities=15%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             EEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCeEE
Q 028546           50 TMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR----------QSFLNTSRWIEEVRTE-RGGDVIIV  118 (207)
Q Consensus        50 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~i  118 (207)
                      .+.+++  ..+.+||++|+...+..|..++.+++++|||+|+++.          ..+......+..+... .-.++|++
T Consensus       178 ~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pii  255 (342)
T smart00275      178 AFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSII  255 (342)
T ss_pred             EEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEE
Confidence            344444  5789999999999999999999999999999999963          2455544455554432 22579999


Q ss_pred             EEEeCCCCCCCC--------------C-CCHHHHHHHHHH-----h------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          119 LVGNKTDLVDKR--------------Q-VSIEEGDGKAKE-----F------GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       119 vv~nK~D~~~~~--------------~-~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      |++||.|+..+.              . ...+.+..+...     .      .+-++.++|.+-.++..+|+.+.+.+.
T Consensus       256 l~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~  334 (342)
T smart00275      256 LFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL  334 (342)
T ss_pred             EEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence            999999974321              0 122222222211     1      123467788888888888888777664

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.40  E-value=1.2e-11  Score=100.37  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=120.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +=++..|+|+.++|||.|++.|+++.+...+..+....+....+...+....+.+.|.+-. ...-....- ..+|++++
T Consensus       424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~  501 (625)
T KOG1707|consen  424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL  501 (625)
T ss_pred             eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence            3388999999999999999999999998766677777777777777777778888887753 222222111 68999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~l  166 (207)
                      +||.+++.+|+.+...++.....  ...|+++|++|+|+-+..+.....-..++++++++ .+..|...... .++|..|
T Consensus       502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL  578 (625)
T KOG1707|consen  502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL  578 (625)
T ss_pred             ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence            99999999999998877776555  46999999999999655433332337788888884 46666664223 7999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      ..+...
T Consensus       579 ~~~A~~  584 (625)
T KOG1707|consen  579 ATMAQY  584 (625)
T ss_pred             HHhhhC
Confidence            987653

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.39  E-value=1.4e-12  Score=92.56  Aligned_cols=150  Identities=22%  Similarity=0.161  Sum_probs=91.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeE-------------EEEEE----------------------C
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLS-------------KTMYL----------------------E   54 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~-------------~~~~~----------------------~   54 (207)
                      +.|.|.|++|||||+|+.+++..--........+.++..             +.+.+                      +
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~   93 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD   93 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence            799999999999999999876432211111111111111             00000                      0


Q ss_pred             CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028546           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI  134 (207)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~  134 (207)
                      .....+.|++.+|  . ....-.+--..+.-|+|+|++.++-..  .+-...+..      -=++|+||.|+.+....+.
T Consensus        94 ~~~~Dll~iEs~G--N-L~~~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~~------aDllVInK~DLa~~v~~dl  162 (202)
T COG0378          94 FPDLDLLFIESVG--N-LVCPFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIFK------ADLLVINKTDLAPYVGADL  162 (202)
T ss_pred             CCcCCEEEEecCc--c-eecccCcchhhceEEEEEECCCCCCCc--ccCCCceeE------eeEEEEehHHhHHHhCccH
Confidence            0113455666555  1 111111112334889999998643111  110111111      1389999999999888888


Q ss_pred             HHHHHHHHHhC--CeEEEEecCCCCChHHHHHHHHHHc
Q 028546          135 EEGDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       135 ~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      +...+.+++.+  .+++++|.++|+|++++++|+....
T Consensus       163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            88888888775  5899999999999999999998754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.38  E-value=1e-11  Score=91.67  Aligned_cols=151  Identities=17%  Similarity=0.240  Sum_probs=84.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc----cccceeeeEEE---E-------------EECCe
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFD------------TTYQ----ATIGIDFLSKT---M-------------YLEDR   56 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~------------~~~~----~~~~~~~~~~~---~-------------~~~~~   56 (207)
                      -..|.++|+.|+|||||+++++.....            ...+    ...+.....-.   +             .....
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~  101 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD  101 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence            467899999999999999998743110            0000    00000000000   0             00001


Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE  136 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  136 (207)
                      ...+.++++.|.-...   ..+....+..+.|+|+.+.+.  .+... ....     ..|.++++||+|+.+........
T Consensus       102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--~~~~~-~~~~-----~~a~iiv~NK~Dl~~~~~~~~~~  170 (207)
T TIGR00073       102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--KPLKY-PGMF-----KEADLIVINKADLAEAVGFDVEK  170 (207)
T ss_pred             CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--hhhhh-HhHH-----hhCCEEEEEHHHccccchhhHHH
Confidence            2367778887721000   111124566677888875332  11111 1111     35679999999996543323333


Q ss_pred             HHHHHHHhC--CeEEEEecCCCCChHHHHHHHHHHc
Q 028546          137 GDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       137 ~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      .....+..+  .+++++|+++|.|++++++++.++.
T Consensus       171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            444444443  7899999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01882 BMS1 Bms1

Probab=99.38  E-value=1e-11  Score=92.74  Aligned_cols=139  Identities=13%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+...|+++|++|+|||||++.+.+..-........+. +   ++ ......++.++||||.-  .. ....+..+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            34578999999999999999999865221111111111 1   11 11233578999999853  22 233468899999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHH-HHHH--hCCeEEEEecCCCC
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVSI---EEGDG-KAKE--FGVMFIETSAKAGF  157 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~-~~~~--~~~~~~~~s~~~~~  157 (207)
                      +|+|++....... ...+..+...   ..| +++|+||+|+.++.....   ..++. +...  .+.+++++|++++-
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            9999985433222 2233333322   356 456999999864322111   11111 2211  23589999998874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.38  E-value=7.6e-12  Score=98.48  Aligned_cols=159  Identities=17%  Similarity=0.184  Sum_probs=79.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccc---eeeeEEEEEECCeEEEEEEEecCChhhhccccccc-----c
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG---IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I   79 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~   79 (207)
                      .+++|+|+|.+|+|||||||+|.|-...+.....++   ++...... ..-...++.+||.||..-..-....|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY-PHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            468999999999999999999986443322221111   11111111 11222369999999954322222222     4


Q ss_pred             ccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCC-------CCCCCC----HHHHHHHHHH----
Q 028546           80 RDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLV-------DKRQVS----IEEGDGKAKE----  143 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~-------~~~~~~----~~~~~~~~~~----  143 (207)
                      ..-|.+|++.+-.    |... ..+...+...   ++|+++|-+|+|.-       .++...    .+.++..+..    
T Consensus       113 ~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            5678877776543    2221 2223334333   58899999999951       111222    2222222222    


Q ss_pred             hC---CeEEEEecCCCC--ChHHHHHHHHHHcCCCc
Q 028546          144 FG---VMFIETSAKAGF--NIKPLFRKIAAALPGME  174 (207)
Q Consensus       144 ~~---~~~~~~s~~~~~--~i~~~~~~l~~~~~~~~  174 (207)
                      .+   .++|.+|+.+-.  ++..+.+.|.+.+..++
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            23   369999988754  47778888888877654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.36  E-value=1.8e-12  Score=96.30  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=70.4

Q ss_pred             EEEEEEecCChhhhc------ccc-ccc-cccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           58 VRLQLWDTAGQERFR------SLI-PSY-IRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~------~~~-~~~-~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      ..+.++||||+-.--      +.+ ..+ -...-+++||+|..+   +.+|-.=.-+--.+..+  -..|+|++.||+|+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDV  193 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccc
Confidence            468999999975421      111 111 123457888998864   44443322222223333  36999999999998


Q ss_pred             CCCC---------CCCHHHHHH--------HHH--------H-hCCeEEEEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546          127 VDKR---------QVSIEEGDG--------KAK--------E-FGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       127 ~~~~---------~~~~~~~~~--------~~~--------~-~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~  177 (207)
                      .+..         +...+.+..        +.+        . .++..+-+|+.+|.|.+++|..+.+.+.+....+
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~y  270 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEY  270 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHh
Confidence            6531         110111110        000        0 1467999999999999999999998877664433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.34  E-value=3.6e-13  Score=100.99  Aligned_cols=110  Identities=25%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             EEEEEecCChhhhcccccccc--------ccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      .+.++|||||-++...+...-        ...-++++++|...   +..|-.  .++..+.....-..|.+.|+||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            689999999988766554432        34568899999863   333322  22222221111259999999999997


Q ss_pred             CCCC-------CC------------HHHHHHHHHH---hC-C-eEEEEecCCCCChHHHHHHHHHHc
Q 028546          128 DKRQ-------VS------------IEEGDGKAKE---FG-V-MFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       128 ~~~~-------~~------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      ++..       ..            ....+..+.-   ++ . .++++|+.+++++.+++..+-+.+
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            6220       00            0001111111   12 3 699999999999999999887754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.33  E-value=1.7e-11  Score=94.17  Aligned_cols=142  Identities=12%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccccceeeeEEEEEECCeEEEEEEEecCChhhh-------
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------   71 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------   71 (207)
                      .++|+|+|..|+|||||+|.|++.......          .++..+......+..++..+++.|+||||..+.       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999976653321          122233333344556777889999999993211       


Q ss_pred             -----------cccc---------ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           72 -----------RSLI---------PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        72 -----------~~~~---------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                                 ....         ...=..+|+++|.++.+...--..-...++.+..    .+++|-|+.|.|.....+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~----~vNvIPvIaKaD~lt~~e  159 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK----RVNVIPVIAKADTLTPEE  159 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT----TSEEEEEESTGGGS-HHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc----cccEEeEEecccccCHHH
Confidence                       0000         0011357899999998752111111233344433    488999999999865544


Q ss_pred             CC--HHHHHHHHHHhCCeEEEEecC
Q 028546          132 VS--IEEGDGKAKEFGVMFIETSAK  154 (207)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~~s~~  154 (207)
                      +.  ...+.......++++|.....
T Consensus       160 l~~~k~~i~~~l~~~~I~~f~f~~~  184 (281)
T PF00735_consen  160 LQAFKQRIREDLEENNIKIFDFPED  184 (281)
T ss_dssp             HHHHHHHHHHHHHHTT--S------
T ss_pred             HHHHHHHHHHHHHHcCceeeccccc
Confidence            32  333445555677777664433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.33  E-value=9.9e-11  Score=92.49  Aligned_cols=159  Identities=16%  Similarity=0.201  Sum_probs=96.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC----CCC------------Cccccc---cceeeeE---EEEE---ECCeEEEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD----KFD------------TTYQAT---IGIDFLS---KTMY---LEDRTVRLQL   62 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~~i   62 (207)
                      .++.|.|||+.++|||||+++|.+.    ...            ....++   ++++...   ..+.   .++...++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4589999999999999999999877    322            111223   2222222   2222   2344568999


Q ss_pred             EecCChhhhcc-------c----------------------cccccc-cCCEEEEEE-ECC-----ChHHHHHHHHHHHH
Q 028546           63 WDTAGQERFRS-------L----------------------IPSYIR-DSSVAVIVY-DVA-----NRQSFLNTSRWIEE  106 (207)
Q Consensus        63 ~D~~G~~~~~~-------~----------------------~~~~~~-~~d~~ilv~-d~~-----~~~s~~~~~~~~~~  106 (207)
                      +||+|...-..       .                      +...+. ++|+.|+|. |.+     +..-.+.-.+++..
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99999332110       0                      222345 899999998 774     11222334556666


Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC--CCCChHHHHHHHHHHcC
Q 028546          107 VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK--AGFNIKPLFRKIAAALP  171 (207)
Q Consensus       107 i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~i~~~~~~l~~~~~  171 (207)
                      +...   ++|+++++|+.|-..+.  .......+...++.+++.+|..  +...+..+++.++-.++
T Consensus       176 Lk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       176 LKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP  237 (492)
T ss_pred             HHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence            6555   69999999999942221  2333345566788887777654  44456666666555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01900 YchF YchF subfamily

Probab=99.33  E-value=2.1e-11  Score=92.96  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE---------------EEEEEEecCChhhh-----
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERF-----   71 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~-----   71 (207)
                      |+++|.|++|||||+|++++........+.++++.....+.+.+..               ..+.++|+||...-     
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999988866666777777777776665531               25899999994321     


Q ss_pred             --ccccccccccCCEEEEEEECC
Q 028546           72 --RSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        72 --~~~~~~~~~~~d~~ilv~d~~   92 (207)
                        .......++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence              112233467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.1e-11  Score=94.11  Aligned_cols=163  Identities=20%  Similarity=0.167  Sum_probs=106.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEE------------------EEC------CeEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTM------------------YLE------DRTVR   59 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~------------------~~~------~~~~~   59 (207)
                      ..+++|.++|+...|||||..+|.+--.   +++..+..++..-....                  .+.      .-.-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            4679999999999999999999975322   22222222211111000                  000      12236


Q ss_pred             EEEEecCChhhhccccccccccCCEEEEEEECCCh----HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028546           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR----QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S  133 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~  133 (207)
                      +.|+|+||++-+-.....-..-.|+++||++++.+    ++-+.+.    .+. ..+ -..++++=||+|+.+..+.  .
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~----Ale-Iig-ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM----ALE-IIG-IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH----HHh-hhc-cceEEEEecccceecHHHHHHH
Confidence            89999999886544443334457999999999973    3333332    121 111 2558999999999755332  3


Q ss_pred             HHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546          134 IEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       134 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      ++++.+|.+-   .+.+++++||..+.|++-++++|.+.+..-..
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r  206 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER  206 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence            4555656553   26799999999999999999999999975443

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.2e-11  Score=102.68  Aligned_cols=161  Identities=19%  Similarity=0.137  Sum_probs=104.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC----------------CeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~   70 (207)
                      ....=++|+|+..+|||-|+..+.+..+......+.+-.+....+...                -...-+.++||||++.
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            334568999999999999999999877765543333222111112111                1122588999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC------------------
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV------------------  132 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------------------  132 (207)
                      |..+.......||++|+|+|+-.+-.-+++    +.+......+.|+||.+||+|-.=.+..                  
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqti----ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~  628 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTI----ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ  628 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchh----HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence            999888888899999999999853222222    2222233347999999999995311110                  


Q ss_pred             ------CHHHHHHHHHH-h-------------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          133 ------SIEEGDGKAKE-F-------------GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       133 ------~~~~~~~~~~~-~-------------~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                            ....+..|+.+ +             .+.++++||.+|+||-+|+-+|++..+
T Consensus       629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence                  00111111111 0             124789999999999999999998754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.31  E-value=2.7e-11  Score=86.41  Aligned_cols=63  Identities=19%  Similarity=0.262  Sum_probs=43.4

Q ss_pred             EEEEEecCChhh----hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546           59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT  124 (207)
Q Consensus        59 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  124 (207)
                      .+.|+|+||...    ....+..++..+|++|+|.+++...+-.....+.+.....   ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            489999999643    3356777889999999999999755444444444444333   23489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.29  E-value=7.4e-11  Score=79.67  Aligned_cols=114  Identities=33%  Similarity=0.391  Sum_probs=81.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999998777753322 2221                           222334566788999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      |+.....+++.+  |...+......+.|.++++||.|+.+.......        ....++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~--------~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATE--------EGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHH--------HHHHHHHHhCCCcchhh
Confidence            999998888766  777776555567889999999998443333222        22345677888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.27  E-value=7.5e-11  Score=91.80  Aligned_cols=104  Identities=16%  Similarity=0.098  Sum_probs=66.0

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE  136 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  136 (207)
                      .+.+.|+||+|....   ....+..+|.++++......   +.+......+.     .+|.++++||+|+..........
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence            478999999985422   22356778988888655433   33333333332     36789999999986543211100


Q ss_pred             ------HHHHHH---HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          137 ------GDGKAK---EFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       137 ------~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                            ...+..   .+..+++++|++++.|+++++++|.+...
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                  011111   12346999999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=5.8e-11  Score=93.74  Aligned_cols=155  Identities=19%  Similarity=0.118  Sum_probs=110.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC---CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF---DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      -|+-.|+--.|||||+..+.+..-   ++...++.+++.........+  +.+.|+|.||.+++-......+...|..+|
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            467789999999999999986544   455567777777666666555  489999999999988877777788999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEEecCCCCChHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE---FGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |+|++++-..+..  ....+.+..+ ....++|++|+|..++..+. +..+.....   -+.++|.+|+.+|.|++++.+
T Consensus        80 vV~~deGl~~qtg--EhL~iLdllg-i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMAQTG--EHLLILDLLG-IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcchhhH--HHHHHHHhcC-CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            9999753222221  1112233333 23469999999987654322 122222222   245789999999999999999


Q ss_pred             HHHHHcC
Q 028546          165 KIAAALP  171 (207)
Q Consensus       165 ~l~~~~~  171 (207)
                      .|..+..
T Consensus       156 ~l~~L~~  162 (447)
T COG3276         156 ELIDLLE  162 (447)
T ss_pred             HHHHhhh
Confidence            9999985

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.8e-10  Score=87.93  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=65.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC----------------eEEEEEEEecCChh---
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQE---   69 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~---   69 (207)
                      .+++.+||.|++|||||+|+++.........|..|++.......+.+                ....+.|+|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            37899999999999999999999887667788888887777665532                13468999999832   


Q ss_pred             ----hhccccccccccCCEEEEEEECC
Q 028546           70 ----RFRSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        70 ----~~~~~~~~~~~~~d~~ilv~d~~   92 (207)
                          .+......-++++|+++.|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                23333444578999999999997

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5e-11  Score=101.08  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=86.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--------------CCC----CccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYD--------------KFD----TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ...-.+|.++|+..+|||||..+++..              .+.    .+..+..++.-...++.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            445589999999999999999999721              111    11123333333334444443 47999999999


Q ss_pred             hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      +-+|.......++-.|++|+|+|+...-..+...-|.+....    ++|.++++||+|..
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~  141 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRL  141 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECcccc
Confidence            999999999999999999999999976555555555555443    59999999999964

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.24  E-value=2.3e-10  Score=95.22  Aligned_cols=119  Identities=13%  Similarity=0.154  Sum_probs=74.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------c----ccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------L----IPS   77 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~----~~~   77 (207)
                      .++|+++|.+|+||||++|++++....... ....+..........++  ..+.|+||||......      .    +..
T Consensus       118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            478999999999999999999988643222 22223333333333444  5799999999654311      1    112


Q ss_pred             ccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCC
Q 028546           78 YIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD--VIIVLVGNKTDLVDK  129 (207)
Q Consensus        78 ~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~  129 (207)
                      ++.  ..|++|||..++.......-..++..+...++..  ..+|||+|+.|..++
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            333  5899999998763222112234555555555421  238999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.21  E-value=1.4e-10  Score=87.62  Aligned_cols=106  Identities=15%  Similarity=0.097  Sum_probs=71.6

Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH-
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI-  134 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~-  134 (207)
                      ..+.+.|++|.|-.+...   ....-+|.+++|.=..-++..+.++.-+..+..        ++|+||.|......... 
T Consensus       142 aG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~~a~r~  210 (323)
T COG1703         142 AGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAEKAARE  210 (323)
T ss_pred             cCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHHHHHHH
Confidence            356788999987433222   234568999998877777777777766666653        89999999543321111 


Q ss_pred             -HHHHHHH------HHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          135 -EEGDGKA------KEFGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       135 -~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                       ..+..+.      ..|..+++.+|+.+|+|++++++.+.++..-
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence             1111111      1245689999999999999999999997653

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.20  E-value=8.9e-10  Score=85.88  Aligned_cols=127  Identities=14%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             ceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHH-------HHHHHHHHHHHHHh----c
Q 028546           43 GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS-------FLNTSRWIEEVRTE----R  111 (207)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-------~~~~~~~~~~i~~~----~  111 (207)
                      +..+....+.+.+  ..+.++|++||..-+..|..++.+++++|||+++++.+.       .+.+.+-+..+...    .
T Consensus       182 T~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~  259 (354)
T KOG0082|consen  182 TTGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW  259 (354)
T ss_pred             cCCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence            3444455555666  679999999999999999999999999999999996322       22233322222222    2


Q ss_pred             CCCCeEEEEEeCCCCCCCCC--------------C-CHHHHHHHHH-H----h-----CCeEEEEecCCCCChHHHHHHH
Q 028546          112 GGDVIIVLVGNKTDLVDKRQ--------------V-SIEEGDGKAK-E----F-----GVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus       112 ~~~~p~ivv~nK~D~~~~~~--------------~-~~~~~~~~~~-~----~-----~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      -.+.++++++||.|+.++..              . ..+++..+.. +    +     .+-+..+.|.+-.+|+.+|+.+
T Consensus       260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av  339 (354)
T KOG0082|consen  260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV  339 (354)
T ss_pred             cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence            25789999999999864311              1 2222222211 1    1     2234567889999999999999


Q ss_pred             HHHcC
Q 028546          167 AAALP  171 (207)
Q Consensus       167 ~~~~~  171 (207)
                      .+.+-
T Consensus       340 ~d~Ii  344 (354)
T KOG0082|consen  340 TDTII  344 (354)
T ss_pred             HHHHH
Confidence            88764

>smart00053 DYNc Dynamin, GTPase

Probab=99.20  E-value=2.5e-10  Score=85.45  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             EEEEEEecCChhh-------------hcccccccccc-CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546           58 VRLQLWDTAGQER-------------FRSLIPSYIRD-SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK  123 (207)
Q Consensus        58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  123 (207)
                      ..++++|+||...             ...+...|+++ .+++++|+|++..-.-....+....+..   ...++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            4799999999642             12245567774 5699999998742222222233333332   25789999999


Q ss_pred             CCCCCC
Q 028546          124 TDLVDK  129 (207)
Q Consensus       124 ~D~~~~  129 (207)
                      .|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            998643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.20  E-value=7.7e-11  Score=85.57  Aligned_cols=148  Identities=22%  Similarity=0.322  Sum_probs=95.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh-----cccccccccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYIRD   81 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~   81 (207)
                      .+-||+++|..|||||++=-.++.+... +...++.++++......+-|. ..+.+||++|++.+     ...-...+.+
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhhee
Confidence            3568999999999999976666644332 345667777777766544443 58999999998843     2244667889


Q ss_pred             CCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHH----HHHHHhCCeEEEEe
Q 028546           82 SSVAVIVYDVANRQ---SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEEGD----GKAKEFGVMFIETS  152 (207)
Q Consensus        82 ~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~----~~~~~~~~~~~~~s  152 (207)
                      ++++++|||++..+   .+..-+..++.+.+..+ ..-+++.+.|+|+.....  .....-.    .......+.++++|
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999998643   22333444444444433 455888899999875433  2222222    22222345677877


Q ss_pred             cCCCC
Q 028546          153 AKAGF  157 (207)
Q Consensus       153 ~~~~~  157 (207)
                      ..+-.
T Consensus       161 iwDet  165 (295)
T KOG3886|consen  161 IWDET  165 (295)
T ss_pred             hhhHH
Confidence            77653

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.19  E-value=1.3e-11  Score=91.71  Aligned_cols=152  Identities=15%  Similarity=0.165  Sum_probs=89.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc------CCC-----CCc-----------ccc----ccceeeeEEEEEECC------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY------DKF-----DTT-----------YQA----TIGIDFLSKTMYLED------   55 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~------~~~-----~~~-----------~~~----~~~~~~~~~~~~~~~------   55 (207)
                      +.+.|.|.|+||+|||||+++|..      .++     +++           +.+    .....++.+.+...+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            458899999999999999998851      111     011           000    011233334333221      


Q ss_pred             ------------eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546           56 ------------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNK  123 (207)
Q Consensus        56 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK  123 (207)
                                  ..+.+.|++|.|-.+...   ....-+|.+++|.-..-.+..+.++.-+.++..        ++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence                        235788889887433222   234569999999999877777777665555542        899999


Q ss_pred             CCCCCCCCCCHHHHHHHHH-------HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          124 TDLVDKRQVSIEEGDGKAK-------EFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      .|....... ..+.+....       .|..+++.+|+.++.|++++++.|.++..
T Consensus       177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            995333221 122222221       13468999999999999999999988654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.17  E-value=5.2e-10  Score=86.69  Aligned_cols=143  Identities=13%  Similarity=0.198  Sum_probs=92.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---cc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LI   75 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~   75 (207)
                      .++|+++|+.|+|||||+|+|++......          ..++..+......+..++..++++++||||..++-.   .|
T Consensus        23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w  102 (373)
T COG5019          23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW  102 (373)
T ss_pred             ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence            58999999999999999999997755322          123334555555566677788999999999332111   11


Q ss_pred             -----------ccc--------------cccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           76 -----------PSY--------------IRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        76 -----------~~~--------------~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                                 ..|              =..+|+++|.+..+.. ++..+ .+.+..+..    .+.+|-|+.|.|....
T Consensus       103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~  177 (373)
T COG5019         103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCCH
Confidence                       111              1357899999987752 22222 334444544    3668889999998755


Q ss_pred             CCCC--HHHHHHHHHHhCCeEEEEecCCCCC
Q 028546          130 RQVS--IEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus       130 ~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                      .++.  ...+++....+++++|.  ..+.+.
T Consensus       178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~  206 (373)
T COG5019         178 DELAEFKERIREDLEQYNIPVFD--PYDPED  206 (373)
T ss_pred             HHHHHHHHHHHHHHHHhCCceeC--CCCccc
Confidence            4432  34456666778888885  244443

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=7.7e-10  Score=83.26  Aligned_cols=140  Identities=18%  Similarity=0.154  Sum_probs=92.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc-------C---------CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY-------D---------KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      .+..+|..+|+...|||||-.++..       .         ..+++..+..++..........+  ..+..+||||+.+
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHH
Confidence            3458999999999999999988751       1         11233333444443333333344  4567779999999


Q ss_pred             hccccccccccCCEEEEEEECCCh---HHHHHHHHHHHHHHHhcCCCC-eEEEEEeCCCCCCCCCC---CHHHHHHHHHH
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANR---QSFLNTSRWIEEVRTERGGDV-IIVLVGNKTDLVDKRQV---SIEEGDGKAKE  143 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~-p~ivv~nK~D~~~~~~~---~~~~~~~~~~~  143 (207)
                      |-.....-..+.|+.|||+++++.   ++-+.+.     +.+..  .+ -+++++||.|+.++.++   ...+.+.+...
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            887777777899999999999973   3433321     11111  24 48899999999886553   23455667777


Q ss_pred             hCC-----eEEEEecCC
Q 028546          144 FGV-----MFIETSAKA  155 (207)
Q Consensus       144 ~~~-----~~~~~s~~~  155 (207)
                      +++     +++.-|++.
T Consensus       161 y~f~gd~~Pii~gSal~  177 (394)
T COG0050         161 YGFPGDDTPIIRGSALK  177 (394)
T ss_pred             cCCCCCCcceeechhhh
Confidence            764     567666554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.15  E-value=1.9e-10  Score=87.83  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             CeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCCCChHHHHHHHHHH
Q 028546          115 VIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       115 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .+-++|+||+|+.+......+......+..  +.+++++|+++|+|++++++||.+.
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            445999999999754333344444444443  4689999999999999999999874

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=3.3e-10  Score=82.84  Aligned_cols=151  Identities=13%  Similarity=0.170  Sum_probs=95.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---ccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIP   76 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~   76 (207)
                      +++|+|||..|.|||||+|+++...+...         ...+..++.....+..++...+++++||||..++-.   .|.
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            59999999999999999999986554321         123444555555566677778999999999433211   111


Q ss_pred             c-----------------------cc--ccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCC--C
Q 028546           77 S-----------------------YI--RDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLV--D  128 (207)
Q Consensus        77 ~-----------------------~~--~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~--~  128 (207)
                      .                       .+  ..+++++|.+..+. .++..+ .+.++.+.+    -+.++-|+.|.|..  +
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTle  200 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE  200 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence            1                       11  25778888887775 233332 233333433    35578889999954  3


Q ss_pred             CCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546          129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      ++....+.+++....+++.+|+-.+.+-+.=+..++
T Consensus       201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN  236 (336)
T KOG1547|consen  201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLN  236 (336)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccccccchhHHHHH
Confidence            444445556666677889888877766544333333

>cd01855 YqeH YqeH

Probab=99.12  E-value=4.1e-10  Score=82.05  Aligned_cols=94  Identities=26%  Similarity=0.332  Sum_probs=65.8

Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhC
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFG  145 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  145 (207)
                      +..++..+++++|++++|+|++++..     .|...+.... .+.|+++|+||+|+.+... .......+.     ...+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            57788889999999999999987431     1122222122 3589999999999865433 222233232     2233


Q ss_pred             C---eEEEEecCCCCChHHHHHHHHHHcC
Q 028546          146 V---MFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       146 ~---~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      .   .++++|++++.|+++++++|.+.+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            2   6899999999999999999999875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=6.4e-10  Score=87.81  Aligned_cols=138  Identities=21%  Similarity=0.263  Sum_probs=94.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh--cCCC--------------CCc----cccccceeeeEEEEEECCeEEEEEEEecC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM--YDKF--------------DTT----YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~--~~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (207)
                      .++-..+|+-+|.+|||||-..|+  ++-.              ..+    .....++.+....+.++.....+++.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            455678999999999999999886  1111              100    12344677777777777767899999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV  146 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (207)
                      |+++|...+=..+..+|..|.|+|+..+-.-.+ .++++..+.+   ++|++=++||+|-... + ..+...+..+.+++
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrlR---~iPI~TFiNKlDR~~r-d-P~ELLdEiE~~L~i  163 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRLR---DIPIFTFINKLDREGR-D-PLELLDEIEEELGI  163 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhhc---CCceEEEeeccccccC-C-hHHHHHHHHHHhCc
Confidence            999998887777889999999999986433222 3444444433   7999999999996322 2 13333444445554


Q ss_pred             eEEE
Q 028546          147 MFIE  150 (207)
Q Consensus       147 ~~~~  150 (207)
                      ..++
T Consensus       164 ~~~P  167 (528)
T COG4108         164 QCAP  167 (528)
T ss_pred             ceec
Confidence            4333

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.12  E-value=1.7e-10  Score=93.06  Aligned_cols=161  Identities=20%  Similarity=0.386  Sum_probs=119.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +.+++|+.|||..++|||+|+++++.+.|.+...+..+  .+..++.++++..-+.+.|.+|..     ...|...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            35689999999999999999999999988655444433  355666778887788888888732     24556789999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHH-hCCeEEEEecCCCCChHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDK--RQVSIEEGDGKAKE-FGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~  161 (207)
                      ||||.+.+..+|+.+..+...+..... ..+|+++++++.-....  +.........++.+ ..+.+|++.+.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            999999999999998888777754433 46778888877554322  23333344444443 457899999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028546          162 LFRKIAAALPGM  173 (207)
Q Consensus       162 ~~~~l~~~~~~~  173 (207)
                      +|+.+..++...
T Consensus       180 vf~~~~~k~i~~  191 (749)
T KOG0705|consen  180 VFQEVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHHHHH
Confidence            999998876544

>PRK12289 GTPase RsgA; Reviewed

Probab=99.10  E-value=3.4e-10  Score=89.40  Aligned_cols=93  Identities=18%  Similarity=0.319  Sum_probs=68.1

Q ss_pred             cccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (207)
                      .+....+.++|.+++|+|+.++. ....+.+|+..+..   .++|+++|+||+|+.++.+.  .........++++++++
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            34455688999999999998765 44456677665532   26899999999999644221  22223334678899999


Q ss_pred             ecCCCCChHHHHHHHHHHc
Q 028546          152 SAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~  170 (207)
                      |+.++.|++++++.|...+
T Consensus       156 SA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        156 SVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             EcCCCCCHHHHhhhhccce
Confidence            9999999999999997643

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.10  E-value=7.4e-09  Score=76.43  Aligned_cols=155  Identities=19%  Similarity=0.234  Sum_probs=105.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR   80 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~   80 (207)
                      ..-+++++|-|.+|||||+..+..-.........++..+....+.+++.  .+++.|.||.-.-       ....-...+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            3579999999999999999999876655555566777777888888884  6888899994332       223445578


Q ss_pred             cCCEEEEEEECCChHHHH-HHHHHHHHHHHhcC-----------------------------------------------
Q 028546           81 DSSVAVIVYDVANRQSFL-NTSRWIEEVRTERG-----------------------------------------------  112 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~-----------------------------------------------  112 (207)
                      .+|.+++|.|++..+.-. .+.+.++.+.-+.+                                               
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            899999999998644333 23444444422211                                               


Q ss_pred             ------------------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          113 ------------------GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       113 ------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                                        ..++++.|-||+|.     ++.++...++++-+--+  +|.....|++.+++.+-+.+.
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~PnsvV--iSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNSVV--ISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCcEE--EEeccccCHHHHHHHHHHHhc
Confidence                              13445666677764     45666666766555444  455556678888888877654

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=3.9e-09  Score=82.39  Aligned_cols=143  Identities=14%  Similarity=0.238  Sum_probs=90.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------   73 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------   73 (207)
                      .|.++++|+.|.|||||+|.|+...+...         ...+..+......+.-++..++++++||||..+.-.      
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            49999999999999999999987655322         112333444444455567788999999999332111      


Q ss_pred             -------------------ccccccc--cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           74 -------------------LIPSYIR--DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        74 -------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                                         ..+..+.  .+|+.+|.+..+.. .+..+ ...+..+..    .+.+|-|+.|.|...+.+
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK----KVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc----cccccceeeccccCCHHH
Confidence                               1111122  68899999988752 22222 223333333    467888999999865544


Q ss_pred             CC--HHHHHHHHHHhCCeEEEEecCCC
Q 028546          132 VS--IEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      +.  ...++.....+++++|....-..
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence            32  34455666677888776665554

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=8.7e-10  Score=90.98  Aligned_cols=114  Identities=20%  Similarity=0.221  Sum_probs=84.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------ccccceeeeEEEEE---ECCeEEEEEEEecCCh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY-----------------QATIGIDFLSKTMY---LEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~---~~~~~~~~~i~D~~G~   68 (207)
                      -.+++++|+-.+|||+|+.-|..+..+..+                 .+..++.....+..   .+++.+-+++.||||+
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH  207 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH  207 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence            378999999999999999999866553331                 12233333333332   3566788999999999


Q ss_pred             hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      -.|.......++.+|++++|+|+.+.-.++.-+-....+.    .+.|++||+||+|.
T Consensus       208 VnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  208 VNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR  261 (971)
T ss_pred             ccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence            9999888888999999999999998666655433333333    26899999999995

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=6.4e-10  Score=86.12  Aligned_cols=121  Identities=21%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCe------------------------------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDR------------------------------   56 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------   56 (207)
                      .+.-|+++|+-..||||||+.|+.+.|+..+. +..+.+.+...+..+..                              
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            34679999999999999999999999975543 34444544444432211                              


Q ss_pred             ---------EEEEEEEecCChh-----------hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe
Q 028546           57 ---------TVRLQLWDTAGQE-----------RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI  116 (207)
Q Consensus        57 ---------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p  116 (207)
                               --.++++||||.-           .|...+.=++..+|.+|++||+-.-+--++..+.+..++-+   .--
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~---Edk  213 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH---EDK  213 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC---cce
Confidence                     0138999999922           13334455678999999999986433333334444444433   334


Q ss_pred             EEEEEeCCCCCCCCC
Q 028546          117 IVLVGNKTDLVDKRQ  131 (207)
Q Consensus       117 ~ivv~nK~D~~~~~~  131 (207)
                      +-||+||.|+.+..+
T Consensus       214 iRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  214 IRVVLNKADQVDTQQ  228 (532)
T ss_pred             eEEEeccccccCHHH
Confidence            778999999876654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.02  E-value=7.3e-10  Score=84.42  Aligned_cols=150  Identities=14%  Similarity=0.155  Sum_probs=103.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hccccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~   80 (207)
                      .-|.|||=.++|||||+++|.+........-..+.+......+..++. .+.+.||.|.-.         |..... -+.
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe-eVa  256 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE-EVA  256 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH-HHh
Confidence            458999999999999999999877766667777777777776666654 788889999332         222222 246


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe----EEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI----IVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      .+|.++.|.|+++|..-......+..+....-...|    ++=|.||+|..+... .       ...+  ..+.+|+.+|
T Consensus       257 eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n--~~v~isaltg  326 (410)
T KOG0410|consen  257 EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKN--LDVGISALTG  326 (410)
T ss_pred             hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccC--CccccccccC
Confidence            899999999999976443333334444433211222    567788888643221 1       1112  2678899999


Q ss_pred             CChHHHHHHHHHHcC
Q 028546          157 FNIKPLFRKIAAALP  171 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~  171 (207)
                      +|++++.+.+-..+.
T Consensus       327 dgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  327 DGLEELLKAEETKVA  341 (410)
T ss_pred             ccHHHHHHHHHHHhh
Confidence            999999999887754

>PRK12288 GTPase RsgA; Reviewed

Probab=99.00  E-value=2.9e-09  Score=84.19  Aligned_cols=89  Identities=20%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHHhCCeEEEEecCCCC
Q 028546           79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-SIEEGDGKAKEFGVMFIETSAKAGF  157 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~  157 (207)
                      ..++|.+++|++.+...++..+.+|+..+..   .++|+++|+||+|+.++.+. ............+++++++|+.++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999887888889999875543   25889999999999654321 1122223334568899999999999


Q ss_pred             ChHHHHHHHHHHc
Q 028546          158 NIKPLFRKIAAAL  170 (207)
Q Consensus       158 ~i~~~~~~l~~~~  170 (207)
                      |+++++++|...+
T Consensus       195 GideL~~~L~~ki  207 (347)
T PRK12288        195 GLEELEAALTGRI  207 (347)
T ss_pred             CHHHHHHHHhhCC
Confidence            9999999997654

>cd01859 MJ1464 MJ1464

Probab=98.99  E-value=1.1e-09  Score=77.25  Aligned_cols=95  Identities=24%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (207)
                      +.+...+++++|++|+|+|++++..... ..+...+..   .+.|+++|+||+|+.+....  ..........+.+++++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i   76 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV   76 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence            4456677788999999999987543222 122222221   25899999999998543221  11112233456789999


Q ss_pred             ecCCCCChHHHHHHHHHHcCC
Q 028546          152 SAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      |++++.|++++++.|.+.+..
T Consensus        77 Sa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          77 SAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             EccccccHHHHHHHHHHHHhh
Confidence            999999999999999988753

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.95  E-value=4.6e-09  Score=81.27  Aligned_cols=89  Identities=20%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             ccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546           76 PSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK  154 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (207)
                      ...+.++|++++|+|+.++. ++..+.+|+..+...   ++|+++|+||+|+.++.+  ...........+++++++|++
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~  147 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAK  147 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECC
Confidence            34578999999999999887 778888888766543   589999999999965421  111222334568899999999


Q ss_pred             CCCChHHHHHHHHHH
Q 028546          155 AGFNIKPLFRKIAAA  169 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~  169 (207)
                      ++.|+++++.+|...
T Consensus       148 ~g~gi~~L~~~L~~k  162 (287)
T cd01854         148 TGEGLDELREYLKGK  162 (287)
T ss_pred             CCccHHHHHhhhccc
Confidence            999999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.92  E-value=1.6e-08  Score=78.78  Aligned_cols=169  Identities=16%  Similarity=0.224  Sum_probs=97.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccccceeeeEEE-----------------
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT------------------YQATIGIDFLSKT-----------------   50 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~------------------~~~~~~~~~~~~~-----------------   50 (207)
                      ..-+++++|+|...+|||||+..|..+..+..                  +.+..+.++....                 
T Consensus       130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld  209 (641)
T KOG0463|consen  130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD  209 (641)
T ss_pred             cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence            34468999999999999999987764433221                  1122222221111                 


Q ss_pred             --EEECCeEEEEEEEecCChhhhccccccccc--cCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           51 --MYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        51 --~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                        --..+...-++|+|.+|+++|....-.-+.  -.|...+++-++-.  +-. .++-+......   ++|++||++|+|
T Consensus       210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--IiGmTKEHLgLALaL---~VPVfvVVTKID  284 (641)
T KOG0463|consen  210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--IIGMTKEHLGLALAL---HVPVFVVVTKID  284 (641)
T ss_pred             ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--ceeccHHhhhhhhhh---cCcEEEEEEeec
Confidence              111222235899999999998776543333  36777888877631  111 11111111111   699999999999


Q ss_pred             CCCCCCCCHHHHHHHHH-----------------------------HhCCeEEEEecCCCCChHHHHHHHHHHcCCCccC
Q 028546          126 LVDKRQVSIEEGDGKAK-----------------------------EFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL  176 (207)
Q Consensus       126 ~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~  176 (207)
                      +..+..+ .+..+.+.+                             +.-|++|++|..+|.|+ +++..++..+.-+...
T Consensus       285 MCPANiL-qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~  362 (641)
T KOG0463|consen  285 MCPANIL-QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQL  362 (641)
T ss_pred             cCcHHHH-HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCCh-HHHHHHHhhcCccccc
Confidence            9765432 111111111                             11267999999999998 5556666665544444


Q ss_pred             ccccc
Q 028546          177 SSTKQ  181 (207)
Q Consensus       177 ~~~~~  181 (207)
                      ..+.+
T Consensus       363 ~E~~P  367 (641)
T KOG0463|consen  363 NENDP  367 (641)
T ss_pred             ccCCC
Confidence            43333

>PRK00098 GTPase RsgA; Reviewed

Probab=98.90  E-value=7e-09  Score=80.69  Aligned_cols=88  Identities=22%  Similarity=0.237  Sum_probs=64.8

Q ss_pred             ccccCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546           78 YIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      .+.++|++++|+|+.++..... +.+|+..+..   .++|+++|+||+|+.+..+ ...........++++++++|++++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            3589999999999987765444 4667666543   2689999999999963322 122233344556889999999999


Q ss_pred             CChHHHHHHHHHH
Q 028546          157 FNIKPLFRKIAAA  169 (207)
Q Consensus       157 ~~i~~~~~~l~~~  169 (207)
                      .|++++++.|...
T Consensus       153 ~gi~~L~~~l~gk  165 (298)
T PRK00098        153 EGLDELKPLLAGK  165 (298)
T ss_pred             ccHHHHHhhccCc
Confidence            9999999988644

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=2.2e-08  Score=73.51  Aligned_cols=158  Identities=18%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ccceeeeEEEEEECCeEEEEEEEecCChhhhccc---cccccccCCEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVA   85 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d~~   85 (207)
                      .+|+++|...+|||++-...+....+.+.-- ..+..+.  .-++.+.-+++.+||.||+-.+-.-   ....++++.++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~--~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKIT--RDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCccc--HhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            4599999999999998887766554332110 0010110  0122334468999999998765432   34568999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCC-CCCCCCH------HHHHHHHHH----hCCeEEEEe
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLV-DKRQVSI------EEGDGKAKE----FGVMFIETS  152 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~-~~~~~~~------~~~~~~~~~----~~~~~~~~s  152 (207)
                      |||+|+.+ +-.+.+..+...+....  +.++.+-|++.|.|-. ++..+..      .....+++.    ....++.+|
T Consensus       106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            99999986 34455555555554433  3567788999999954 3322221      111111111    123467777


Q ss_pred             cCCCCChHHHHHHHHHHcC
Q 028546          153 AKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..+- .+-|.|..+.+.+-
T Consensus       185 IyDH-SIfEAFSkvVQkLi  202 (347)
T KOG3887|consen  185 IYDH-SIFEAFSKVVQKLI  202 (347)
T ss_pred             ecch-HHHHHHHHHHHHHh
Confidence            7765 77788877777543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.86  E-value=5.2e-08  Score=76.12  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=97.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ccceeeeEEEEEECC----------------
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA--------------TIGIDFLSKTMYLED----------------   55 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~----------------   55 (207)
                      .+..+.+.+.|+...|||||+-.|+.+..+...-.              ..+.++....+-+++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            45678999999999999999999886665433221              122233333332222                


Q ss_pred             -----eEEEEEEEecCChhhhcccc--ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           56 -----RTVRLQLWDTAGQERFRSLI--PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        56 -----~~~~~~i~D~~G~~~~~~~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                           ..--+.|+|+.|++.|....  ..+-.+.|..++++.+++.-+.-. ++-+-.+...   ..|++|+++|+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~a~---~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIALAM---ELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhhhh---cCCEEEEEEecccCc
Confidence                 12248899999999886644  334567999999999997432211 2222222211   589999999999975


Q ss_pred             CCCCC--HHHHH----------------------HHHHHhC---CeEEEEecCCCCChHHHHHHHHH
Q 028546          129 KRQVS--IEEGD----------------------GKAKEFG---VMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus       129 ~~~~~--~~~~~----------------------~~~~~~~---~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      +..+.  .+++.                      ..+.+.+   .|+|.+|+-+|+|++-+.+.+..
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            42211  11111                      1112222   37999999999998655444443

>cd01858 NGP_1 NGP-1

Probab=98.84  E-value=8.7e-09  Score=72.73  Aligned_cols=89  Identities=18%  Similarity=0.186  Sum_probs=58.3

Q ss_pred             ccccCCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q 028546           78 YIRDSSVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA  155 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (207)
                      .+.++|++++|+|+.++..  ...+.+++   .. ...++|+++|+||+|+.++.+. ......+...+...++.+|++.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHH---Hh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            3578999999999987532  22233322   22 2335899999999999644321 1122222222233458899999


Q ss_pred             CCChHHHHHHHHHHcC
Q 028546          156 GFNIKPLFRKIAAALP  171 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~  171 (207)
                      +.|++++++.|.+...
T Consensus        80 ~~~~~~L~~~l~~~~~   95 (157)
T cd01858          80 PFGKGSLIQLLRQFSK   95 (157)
T ss_pred             cccHHHHHHHHHHHHh
Confidence            9999999999988754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.83  E-value=3e-08  Score=80.15  Aligned_cols=123  Identities=16%  Similarity=0.168  Sum_probs=78.8

Q ss_pred             eeeEEEEEE-CCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH----------HHHHHHHHHHHHHH-hcC
Q 028546           45 DFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ----------SFLNTSRWIEEVRT-ERG  112 (207)
Q Consensus        45 ~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~-~~~  112 (207)
                      .+....+.+ .+  ..+.++|++|+...+..|..++.+++++|||+++++.+          .+.....++..+-. ..-
T Consensus       224 Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  224 GITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             SEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            334444555 44  57899999999999999999999999999999998521          23333333333322 222


Q ss_pred             CCCeEEEEEeCCCCCCC----C-----------C---CCHHHHHHHHHHh--------C--C--eEEEEecCCCCChHHH
Q 028546          113 GDVIIVLVGNKTDLVDK----R-----------Q---VSIEEGDGKAKEF--------G--V--MFIETSAKAGFNIKPL  162 (207)
Q Consensus       113 ~~~p~ivv~nK~D~~~~----~-----------~---~~~~~~~~~~~~~--------~--~--~~~~~s~~~~~~i~~~  162 (207)
                      .+.|++|++||.|+..+    .           .   -..+.+..+....        .  .  -+..+++.+...+..+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v  381 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV  381 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred             ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence            57999999999996421    0           0   1223333332221        1  1  3457888888888888


Q ss_pred             HHHHHHH
Q 028546          163 FRKIAAA  169 (207)
Q Consensus       163 ~~~l~~~  169 (207)
                      |+.+.+.
T Consensus       382 ~~~v~~~  388 (389)
T PF00503_consen  382 FNAVKDI  388 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHHhcCc
Confidence            8887765

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=2.9e-08  Score=81.08  Aligned_cols=138  Identities=11%  Similarity=0.156  Sum_probs=84.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ..++.+=++|+||||.||||||..|+..-....     -.++......+.+..-+++|.+||.  +...++. ..+-+|.
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t-----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDL  136 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT-----IDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADL  136 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh-----hhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhhe
Confidence            345668899999999999999998875432111     1122223344566777999999993  3344433 4477999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCHHHHHHHHHH-------hCCeEEEEecCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVSIEEGDGKAKE-------FGVMFIETSAKA  155 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~  155 (207)
                      +++++|.+-+-.+++. +++..+..+   ..| ++-|+++.|+.....- ...+.....+       .|+++|.+|...
T Consensus       137 VlLlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         137 VLLLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eEEEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            9999999954333332 233333333   344 6778999998643222 2222221111       167888888554

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=8.6e-08  Score=79.68  Aligned_cols=144  Identities=22%  Similarity=0.282  Sum_probs=86.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccc--------------------------------------------e
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG--------------------------------------------I   44 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~--------------------------------------------~   44 (207)
                      ..||+++|...+||||++|+++..++-++..-..+                                            -
T Consensus       109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~  188 (749)
T KOG0448|consen  109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA  188 (749)
T ss_pred             ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence            47999999999999999999985554222111000                                            0


Q ss_pred             eeeEEEEEECCe----EEEEEEEecCChh---hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE
Q 028546           45 DFLSKTMYLEDR----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII  117 (207)
Q Consensus        45 ~~~~~~~~~~~~----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~  117 (207)
                      ..-.+.+.-++.    .-.+.++|.||.+   ...+-...+...+|++|||.++.+..+.. .+.++..+...   +..+
T Consensus       189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~---Kpni  264 (749)
T KOG0448|consen  189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE---KPNI  264 (749)
T ss_pred             ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc---CCcE
Confidence            000011111110    0157888999944   33444566778999999999998644332 34455545444   4568


Q ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHHhC--------CeEEEEecCCC
Q 028546          118 VLVGNKTDLVDKRQVSIEEGDGKAKEFG--------VMFIETSAKAG  156 (207)
Q Consensus       118 ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~  156 (207)
                      +++.||+|.........+.+......+.        =.+|++|++.-
T Consensus       265 FIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~  311 (749)
T KOG0448|consen  265 FILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV  311 (749)
T ss_pred             EEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence            8888999986554444444444433332        24888986654

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.7e-08  Score=84.58  Aligned_cols=120  Identities=22%  Similarity=0.181  Sum_probs=85.8

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC------------CCc--cccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKF------------DTT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ...+..+--+|+++.+...|||||...|+...-            -+.  ...+.+++.....+..-...+.++++|+||
T Consensus         2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg   81 (887)
T KOG0467|consen    2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence            445566668999999999999999999984321            111  123444444444454544567899999999


Q ss_pred             hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      +-+|.+......+-+|++++++|+.++-..++..-+.+.+.+    +.-+++|+||+|
T Consensus        82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkid  135 (887)
T KOG0467|consen   82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKID  135 (887)
T ss_pred             ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhh
Confidence            999999999999999999999999865444443333333332    345789999999

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=3.9e-08  Score=76.59  Aligned_cols=161  Identities=14%  Similarity=0.239  Sum_probs=97.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ccceeeeEE---------EEEEC---------
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA--------------TIGIDFLSK---------TMYLE---------   54 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~--------------~~~~~~~~~---------~~~~~---------   54 (207)
                      .-+++++|+|...+|||||+..|..+..+..+.+              +.+..+...         .+.+.         
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            3468999999999999999998886655433221              111111111         11110         


Q ss_pred             -CeEEEEEEEecCChhhhccccccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           55 -DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        55 -~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                       ....-++|+|.+|+.+|....-..+.  ..|..++|++++..-.+.. .+-+..+...   ++|++|+++|+|+.+...
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence             11224899999999998876544433  4788999999986543322 2222223323   699999999999976522


Q ss_pred             C------------------------CHHHHHHHHHHh---C-CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          132 V------------------------SIEEGDGKAKEF---G-VMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       132 ~------------------------~~~~~~~~~~~~---~-~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      +                        ..+++..-+.+.   + .++|-+|+-+|+|++-+...|.-+-.
T Consensus       321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp  388 (591)
T KOG1143|consen  321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSP  388 (591)
T ss_pred             HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCC
Confidence            1                        112222222221   2 37999999999998665555544433

>cd01858 NGP_1 NGP-1

Probab=98.77  E-value=2.6e-08  Score=70.34  Aligned_cols=55  Identities=25%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      +.++|+++|.+|+|||||+|++.+.... ....++.+..  ...+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            4678999999999999999999986653 3333443332  22233332   478999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.77  E-value=2.1e-08  Score=69.45  Aligned_cols=53  Identities=23%  Similarity=0.299  Sum_probs=38.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      +++++|.+|+|||||+|++.+....... .+..+.  ....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTK--HFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCccc--ceEEEEeCC---CEEEEECCCc
Confidence            7999999999999999999988764222 223332  333444544   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.75  E-value=5.2e-08  Score=77.76  Aligned_cols=95  Identities=34%  Similarity=0.447  Sum_probs=69.2

Q ss_pred             hhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH----HHHHH
Q 028546           68 QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD----GKAKE  143 (207)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~  143 (207)
                      .++|..+...+...++++++|+|+.+..     ..|...+..... +.|+++|+||+|+.+. ....+...    ..+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999997533     223344443332 5789999999998653 22233333    33555


Q ss_pred             hCC---eEEEEecCCCCChHHHHHHHHHH
Q 028546          144 FGV---MFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       144 ~~~---~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .++   .++++||++|.|++++++.|.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            665   48999999999999999999775

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.73  E-value=3.8e-08  Score=70.39  Aligned_cols=54  Identities=19%  Similarity=0.353  Sum_probs=39.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      .++++++|.|++|||||+|++.+... .....++.+.+.  ..+..+.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcC
Confidence            48999999999999999999998765 333444444432  3333333   588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=8.6e-08  Score=73.78  Aligned_cols=142  Identities=21%  Similarity=0.198  Sum_probs=90.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc-------CC---C------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY-------DK---F------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~-------~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      +..+|.-+|+...|||||-.++..       .+   |      +++  ...++.+....+.+....-.+.=.||||+.+|
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEE--kaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEE--KARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhh--hhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            458899999999999999888751       11   1      222  33344444444444443334555699999998


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC---CCHHHHHHHHHHhC---
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ---VSIEEGDGKAKEFG---  145 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~---  145 (207)
                      -.....-..+.|+.|+|+.++|..- ...++-+...++ .+ -..++|++||.|+.++.+   +..-+++++...++   
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQ-VG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G  207 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQ-VG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG  207 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHH-cC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence            7776666678999999999998432 222221111221 12 245899999999985543   33445566677775   


Q ss_pred             --CeEEEEecC
Q 028546          146 --VMFIETSAK  154 (207)
Q Consensus       146 --~~~~~~s~~  154 (207)
                        ++++.-||+
T Consensus       208 d~~PvI~GSAL  218 (449)
T KOG0460|consen  208 DNTPVIRGSAL  218 (449)
T ss_pred             CCCCeeecchh
Confidence              468776643

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.71  E-value=2.8e-08  Score=69.97  Aligned_cols=84  Identities=20%  Similarity=0.103  Sum_probs=55.3

Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      |++++|+|+.++.+...  .++.. ......++|+++|+||+|+.+..++ ......+....+..++.+|+.++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999987654433  22221 1112236899999999998543221 11122232233567899999999999999


Q ss_pred             HHHHHHHc
Q 028546          163 FRKIAAAL  170 (207)
Q Consensus       163 ~~~l~~~~  170 (207)
                      ++.+.+..
T Consensus        77 ~~~i~~~~   84 (155)
T cd01849          77 ESAFTKQT   84 (155)
T ss_pred             HHHHHHHh
Confidence            99997754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00092 GTP-binding protein YchF

Probab=98.69  E-value=6.4e-08  Score=76.55  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhh---
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER---   70 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---   70 (207)
                      +++.++|.|++|||||++++++... .....+.++++.....+.+.+.               ...+.+.|.||.-.   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999999887 5555577777777777666552               12678999999543   


Q ss_pred             ----hccccccccccCCEEEEEEECC
Q 028546           71 ----FRSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        71 ----~~~~~~~~~~~~d~~ilv~d~~   92 (207)
                          ........++++|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223444578999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01856 YlqF YlqF

Probab=98.66  E-value=6.6e-08  Score=69.23  Aligned_cols=91  Identities=21%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      ......+.++|++++|+|++++...... .++..+     .+.|+++|+||+|+.++...  ..........+..++.+|
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            3456667899999999999865432221 112211     14789999999998543211  111122223345789999


Q ss_pred             cCCCCChHHHHHHHHHHcC
Q 028546          153 AKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~  171 (207)
                      ++++.|++++.+.+.+.+.
T Consensus        83 a~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          83 AKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CCCcccHHHHHHHHHHHHH
Confidence            9999999999999998763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.63  E-value=7.2e-08  Score=72.27  Aligned_cols=157  Identities=17%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCC----------hhhhccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSL   74 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   74 (207)
                      ..++.++++.|..++|||+|||-++......... +..+.......+.+..   .+.++|.||          ..++..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            3456899999999999999999998766532211 1333222233333343   678889999          2233344


Q ss_pred             cccccccC---CEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCCC-----CC------HHHHHH
Q 028546           75 IPSYIRDS---SVAVIVYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKTDLVDKRQ-----VS------IEEGDG  139 (207)
Q Consensus        75 ~~~~~~~~---d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-----~~------~~~~~~  139 (207)
                      ...|+.+-   --+++.+|++-+  ++.... .++.+.+.   ++|+.+|+||+|......     ..      ....-.
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~---~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN---NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc---CCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            45554332   245666677632  222111 11222222   699999999999642211     10      111111


Q ss_pred             HHHHhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          140 KAKEFGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       140 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      .......+++.+|+.++.|+++++-.+.+..
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhhhh
Confidence            1112245788999999999998877766654

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.62  E-value=1.4e-07  Score=70.11  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             eeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCCh-------HHHHHHHHHHHHHHHh----cCC
Q 028546           45 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANR-------QSFLNTSRWIEEVRTE----RGG  113 (207)
Q Consensus        45 ~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~-------~s~~~~~~~~~~i~~~----~~~  113 (207)
                      .++...+.++-  ++|+.+|.+|+.+-+..|...+..+.++|||...+..       .+-+.+++.+..++..    ...
T Consensus       191 GIfet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  191 GIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ceeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            33444444444  6899999999999999999999999999999998851       1122333333333222    224


Q ss_pred             CCeEEEEEeCCCCC
Q 028546          114 DVIIVLVGNKTDLV  127 (207)
Q Consensus       114 ~~p~ivv~nK~D~~  127 (207)
                      .+.+||++||.|+.
T Consensus       269 tisvIlFLNKqDll  282 (379)
T KOG0099|consen  269 TISVILFLNKQDLL  282 (379)
T ss_pred             hhheeEEecHHHHH
Confidence            57799999999974

>cd01855 YqeH YqeH

Probab=98.62  E-value=6e-08  Score=70.62  Aligned_cols=54  Identities=22%  Similarity=0.335  Sum_probs=37.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ..+++++|.+|+|||||+|+|.+...         .....++++.+  ...+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEecCC---CCEEEeCcC
Confidence            46899999999999999999997543         22333443333  33333433   578999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.61  E-value=1.4e-07  Score=72.56  Aligned_cols=86  Identities=20%  Similarity=0.195  Sum_probs=67.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC---------------eEEEEEEEecCChhh--
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER--   70 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G~~~--   70 (207)
                      ..++|.+||.|++|||||+|+++........-|..+++.....+.+.+               ....++++|++|.-.  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            348999999999999999999999998888889999888877666532               134699999998332  


Q ss_pred             -----hccccccccccCCEEEEEEECCC
Q 028546           71 -----FRSLIPSYIRDSSVAVIVYDVAN   93 (207)
Q Consensus        71 -----~~~~~~~~~~~~d~~ilv~d~~~   93 (207)
                           .......-++++|+++-|+++.+
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                 22233445789999999998863

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.60  E-value=9.6e-07  Score=65.95  Aligned_cols=84  Identities=17%  Similarity=0.115  Sum_probs=52.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCccc-cccceeeeEEEEEEC-CeEEEEEEEecCChhhhcc------cccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD--KFDTTYQ-ATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIPSYI   79 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~~~~~   79 (207)
                      .-|.|+|++++|||+|+|++++.  .|..... ...+..+..+..... +....+.++||+|......      .....+
T Consensus         8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l   87 (224)
T cd01851           8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL   87 (224)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence            56789999999999999999998  6643322 222223333333221 2235899999999654322      112222


Q ss_pred             cc--CCEEEEEEECCC
Q 028546           80 RD--SSVAVIVYDVAN   93 (207)
Q Consensus        80 ~~--~d~~ilv~d~~~   93 (207)
                      ..  ++++||..+...
T Consensus        88 ~~llss~~i~n~~~~~  103 (224)
T cd01851          88 ATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHhCEEEEeccCcc
Confidence            33  788888887764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01856 YlqF YlqF

Probab=98.59  E-value=1.9e-07  Score=66.80  Aligned_cols=56  Identities=20%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-cccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      ..++++++|.+++|||||++++.+..+... ..+..+..  ...+.++   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            347999999999999999999998776422 22333333  3333333   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.58  E-value=2.3e-07  Score=71.57  Aligned_cols=56  Identities=25%  Similarity=0.373  Sum_probs=40.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      ..++++++|.+++|||||+|++.+.... ....++.+..  ...+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            4589999999999999999999987653 3333443333  23344433   5789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.57  E-value=1.6e-07  Score=72.32  Aligned_cols=94  Identities=26%  Similarity=0.241  Sum_probs=62.9

Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (207)
                      .......+..+|++++|+|+..+.+....  .+..+.    .+.|+++|+||+|+.+.... ...... ....+.+++.+
T Consensus        12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~~-~~~~~~-~~~~~~~vi~i   83 (276)
T TIGR03596        12 RREIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAVT-KQWLKY-FEEKGIKALAI   83 (276)
T ss_pred             HHHHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHHH-HHHHHH-HHHcCCeEEEE
Confidence            33456678899999999999865433221  111111    14789999999998543211 111112 22345688999


Q ss_pred             ecCCCCChHHHHHHHHHHcCCC
Q 028546          152 SAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      |+.++.|++++.+.+.+.+.+.
T Consensus        84 Sa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        84 NAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             ECCCcccHHHHHHHHHHHHHHh
Confidence            9999999999999998887644

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.57  E-value=2.7e-07  Score=71.54  Aligned_cols=57  Identities=25%  Similarity=0.332  Sum_probs=41.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      ..++++++|.+++|||||+|++.+... .....++.+.+.  ..+..+.   .+.++||||.-
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence            458999999999999999999998776 333344544443  3344443   57899999953

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.57  E-value=6.8e-07  Score=66.54  Aligned_cols=152  Identities=20%  Similarity=0.242  Sum_probs=94.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------ccccccccccC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS   82 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   82 (207)
                      -++.++|-|.+|||||+..+.+..........++..........++  -++.+.|.||.-+-       ........+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4889999999999999999987654433222333222233333344  47899999994321       22445567889


Q ss_pred             CEEEEEEECCChHHHHHH-HHHHHHHHHh---------------------------------------------------
Q 028546           83 SVAVIVYDVANRQSFLNT-SRWIEEVRTE---------------------------------------------------  110 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~-~~~~~~i~~~---------------------------------------------------  110 (207)
                      +.+++|.|+..+-+...+ ...++-+.-+                                                   
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            999999999864433332 1111111000                                                   


Q ss_pred             --------cC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          111 --------RG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       111 --------~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                              ..  ..+|.+.++||+|...-.++..        .+. ....++|+.++.|++++++.+-+.+.
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi--------i~~iphavpISA~~~wn~d~lL~~mweyL~  281 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI--------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK  281 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceeeeeccce--------eeeccceeecccccccchHHHHHHHhhcch
Confidence                    01  2567788888888543333221        122 34689999999999999998877654

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=3e-07  Score=72.29  Aligned_cols=155  Identities=17%  Similarity=0.208  Sum_probs=95.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (207)
                      -..++++++|+..+||||+-..++...                               -.+++....++......+....
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            455999999999999999887664110                               0223333444444444444443


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCC---hHHHHHH--HHHHHHHHHhcCCCCeEEEEEeCCCCCCC-
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN---RQSFLNT--SRWIEEVRTERGGDVIIVLVGNKTDLVDK-  129 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-  129 (207)
                        -++++.|+||+..|-...-.-..+||+.++|+++-.   ...|+.-  .+....+. ....-...|+++||+|-... 
T Consensus       157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La-kt~gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KTAGVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH-HhhccceEEEEEEeccCCccC
Confidence              479999999987766655555678999999998843   2334432  22222222 22234568999999995422 


Q ss_pred             -CCCCHHHH----HHHHHHh------CCeEEEEecCCCCChHHHHH
Q 028546          130 -RQVSIEEG----DGKAKEF------GVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       130 -~~~~~~~~----~~~~~~~------~~~~~~~s~~~~~~i~~~~~  164 (207)
                       ..-.+++.    ..+....      ...++++|..+|.++++...
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             22222222    2233322      24689999999999887664

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.55  E-value=8.4e-08  Score=67.28  Aligned_cols=59  Identities=24%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC------ccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDT------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      -.++++|+.|+|||||+|+|++..-..      ...++.-+......+.+.+.   ..++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            457889999999999999999763311      11122222223344455442   478899996553

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.2e-07  Score=74.92  Aligned_cols=115  Identities=22%  Similarity=0.278  Sum_probs=90.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--------CCCCCc--------cccccceeeeEEEEEECCeEEEEEEEecCChhhhcc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY--------DKFDTT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~--------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   73 (207)
                      -+|.++.+..+||||.-.++++        +.+...        -.+..++.+....+.++.+++++.++||||+-+|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            5789999999999999988862        122111        123456777888888888889999999999999999


Q ss_pred             ccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           74 LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        74 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      .+...++--|+++.|||++-+-.-+.+.-|.+.-    ..++|-+.++||+|...
T Consensus       118 everclrvldgavav~dasagve~qtltvwrqad----k~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQAD----KFKIPAHCFINKMDKLA  168 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehhcc----ccCCchhhhhhhhhhhh
Confidence            9999999999999999999655556666666543    23689999999999743

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.55  E-value=5.8e-07  Score=81.71  Aligned_cols=115  Identities=21%  Similarity=0.240  Sum_probs=71.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcc----ccccceee-eEEEEEECCeEEEEEEEecCChh--------hhccccccc
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTY----QATIGIDF-LSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSY   78 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~   78 (207)
                      .+|+|++|+||||||..- +..++-..    ....+... ......+.+   +-.++|++|.-        .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999876 44443221    11111100 011112233   45789999921        122234333


Q ss_pred             c---------ccCCEEEEEEECCCh-----HH----HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           79 I---------RDSSVAVIVYDVANR-----QS----FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        79 ~---------~~~d~~ilv~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      +         +-.+++|+++|+.+-     +.    ...+...++++....+-..||.|+++|+|+..-.
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~GF  259 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGF  259 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcCH
Confidence            2         348999999999752     11    1345666677777778889999999999986543

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01859 MJ1464 MJ1464

Probab=98.54  E-value=3.5e-07  Score=64.40  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=37.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ...+++++|.+++|||||++++.+..... ..+..+.......+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45789999999999999999999765322 233333322222222332   689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.52  E-value=2.8e-07  Score=64.92  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=39.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ....+++++|.+++|||||+|++.+... .....+..+.+...  +..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            3568899999999999999999998663 23333444444333  2233   2588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.50  E-value=1.3e-05  Score=63.97  Aligned_cols=156  Identities=18%  Similarity=0.235  Sum_probs=87.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-----------------CCccccccceeeeE--------EEEEE-CCeEEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-----------------DTTYQATIGIDFLS--------KTMYL-EDRTVRLQL   62 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-----------------~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~i   62 (207)
                      .+=|.||||..+|||||+.+|....+                 +++ ..+.++....        ..+.+ ++..+++.+
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            47799999999999999999962211                 111 1111111111        12333 456678999


Q ss_pred             EecCChh-----hh---------cccc---------------ccccc--cCCEEEEEEECCC----hHHHHH-HHHHHHH
Q 028546           63 WDTAGQE-----RF---------RSLI---------------PSYIR--DSSVAVIVYDVAN----RQSFLN-TSRWIEE  106 (207)
Q Consensus        63 ~D~~G~~-----~~---------~~~~---------------~~~~~--~~d~~ilv~d~~~----~~s~~~-~~~~~~~  106 (207)
                      +||.|--     .|         .+-|               +..++  ..-++++.-|.+=    ++.+.. -.+.+..
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            9999811     00         0011               11111  2336666666651    233333 3444444


Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC--CCChHHHHHHHHHHc
Q 028546          107 VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA--GFNIKPLFRKIAAAL  170 (207)
Q Consensus       107 i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~l~~~~  170 (207)
                      +...   ++|+++++|-.+-.  .+-..+....+..+|+.++++++...  ...+..+++.++-.+
T Consensus       176 Lk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF  236 (492)
T PF09547_consen  176 LKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF  236 (492)
T ss_pred             HHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence            4444   69999999988732  22334555667778999988887554  444555555554433

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.47  E-value=6.1e-07  Score=62.13  Aligned_cols=77  Identities=23%  Similarity=0.220  Sum_probs=51.3

Q ss_pred             ccccccCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFL--NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                      ...+..+|++++|+|+.++.+..  .+.+++...    ..++|+++|+||+|+.++..  ...........+..++++|+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34568899999999998765433  233333322    13589999999999864332  22233344455678999999


Q ss_pred             CCCCC
Q 028546          154 KAGFN  158 (207)
Q Consensus       154 ~~~~~  158 (207)
                      .++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.47  E-value=2.5e-05  Score=54.26  Aligned_cols=148  Identities=14%  Similarity=0.214  Sum_probs=77.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecC-Chhh--------------h-
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------F-   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~-   71 (207)
                      ..++|.+.|+||+|||||+..+...--...   ...-.+....+..++...-|.++|.. |...              | 
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            469999999999999999988763211111   00112223333345555566666665 3111              1 


Q ss_pred             ----------ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH
Q 028546           72 ----------RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA  141 (207)
Q Consensus        72 ----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  141 (207)
                                .......++.||++|  +|--.+-.+. .......+........|++..+.+-+-    ..    ..+..
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr----~P----~v~~i  149 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR----HP----LVQRI  149 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC----Ch----HHHHh
Confidence                      011222234556554  4555432221 233444444444456887777765542    11    12223


Q ss_pred             HHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          142 KEFGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       142 ~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ...+..++.   .+..|-+.+++.+++.+..
T Consensus       150 k~~~~v~v~---lt~~NR~~i~~~Il~~L~~  177 (179)
T COG1618         150 KKLGGVYVF---LTPENRNRILNEILSVLKG  177 (179)
T ss_pred             hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence            333443333   5566666888888877654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.46  E-value=1.5e-06  Score=68.05  Aligned_cols=95  Identities=17%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             EEEEEEEecCChhhhccc----ccc--------ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546           57 TVRLQLWDTAGQERFRSL----IPS--------YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT  124 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~----~~~--------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  124 (207)
                      .+.+.++||||.......    ...        .-...+..++|+|++..  .+.+... .......   .+.-+|+||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~~---~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEAV---GLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhhC---CCCEEEEECC
Confidence            468999999995432211    111        11246789999999853  2333322 2222221   2457899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546          125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      |....    .-.+...+...+.|+.+++  +|++++++.
T Consensus       270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence            95322    2234555667799998888  777776653

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.44  E-value=1.2e-06  Score=61.84  Aligned_cols=64  Identities=14%  Similarity=0.077  Sum_probs=37.8

Q ss_pred             EEEEEEEecCChhhhcccccc--------ccccCCEEEEEEECCChHHH-HHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPS--------YIRDSSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      ..+..++|++|..+.......        ..-..|.+++++|+.+.... .....+..++...   +   ++++||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d---~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---D---RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---C---EEEEecccC
Confidence            357889999996543332221        23458899999998743221 1222233444322   2   789999995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.44  E-value=1.1e-06  Score=70.10  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                      +.++|.+++|+++...-....+.+++..+...   +++.++|+||+|+.++.+...+.....  ..+++++.+|+.++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            57899999999997444444556665555443   467789999999975421111112211  3478999999999999


Q ss_pred             hHHHHHHHH
Q 028546          159 IKPLFRKIA  167 (207)
Q Consensus       159 i~~~~~~l~  167 (207)
                      ++++..+|.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999999885

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=1.8e-07  Score=71.09  Aligned_cols=113  Identities=18%  Similarity=0.171  Sum_probs=76.1

Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-  133 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-  133 (207)
                      .+.|+|+||++-.-.....-..-.|++++++..++    +++-+.+.. .+.+..     +.++++-||+|+..+.+.. 
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa-veiM~L-----khiiilQNKiDli~e~~A~e  199 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA-VEIMKL-----KHIIILQNKIDLIKESQALE  199 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH-HHHhhh-----ceEEEEechhhhhhHHHHHH
Confidence            47899999988654444333345788899988875    344444322 222221     4589999999997654432 


Q ss_pred             -HHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546          134 -IEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       134 -~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~  177 (207)
                       .+.+..+...   .+.+++++||.-.-|++-+.++|...+..-....
T Consensus       200 q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf  247 (466)
T KOG0466|consen  200 QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF  247 (466)
T ss_pred             HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence             3334444443   2579999999999999999999999987554333

>PRK13796 GTPase YqeH; Provisional

Probab=98.42  E-value=2e-06  Score=68.88  Aligned_cols=94  Identities=31%  Similarity=0.443  Sum_probs=61.4

Q ss_pred             hhhccccccccccCC-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHHH
Q 028546           69 ERFRSLIPSYIRDSS-VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG----DGKAKE  143 (207)
Q Consensus        69 ~~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~  143 (207)
                      ++|....... ...+ .+++|+|+.+..     ..|...+.+... +.|+++|+||+|+.+. ....+.+    ...+..
T Consensus        57 ~~~~~~l~~i-~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~  128 (365)
T PRK13796         57 DDFLKLLNGI-GDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKE  128 (365)
T ss_pred             HHHHHHHHhh-cccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHh
Confidence            3455544433 4445 999999997632     223333433332 5789999999999643 2223333    233444


Q ss_pred             hCC---eEEEEecCCCCChHHHHHHHHHHc
Q 028546          144 FGV---MFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       144 ~~~---~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      .++   .++.+||+++.|++++++.|.+..
T Consensus       129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~  158 (365)
T PRK13796        129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR  158 (365)
T ss_pred             cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            565   689999999999999999998764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.41  E-value=4.2e-07  Score=70.47  Aligned_cols=101  Identities=22%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             cCChh-hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028546           65 TAGQE-RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE  143 (207)
Q Consensus        65 ~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  143 (207)
                      .||+. +-.......+..+|++|+|+|+..+.+...  .++..+..    +.|+++|+||+|+.+.... ..... ....
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~~-~~~~~-~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEVT-KKWIE-YFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHHH-HHHHH-HHHH
Confidence            45543 223345566789999999999986543322  11222211    4789999999998543111 11111 1223


Q ss_pred             hCCeEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          144 FGVMFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       144 ~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      .+.+++.+|+.++.|++++.+.+.+.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            357789999999999999999998887543

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=7.4e-07  Score=73.42  Aligned_cols=119  Identities=22%  Similarity=0.254  Sum_probs=85.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-----C-----------CccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----D-----------TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      +.-+|.+..+..+||||+=++.+...-     .           ....+..++.+......+....+++.++||||+-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            346788999999999999998762111     0           001123345555555555555689999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      .-.+...++--|++|+|+++..+-.-+...-|.+.-+ +   ++|.+.++||+|.....
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r-y---~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR-Y---NVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh-c---CCCeEEEEehhhhcCCC
Confidence            9999999999999999999986544455555655443 3   59999999999975543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.38  E-value=9.6e-07  Score=69.99  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCc-ccc---ccce--eeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTT-YQA---TIGI--DFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (207)
                      ++|+|.+|+|||||||+|++.....+ ..+   ..+.  +.....+.+.+.   ..++||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            78999999999999999997654211 111   1111  112223344432   2489999965543

>PRK14974 cell division protein FtsY; Provisional

Probab=98.38  E-value=6.2e-07  Score=70.56  Aligned_cols=94  Identities=17%  Similarity=0.115  Sum_probs=55.8

Q ss_pred             EEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.++||+|......    ....+  ..+.|.++||+|+........   ....+....   .+--+++||.|....  
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~---~~~giIlTKlD~~~~--  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV---GIDGVILTKVDADAK--  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC---CCCEEEEeeecCCCC--
Confidence            5699999999543211    11111  235789999999975432222   122222221   234788999996322  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546          132 VSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                        .-.+...+...+.|+.+++  +|.+++++.
T Consensus       295 --~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        295 --GGAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence              2233445556788888887  788887664

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.36  E-value=1.9e-07  Score=68.40  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=73.8

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChH----------HHHHHHHHHHHHHHh-cCCCCeEEEEEeCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ----------SFLNTSRWIEEVRTE-RGGDVIIVLVGNKTD  125 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D  125 (207)
                      .+.+.+.|.+|+..-+..|...+.++..++|++.+++.+          .++.-+.++.-+... .-.+.++|+++||.|
T Consensus       198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD  277 (359)
T KOG0085|consen  198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD  277 (359)
T ss_pred             hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence            356778899998888888888888888888877766422          222222222222211 124678999999999


Q ss_pred             CCCCCC----------------CCHHHHHHHHHHh----CC------eEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          126 LVDKRQ----------------VSIEEGDGKAKEF----GV------MFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       126 ~~~~~~----------------~~~~~~~~~~~~~----~~------~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      +.++..                -..+.++.+..++    +.      --.++.|.+.+|+..+|..+.+.+..
T Consensus       278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            876532                1233344443332    21      12467788889999999998887653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.35  E-value=2e-06  Score=65.99  Aligned_cols=95  Identities=16%  Similarity=0.023  Sum_probs=56.5

Q ss_pred             EEEEEEEecCChhhhccccc-------cc-----cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546           57 TVRLQLWDTAGQERFRSLIP-------SY-----IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT  124 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  124 (207)
                      .+.+.++||||.........       ..     -..+|.+++|+|++..  .+.+. ....+.+..   .+--+|+||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~---~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV---GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC---CCCEEEEEcc
Confidence            36899999999653222111       11     1248999999999743  22222 223333222   2357899999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546          125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      |....    .-.+.......+.|+.+++  +|++++++.
T Consensus       228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            96332    2233445556688888887  777766553

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.34  E-value=1.3e-06  Score=68.66  Aligned_cols=56  Identities=29%  Similarity=0.408  Sum_probs=41.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      ..++++|+|-|++|||||||+|.+.... ....|  +++.....+.+..   .+.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCc
Confidence            3588999999999999999999988773 33344  4444444444555   4889999994

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.27  E-value=4.4e-06  Score=64.03  Aligned_cols=109  Identities=20%  Similarity=0.241  Sum_probs=79.2

Q ss_pred             cccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (207)
                      .+.+.-+.+.|-+++|+.+.+|+ +...+.+++......   ++..++|+||+|+.++.+....+.......++++++.+
T Consensus        71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            34444556788899999998876 344455555544433   46677889999998776655455666777789999999


Q ss_pred             ecCCCCChHHHHHHHHHHcCCCccCcccccccc
Q 028546          152 SAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM  184 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~  184 (207)
                      |++++++++++..+|...+.-.-.++--.++..
T Consensus       148 s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSL  180 (301)
T COG1162         148 SAKNGDGLEELAELLAGKITVLLGQSGVGKSTL  180 (301)
T ss_pred             cCcCcccHHHHHHHhcCCeEEEECCCCCcHHHH
Confidence            999999999999999888776666665555433

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.26  E-value=6.5e-06  Score=66.69  Aligned_cols=64  Identities=13%  Similarity=0.090  Sum_probs=38.6

Q ss_pred             EEEEEEEecCChhhhcccc----ccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLI----PSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      .+.+.|+||+|........    ..+  ..+.+-++||+|+..++....+.   ..+...   -.+.-+|+||.|.
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~---~~~~g~IlTKlD~  251 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS---VDVGSVIITKLDG  251 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc---cCCcEEEEECccC
Confidence            4689999999954332211    111  23578899999997543333322   222222   1356899999996

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.25  E-value=2.2e-06  Score=64.93  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -.++++|.+|+|||||+|++.+...
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~  145 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVK  145 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhh
Confidence            4688999999999999999997643

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=2.9e-05  Score=57.76  Aligned_cols=158  Identities=18%  Similarity=0.256  Sum_probs=100.5

Q ss_pred             ceeEEEEcCCCC--CHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe--EEEEEEEecCChhhhccccccccccCCE
Q 028546            9 KYKLVFLGDQSV--GKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         9 ~~~i~v~G~~~s--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +..++|+|-.|+  ||.+|+.+|....|..+......+.+..+++.-...  .+.+.+.-.. .+.+.. ......-.-+
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lp-n~~~a~pl~a   81 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLP-NAEIAEPLQA   81 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccC-Ccccccceee
Confidence            356789999998  999999999999887776666666677776532221  1233332211 112211 1222234568


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC--------------CC-------------------
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK--------------RQ-------------------  131 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--------------~~-------------------  131 (207)
                      +++|||.+...++..++.|+.......-  -..+.++||.|....              ..                   
T Consensus        82 ~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   82 FVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            8999999999999999999874322111  224677899985421              00                   


Q ss_pred             -----------CCHHHHHHHHHHhCCeEEEEecCCC------------CChHHHHHHHHHHc
Q 028546          132 -----------VSIEEGDGKAKEFGVMFIETSAKAG------------FNIKPLFRKIAAAL  170 (207)
Q Consensus       132 -----------~~~~~~~~~~~~~~~~~~~~s~~~~------------~~i~~~~~~l~~~~  170 (207)
                                 ........++...++.+++.++.+.            .|++.+|..|...+
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                       0123345566677899999888443            37999999887754

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.23  E-value=5.6e-06  Score=47.12  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=32.5

Q ss_pred             cCCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           81 DSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        81 ~~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      -.++++|++|+++  +.+.+.+..++..++..+. +.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            3689999999985  5678888999999999886 589999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.23  E-value=2.4e-06  Score=67.86  Aligned_cols=55  Identities=25%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC-ccccc-------cceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDT-TYQAT-------IGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      -++|+|++|+|||||||+|++..... ...+.       ++.+.  ..+.+.+..   .++||||...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~--~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHV--ELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCcee--EEEECCCCc---EEEeCCCccc
Confidence            37999999999999999999764321 11222       22222  333343322   6889999643

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.21  E-value=2.5e-06  Score=65.37  Aligned_cols=58  Identities=19%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      -.+++|+.|+|||||+|+|.+..-      +....++.-++.....+.+.+.+   .++||||...+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence            467889999999999999986432      22222222233344555665433   57799996543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.20  E-value=4.7e-06  Score=60.29  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=68.1

Q ss_pred             EEEEEecCChhhhcccc---cccc---cc---CCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           59 RLQLWDTAGQERFRSLI---PSYI---RD---SSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~---~~~~---~~---~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      .+.++|+||+-...+-.   +.++   ++   --+++|+.|..= .++...+...+..+..-..-.+|-|=|++|+|+..
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            58899999976543321   1111   11   125566666541 11222222222222222222588899999999864


Q ss_pred             CCC--------------------CC---------HHHHHHHHHHhCC-eEEEEecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546          129 KRQ--------------------VS---------IEEGDGKAKEFGV-MFIETSAKAGFNIKPLFRKIAAALPGMETLSS  178 (207)
Q Consensus       129 ~~~--------------------~~---------~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~  178 (207)
                      ...                    ..         ...+..+...+++ .+++....+-++++.++..|-..++-.+...+
T Consensus       179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed~E~  258 (273)
T KOG1534|consen  179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGEDLEP  258 (273)
T ss_pred             hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccccCc
Confidence            411                    00         0111222233444 68899999999999999998888776655555


Q ss_pred             ccc
Q 028546          179 TKQ  181 (207)
Q Consensus       179 ~~~  181 (207)
                      +.+
T Consensus       259 k~~  261 (273)
T KOG1534|consen  259 KEP  261 (273)
T ss_pred             cCC
Confidence            444

>PRK13695 putative NTPase; Provisional

Probab=98.18  E-value=6.5e-05  Score=53.85  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ++|+++|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998653

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=98.17  E-value=0.00014  Score=51.23  Aligned_cols=146  Identities=9%  Similarity=0.062  Sum_probs=105.6

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (207)
                      +.++......|++||..+.++..|..++....-.                      .++.+.-....+.. ......=..
T Consensus         8 ~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------------------~~l~Vh~a~sLPLp-~e~~~lRpr   64 (176)
T PF11111_consen    8 DKLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------------------FKLKVHLAKSLPLP-SENNNLRPR   64 (176)
T ss_pred             ccCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------------------eeEEEEEeccCCCc-ccccCCCce
Confidence            4566677789999999999999999999863210                      11111111111100 001111246


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      .|.++|++|.....++..++.-+..+...+-.. -++++++-....+...+..+++.+++..+.++++.+.-...++...
T Consensus        65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             eEEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            799999999999999999988888775544322 2667777777767788999999999999999999999999989888


Q ss_pred             HHHHHHHHcC
Q 028546          162 LFRKIAAALP  171 (207)
Q Consensus       162 ~~~~l~~~~~  171 (207)
                      +-+.|.+.++
T Consensus       144 lAqRLL~~lq  153 (176)
T PF11111_consen  144 LAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHH
Confidence            8888887764

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.16  E-value=5.2e-06  Score=66.38  Aligned_cols=55  Identities=25%  Similarity=0.356  Sum_probs=37.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      .+++++|.+|+|||||+|++++...      .....+.++.+  ...+.+++   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCC
Confidence            4899999999999999999997532      22333444433  33344433   35799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=9.5e-06  Score=72.70  Aligned_cols=117  Identities=18%  Similarity=0.147  Sum_probs=67.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeee-EEEEEECCeEEEEEEEecCChh--------hhccccccc---
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFL-SKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSY---   78 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~---   78 (207)
                      -+|+|++|+||||++.. .+.+|+-.. ....+.... ...++.--. -.-.++||.|.-        .....|..+   
T Consensus       128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~-deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l  205 (1188)
T COG3523         128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFT-DEAVLIDTAGRYITQDSADEVDRAEWLGFLGL  205 (1188)
T ss_pred             eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccc-cceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence            47999999999999863 333332111 001111100 111111111 156788999821        122233333   


Q ss_pred             ------cccCCEEEEEEECCC-----hHH----HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           79 ------IRDSSVAVIVYDVAN-----RQS----FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        79 ------~~~~d~~ilv~d~~~-----~~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                            .+-.+++|+.+|+.+     +..    ...+...++++.....-..||+|++||.|+..-.
T Consensus       206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF  272 (1188)
T COG3523         206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGF  272 (1188)
T ss_pred             HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccH
Confidence                  345799999999974     111    2234555666777777789999999999987543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.14  E-value=3.4e-05  Score=55.23  Aligned_cols=84  Identities=14%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             EEEEEEEecCChhhh----ccccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERF----RSLIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~----~~~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      .+.+.++|++|...+    ......+  ....+.+++|+|+.....   ...+...+....+   ...+|+||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            356889999996422    1111111  134899999999975332   2233344433322   356778999964332


Q ss_pred             CCCHHHHHHHHHHhCCeEEE
Q 028546          131 QVSIEEGDGKAKEFGVMFIE  150 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~  150 (207)
                      .    .+...+...++++..
T Consensus       156 g----~~~~~~~~~~~p~~~  171 (173)
T cd03115         156 G----AALSIRAVTGKPIKF  171 (173)
T ss_pred             c----hhhhhHHHHCcCeEe
Confidence            2    122255556666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=7e-06  Score=66.63  Aligned_cols=113  Identities=20%  Similarity=0.300  Sum_probs=77.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc------------CCCCCccc--cccceeeeEEEEEE----------------CCeEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY------------DKFDTTYQ--ATIGIDFLSKTMYL----------------EDRTVR   59 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~------------~~~~~~~~--~~~~~~~~~~~~~~----------------~~~~~~   59 (207)
                      -++.|+.+...|||||-..|+.            .+|..++.  ...++.+....+..                ++...-
T Consensus        20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL   99 (842)
T KOG0469|consen   20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL   99 (842)
T ss_pred             ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence            5788999999999999998872            23322222  12223333322221                234567


Q ss_pred             EEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      +.++|.||+-+|.+.....++-.|+.++|+|.-++--.++-.-+.+.+.++    +..++++||+|.
T Consensus       100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DR  162 (842)
T KOG0469|consen  100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDR  162 (842)
T ss_pred             EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhH
Confidence            899999999999999999999999999999998654444444444555554    334688999994

>PRK13796 GTPase YqeH; Provisional

Probab=98.13  E-value=4.7e-06  Score=66.74  Aligned_cols=55  Identities=25%  Similarity=0.339  Sum_probs=36.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      .++.++|.+++|||||+|+|++...      .....|++|.+.  ..+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCcc
Confidence            4799999999999999999985431      123334444433  33334432   4789999953

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=1.7e-05  Score=63.30  Aligned_cols=139  Identities=11%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC---ccccccceeee----------------EEEEEEC-----------CeEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDT---TYQATIGIDFL----------------SKTMYLE-----------DRTVR   59 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~----------------~~~~~~~-----------~~~~~   59 (207)
                      --++++|++|+||||++..|...-...   ......+.+.+                .......           -....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            468899999999999999885321100   00000000000                0000010           02347


Q ss_pred             EEEEecCChhhhcccc----ccc--cccCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCC
Q 028546           60 LQLWDTAGQERFRSLI----PSY--IRDSSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGD--VIIVLVGNKTDLVDKR  130 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~----~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~  130 (207)
                      +.++||+|........    ..+  .....-.+||++++. .+.+..+...+......-...  .+--+|++|.|...  
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC--
Confidence            8999999955332211    111  123456689999975 333333333333221100000  12367889999633  


Q ss_pred             CCCHHHHHHHHHHhCCeEEEEe
Q 028546          131 QVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        ..-.+...+...+.++.+++
T Consensus       296 --~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 --NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             --CccHHHHHHHHHCcCeEEEe
Confidence              23344556666777765554

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=98.11  E-value=0.0001  Score=53.07  Aligned_cols=85  Identities=21%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE  135 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (207)
                      ..+.+.++|+|+...  ......+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|+.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            357899999996432  233445688999999998874 4555666666655543   4678899999996322   234


Q ss_pred             HHHHHHHHhCCeEE
Q 028546          136 EGDGKAKEFGVMFI  149 (207)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (207)
                      +.+.....++++++
T Consensus       162 ~~~~~~~~~~~~vl  175 (179)
T cd03110         162 EIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHHcCCCeE
Confidence            55666677777654

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.05  E-value=1.1e-05  Score=62.59  Aligned_cols=59  Identities=24%  Similarity=0.189  Sum_probs=36.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc-c-----cccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY-Q-----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      -.++++|++|+|||||+|++++....... .     .+..+......+...+.   ..++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            56899999999999999999976543221 1     11112222233344332   258999997554

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.05  E-value=8.1e-05  Score=58.51  Aligned_cols=95  Identities=12%  Similarity=0.136  Sum_probs=51.4

Q ss_pred             EEEEEEecCChhhhcccccccc--------ccCCEEEEEEECCChHHHH-HHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLIPSYI--------RDSSVAVIVYDVANRQSFL-NTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      ....++++.|..........+.        -..+.+|.|+|+.+..... .......++...   +   ++++||+|+.+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D---~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---D---RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---C---EEEEeccccCC
Confidence            4678889988665444333221        1358899999997532211 111112223221   2   88999999876


Q ss_pred             CCCCCHHHHHHHHHHhC--CeEEEEecCCCCChHHHH
Q 028546          129 KRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~  163 (207)
                      +.    +.++...+.++  ++++.++ ........++
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            42    44555555554  4566554 2223444444

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.04  E-value=1.3e-05  Score=60.38  Aligned_cols=119  Identities=15%  Similarity=0.312  Sum_probs=71.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc----ccceeeeEEEEEECCeEEEEEEEecCChhh-------hcc---
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA----TIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS---   73 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~---   73 (207)
                      -.++|+.+|..|.|||||+++|+.-.+..+..+    ..............+..+++++.||.|..+       |..   
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd  120 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD  120 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence            358999999999999999999998888544332    222222222333456667899999998322       111   


Q ss_pred             ----ccccc-------------c--ccCCEEEEEEECCChHHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           74 ----LIPSY-------------I--RDSSVAVIVYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        74 ----~~~~~-------------~--~~~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                          ....|             +  ...++.+|.+..+. .++..+.. .+..+..    ++.+|-++.|.|.....+
T Consensus       121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDtisK~e  193 (406)
T KOG3859|consen  121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADTISKEE  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhhhhHHH
Confidence                01111             1  24567777777774 33433321 1222322    456777888999765444

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.02  E-value=3.3e-05  Score=56.98  Aligned_cols=63  Identities=30%  Similarity=0.356  Sum_probs=41.0

Q ss_pred             EEEEEEec-CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           58 VRLQLWDT-AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        58 ~~~~i~D~-~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      +.+.++|| +|.+.|..   ...+++|.+|.|+|.+. .++....+. ..+....+ -.++.+|+||.|-
T Consensus       134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg-~k~i~~V~NKv~e  197 (255)
T COG3640         134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELG-IKRIFVVLNKVDE  197 (255)
T ss_pred             CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence            35667777 45544433   33578999999999985 455554433 33333333 3789999999995

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=8.9e-05  Score=61.48  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=48.0

Q ss_pred             EEEEEEEecCChhhhccc-------cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRSL-------IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      .+.+.|+||+|.......       +... . ....++|++.+.  +...+...+..+...    .+.-+|+||.|... 
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~-  498 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG-  498 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc-
Confidence            368999999995432211       1111 1 234577777763  234444444444332    45679999999622 


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEe
Q 028546          130 RQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                         ....+.......+.++.+++
T Consensus       499 ---~lG~aLsv~~~~~LPI~yvt  518 (559)
T PRK12727        499 ---RFGSALSVVVDHQMPITWVT  518 (559)
T ss_pred             ---chhHHHHHHHHhCCCEEEEe
Confidence               23455666667788776554

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.01  E-value=3.2e-05  Score=53.95  Aligned_cols=58  Identities=14%  Similarity=0.107  Sum_probs=37.2

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      .+.+.|+||+|...   ....++..+|-+|++....-.+.+..++-  . +....     =++++||+|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~-~~~~~-----~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--G-IMEIA-----DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--h-Hhhhc-----CEEEEeCCC
Confidence            46899999998542   22347889999999998873333222221  2 22222     288999997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.99  E-value=0.00013  Score=57.27  Aligned_cols=97  Identities=24%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             EEEEEEecCChhhhccccccc--------cccCCEEEEEEECCChHHHHH-H-HHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLIPSY--------IRDSSVAVIVYDVANRQSFLN-T-SRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ....++++.|..........+        .-..|++|-|+|+.+-..... + .....++...      =++++||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence            567888888855542222222        124578999999985322211 1 2222233221      28999999998


Q ss_pred             CCCCCCHHHHHHHHHHhC--CeEEEEecCCCCChHHHH
Q 028546          128 DKRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~  163 (207)
                      ++.+  .+..+....+++  .+++.++. .+....+++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            7764  455566666665  46777777 333443333

>PRK00098 GTPase RsgA; Reviewed

Probab=97.97  E-value=1.7e-05  Score=61.84  Aligned_cols=58  Identities=22%  Similarity=0.147  Sum_probs=35.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccc---cc--eeeeEEEEEECCeEEEEEEEecCChhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY-QAT---IG--IDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~---~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      ..++++|++|+|||||+|+|.+....... .+.   .+  ++.....+.+.+.   ..++||||...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            46889999999999999999876543221 111   11  1112223334432   37889999643

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.93  E-value=5.3e-05  Score=54.00  Aligned_cols=135  Identities=17%  Similarity=0.249  Sum_probs=63.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEec-CChh--------------------
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE--------------------   69 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~--------------------   69 (207)
                      +|.+.|++|+|||||+.+++..--.. ..+..+  +.......++..+-+.+.|. .|..                    
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999987432100 011111  11222223333344555555 2211                    


Q ss_pred             --hhccc----cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 028546           70 --RFRSL----IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT-DLVDKRQVSIEEGDGKAK  142 (207)
Q Consensus        70 --~~~~~----~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~  142 (207)
                        .+...    ....+..+|  ++|+|--.+-.+. ...+.+.+......++|++.++.+. +.        .....+..
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~  146 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR  146 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence              11111    111123444  7777776432111 2334444555555578888888766 31        12344555


Q ss_pred             HhCCeEEEEecCCCCCh
Q 028546          143 EFGVMFIETSAKAGFNI  159 (207)
Q Consensus       143 ~~~~~~~~~s~~~~~~i  159 (207)
                      ..+..++.++..+.+.+
T Consensus       147 ~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  147 RPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTSEEEE--TTTCCCH
T ss_pred             CCCcEEEEeChhHHhhH
Confidence            66788888877766554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=97.92  E-value=0.00037  Score=57.54  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             EEEEEEecCChh-------------hhccccccccccCCEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546           58 VRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVIVYDVANRQS-FLNTSRWIEEVRTERGGDVIIVLVGNK  123 (207)
Q Consensus        58 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK  123 (207)
                      .+..++|.||.-             ..-.+...|+.+.+++|+|+--...+. -..+..+...+   .+...-.|+|++|
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~---DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQM---DPHGRRTIFVLTK  488 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhc---CCCCCeeEEEEee
Confidence            378899999922             223355678899999999985432211 11122222222   2335568999999


Q ss_pred             CCCCCCCCCCHHHHHHHHH
Q 028546          124 TDLVDKRQVSIEEGDGKAK  142 (207)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~  142 (207)
                      .|+.+..-...+.++++..
T Consensus       489 VDlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             cchhhhccCCHHHHHHHHh
Confidence            9998887888888877765

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.92  E-value=3.1e-05  Score=63.20  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=47.8

Q ss_pred             EEEEEEecCChhhhcccc----cc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLI----PS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      ..+.++||+|........    ..  .+..+|.+++|+|++...   ........+....   ...-+|+||.|...  .
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l---~i~gvIlTKlD~~a--~  247 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV---GIGGIIITKLDGTA--K  247 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC---CCCEEEEecccCCC--c
Confidence            378999999965432211    11  134689999999997642   2222223332221   12467889999521  1


Q ss_pred             CCHHHHHHHHHHhCCeEEEEec
Q 028546          132 VSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                        .-.+.......+.|+.+++.
T Consensus       248 --~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        248 --GGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             --ccHHHHHHHHHCcCEEEEec
Confidence              22334455566776655543

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.91  E-value=2.3e-05  Score=56.44  Aligned_cols=81  Identities=26%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             EEEEEEecCChhhhcccc--cc---ccccCCEEEEEEECCChHHHHHHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLI--PS---YIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~--~~---~~~~~d~~ilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      ....++++.|........  ..   ..-..+.+|.|+|+.+-......... ..++. ..  +   ++++||+|+.++.+
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~-~A--D---vIvlnK~D~~~~~~  158 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA-FA--D---VIVLNKIDLVSDEQ  158 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC-T---S---EEEEE-GGGHHHH-
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch-hc--C---EEEEeccccCChhh
Confidence            567888888855443330  00   02356899999999764222333222 22232 11  2   89999999876552


Q ss_pred             CCHHHHHHHHHHhC
Q 028546          132 VSIEEGDGKAKEFG  145 (207)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (207)
                       ..+..++..+..+
T Consensus       159 -~i~~~~~~ir~ln  171 (178)
T PF02492_consen  159 -KIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             -HHHHHHHHHHHHC
Confidence             2244444555443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.89  E-value=2.4e-05  Score=62.58  Aligned_cols=85  Identities=15%  Similarity=0.017  Sum_probs=49.0

Q ss_pred             EEEEEEecCChhhhcc----cccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.|+||+|......    .+..++  ...+.++||+|++..  ...+...+..+...    .+--+|++|.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCCC--
Confidence            5799999999543211    112222  235778999998632  23333333444321    234688999996432  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        .-.+...+...++|+.+++
T Consensus       393 --~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              3345566667788765554

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=8.8e-05  Score=59.12  Aligned_cols=85  Identities=14%  Similarity=0.118  Sum_probs=48.3

Q ss_pred             EEEEEEecCChhhhcc----cccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.|+||+|......    ....+.  -..+.+++|.+++  .....+...+..+..    -.+--+|+||.|...   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence            6899999999643222    112222  2456777888775  223333333333221    123478899999532   


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                       ..-.+...+...+.|+.+++
T Consensus       357 -~~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        357 -RIGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             -CccHHHHHHHHHCCCEEEEe
Confidence             23445666677788776655

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.82  E-value=3.1e-05  Score=56.62  Aligned_cols=85  Identities=19%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             EEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.++||+|......    .+..+  ....+-+++|.+++...  +.+... .......+   +--++++|.|....  
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~-~~~~~~~~---~~~lIlTKlDet~~--  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQA-LAFYEAFG---IDGLILTKLDETAR--  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHH-HHHHHHSS---TCEEEEESTTSSST--
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHH-HHHhhccc---CceEEEEeecCCCC--
Confidence            4699999999543222    11111  12578899999998532  333322 22222222   23577999996322  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        .-.+...+...+.++-.++
T Consensus       156 --~G~~l~~~~~~~~Pi~~it  174 (196)
T PF00448_consen  156 --LGALLSLAYESGLPISYIT  174 (196)
T ss_dssp             --THHHHHHHHHHTSEEEEEE
T ss_pred             --cccceeHHHHhCCCeEEEE
Confidence              3445666777888876655

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK10867 signal recognition particle protein; Provisional

Probab=97.78  E-value=0.0003  Score=57.49  Aligned_cols=87  Identities=11%  Similarity=0.004  Sum_probs=48.2

Q ss_pred             EEEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      .+.+.|+||+|......    ....+  .-..+.+++|+|+...   +........+....   ...-+|+||.|-. .+
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~-~r  255 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGD-AR  255 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCc-cc
Confidence            36799999999543211    11111  1257788999998753   23333333343322   1246788999952 21


Q ss_pred             CCCHHHHHHHHHHhCCeEEEEec
Q 028546          131 QVSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                         .-.+.......+.|+.++..
T Consensus       256 ---gG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        256 ---GGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               12245556667777665543

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.78  E-value=0.00013  Score=50.25  Aligned_cols=105  Identities=14%  Similarity=0.125  Sum_probs=60.6

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC
Q 028546           14 FLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN   93 (207)
Q Consensus        14 v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~   93 (207)
                      .-|..|+||||+--.+-..-.. ...+..-.+..   .......+.+.++|+|+..  .......+..+|.++++.+.+-
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            3478899999987655321100 00000001100   0001111689999998742  3334567889999999999874


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           94 RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        94 ~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                       .++......++.+.... ...++.+|+|+.+.
T Consensus        79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence             45555555555554433 24568899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.75  E-value=0.00024  Score=58.06  Aligned_cols=85  Identities=14%  Similarity=0.091  Sum_probs=48.1

Q ss_pred             EEEEEEecCChhhhc----cccccccc---cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      +.+.|+||+|.....    .....++.   ...-+++|++++..  ...+...+..+...    .+--+++||.|.... 
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~~~~vI~TKlDet~~-  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----PLDGLIFTKLDETSS-  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----CCCEEEEeccccccc-
Confidence            579999999954322    12222333   33467888888732  23333333333211    123688999996322 


Q ss_pred             CCCHHHHHHHHHHhCCeEEEEe
Q 028546          131 QVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                         ...+.......+.++.+++
T Consensus       373 ---~G~i~~~~~~~~lPv~yit  391 (424)
T PRK05703        373 ---LGSILSLLIESGLPISYLT  391 (424)
T ss_pred             ---ccHHHHHHHHHCCCEEEEe
Confidence               3345666777788776554

>TIGR00959 ffh signal recognition particle protein

Probab=97.70  E-value=6.7e-05  Score=61.15  Aligned_cols=87  Identities=14%  Similarity=0.038  Sum_probs=49.2

Q ss_pred             EEEEEEEecCChhhhccc----ccc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRSL----IPS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~----~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      .+.+.|+||||.......    ...  ..-..|.++||+|+...+   ........+....   ...-+|+||.|-... 
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~-  254 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR-  254 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc-
Confidence            357999999995332111    111  123578899999997543   3333333343322   224677999995211 


Q ss_pred             CCCHHHHHHHHHHhCCeEEEEec
Q 028546          131 QVSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                         .-.+.......+.|+.++..
T Consensus       255 ---~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       255 ---GGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             ---ccHHHHHHHHHCcCEEEEeC
Confidence               22255566667777665543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=0.00018  Score=58.19  Aligned_cols=134  Identities=21%  Similarity=0.202  Sum_probs=69.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC-------C-----CCccc----------cccceeeeEEE-E-----EECCeEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDK-------F-----DTTYQ----------ATIGIDFLSKT-M-----YLEDRTVRL   60 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~-------~-----~~~~~----------~~~~~~~~~~~-~-----~~~~~~~~~   60 (207)
                      ..-++++|++|+||||++..|....       +     +..+.          ...+....... .     ......+.+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~  302 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL  302 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence            3458899999999999998875311       1     00000          00111111100 0     001124578


Q ss_pred             EEEecCChhhh----ccccccccc-----cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           61 QLWDTAGQERF----RSLIPSYIR-----DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        61 ~i~D~~G~~~~----~~~~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      .++||+|....    ...+..++.     ...-.+||+|++...  +.+...+..+..    --+--+|++|.|-...  
T Consensus       303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~--  374 (432)
T PRK12724        303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF--  374 (432)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence            99999995421    112222222     234678999998532  333333333321    1234788999995322  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        .-.+...+...+.|+.+++
T Consensus       375 --~G~il~i~~~~~lPI~ylt  393 (432)
T PRK12724        375 --LGSFLELADTYSKSFTYLS  393 (432)
T ss_pred             --ccHHHHHHHHHCCCEEEEe
Confidence              3335556667787765554

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.68  E-value=0.00026  Score=46.12  Aligned_cols=82  Identities=15%  Similarity=0.161  Sum_probs=49.3

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           12 LVFLG-DQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        12 i~v~G-~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      |+|.| ..|+||||+...+-..-.. ...+..-.+       .+.. +.+.++|+|+....  .....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-------~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-------LDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-------CCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence            56676 5689999988765422111 111111111       1211 68999999985432  23366778999999998


Q ss_pred             CCChHHHHHHHHHHH
Q 028546           91 VANRQSFLNTSRWIE  105 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~  105 (207)
                      .+. .++..+.++++
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            864 55666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.67  E-value=8.9e-05  Score=56.90  Aligned_cols=59  Identities=20%  Similarity=0.328  Sum_probs=38.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC------CCccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      .+++++|+|-|++|||||+|++.....      .....++.+..+.... .+... -.+.++||||.
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~i-ri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERI-RISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhhe-EeccC-CceEEecCCCc
Confidence            468999999999999999998864333      2233344444443332 22222 25788899993

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.62  E-value=0.0012  Score=52.91  Aligned_cols=108  Identities=16%  Similarity=0.064  Sum_probs=60.7

Q ss_pred             EEEEEEecCChhhhcc----cccccccc--CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LIPSYIRD--SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.++||.|...+..    ....++..  ..-+.||++++.  ....+++.+..++..    ..--++++|.|..    
T Consensus       282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~----~i~~~I~TKlDET----  351 (407)
T COG1419         282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLF----PIDGLIFTKLDET----  351 (407)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccC----CcceeEEEccccc----
Confidence            5799999999654333    23333333  345677888873  356667666666543    2236888999952    


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe--cCCCCChHH-HHHHHHHHcCCCcc
Q 028546          132 VSIEEGDGKAKEFGVMFIETS--AKAGFNIKP-LFRKIAAALPGMET  175 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s--~~~~~~i~~-~~~~l~~~~~~~~~  175 (207)
                      ...-.....+...+.++-+++  ..=.+++.. --+||++.+.+...
T Consensus       352 ~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~  398 (407)
T COG1419         352 TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA  398 (407)
T ss_pred             CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence            234445555666666654443  222333322 23456666554433

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.00028  Score=57.32  Aligned_cols=85  Identities=11%  Similarity=0.005  Sum_probs=47.6

Q ss_pred             EEEEEEecCChhhhc----ccccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFR----SLIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~----~~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      ..+.++||+|.....    .....+.  ...+-.+||+|++..  .+.+..++..+..    --+--+|++|.|....  
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~----~~~~~~I~TKlDEt~~--  341 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG----HGIHGCIITKVDEAAS--  341 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeeeCCCC--
Confidence            468999999954321    1112221  224567899999832  2333333333322    1234688999996332  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        .-.+...+...++++.+++
T Consensus       342 --~G~~l~~~~~~~lPi~yvt  360 (420)
T PRK14721        342 --LGIALDAVIRRKLVLHYVT  360 (420)
T ss_pred             --ccHHHHHHHHhCCCEEEEE
Confidence              3344556667788776655

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.59  E-value=0.00063  Score=54.83  Aligned_cols=86  Identities=9%  Similarity=-0.022  Sum_probs=49.2

Q ss_pred             EEEEEEEecCChhhhcc----cccccccc--CC-EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRS----LIPSYIRD--SS-VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      .+.+.++||+|......    ....++..  .+ -.+||+|++..  ...+.+.+..+...    .+--++++|.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCCc
Confidence            36799999999543221    11222222  23 58899999853  34444444443321    234788999995322


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEe
Q 028546          130 RQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                          .-.+...+...+.|+.+++
T Consensus       328 ----~G~~l~~~~~~~~Pi~yit  346 (388)
T PRK12723        328 ----VGNLISLIYEMRKEVSYVT  346 (388)
T ss_pred             ----chHHHHHHHHHCCCEEEEe
Confidence                3344556667777765554

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.58  E-value=0.00044  Score=53.00  Aligned_cols=86  Identities=15%  Similarity=0.011  Sum_probs=49.6

Q ss_pred             EEEEEEEecCChhhhcc----cccccc--ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRS----LIPSYI--RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      .+.+.++||+|......    .+..++  ...+-++||+|++..  .+.+..++..+..    -.+--++++|.|.... 
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~-  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS-  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCC-
Confidence            36899999999653211    111121  245678999998732  2333333333332    1334788999996432 


Q ss_pred             CCCHHHHHHHHHHhCCeEEEEe
Q 028546          131 QVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                         .-.+...+...+.|+..++
T Consensus       227 ---~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        227 ---SGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             ---ccHHHHHHHHHCcCEEEEe
Confidence               3344556667787776554

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.57  E-value=7.8e-05  Score=43.54  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -.+|.|+.|||||||++++..--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999886433

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.55  E-value=0.00068  Score=43.08  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=43.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-cccccccCCEEEEEEE
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVIVYD   90 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~ilv~d   90 (207)
                      +++.|..|+||||+...+...--... .+.         ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-CeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            67889999999999987764321100 011         1111    6889999975432221 1455678899999998


Q ss_pred             CCC
Q 028546           91 VAN   93 (207)
Q Consensus        91 ~~~   93 (207)
                      ...
T Consensus        68 ~~~   70 (99)
T cd01983          68 PEA   70 (99)
T ss_pred             Cch
Confidence            875

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.54  E-value=0.00071  Score=46.25  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=22.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .-.+++.|++|+|||+|++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            35689999999999999999887643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.52  E-value=0.00053  Score=59.49  Aligned_cols=87  Identities=14%  Similarity=0.101  Sum_probs=48.1

Q ss_pred             EEEEEEecCChhhhcc----ccccc--cccCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      +.+.|+||+|......    .....  ....+-.+||+|++. .+.+..+.   ..+..... -.+--+|++|.|.... 
T Consensus       264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~-~~i~glIlTKLDEt~~-  338 (767)
T PRK14723        264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAG-EDVDGCIITKLDEATH-  338 (767)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhccc-CCCCEEEEeccCCCCC-
Confidence            4799999999432111    11111  234567899999974 23333333   33322110 0134688999996332 


Q ss_pred             CCCHHHHHHHHHHhCCeEEEEe
Q 028546          131 QVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                         .-.+.......++++.+++
T Consensus       339 ---~G~iL~i~~~~~lPI~yit  357 (767)
T PRK14723        339 ---LGPALDTVIRHRLPVHYVS  357 (767)
T ss_pred             ---ccHHHHHHHHHCCCeEEEe
Confidence               3344556667788776655

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.50  E-value=0.0014  Score=52.18  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=52.6

Q ss_pred             EEEEEEecCChhhhccccccc-------cccCCEEEEEEECCChHH--H-------H-------------HHH-HHHHHH
Q 028546           58 VRLQLWDTAGQERFRSLIPSY-------IRDSSVAVIVYDVANRQS--F-------L-------------NTS-RWIEEV  107 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~-------~~~~d~~ilv~d~~~~~s--~-------~-------------~~~-~~~~~i  107 (207)
                      ....++++.|..........+       .-..|++|.|+|+.+-..  +       .             .+. .+..++
T Consensus        93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi  172 (341)
T TIGR02475        93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL  172 (341)
T ss_pred             CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence            467888999865543333222       124678999999974211  0       0             001 112233


Q ss_pred             HHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hC-C-eEEEEecCCCCChHHHHH
Q 028546          108 RTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FG-V-MFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       108 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~-~~~~~s~~~~~~i~~~~~  164 (207)
                      ...      =++++||+|+.++.++  +..+...+. .+ . +++.+. ........+++
T Consensus       173 ~~A------D~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       173 ACA------DLVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             HhC------CEEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence            221      2899999999766543  334444554 33 2 455554 34455666655

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.48  E-value=0.00046  Score=57.04  Aligned_cols=85  Identities=11%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             EEEEEEecCChhhhccc---ccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSL---IPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~---~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      ..+.++||+|.......   ....+..   ..-.+||+|++..  ...+.+....+..    ..+.-+|+||.|...   
T Consensus       335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~---  405 (484)
T PRK06995        335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA---  405 (484)
T ss_pred             CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc---
Confidence            36889999994322111   0111111   2337889999742  2333333333322    234467889999532   


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                       ..-.+......+++++.+++
T Consensus       406 -~~G~~l~i~~~~~lPI~yvt  425 (484)
T PRK06995        406 -SLGGALDVVIRYKLPLHYVS  425 (484)
T ss_pred             -cchHHHHHHHHHCCCeEEEe
Confidence             23445666777788776665

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.47  E-value=0.00016  Score=59.00  Aligned_cols=53  Identities=26%  Similarity=0.338  Sum_probs=40.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      +.|.+||=|++||||+||+|.+.+.. .+..|+.+-++.  ++.+..   .+.+-||||
T Consensus       315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ--Ti~ls~---~v~LCDCPG  368 (562)
T KOG1424|consen  315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ--TIFLSP---SVCLCDCPG  368 (562)
T ss_pred             eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE--EEEcCC---CceecCCCC
Confidence            88999999999999999999988763 455566665543  333444   577889999

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.46  E-value=0.0001  Score=52.98  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988755

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.44  E-value=0.00012  Score=49.09  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988654

...

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.43  E-value=0.00013  Score=57.80  Aligned_cols=58  Identities=21%  Similarity=0.330  Sum_probs=42.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      ...+++.|+|-|++||||+||+|...+.... ....|++.....+..+.   .+.|+|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence            3459999999999999999999998776322 23334444455555555   7889999993

>PRK08118 topology modulation protein; Reviewed

Probab=97.43  E-value=0.00012  Score=52.12  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+|+|+|++|||||||...+..
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998763

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.43  E-value=0.00092  Score=43.82  Aligned_cols=62  Identities=18%  Similarity=0.085  Sum_probs=42.6

Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCeEEEEEeC
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNK  123 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK  123 (207)
                      .+.++|+|+....  .....+..+|.++++.+.+- .+...+..+++.+...... ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            7899999875432  23456788999999998774 5666677777766655432 3456777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.42  E-value=0.00043  Score=54.78  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=36.3

Q ss_pred             eEEEEEEEecCChhhhcccc-ccc-----cccCCEEEEEEECCChHHHHHHHHHHHHH
Q 028546           56 RTVRLQLWDTAGQERFRSLI-PSY-----IRDSSVAVIVYDVANRQSFLNTSRWIEEV  107 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~-~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i  107 (207)
                      ..+.+.|.||.|.+...... ...     .-+.|-+|||.|++-.+..+.+.+.+..-
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~  239 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET  239 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence            45789999999966433211 111     34689999999999888777776666554

>PRK07261 topology modulation protein; Provisional

Probab=97.40  E-value=0.00014  Score=52.10  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+|+|+|++|||||||...+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998753

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.39  E-value=0.00013  Score=50.31  Aligned_cols=21  Identities=19%  Similarity=0.477  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+++|+||||||||+..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998743

...

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.38  E-value=0.00034  Score=50.09  Aligned_cols=45  Identities=36%  Similarity=0.367  Sum_probs=27.9

Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      |++++|+|+.++.+... ..+...+. ....+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCCH
Confidence            78999999987532211 11222211 11225899999999999654

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.32  E-value=0.0032  Score=45.31  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      =.++++|+.|+|||||++.+.+...
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3688999999999999998887643

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.31  E-value=0.00015  Score=51.39  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ||+|+|.+++|||||++.|-..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.24  E-value=0.00025  Score=52.63  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++|+|+.|||||||++-+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999776543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.22  E-value=0.00034  Score=42.05  Aligned_cols=21  Identities=14%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |.+.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            688999999999999988755

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.22  E-value=0.012  Score=42.04  Aligned_cols=84  Identities=12%  Similarity=0.017  Sum_probs=51.2

Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD  138 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  138 (207)
                      .+.|+|+|+....  .....+..+|.+|++.+.+. .++..+..+++.+....  .....+++|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            6999999875332  23445678999999998875 44555555555555421  24567899999853221  122223


Q ss_pred             HHHHHhCCeEE
Q 028546          139 GKAKEFGVMFI  149 (207)
Q Consensus       139 ~~~~~~~~~~~  149 (207)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            34445566654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.20  E-value=0.00038  Score=54.89  Aligned_cols=94  Identities=23%  Similarity=0.135  Sum_probs=64.3

Q ss_pred             ecCChh-hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 028546           64 DTAGQE-RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK  142 (207)
Q Consensus        64 D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  142 (207)
                      +.||+. ++.......+..+|+++.|+|+-++.+...-     .+..... ..|.++|+||.|+.+... .......+..
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~   88 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK   88 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc-----cHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence            446643 5566677788999999999999987654431     1222222 355699999999965544 4555566666


Q ss_pred             HhCCeEEEEecCCCCChHHHHH
Q 028546          143 EFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       143 ~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +.+...+.+++..+.+...+..
T Consensus        89 ~~~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          89 EEGIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             cCCCccEEEEeecccCccchHH
Confidence            6677788888888887766664

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.18  E-value=0.00035  Score=47.80  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57899999999999999888774

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR00235 udk uridine kinase

Probab=97.15  E-value=0.00048  Score=50.82  Aligned_cols=27  Identities=15%  Similarity=0.160  Sum_probs=22.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++..-|+|+|++|||||||++.+.+.
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            455577999999999999999998753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14530 adenylate kinase; Provisional

Probab=97.09  E-value=0.0005  Score=51.07  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+|+|+|+|||||||+...|.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.07  E-value=0.00065  Score=49.78  Aligned_cols=24  Identities=13%  Similarity=-0.086  Sum_probs=20.9

Q ss_pred             EEecCCCCChHHHHHHHHHHcCCC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ++||++.+-+.|+++.+.++..+.
T Consensus       163 PTSALDPElv~EVL~vm~~LA~eG  186 (240)
T COG1126         163 PTSALDPELVGEVLDVMKDLAEEG  186 (240)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcC
Confidence            789999999999999999887654

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.06  E-value=0.00038  Score=49.78  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .-+++.||+|+|||||+.+|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            557888999999999999999775

>PRK06217 hypothetical protein; Validated

Probab=97.05  E-value=0.00056  Score=49.46  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+|+|+|.+|||||||..+|-.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.05  E-value=0.00075  Score=48.17  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ..-+.|+|.+|||||||+.+++..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999866

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.04  E-value=0.00046  Score=51.07  Aligned_cols=69  Identities=17%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             EEEEEEecCChhhhccc------cccccccCCEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           58 VRLQLWDTAGQERFRSL------IPSYIRDSSVAVIVYDVA------NRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~------~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      ....++|+|||-++...      +-.+++..|.-+.+++..      ++..|-.  .++..+..-..-..|-+=|+.|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence            36889999997653322      122344566555555554      3544433  222222222112466678889999


Q ss_pred             CCC
Q 028546          126 LVD  128 (207)
Q Consensus       126 ~~~  128 (207)
                      +..
T Consensus       175 l~~  177 (290)
T KOG1533|consen  175 LLK  177 (290)
T ss_pred             HHH
Confidence            753

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.04  E-value=0.00051  Score=46.24  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|.|.+||||||+.+.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988644

...

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.00036  Score=52.35  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccc----
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIR----   80 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~----   80 (207)
                      ..++..|++.|..+.  +|+|++.+...-... .++...++......-.+ ..--..+|+.+|......+..--++    
T Consensus        42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~-~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGGK--TTIILRCFDRDEPPK-PPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCCce--eEeehhhcCcccCCC-CCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            456788999998764  899998886653322 33333343333222222 2225688999886654443332222    


Q ss_pred             cCCEEEEEEECCChHHHHH-HHHHHHHHHHh-------------------------------------cCCCCeEEEEEe
Q 028546           81 DSSVAVIVYDVANRQSFLN-TSRWIEEVRTE-------------------------------------RGGDVIIVLVGN  122 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~-------------------------------------~~~~~p~ivv~n  122 (207)
                      +.-.+|+|.|++.+..+.. +...++.++..                                     .+-.+|+++|+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence            2236789999998765533 33333333311                                     113578999999


Q ss_pred             CCCCCCCCCCC-----HHHHHHHHHHhCCeEEEEecCCC
Q 028546          123 KTDLVDKRQVS-----IEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus       123 K~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      |.|.....+..     +.-.+..+..+|...+..|++..
T Consensus       199 KYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe  237 (363)
T KOG3929|consen  199 KYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKME  237 (363)
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhH
Confidence            99976554422     33345555566776666666544

>PRK03839 putative kinase; Provisional

Probab=97.04  E-value=0.00055  Score=49.30  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      +|+++|.|||||||+..++-
T Consensus         2 ~I~l~G~pGsGKsT~~~~La   21 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLA   21 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999875

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.03  E-value=0.00051  Score=55.25  Aligned_cols=62  Identities=19%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             EEEEEEecCChhhhcccccc------ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           58 VRLQLWDTAGQERFRSLIPS------YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      +.+.|+||+|........-.      -.-+.|=++||+|+.-++....+.+.+..-...      .-||++|.|
T Consensus       183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~i------tGvIlTKlD  250 (451)
T COG0541         183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGI------TGVILTKLD  250 (451)
T ss_pred             CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCC------ceEEEEccc
Confidence            57999999996544332211      134789999999998766555544433332211      245566666

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.03  E-value=0.0026  Score=46.67  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~   33 (207)
                      |+|+|++||||||+++.+++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.03  E-value=0.00064  Score=46.07  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD   35 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~   35 (207)
                      -.++++|++|+||||++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.00057  Score=51.57  Aligned_cols=22  Identities=14%  Similarity=0.339  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++++||.|+|||||+..+++-
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLGl   53 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILGL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999983

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.98  E-value=0.0041  Score=48.13  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---h---------------
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---F---------------   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---~---------------   71 (207)
                      .+++++|+++.|||+++++|........ ...             .....|..+.+|....   +               
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~  127 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR  127 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence            5789999999999999999998664322 111             1123666667765222   1               


Q ss_pred             ------ccccccccccCCEEEEEEECCCh---HHHHHHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 028546           72 ------RSLIPSYIRDSSVAVIVYDVANR---QSFLNTSRWIEEVRTERG-GDVIIVLVGNKT  124 (207)
Q Consensus        72 ------~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~  124 (207)
                            .......++...+=++++|--+.   .+.......+..++...+ -++|++.+++.-
T Consensus       128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                  11122345677888899987531   223333344444433322 368888887643

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.97  E-value=0.00033  Score=55.57  Aligned_cols=60  Identities=27%  Similarity=0.289  Sum_probs=0.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   67 (207)
                      ....+.|-+.++|-|++||||+||+|...++... .|-.+.......+.+..   ++-++||||
T Consensus       302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLmk---rIfLIDcPG  361 (572)
T KOG2423|consen  302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLMK---RIFLIDCPG  361 (572)
T ss_pred             ccCccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHHh---ceeEecCCC

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.97  E-value=0.00076  Score=50.67  Aligned_cols=25  Identities=28%  Similarity=0.719  Sum_probs=22.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ..++++|+|++|||||+|+-.++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            3489999999999999999988754

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK08233 hypothetical protein; Provisional

Probab=96.97  E-value=0.00085  Score=48.23  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      +.+-|+|.|++|||||||..+|...
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhh
Confidence            3467888899999999999988753

>PRK01889 GTPase RsgA; Reviewed

Probab=96.97  E-value=0.00082  Score=53.79  Aligned_cols=25  Identities=20%  Similarity=0.539  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -.++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            3689999999999999999987544

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.96  E-value=0.00072  Score=46.51  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK14531 adenylate kinase; Provisional

Probab=96.95  E-value=0.00076  Score=48.79  Aligned_cols=22  Identities=36%  Similarity=0.623  Sum_probs=19.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.+|+++|+|||||||+...+.
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la   23 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLC   23 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999998774

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.95  E-value=0.00076  Score=44.10  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      --++++|++|+|||||+..+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457999999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.95  E-value=0.0014  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-|+|+|++|+|||||++.|...
T Consensus        14 ~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         14 LLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhc
Confidence            55677899999999999999754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.95  E-value=0.00069  Score=48.69  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++|+|++|||||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14532 adenylate kinase; Provisional

Probab=96.94  E-value=0.00073  Score=48.99  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+++|+|||||||+..++-
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la   21 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLV   21 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999998885

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.94  E-value=0.00072  Score=49.03  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++|+|++|+|||||++.+.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999999654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.94  E-value=0.00082  Score=48.29  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      -.++++|+.|+|||||++.++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            468999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.93  E-value=0.0011  Score=48.17  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .=|+|+||+|||||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            448889999999999999998653

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.93  E-value=0.0011  Score=47.51  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=23.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+.++..  .-|++.|++||||||+...+...
T Consensus         1 ~~~~~~~--~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          1 MQMKPNG--YVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCCCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence            4444433  68999999999999999887643

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.93  E-value=0.00075  Score=51.15  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =++++||.|+|||||++.+.+-
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3688999999999999998753

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.92  E-value=0.001  Score=49.85  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .++|+|+|+|||||||+...|-
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La   27 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILS   27 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999874

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.92  E-value=0.00074  Score=48.79  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      --|+++|++||||||++..+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357889999999999999886

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.91  E-value=0.00087  Score=45.29  Aligned_cols=21  Identities=19%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |++.|++|+|||+++..+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999988765

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.91  E-value=0.00082  Score=48.31  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.91  E-value=0.001  Score=49.16  Aligned_cols=26  Identities=15%  Similarity=0.231  Sum_probs=22.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+.+.|+|.|++|||||||.+.+...
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            35689999999999999999988754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.90  E-value=0.00087  Score=48.61  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -.++++|+.|||||||++.+.+..
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.88  E-value=0.0012  Score=49.49  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~   33 (207)
                      ++++|++|+|||||++.+-+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999876544

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.85  E-value=0.012  Score=49.47  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=15.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      +++.||+|+||||.+..|.
T Consensus        48 LlLtGP~G~GKtttv~~La   66 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLA   66 (519)
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3456999999999998775

>PRK02496 adk adenylate kinase; Provisional

Probab=96.84  E-value=0.0011  Score=47.96  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|+|+|||||||+...+.
T Consensus         2 ~~i~i~G~pGsGKst~a~~la   22 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLA   22 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999875

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.00087  Score=46.15  Aligned_cols=24  Identities=17%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ....+|+|.|.||+|||||..++-
T Consensus         5 r~~PNILvtGTPG~GKstl~~~la   28 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLA   28 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHH
Confidence            446899999999999999999875

>PRK13949 shikimate kinase; Provisional

Probab=96.83  E-value=0.0011  Score=47.33  Aligned_cols=20  Identities=20%  Similarity=0.428  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      +|+|+|++|||||||...+-
T Consensus         3 ~I~liG~~GsGKstl~~~La   22 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALA   22 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999998764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.82  E-value=0.0011  Score=47.43  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =.++|+|+.|+|||||+|-+-+=
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhc
Confidence            36899999999999999976543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.82  E-value=0.0053  Score=41.88  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      --|++.|+.|+|||||++.+...-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            358899999999999999988653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.81  E-value=0.02  Score=47.87  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.+++.|++|+||||+++.+...
T Consensus        40 ~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46888999999999999988654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.80  E-value=0.0015  Score=48.51  Aligned_cols=23  Identities=13%  Similarity=0.210  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998764

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.80  E-value=0.0014  Score=48.34  Aligned_cols=23  Identities=13%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.80  E-value=0.0022  Score=47.49  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCC
Q 028546           13 VFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        13 ~v~G~~~sGKStli~~l~~~~   33 (207)
                      +++||.|||||||.+++.+..
T Consensus        34 aiMGPNGsGKSTLa~~i~G~p   54 (251)
T COG0396          34 AIMGPNGSGKSTLAYTIMGHP   54 (251)
T ss_pred             EEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999875

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.80  E-value=0.0015  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+..
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999888764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.79  E-value=0.0016  Score=47.90  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.79  E-value=0.0015  Score=49.17  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.78  E-value=0.0059  Score=48.39  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=22.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      ..+|+|.|+.|||||||+++++..-.
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999986543

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.78  E-value=0.0011  Score=48.22  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      +|+|+|+|||||||+...|..
T Consensus         1 ~I~i~G~pGsGKst~a~~La~   21 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAK   21 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-85
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-84
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-83
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-80
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-80
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		1e-76
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-75
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		6e-65
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-40
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-39
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-39
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-39
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		5e-39
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-39
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-39
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		5e-39
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-39
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		9e-39
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-38
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		8e-38
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-37
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-37
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-37
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		6e-37
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-37
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-37
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-36
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-36
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-34
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-34
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		5e-34
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-34
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		1e-33
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-33
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-33
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-33
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-33
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-33
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-33
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-33
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		6e-33
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-33
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		9e-33
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-32
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-32
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-32
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-32
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-32
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-32
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-32
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-32
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-32
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-32
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		2e-32
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-32
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-32
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-32
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		9e-32
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-31
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-31
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-31
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-31
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-31
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-31
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-31
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-31
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-31
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		7e-31
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-30
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-30
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-30
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		6e-30
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-29
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-29
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-29
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		9e-29
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-28
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		2e-28
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-28
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-28
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		5e-28
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-27
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-27
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-27
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-27
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-26
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-26
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-26
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-26
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-26
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-26
1vg1_A	185	Gdp-bound Rab7 Length = 185		8e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-25
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-25
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-25
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-25
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-25
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-25
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-24
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		9e-24
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-23
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-23
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-23
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		7e-23
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-22
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-22
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		5e-22
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		9e-21
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-19
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-19
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-19
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-19
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		8e-19
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		9e-19
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-18
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-18
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-18
1byu_A	216	Canine Gdp-Ran Length = 216		2e-18
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		4e-18
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		4e-18
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-18
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-18
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-18
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-18
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		7e-18
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-18
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		8e-18
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		9e-18
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-17
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-17
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-17
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-17
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-17
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-17
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-17
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		9e-17
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-16
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-16
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-16
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-16
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-16
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		8e-16
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		8e-16
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-15
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-15
1mh1_A	186	Small G-Protein Length = 186		2e-15
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		2e-15
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-15
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-15
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		8e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		8e-15
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		8e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		8e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		8e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		8e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		9e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-14
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-14
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-14
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-14
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-14
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-14
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-14
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-14
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-14
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-14
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-14
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-14
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-14
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		3e-14
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-14
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-14
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-14
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		5e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		5e-14
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		5e-14
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		6e-14
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		6e-14
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		6e-14
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-14
4q21_A	189	Molecular Switch For Signal Transduction: Structura		7e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		7e-14
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		7e-14
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		8e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		8e-14
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		9e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-13
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-13
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-13
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-13
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-13
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-13
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-13
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-13
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-13
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-13
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-13
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-13
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-13
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-13
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-13
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-13
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-13
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-13
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-13
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-13
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-13
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-13
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-13
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-13
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-13
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-13
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-13
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-13
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		4e-13
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		4e-13
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-13
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		5e-13
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		5e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		5e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-13
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-13
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		6e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-13
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		6e-13
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		7e-13
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-13
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		8e-13
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-13
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-12
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-12
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-12
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-12
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-12
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-12
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-12
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-12
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-12
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-12
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		5e-12
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		7e-12
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-11
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-11
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-11
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-11
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		3e-11
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-11
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		3e-11
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-11
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		3e-11
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		3e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-11
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		3e-11
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		4e-11
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-11
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		4e-11
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		4e-11
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-11
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		5e-11
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		5e-11
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		6e-11
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		6e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-10
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		1e-10
2kb0_A	178	Cdc42(T35a) Length = 178		1e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-10
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-10
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		3e-08
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		3e-08
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-08
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		3e-08
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-08
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		4e-08
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-07
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		2e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-06
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		1e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-05
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		5e-05
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		8e-05
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		8e-05
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		1e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-04
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		3e-04
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		4e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		4e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		6e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		6e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		7e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		8e-04
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		9e-04

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  309 bits (792), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 171/203 (84%), Gaps = 3/203 (1%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+ AV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+       +E   GGC+C
Sbjct: 189 IDIKLEKPQEQPVSE---GGCSC 208

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  305 bits (782), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 147/201 (73%), Positives = 170/201 (84%), Gaps = 3/201 (1%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191
Query: 185 VDVNLKPTVNSSQTEQQGGGC 205
           +D+ L+       +E   GGC
Sbjct: 192 IDIKLEKPQEQPVSE---GGC 209

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  305 bits (781), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 165/186 (88%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 181
Query: 185 VDVNLK 190
           +D+ L+
Sbjct: 182 IDIKLE 187

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  293 bits (751), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 155/170 (91%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKT
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           DL DKRQVS EEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGM+
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  293 bits (749), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 154/169 (91%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SPL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM 173
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGM
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 170

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 133/162 (82%), Positives = 149/162 (91%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKTDL D
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           KRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAAL
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  277 bits (709), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 129/163 (79%), Positives = 148/163 (90%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1   GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           QERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKTDL 
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           DKRQ++IEEG+ +AKE  VMFIETSAK G+N+K LFR++A+AL
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  243 bits (620), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 115/162 (70%), Positives = 136/162 (83%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KYKLVFLG+Q+VGKTSIITRF YD FD  YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFRSLIPSYIRDS+ A++VYD+ NRQSF NT++WI+++  ERG DVII LVGNKTDL D
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            R+V+ EEG  KA+E+   F ETSAKAG NIK LF+K A+ L
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 112/172 (65%)
Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
           S S + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++++ L+D TV+ ++
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGN 122
           WDTAGQER+ SL P Y R +  A++VYD+ N+++F     W++E++ +    ++I L GN
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           K DL +KR V  EE    A +  ++F+ETSAK   N+  LF  IA  LP  E
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 173

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 111/161 (68%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           + SL P Y R ++ A+IV+DV N+ SF    +W++E++ +   ++++ L GNK+DL+D R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           +V+ E+    A+E G+ F+ETSAK   N+K +F +IA  LP
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 110/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 63  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 169

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 110/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 108/165 (65%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 3   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 63  TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F ETSAK   N+  +F  IA  LP
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLP 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  156 bits (394), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 109/167 (65%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 1   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 61  TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 167

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 106/165 (64%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           G ER+ SL P Y R +  A++VYD+ N  +F     W++E++ +   +++I L GNK DL
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
             KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 106/164 (64%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ N  +F     W++E++ +   +++I L GNK DL
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
             KR V  +E    A +  ++F+ETSAK   N+  +F  IA  L
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 108/162 (66%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   +IVYDV +R SF N  +WI+E+      +V  +LVGNK DLV K
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           R V+ +EG   A   G+ FIETSAK  +N++  F  +A  + 
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIK 171

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 3/164 (1%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD-- 128
           F SL P Y R++  A++VYDV   QSF+    W++E+  +   D+II LVGNK D +   
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            +R+V+ EEG+  A+E G++F ETSAK G N+  +F  I   +P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  150 bits (378), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 107/158 (67%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ N +SF N   WI  +      DV  +++GNK D+ DK
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           RQVS E G+  A ++G+ F+ETSAKA  N++  F  +A
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  149 bits (377), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 107/158 (67%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ N +SF N   WI  +      DV  +++GNK D+ DK
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           RQVS E G+  A ++G+ F+ETSAKA  N++  F  +A
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 105/164 (64%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TI   FL++T+ L+D TV+ ++WDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A++VYD+ N  +F     W++E++ +   +++I L GNK DL
Sbjct: 63  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
             KR V  +E    A +  ++F+ETSAK   N+  +F  IA  L
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++ YD+  R SFL+   WIE+VR   G +++ +L+GNK+DL + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGDGKAKEFGVMF-IETSAKAGFNIKPLFRKIAAAL 170
           R+VS+ E    A+ + ++  IETSAK   N++  F ++A  L
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  147 bits (370), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 105/170 (61%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+   +   +  +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERF SL P Y R S+ AVIVYD+  + SF    +W++E++     ++++ + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           DL D R+V +++    A+  G + +ETSAK   NI+ LF+ I+  +P ++
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 1/162 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV N+ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           +R V  E+G+  AKE+G+ F+ETSAK G N+   F  IA  L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 97/165 (58%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDTA
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           GQERFR+L P Y R S+ A+IVYD+   ++F     W+ E+R      +++ + GNK DL
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            D R+V   +    A     +F+ETSAK   NI  LF +I+  +P
Sbjct: 123 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 121/207 (58%), Gaps = 18/207 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D +   Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV +++SF     W++E+       V+ +LVGNK DL DK
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGDGKAKEFG----VMFIETSAKAGFNIKPLFRKIAAALP---GMETLSST--K 180
           R V  +     AKEF     + F+ETSA    N++  F  +A  +      + L+ T  K
Sbjct: 129 RVVEYD----VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCAC 207
           +ED  +VNLK      Q+    GGC C
Sbjct: 185 KEDKGNVNLK-----GQSLTNTGGCCC 206

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  140 bits (352), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 110/169 (65%), Gaps = 8/169 (4%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+E+ R     +++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNI--------KPLFRKIAAAL 170
           R V  EEG+  A+E G++F+ETSAK   N+        K ++RKI   L
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 190

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 102/157 (64%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+AN++SF     W  +++T    +  ++LVGNK DL D+
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  E+G   A + G  F E SAK   N+K +F ++
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 105/154 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R +F + + W+E+ R     +++I+L+GNK+DL  +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           R+V  EEG+  A+E G++F+ETSAK   N++  F
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 2/172 (1%)
Query: 1   MASVSPLAKY--KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTV 58
           M+S++P   Y  KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T+
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV 118
           +LQ+WDTAGQERFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125
Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           LVGNK DL  K+ V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/167 (39%), Positives = 97/167 (58%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A+IVYD+   ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL D R+V   +    A     +F+ETSAK   NI  LF +I+  +P
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 1   MASVSPLAKY--KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTV 58
           M+S++P   Y  KL+ +GD  VGK  ++ RF  D +  +Y +TIG+DF  +T+ L+ +T+
Sbjct: 6   MSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 65
Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV 118
           +LQ+WDTAGQERFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +
Sbjct: 66  KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 125
Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           LVGNK DL  K+ V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 126 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/154 (41%), Positives = 97/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF+  +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+ +  SF     W++E+R   G ++ + +VGNK DL  +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           R VSI+E +  A+  G     TSAK    I+ LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 119/206 (57%), Gaps = 17/206 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D +   Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV +++SF     W++E+       V+ +LVGNK DL DK
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGDGKAKEFG----VMFIETSAKAGFNIKPLFRKIAAALP---GMETLSST--K 180
           R V  +     AKEF     + F+ETSA    N++  F  +A  +      + L+ T  K
Sbjct: 129 RVVEYD----VAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 181 QEDMVDVNLKPTVNSSQTEQQGGGCA 206
           +ED  +VNLK           GGGC 
Sbjct: 185 KEDKGNVNLK----GQSLTNTGGGCC 206

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYDV + ++F N  +W + V      +  ++LVGNK+D+ + R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++S+ N  +W++E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP---GMETL 176
           + V        A   G+ F+ETSAK   N++  F  +AA +    G+E L
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYDV + ++F N  +W + V      +  ++LVGNK+D+ + R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 164

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  136 bits (342), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 104/163 (63%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAG
Sbjct: 5   ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           QERFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL 
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            K+ V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  +E    A++ G+ FIETSA    N++  F+ I
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 109/157 (69%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  +E    A++ G+ FIETSA    N++  F+ I
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYDV + ++F N  +W + V      +  ++LVGNK+D  + R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 103/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 104/161 (64%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++S+ N  +W++E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 123/197 (62%), Gaps = 15/197 (7%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R +  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQ-------- 181
           R V  +E    A++  + FIETSA    N++  F+ I   L  +  + S KQ        
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI---LTEIYRIVSQKQIADRAAHD 182
Query: 182 ----EDMVDVNLKPTVN 194
                ++VD+++ PT +
Sbjct: 183 ESPGNNVVDISVPPTTD 199

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF+  +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+ +  SF     W++E+R   G ++ + +VGNK DL  +
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           R VSI+E +  A+  G     TSAK    I+ LF
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYD+ + ++F N  +W + V      +  ++LVGNK+D+ + R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/154 (40%), Positives = 96/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF+  +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+ +  SF     W++E+R   G ++ + +VGNK DL  +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           R VSI+E +  A+  G     TSAK    I+ LF
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            V        A   G+ F+ETSAK   N++  F  +AA + 
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 161

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F   AA +
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           FR++  +Y R +   ++VYD+ + ++F N  +W + V      +  ++LVGNK+D  + R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  133 bits (335), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 103/157 (65%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A+IVYD++   S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  EE    A+E  ++F ETSA    N+   F ++
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 108/157 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  +E    A++ G+ FIETSA    N++  F+ I
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 108/157 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  +E    A++ G+ FIETSA    N++  F+ I
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 106/164 (64%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A+IVYD++   S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM 173
           R V  +E    A E  ++F ETSA    N+   FR++  A+  M
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQM 174

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 5/177 (2%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF     W+ E+       VI VLVGNK DL ++
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVD 186
           R+VS +  +  ++   + ++ETSAK   N++ LF  +A  L     +S  +Q  +V+
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL-----ISEARQNTLVN 198

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYDV + +SF+N  RW+ E+  +   DV  +LVGNK D  ++
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           + V  E+    A + G+   ETSAK   N++ +F  I
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 107/157 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I LVGNK+DL   
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  +E    A++ G+ FIETSA    N++  F+ I
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 98/157 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ N +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R VS E G   A   G  F E SAK   N+K  F ++
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 107/157 (68%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I LVGNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R V  +E    A++ G+ FIETSA    N++  F+ I
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVG K DL  K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 102/161 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ N +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  E+G   A++ G  F E SAK   +++  F ++  A+
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ER+R++  +Y R +  A++VYD+  + SF N  +W++E+R     +++I+LVGNK+DL  
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
            R ++  +    AK+  + FIETSA    N++  F ++
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQL 165

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 104/158 (65%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G N++  F K A
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 95/157 (60%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   ++ YD+ N +SF     W  +++T    +  ++LVGNK D  D+
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R VS E G   A   G  F E SAK   N+K  F ++
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 101/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R V+ EE    A+E G++F+E SAK G N++  F + A
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/162 (42%), Positives = 101/162 (62%), Gaps = 8/162 (4%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D +   Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV +++SF     W++E+       V+ +LVGNK DL DK
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGDGKAKEFG----VMFIETSAKAGFNIKPLFRKIA 167
           R V  +     AKEF     + F+ETSA    N++  F  +A
Sbjct: 142 RVVEYD----VAKEFADANKMPFLETSALDSTNVEDAFLTMA 179

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 100/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R V+ EE    A+E G++F+E SAK G N++  F + A
Sbjct: 151 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 188

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 94/163 (57%), Gaps = 6/163 (3%)
Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
           S S    YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQL
Sbjct: 22  SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQL 81
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGN 122
           WDTAGQERFRS+  SY R +   +++YDV   +SFLN   W++ +       V I+LVGN
Sbjct: 82  WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
Query: 123 KTDLVD------KRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159
           K D+ D      ++ V    G+  A  +G +F ETSAK G NI
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTD 125
           GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T     D++  LVGNK D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL---PGM 173
             + R+V   EG   A++   +FIE SAK    ++  F ++   +   PG+
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 100/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF      TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G N++  F + A
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQ
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERF S+  +Y R +   ++VYD+  +++F +  +W++ +      D  ++LVGNK D   
Sbjct: 86  ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 129 KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKI 166
            R+++ ++G+  A++  G+ F E SAK  FN+  +F K+
Sbjct: 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           F ++  +Y R +   V+V+   +R+SF   S W E+V  E  GD+   LV NK DL+D  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            +  EE +G AK   + F  TS K   N+  +F+ +A
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 100/157 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F    + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++V+D+   Q++    RW++E+       ++++LVGNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R+V  EE    A+  G++F+ETSA    N++  F  +
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 167

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 100/157 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F    + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++V+D+   Q++    RW++E+       ++++LVGNK+DL   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           R+V  EE    A+  G++F+ETSA    N++  F  +
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 100/158 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF      TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G +++  F + A
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 169

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 98/161 (60%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ ++QSFLN   W+ +++      +  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A ++G+ + ETSA  G N++
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 187

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 11/160 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------DRTVRL 60
           K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++++D+ N QSFLN   WI +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI 159
            GNK+DL D+R V  EE    A+++G+ + ETSA  G NI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNI 172

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 99/158 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF      TIG++F SK + +  + V+LQ+WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           R+V+  E    A+E  +MF+ETSA  G +++  F + A
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCA 166

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 99/161 (61%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++++D+ ++QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A+++G+ + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           + S    + +K++ LGD  VGK+S++ R++ +KFD+    TIG++FL+K + ++   V +
Sbjct: 3   LGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTM 62
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V + QSF N S W +E       +      
Sbjct: 63  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 122
Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK 165
            V++GNKTD + +RQVS EE     K+ G   + ETSAK   N+   F +
Sbjct: 123 FVILGNKTD-IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEE 171

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 99/161 (61%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++++D+ ++QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A+++G+ + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S L  +K++ LGD  VGK+S++ R++ +KFDT    TIG++FL+K + ++   V +
Sbjct: 3   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V + QSF N S W +E       +      
Sbjct: 61  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK 165
            V++GNK D + +RQVS EE     ++ G   + ETSAK   N+   F +
Sbjct: 121 FVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 169

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++ +D+ ++QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A+++G+ + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVL 119
           QLWDTAG ERFRSL  ++ RD+   ++ +D+ ++QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK 160
           +GNK DL D+R+V+  +    A+++G+ + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 8/170 (4%)
Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S L  +K++ LGD  VGK+S++ R++ +KFDT    TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V + QSF N S W +E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK 165
            V++GNK D + +RQVS EE     ++ G   + ETSAK   N+   F +
Sbjct: 119 FVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 167

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV    +F     W +E   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGDGKA-KEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
            + RQV+ +        +  + + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  113 bits (282), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV    +F     W +E   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGDGKA-KEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
            + RQV+ +        +  + + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV    +F     W +E   +       +   V++GNK D 
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VDKRQVSIEEGDGKA-KEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
            + RQV+ +        +  + + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70  RFR-SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD  N  SF +   WIEE +      D+  +LVGNK DL 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAK 154
              QV  +     A        ETSAK
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70  RFR-SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ N  SF +   WIEE +      D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAK 154
              QV  +     A    +   ETSAK
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 7/164 (4%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
           K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD----VIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV N  SF N   W +E       +       V++GNK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVD-KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIA 167
             + K+ VS +     AK  G +    TSAK   N+   F +IA
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIA 173

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG----DVIIVLVGNKTDL 126
           F+SL  ++ R +   V+V+DV    +F     W +E   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VDKRQVSIEEGDGKA-KEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
            + RQV+ +        +  + + ETSAK   N++  F+ IA      ET
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET 178

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 80/115 (69%)
Query: 12  LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           L+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72  RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           R++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  107 bits (266), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 97/169 (57%), Gaps = 6/169 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD+    TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVIIVLVGNKTDL 126
           F+SL   + R +   ++ + V +RQSF N   W +E       +       V++GNK D 
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDK 128
Query: 127 VDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAALPGME 174
            D RQV+ EE      E G   ++ETSAK   N+   F +    +  +E
Sbjct: 129 ED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/189 (33%), Positives = 108/189 (57%), Gaps = 13/189 (6%)
Query: 1   MASVSP-----LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED 55
           MA+  P     LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+ 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDG 59
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGD 114
             V++ + DTAGQE + ++  +Y R     + V+ +   +SF  T+ + E++ R +   +
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119
Query: 115 VIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           V  +LVGNK+DL DKRQVS+EE   +A+++ V ++ETSAK   N+  +F  +      M 
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL------MR 173
Query: 175 TLSSTKQED 183
            + + K ED
Sbjct: 174 EIRARKMED 182

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNK 123
           TAGQE + ++  +Y R     + V+ +   +SF  T+ + E++ R +   +V  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           +DL DKRQVS+EE   +A+++ V ++ETSAK   N+  +F
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 98/160 (61%), Gaps = 2/160 (1%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNK 123
           TAGQE + ++  +Y R     + V+ +   +SF  T+ + E++ R +   +V  +LVGNK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           +DL DKRQVS+EE   +A+++ V ++ETSAK   N+  +F
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 60
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++  +Y R     + V+ +   +SF  T+ + E++ R +   +V  +LVGNK+D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L DKRQVS+EE   +A ++ V ++ETSAK   N+  +F
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 40/197 (20%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------- 56
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D            
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57  --------------------------TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD 90
                                      ++  +WDTAGQER+ S++P Y R ++ A++V+D
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91  VANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIE 150
           ++N  +      W+ +++     + II+LV NK D  +K QV I E    A++  ++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIKPLFRKIA 167
           TSAK G NIK +F  +A
Sbjct: 183 TSAKTGTNIKNIFYMLA 199

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 104/180 (57%), Gaps = 8/180 (4%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNK 123
           TAG E + ++  +Y R     + V+ +   +SF  T+ + E++ R +   +V  +LVGNK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQED 183
           +DL DKRQVS+EE   +A+++ V ++ETSAK   N+  +F  +      M  + + K ED
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL------MREIRARKMED 174

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 99/161 (61%), Gaps = 3/161 (1%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 3   SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVI-IVLVGN 122
           TAG E + ++  +Y R     ++V+ +   +SF  T+ + E++ R +   D I +++VGN
Sbjct: 62  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           K+DL ++RQV +EE   KA+E+GV ++ETSAK   N+  +F
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 1   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVI-IVLVGNKT 124
           G E + ++  +Y R     ++V+ +   +SF  T+ + E++ R +   D I +++VGNK+
Sbjct: 60  GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           DL ++RQV +EE   KA+E+GV ++ETSAK   N+  +F
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVF 158

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
           S + + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVIIVLV 120
           D  GQ     ++  YI  +   ++VYD+ N QSF N   W   +++V  E     ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           GNK DL   R +  E+     +E G      SAK G ++   F+K+AA + G++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 16/189 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G        +L+D+   ++  +WDTAG
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           QE+   L   Y   +S A++ +DV +R +  N +RW++E +   G +  IV+  NK D+ 
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 DKRQVS----IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQED 183
           +++++S    +E   GK  E    + E SAK   N    F  +A    G   L       
Sbjct: 131 NRQKISKKLVMEVLKGKNYE----YFEISAKTAHNFGLPFLHLARIFTGRPDLIFVS--- 183
Query: 184 MVDVNLKPT 192
             +VNL+PT
Sbjct: 184 --NVNLEPT 190

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 3/175 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 1   MASVS---PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT 57
           MAS +   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63
Query: 58  VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII 117
           ++  +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ I
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPI 122
Query: 118 VLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           VL GNK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 123 VLCGNKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I +DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE++  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD 121
Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
            R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 -RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +F  L   Y  ++  A+I++DV +R ++ N   W  ++      ++ IVL GNK D V +
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 130
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 131 RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 5   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 64
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE-VRTERGGDVIIVLV 120
           +WDTAG E+F  L   Y   +  A+I++DV +R ++ N   W  + VR     ++ IVL 
Sbjct: 65  VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIVLC 122
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           GNK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 123 GNKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 176

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +F  L   Y  ++  A+I++DV +R ++ N   W  ++      ++ IVL GNK D V +
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 123
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 124 RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +F  L   Y  ++  A+I++DV +R ++ N   W  ++      ++ IVL GNK D V +
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVD-VKE 122
Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 123 RKVKAKTITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 3/171 (1%)
Query: 6   PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDT
Sbjct: 3   PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDT 62
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125
           AG E+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL GNK D
Sbjct: 63  AGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVD 121
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           + D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 IKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Query: 1   MASVS---PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT 57
           MAS +   P  ++KLV +GD   GKT+ + R +  + +  Y AT+G++      +     
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGP 63
Query: 58  VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII 117
           ++  +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ I
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPI 122
Query: 118 VLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           VL GNK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 123 VLCGNKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 90/176 (51%), Gaps = 3/176 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  
Sbjct: 3   AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFN 62
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAG E+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL G
Sbjct: 63  VWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCG 121
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177
           NK D+ D R+V  +      K+  + + + SAK+ +N +  F  +A  L G   L 
Sbjct: 122 NKVDIKD-RKVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 19/177 (10%)
Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRF--MYDKFDT--------TYQATIGIDFLSKT 50
           ++S S    Y++V +G+Q VGK+++   F  ++D  D+        TY+ T+ +D  S T
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88
Query: 51  MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRT 109
           + L      L +W+  G+  +  L    ++     +IVY + +R SF   S   I+  R 
Sbjct: 89  IIL------LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA 140
Query: 110 ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
            +  D+ I+LVGNK+DLV  R+VS+ EG   A  F   FIETSA    N+K LF  I
Sbjct: 141 RQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F T Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + ++ S+ N + +WI E+R    G V I+LVG K DL D 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +Q          ++  +G+   K  G  ++IE S+K   N+K +F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 84/160 (52%), Gaps = 4/160 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +A Y++V LGD  VGKTS+ + F   K +      +G D   +T+ ++     L + DT 
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 67  GQERFRSLIP--SYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIVLVGNK 123
             E+        S ++  S  VIVY +A+R SF + S   I+  RT +   V I+LVGNK
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
            DL   R+VS+EEG   A  F   FIETSA    N+  LF
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 19/168 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFDT--------TYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D+        TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIV 118
           L +W+  G+  +  L    ++     +IVY + +R SF   S   I+  R  +  D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           LVGNK+DLV  R+VS+ EG   A  F   FIETSA    N+K LF  I
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGI 166

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 19/168 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFDT--------TYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D+        TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIV 118
           L +W+  G+  +  L    ++     +IVY + +R SF   S   I+  R  +  D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           LVGNK+DLV  R+VS+ EG   A  F   FIETSA    N+K LF  I
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 166

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F T Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + ++ S+ N S +WI E++    G V IVLVG K DL D 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG-VPIVLVGTKLDLRDD 127
Query: 130 RQVSIE----------EGDGKAKEFGV-MFIETSAKAGFNIKPLF 163
           +Q  I+          +G+   K  G   +IE S+K+  N+K +F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KY+LV +G   VGK+++  +F+   F T Y  TI  D  +K   ++DR  RL + DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ V +R SF    ++  ++ R +   +  ++L+GNK DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            +RQV+ EEG   A++  V ++E SAK   N+   F ++   +
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 19/168 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFDT--------TYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D+        TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIV 118
           L +W+  G+  +  L    ++     +IVY + +R SF   S   I+  R  +  D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           LVGNK+DLV  R+VS+ EG   A  F   FIETSA    N+K LF  I
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGI 166

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 2   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +   + E++ R +   DV +VLVGNK+D
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK 154
           L   R V  ++    A+ +G+ FIETSAK
Sbjct: 121 L-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G + VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS++  +  + + T Y  T   D  S  + ++ R VRLQL DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           F  L P    ++ + ++ + V +  SF N S +W+ E+R        I+LVG ++DL + 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGDGKAKEF-------------GVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
            +V IE    K K                  +IE SA    N+K +F   AA + G++  
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD--AAIVAGIQ-Y 196
Query: 177 SSTKQ 181
           S T+Q
Sbjct: 197 SDTQQ 201

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 82/147 (55%), Gaps = 3/147 (2%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + N +SF +   + E++ R +   DV +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAK 154
             R V  ++    A+ +G+ FIETSAK
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY +  + +F +     E++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           L D+R V  E+G   A+++    F+E+SAK+  N+  +F
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY +  + +F +     E++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           L D+R V  E+G   A+++    F+E+SAK+  N+  +F
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 3   MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 61
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY +  + +F +     E++ R +   DV ++LVGNK D
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 126 LVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           L D+R V  E+G   A+++    F+E+SAK+  N+  +F
Sbjct: 122 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 3/172 (1%)
Query: 6   PLAKY-KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           PL +Y K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNK 123
           TAGQ+ +  L  S+I      V+VY V +  SF       +++    G   V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
            DL  +R+V   EG   A+ +G  F+E+SA+     + +F K+   +  +E 
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E+F ++   Y+++     +VY +  + +F +     E++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           L D+R V  E+G   A+++    F+E+SAK+  N+  +F
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF T Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P   R + + V+ + + ++ S+ N   +W+ E+R     +V IVLVG K DL D 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +         ++  +G+   K+ G   +IE S+K   N+K +F
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F T Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P   R + V ++ + + ++ S+ N   +W+ E++    G + IVLVG K DL D 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPG-IPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +Q          ++  +G+   K  G V ++E S+K   N+K +F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
           S++  A+ KL   G   VGK++++ RF+  +F   Y  T+   +  +   ++D  V +++
Sbjct: 22  SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEI 80
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSF---LNTSRWIEEVRTERGGDVIIVL 119
            DTAGQE        ++R     V+VYD+ +R SF   L     ++E++  +  +V ++L
Sbjct: 81  LDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLIL 137
Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG-FNIKPLFRKIA 167
           VGNK DL   RQVS EEG+  A E    F E SA  G  NI  +F ++ 
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   ++   + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD---- 125
           +  L P +  D+SV ++ +DV +  SF N  +RW  EV       V I++VG KTD    
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 126 --LVDK------RQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIA 167
             LV+K        V+   G   A+  G V ++E SA+   N+  +F++ A
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +  T Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P    DS V ++ + V NR SF N S +W  E++         VLVG K DL   
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK 165
               V+ +EGD   ++ G V +IE S+ A   +  +F K
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +  T Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P    DS V ++ + V NR SF N S +W  E++         VLVG K DL   
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK 165
               V+ +EGD   ++ G V +IE S+ A   +  +F K
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+  D   + +  +     LQ+ DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDV---IIVLVGNKTDL 126
           +F ++    I      ++VY + +RQS L   + I E   E  GDV    I+LVGNK D 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQS-LEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
              R+V   E +  A+ +   F+ETSAK   N+K LF+++
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V++I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 9   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 67
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 68  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 126
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 127 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 7   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 65
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 124
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 6   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 64
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 123
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 7   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 65
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 124
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 6   RKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQ 64
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 65  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 123
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 124 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 5   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 7   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 65
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 66  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 124
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 125 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 8   RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 66
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 67  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 125
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 126 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++      +F   Y  T+  ++++  + ++ R V L LWDTAGQ
Sbjct: 10  RRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQ 68
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLV 127
           E +  L P    DS+V +I + +    S  N   +WI EV     G V I+LVG K DL 
Sbjct: 69  EDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQG-VPIILVGCKVDLR 127
Query: 128 DKRQ------------VSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIAAA 169
           +  Q            V+ +EG   A + G   + E SAK G+ ++ +F     A
Sbjct: 128 NDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRA 182

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F  +Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--------DVIIVLVGN 122
           +     +Y  D +  ++VY V + +SF       E ++   G          + I+LVGN
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           K DL  +R +S EEG   A+ +   F+E+SAK       +FR+I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 2/165 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + N+QSF +     +++ R +R   V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           L  +R+VS  EG   A+E+G  F+ETSAK+   +  LF +I   +
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F  +Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--------DVIIVLVGN 122
           +     +Y  D +  ++VY V + +SF       E ++   G          + I+LVGN
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           K DL  +R +S EEG   A+ +   F+E+SAK       +FR+I
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 2/166 (1%)
Query: 6   PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           P   +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DT
Sbjct: 6   PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDT 64
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKT 124
           AGQE F ++   Y+R     ++V+ + +RQSF    +   ++ R +   D  +VLVGNK 
Sbjct: 65  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 124
Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           DL  +RQV   E         V + E SAK   N+   F ++  A+
Sbjct: 125 DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F  +Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--------DVIIVLVGN 122
           +     +Y  D +  ++VY V + +SF       E ++   G          + I+LVGN
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 114
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           K DL  +R +S EEG   A+ +   F+E+SAK       +FR+I
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGK  ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 70
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 129
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 130 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR        I+LVG K DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAALPG 172
           +             ++  +G   A+E G V ++E SA     +K +F +   A+ G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 16/176 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR        I+LVG K DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAALPG 172
           +             ++  +G   A+E G V ++E SA     +K +F +   A+ G
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V +I + V N  SF N    W+ E++ E   +V  +L+G + DL D 
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 129 -----------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAAL 170
                      ++ + +E+G   AKE G   ++E SA     +K +F +   A+
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +     Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQ 83
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 142
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A       ++E SAK    ++ +F
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR        I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   A+E G V ++E SA     +K +F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQ 83
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKKDLR 142
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A       ++E SAK    ++ +F
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 77
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF + + + E++ R +   DV +VLVGNK D
Sbjct: 78  GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V  ++    AK +G+ FIETSAK    ++  F
Sbjct: 138 L-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 87/171 (50%), Gaps = 16/171 (9%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTA
Sbjct: 23  MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTA 81
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK-- 123
           GQE +  L P    D+ V ++ + V +  S  N   +W+ EV+     +V I+LV NK  
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKD 140
Query: 124 --------TDLVDKRQVSIEEGDGKAKEFGVM---FIETSAKAGFNIKPLF 163
                   T+L   +Q  +   DG+A    +    ++E SAK    ++ +F
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 130 R------------QVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 5   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 5   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 5   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 123 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 3   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 2   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +   + E++ R +   DV +VLVGNK+D
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK 154
           L   R V  ++    A+ +G+ FIETSAK
Sbjct: 121 LP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 2   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 60
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +   + E++ R +   DV +VLVGNK+D
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK 154
           L   R V  ++    A+ +G+ FIETSAK
Sbjct: 121 LP-SRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 5   RKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           E +    P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 64  EDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
Query: 128 DKRQVSIE------------EGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
           +    + E            EG   A   G   ++E SAK    ++ +F
Sbjct: 123 NDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 3   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQ 61
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 62  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 120
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 121 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
           S+S  + YK++ LG   VGK+++    ++   +   +A        +++ ++     L +
Sbjct: 1   SMSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMV 58
Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVG 121
           +D   Q+  R L    +      VIVY V ++ SF   S    ++R  R   DV I+LVG
Sbjct: 59  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 118
Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           NK+DLV  R+VS++EG   A  F   FIETSA    N++ LF  +
Sbjct: 119 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  S+ N  ++W  EVR        I+LVG K DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRDD 122
Query: 130 R------------QVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE   V ++E SA     +K +F
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  S+ N  ++W  EVR        I+LVG K DL D 
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRDD 128
Query: 130 R------------QVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE   V ++E SA     +K +F
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
            S   + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L 
Sbjct: 3   GSGGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 61
Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLV 120
           + DTAGQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLV
Sbjct: 62  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 121
Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           GNK DL   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 122 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 163

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)
Query: 4   VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           VS  + YK++ LG   VGK+++    ++   +   +A        +++ ++     L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGN 122
           D   Q+  R L    +      VIVY V ++ SF   S    ++R  R   DV I+LVGN
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           K+DLV  R+VS++EG   A  F   FIETSA    N++ LF  +
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 163

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 6   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 64
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 65  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 125 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 6   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 64
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 65  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 125 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + +YKLV +G   VGK+++  + + + F   Y  +I  D   K + ++  T  L + D
Sbjct: 5   SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNK 123
           TAGQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK
Sbjct: 64  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
            DL   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 162

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 17/173 (9%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SP+ K KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWD
Sbjct: 5   SPIRK-KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWD 62
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK 123
           TAG E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK
Sbjct: 63  TAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 121
Query: 124 TDL------------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
            DL            + +  V  EEG   A   G   ++E SAK    ++ +F
Sbjct: 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  S+ N  ++W  EVR        I+LVG K DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVR-HHCPSTPIILVGTKLDLRDD 129
Query: 130 R------------QVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE   V ++E SA     +K +F
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   +   +A        +++ ++     L ++D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVD 128
             R L    +      VIVY V ++ SF   S    ++R  R   DV I+LVGNK+DLV 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
            R+VS++EG   A  F   FIETSA    N++ LF  +
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK ++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L + DTA
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDVLDTA 74
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE F ++   Y+R     +IVY V ++ SF +  R+ + + R +      ++LV NK D
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK-AGFNIKPLFRKI 166
           L+  R+V+ ++G   A ++ + +IETSAK    N+   F  +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F  +   TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--------DVIIVLVGN 122
           +     +Y  D +  ++VY V + +SF       E ++   G          + I+LVGN
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSF-------EVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           K DL  +R +S EEG   A+ +   F+E+SAK       +FR+I
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 77
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +   + E++ R +   DV +VLVGNK D
Sbjct: 78  GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 137
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK 154
           L   R V  ++    A+ +G+ FIETSAK
Sbjct: 138 LP-SRTVDTKQAQDLARSYGIPFIETSAK 165

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGN+ D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 3/166 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L + DTA
Sbjct: 11  LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDVLDTA 69
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE F ++   Y+R     +IVY V ++ SF +  R+ + + R +      ++LV NK D
Sbjct: 70  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 129
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK-AGFNIKPLFRKIAAAL 170
           L+  R+V+ ++G   A ++ + +IETSAK    N+   F  +   +
Sbjct: 130 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  +I  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L + DTA
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDVLDTA 74
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE F ++   Y+R     +IVY V ++ SF +  R+ + + R +      ++LV NK D
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK-AGFNIKPLFRKI 166
           L+  R+V+ ++G   A ++ + +IETSAK    N+   F  +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF +  ++W  EVR     +  I+LVG K DL D 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 RQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQ
Sbjct: 5   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQ 63
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDL- 126
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 64  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 122
Query: 127 -----------VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLF 163
                      + +  V  EEG   A       ++E SAK    ++ +F
Sbjct: 123 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   +  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF +  ++W  EVR     +  I+LVG K DL D 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 RQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 16/167 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P     + V +I + + +  SF +  ++W  EVR     +  I+LVG K DL D 
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 130 RQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           +             ++  +G   AKE G V ++E SA     +K +F
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G+E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE   ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++     L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
            QE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
            QE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F      TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 6   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 64
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 65  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 125 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 161

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 3/166 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L  YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + DTA
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDVLDTA 74
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           GQE F ++   Y+R     +IVY V ++ SF +  R+ + + R +      ++LV NK D
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAK-AGFNIKPLFRKIAAAL 170
           L+  R+V+ ++G   A ++ + +IETSAK    N+   F  +   +
Sbjct: 135 LMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 35/186 (18%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIP---------SYIRD----------SSVAVIVYDVANRQSFLNT-SRWIEEVRTE 110
           +  L P         +Y +D          + V +I + + +  SF N  ++W  EVR  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFG-VMFIETSAKAGF 157
              +  I+LVG K DL D +             ++  +G   AKE G V ++E SA    
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 184
Query: 158 NIKPLF 163
            +K +F
Sbjct: 185 GLKTVF 190

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTD 125
           G E + ++   Y+R     + V+ + N +SF +  ++ E++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           L   R V   +    A+ +G+ +IETSAK    ++  F
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 4/147 (2%)
Query: 22  KTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD 81
           K+S++ RF+   F  TY  TI  D   + +  +     LQ+ DT G  +F ++    I  
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82  SSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVSIEEGDG 139
               ++V+ V ++QS        + +   +G   D+ ++LVGNK D   +R+V   E   
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET-QREVDTREAQA 138
Query: 140 KAKEFGVMFIETSAKAGFNIKPLFRKI 166
            A+E+   F+ETSAK  +N+K LF+++
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMY--DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW--DTA 66
           K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D TV ++L+  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIE---EVRTERGGDVIIVLVGNK 123
           G + ++  I  Y      A++V+DV++ +SF +   W E     R +R   +  VLV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 124 TDLVDKR-QVSIEEGDGKAKEFGVMFIETSA 153
           TDL  +R QV ++     A    + F + SA
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 17/182 (9%)
Query: 4   VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           +S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGN 122
           DTAGQE +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG 
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDLVD------------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAA 168
           + DL D            ++ ++ E  +  A++   V ++E SA     +K +F   I A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 182
Query: 169 AL 170
           AL
Sbjct: 183 AL 184

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 187

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAALPGMET 175
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL   E 
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 184
Query: 176 LSS 178
             S
Sbjct: 185 KKS 187

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAALPGMET 175
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 125
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 16/159 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD-- 125
             + ++ P    DS   +I +D++  ++  +   +W  E++ E   +  ++LVG K+D  
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 145
Query: 126 --------LVDKRQ--VSIEEGDGKAKEFG-VMFIETSA 153
                   L + RQ  VS ++G   AK+ G   +IE SA
Sbjct: 146 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAALPGMET 175
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 66
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 67  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 125
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LG+  VGK+++   F   + D  ++     D   + + ++   V L ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70  RFRSLIPSYIRDSSVA-VIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLV 127
                +  +   +  A +IV+ V +R+SF      +  +R  R   D+ ++LVGNK+DL 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
             R+VS+EEG   A       IETSA    N + LF
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAALPGMET 175
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL   E 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
Query: 176 LSS 178
             S
Sbjct: 183 KKS 185

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 16/159 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD-- 125
             + ++ P    DS   +I +D++  ++  +   +W  E++ E   +  ++LVG K+D  
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 124
Query: 126 --------LVDKRQ--VSIEEGDGKAKEFG-VMFIETSA 153
                   L + RQ  VS ++G   AK+ G   +IE SA
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 16/159 (10%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 23  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD-- 125
             + ++ P    DS   +I +D++  ++  +   +W  E++ E   +  ++LVG K+D  
Sbjct: 82  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 140
Query: 126 --------LVDKRQ--VSIEEGDGKAKEFG-VMFIETSA 153
                   L + RQ  VS ++G   AK+ G   +IE SA
Sbjct: 141 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L LWDT+
Sbjct: 9   VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTS 67
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD 125
           G   + ++ P    DS   ++ +D++  ++  +   +W  E+  +      ++L+G KTD
Sbjct: 68  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 126
Query: 126 ----------LVDKRQ--VSIEEGDGKAKEFGV-MFIETSA-KAGFNIKPLFR 164
                     L  ++Q  +S E+G   AK+ G  +++E SA  +  +I  +FR
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 179

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L LWDT+
Sbjct: 8   VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTS 66
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD 125
           G   + ++ P    DS   ++ +D++  ++  +   +W  E+  +      ++L+G KTD
Sbjct: 67  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 125
Query: 126 ----------LVDKRQ--VSIEEGDGKAKEFGV-MFIETSA-KAGFNIKPLFR 164
                     L  ++Q  +S E+G   AK+ G  +++E SA  +  +I  +FR
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 178

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L LWDT+
Sbjct: 25  VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTS 83
Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTD 125
           G   + ++ P    DS   ++ +D++  ++  +   +W  E+  +      ++L+G KTD
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLLIGCKTD 142
Query: 126 ----------LVDKRQ--VSIEEGDGKAKEFGV-MFIETSA-KAGFNIKPLFR 164
                     L  ++Q  +S E+G   AK+ G  +++E SA  +  +I  +FR
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ- 82
Query: 70  RFRSLIPSYIRDSSVA-----VIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNK 123
                   ++RD  +      +IV+ V +R+SF      +  +R  R   D+ ++LVGNK
Sbjct: 83  ---GDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139
Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
           +DL   R+VS+EEG   A       IETSA    N + LF
Sbjct: 140 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGK  ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 12  KCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 70
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 71  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 129
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 130 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 2/156 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D  ++     D   + + ++   V L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70  RFRSLIPSYIRDSSVA-VIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLV 127
                +  +   +  A +IV+ V +R+SF      +  +R  R   D+ ++LVGNK+DL 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF 163
             R+VS+EEG   A       IETSA    N + LF
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y   +  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +K  + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V ++ + V +  SF N   +W+ E+ T        +LVG + DL D 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 129 -----------KRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF-RKIAAAL 170
                      ++ ++ E  +  A++   V ++E SA     +K +F   I AAL
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  DT    T+G +   KT  LE R  +L +WD  GQ
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFNGEDIDTI-SPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDL 126
           +  RS   +Y   +   + V D A+RQ   +  R ++ +   ER     +++  NK DL
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMY-DKFDTTYQ-ATIGIDFLSKTMYLEDRTVR---LQLWDT 65
           KL  +G+   GKT+++ +     K D   Q AT+GID     + + D+  R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGNKT 124
           AG+E F S  P +    ++ + VYD++  Q+ ++  + W+  ++  R     ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVDKRQ 131
           D+ D++Q
Sbjct: 121 DVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMY-DKFDTTYQ-ATIGIDFLSKTMYLEDRTVR---LQLW 63
           + KL  +G+   GKT+++ +     K D   Q AT+GID     + + D+  R   L +W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR-WIEEVRTERGGDVIIVLVGN 122
           D AG+E F S  P +    ++ + VYD++  Q+ ++  + W+  ++  R     ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVDKRQ 131
             D+ D++Q
Sbjct: 121 HLDVSDEKQ 129

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 10/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            L  LG +  GK+++  +F+  +F + Y   +  D  S    ++ + V L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-----RTERGGDVIIVLVGNKTD 125
            R+    Y+  +   ++VY V +RQSF ++S ++E +      T+R   +  +L+GNK D
Sbjct: 82  PRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRS--IPALLLGNKLD 138
Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-NIKPLFRK 165
           +   RQV+  EG   A  FG +F E SA   F +++ +F +
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  DT    T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDL 126
           +  RS   +Y   +   + V D A+RQ   +  R ++ +   ER     +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  DT    T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDL 126
           +  RS   +Y   +   + V D A+RQ   +  R ++ +   ER     +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +L+ LG  + GKT+I+ +F  +  DT    T+G +   KT  LE R  +L +WD  G + 
Sbjct: 3   RLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNI--KT--LEHRGFKLNIWDVGGLKS 57
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDL 126
            RS   +Y   +   + V D A+RQ   +  R ++ +   ER     +++  NK DL
Sbjct: 58  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 114

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +L  +G Q  GKT+ +      +F+     T+G +    T       V ++LWD  GQ R
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 79
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDL 126
           FRS+   Y R  S  V + D A+++    +   +  +  +     I VLV GNK DL
Sbjct: 80  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 378
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
            R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL D
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 437

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 19  SVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78
           + GKT+I+ +F  +  DT    T+G +   KT  LE R  +L +WD  GQ+  RS   +Y
Sbjct: 28  NAGKTTILKKFNGEDVDTI-SPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNY 82
Query: 79  IRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDL 126
              +   + V D A+RQ   +  R ++ +   ER     +++  NK DL
Sbjct: 83  FESTDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +L  +G Q  GKT+ +      +F+     T+G +    T       V ++LWD  GQ R
Sbjct: 33  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 88
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDL 126
           FRS+   Y R  S  V + D A+++    +   +  +  +     I VLV GNK DL
Sbjct: 89  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 145

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +L  +G Q  GKT+ +      +F      T+G +    T       V +++WD  GQ R
Sbjct: 24  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQPR 79
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDL--- 126
           FRS+   Y R  +  V + D A+R+    +   +  +  +     I VLV GNK DL   
Sbjct: 80  FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 127 VDKRQV 132
           +D++Q+
Sbjct: 140 LDEKQL 145

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 14  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 68
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
            R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL D
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 15  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 69
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
            R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 128

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
            R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 2   RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
            R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 115

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +  TT   T+G +  + T     + V+  +WD  GQ++
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 56
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLVD 128
            R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPD 115

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +  TT   TIG +  +    +E + +   +WD  GQ
Sbjct: 17  QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 71
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSF------LNTSRWIEEVRTERGGDVIIVLVGN 122
           +R R L   Y +++   + V D  +R+        L     ++E+R     D +++L  N
Sbjct: 72  DRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELR-----DAVLLLFAN 126
Query: 123 KTDLVDKRQVS 133
           K DL +   +S
Sbjct: 127 KQDLPNAMAIS 137

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +P  + +++ LG  + GKT+++ +   +   +    T G +  S    ++ +  +L +WD
Sbjct: 13  APDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWD 67
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNK 123
             GQ + R    SY  ++ + + V D A+R+ F  T + + E+  E     + VL+  NK
Sbjct: 68  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 127
Query: 124 TDLVDKRQVS-IEEG 137
            DL+     S I EG
Sbjct: 128 QDLLTAAPASEIAEG 142

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +P  + +++ LG  + GKT+++ +   +   +    T G +  S    ++ +  +L +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWD 66
Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNK 123
             GQ + R    SY  ++ + + V D A+R+ F  T + + E+  E     + VL+  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126
Query: 124 TDLVDKRQVS-IEEG 137
            DL+     S I EG
Sbjct: 127 QDLLTAAPASEIAEG 141

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMY----LED----RTV 58
           L + K+  +GD   GKTS++ + + + FD     T G++ ++K       LE+    +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV 118
               WD  GQE   +    ++  SSV +++ D    ++  N   W+  +  + GG   ++
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIE-KYGGKSPVI 154
Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSS 178
           +V NK D      +  ++ + +       F   S K G  ++ + + + +A+   +++  
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIYG 214
Query: 179 T 179
           T
Sbjct: 215 T 215

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +++ LG  + GKT+++ +   +   +    T G +  S    ++ +  +L +WD  G
Sbjct: 3   SEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS----VQSQGFKLNVWDIGG 57
Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDL 126
           Q + R    SY  ++ + + V D A+R+ F  T + + E+  E     + VL+  NK DL
Sbjct: 58  QRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 117
Query: 127 VDKRQVS-IEEG 137
           +     S I EG
Sbjct: 118 LTAAPASEIAEG 129

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ R    +  TT   TIG +  + T     + ++ Q+WD  GQ  
Sbjct: 4   RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVETVTY----KNLKFQVWDLGGQTS 58
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
            R     Y  ++   + V D  +R    ++ S  +  +  E     I+V+  NK D+
Sbjct: 59  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 115

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +  TT   TIG +  +    +E + +   +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNICFTVWDVGGQ 83
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLV 127
           ++ R L   Y +++   + V D  +R+    ++  ++++  E    D ++++  NK D+ 
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143
Query: 128 DKRQVS 133
           +   VS
Sbjct: 144 NAMPVS 149

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG +  +    +E R +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVET----VEFRNISFTVWDVGGQDK 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE-VRTERGGDVIIVLVGNKTDL 126
            R L   Y  ++   + V D  +R+   +    +   +  E   D II++  NK DL
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDL 130

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++   T   TIG    S    +     R  +WD  GQ
Sbjct: 22  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 76
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQ 95
           E  RS   +Y  ++   ++V D  +R+
Sbjct: 77  ESLRSSWNTYYTNTEFVIVVVDSTDRE 103

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++   T   TIG    S    +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVINNTRFLMWDIGGQ 75
Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQ 95
           E  RS   +Y  ++   ++V D  +R+
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRE 102

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ R    +  TT + TIG +  +    L  + ++L +WD  GQ  
Sbjct: 20  RILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVET----LSYKNLKLNVWDLGGQTS 74
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIE-EVRTERGGDVIIVLVGNKTD 125
            R     Y  D++  + V D  ++      S+ +   ++ E   D  +++  NK D
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG +  +    +E + +   +WD  GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 221
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE----VRTERGGDVIIVLVGNKTDL 126
            R L   Y +++   + V D  +R+  +N +R  EE    +  +   D ++++  NK DL
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRER-VNEAR--EELMRMLAEDELRDAVLLVFANKQDL 278

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 6/124 (4%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKTSI+ +    +  TT   TIG +  +    +E + +   +WD  GQ++
Sbjct: 19  RILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDK 73
Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDK 129
            R L   Y +++   + V D  +R         + ++  E    + I+++  NK DL   
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQA 133
Query: 130 RQVS 133
             +S
Sbjct: 134 MSIS 137

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 9  KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
          ++K++ +G  + GKT+I+ +F+ ++   T   TIG    S    +  +     +WD  GQ
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIG----SNVEEIVVKNTHFLMWDIGGQ 70
Query: 69 ERFRSLIPSYIRDSSVAVIVYDVANRQ 95
          E  RS   +Y  ++   ++V D  +R+
Sbjct: 71 ESLRSSWNTYYSNTEFIILVVDSIDRE 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-108
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-104
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-95
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-90
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-90
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-87
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-84
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-78
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-78
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-77
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	8e-76
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-74
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-73
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-73
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-73
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-73
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-73
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	8e-73
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-72
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-72
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-72
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-72
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-72
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-72
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-72
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-71
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-71
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-71
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-71
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	7e-71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-70
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-70
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-70
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	9e-70
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-69
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-69
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-69
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-69
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	7e-69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-68
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	3e-68
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-67
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-67
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	7e-66
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-65
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-65
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-65
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-64
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	6e-64
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	8e-64
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-63
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-61
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-61
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-60
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-58
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-58
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	6e-58
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-57
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-56
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-51
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-48
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-43
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-42
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	9e-42
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-41
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	5e-41
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-40
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-39
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-38
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	9e-26
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	3e-25
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-15
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-14
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-12
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	7e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-12
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	2e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	5e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-11
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-07
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	2e-06
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	4e-06
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-04
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	4e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	6e-04
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	6e-04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	8e-04

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  306 bits (787), Expect = e-108
 Identities = 145/203 (71%), Positives = 168/203 (82%), Gaps = 4/203 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDM 184
           DL DKRQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGME+     +EDM
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 191

Query: 185 VDVNLKPTVNSSQTEQQGGGCAC 207
           +D+ L+      Q +    G   
Sbjct: 192 IDIKLEK----PQEQPVSEGGCL 210

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  297 bits (763), Expect = e-104
 Identities = 138/170 (81%), Positives = 155/170 (91%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +PL K+KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAV+VYD+ N  SF  TS+WI++VRTERG DVII+LVGNKT
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           DL DKRQVS EEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGM+
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMD 179

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  281 bits (722), Expect = 5e-98
 Identities = 67/174 (38%), Positives = 106/174 (60%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           +   S + + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+   +   + 
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
            +WDTAGQERF SL P Y R S+ AVIVYD+  + SF    +W++E++     ++++ + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           GNK DL D R+V +++    A+  G + +ETSAK   NI+ LF+ I+  +P ++
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  279 bits (716), Expect = 2e-97
 Identities = 72/177 (40%), Positives = 117/177 (66%)

Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A+ +     KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ +
Sbjct: 5   AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFE 64

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
           +WDTAGQER+ SL P Y R ++ A+IV+DV N+ SF    +W++E++ +   ++++ L G
Sbjct: 65  IWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG 124

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSS 178
           NK+DL+D R+V+ E+    A+E G+ F+ETSAK   N+K +F +IA  LP ++   +
Sbjct: 125 NKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  274 bits (703), Expect = 2e-95
 Identities = 68/167 (40%), Positives = 110/167 (65%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  274 bits (703), Expect = 2e-95
 Identities = 66/167 (39%), Positives = 97/167 (58%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A+IVYD+   ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL D R+V   +    A     +F+ETSAK   NI  LF +I+  +P
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  261 bits (669), Expect = 3e-90
 Identities = 64/162 (39%), Positives = 99/162 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF+  +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+ +  SF     W++E+R   G ++ + +VGNK DL  +
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           R VSI+E +  A+  G     TSAK    I+ LF  +   + 
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  260 bits (668), Expect = 4e-90
 Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 4/174 (2%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR-TVRLQLW 63
           S + + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L     V LQ+W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61

Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVIIVLV 120
           D  GQ     ++  YI  +   ++VYD+ N QSF N   W   +++V  E     ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           GNK DL   R +  E+     +E G      SAK G ++   F+K+AA + G++
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  253 bits (649), Expect = 3e-87
 Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            F ++  +Y R +   V+V+   +R+SF   S W E+V  E  GD+   LV NK DL+D 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
             +  EE +G AK   + F  TS K   N+  +F+ +A   
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  248 bits (635), Expect = 1e-84
 Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 7/202 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT----ERGGDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV    +F     W +E           +   V++GNK D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMV 185
           L +++  +         +  + + ETSAK   N++  F+ IA      ET      E   
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 188

Query: 186 DVNLKPTVNSSQTEQQGGGCAC 207
            + L       + +     C+C
Sbjct: 189 PIKLDKN---ERAKASAESCSC 207

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  231 bits (591), Expect = 4e-78
 Identities = 66/167 (39%), Positives = 95/167 (56%), Gaps = 6/167 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           RFRS+  SY R +   +++YDV   +SFLN   W++ +       V I+LVGNK D+ D 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148

Query: 129 -----KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
                ++ V    G+  A  +G +F ETSAK G NI      +A  +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  230 bits (587), Expect = 6e-78
 Identities = 72/168 (42%), Positives = 109/168 (64%), Gaps = 3/168 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           GQERF SL P Y R++  A++VYDV   QSF+    W++E+  +   D+II LVGNK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 127 V---DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           +    +R+V+ EEG+  A+E G++F ETSAK G N+  +F  I   +P
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  230 bits (590), Expect = 6e-78
 Identities = 70/162 (43%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++ YD+  R SFL+   WIE+VR   G +++ +L+GNK+DL + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 130 RQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIAAAL 170
           R+VS+ E    A+ + ++  IETSAK   N++  F ++A  L
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  229 bits (587), Expect = 4e-77
 Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 6/203 (2%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
            A   P  ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++ 
Sbjct: 7   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF 66

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
            +WDTAGQE+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL 
Sbjct: 67  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLC 125

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
           GNK D+ D++     +     ++  + + + SAK+ +N +  F  +A  L G   L    
Sbjct: 126 GNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183

Query: 181 QEDMV--DVNLKPTVNSSQTEQQ 201
              +   +V + P +  +Q E  
Sbjct: 184 MPALAPPEVVMDPALA-AQYEHD 205

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  227 bits (580), Expect = 2e-76
 Identities = 71/198 (35%), Positives = 109/198 (55%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D +   Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV +++SF     W++E+       V+ +LVGNK DL DK
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNL 189
           R V  +     A    + F+ETSA    N++  F  +A  +    +  +  +      + 
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 188

Query: 190 KPTVNSSQTEQQGGGCAC 207
                  Q+    GGC C
Sbjct: 189 GNVNLKGQSLTNTGGCCC 206

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  226 bits (577), Expect = 8e-76
 Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 9/171 (5%)

Query: 10  YKLVFLGDQSVGKTSIITRFMY--DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW--DT 65
            K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D TV ++L+  DT
Sbjct: 21  CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG---DVIIVLVGN 122
           AG + ++  I  Y      A++V+DV++ +SF +   W E +++ R      +  VLV N
Sbjct: 81  AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140

Query: 123 KTDLVDKR-QVSIEEGDGKAKEFGVMFIETSAKA-GFNIKPLFRKIAAALP 171
           KTDL  +R QV ++     A    + F + SA   G +    F  IA    
Sbjct: 141 KTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  222 bits (567), Expect = 3e-74
 Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 1/193 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIG-IDFLSKTMYLEDRTVRLQLWDTAGQ 68
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G ++     +  +   ++  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           E+   L   Y   +S A++ +DV +R +  N +RW++E +   G +  IV+  NK D+ +
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVN 188
           ++++S +      K     + E SAK   N    F  +A    G   L      ++    
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191

Query: 189 LKPTVNSSQTEQQ 201
           +    +S +  + 
Sbjct: 192 VNYDYHSPEESKY 204

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  219 bits (561), Expect = 1e-73
 Identities = 64/161 (39%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+AN++SF     W  +++T    +  ++LVGNK DL D+
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  E+G   A + G  F E SAK   N+K +F ++   +
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  219 bits (559), Expect = 3e-73
 Identities = 62/194 (31%), Positives = 119/194 (61%), Gaps = 9/194 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R +  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA---------ALPGMETLSSTK 180
           R V  +E    A++  + FIETSA    N++  F+ I            +        + 
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 185

Query: 181 QEDMVDVNLKPTVN 194
             ++VD+++ PT +
Sbjct: 186 GNNVVDISVPPTTD 199

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  219 bits (559), Expect = 7e-73
 Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 18/223 (8%)

Query: 1   MASVSPLAKY----KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR 56
           M+S      Y    K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E +
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 57  TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI 116
            ++ Q+WDTAGQER+R++  +Y R +  A+IVYD++   S+ N + W+ E+R     +V 
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA 120

Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL------ 170
           + L+GNK+DL   R V  EE    A+E  ++F ETSA    N+   F ++   +      
Sbjct: 121 VGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSK 180

Query: 171 --------PGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGC 205
                         +     +   ++L PT N ++       C
Sbjct: 181 HQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  216 bits (554), Expect = 7e-73
 Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 2/162 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             +K++ +G+  VGK+++   F   + D  ++     D   + + ++   V L ++D   
Sbjct: 1   GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60

Query: 68  QERFRSLIPS-YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTD 125
           Q      +    ++     +IV+ V +R+SF      +  +R  R    + ++LVGNK+D
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           L   R+VS+EEG   A       IETSA    N + LF    
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 162

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  217 bits (555), Expect = 8e-73
 Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT----ERGGDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV N  SF N   W +E               V++GNK 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 125 DLVD-KRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIAAAL 170
           D  + K+ VS +     AK  G +    TSAK   N+   F +IA + 
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  218 bits (557), Expect = 8e-73
 Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 1/193 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ N +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA-LPGMETLSSTKQEDMVDVN 188
           R VS E G   A   G  F E SAK   N+K  F ++       M     T    +    
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAK 188

Query: 189 LKPTVNSSQTEQQ 201
             P +   Q    
Sbjct: 189 QGPQLTDQQAPPH 201

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  217 bits (555), Expect = 1e-72
 Identities = 58/161 (36%), Positives = 109/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  +E    A++ G+ FIETSA    N++  F+ I   +
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  217 bits (556), Expect = 1e-72
 Identities = 65/161 (40%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  216 bits (553), Expect = 1e-72
 Identities = 59/161 (36%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V+ EE    A+E G++F+E SAK G N++  F + A  +
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  217 bits (554), Expect = 2e-72
 Identities = 64/161 (39%), Positives = 98/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF     W+ E+       VI VLVGNK DL ++
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+VS +  +  ++   + ++ETSAK   N++ LF  +A  L
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  216 bits (553), Expect = 2e-72
 Identities = 55/161 (34%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F    + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +  A++V+D+   Q++    RW++E+       ++++LVGNK+DL   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+V  EE    A+  G++F+ETSA    N++  F  +   +
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  216 bits (552), Expect = 4e-72
 Identities = 60/161 (37%), Positives = 105/161 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+V+  E    A+E  +MF+ETSA  G N++  F K A  +
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  216 bits (551), Expect = 6e-72
 Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 40/204 (19%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTV------ 58
              + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D  +      
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 59  -------------------------------RLQLWDTAGQERFRSLIPSYIRDSSVAVI 87
                                          +  +WDTAGQER+ S++P Y R ++ A++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 88  VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM 147
           V+D++N  +      W+ +++     + II+LV NK D  +K QV I E    A++  ++
Sbjct: 123 VFDISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLL 179

Query: 148 FIETSAKAGFNIKPLFRKIAAALP 171
           FI+TSAK G NIK +F  +A  + 
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEEIY 203

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  215 bits (549), Expect = 7e-72
 Identities = 59/161 (36%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF      TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+V+  E    A+E  +MF+ETSA  G N++  F + A  +
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  215 bits (549), Expect = 1e-71
 Identities = 65/161 (40%), Positives = 103/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R +   ++VYDV +++SF N  +W++E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V        A   G+ F+ETSAK   N++  F  +AA +
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  214 bits (547), Expect = 1e-71
 Identities = 70/161 (43%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ N +SF N   WI  +      DV  +++GNK D+ DK
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           RQVS E G+  A ++G+ F+ETSAKA  N++  F  +A  +
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  214 bits (548), Expect = 1e-71
 Identities = 60/161 (37%), Positives = 107/161 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+E+ R     +++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  EEG+  A+E G++F+ETSAK   N++  F   A  +
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  214 bits (546), Expect = 3e-71
 Identities = 60/161 (37%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ N +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  E+G   A++ G  F E SAK   +++  F ++  A+
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  212 bits (542), Expect = 7e-71
 Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYDV + +SF+N  RW+ E+  +   DV  +LVGNK D  ++
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPER 128

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           + V  E+    A + G+   ETSAK   N++ +F  I   +
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  211 bits (539), Expect = 1e-70
 Identities = 63/161 (39%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ + ++F N  +W + V      +  ++LVGNK+D+ + 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A  +
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  211 bits (539), Expect = 2e-70
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV N+ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           +R V  E+G+  AKE+G+ F+ETSAK G N+   F  IA  L
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  211 bits (539), Expect = 3e-70
 Identities = 57/162 (35%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF S+  +Y R +   ++VYD+  +++F +  +W++ +      D  ++LVGNK D    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 130 RQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+++ ++G+  A++  G+ F E SAK  FN+  +F K+   +
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  211 bits (538), Expect = 9e-70
 Identities = 67/191 (35%), Positives = 113/191 (59%), Gaps = 4/191 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYDV + ++F N  +W + V      +  ++LVGNK+D+ + 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL---PGMETLSSTKQEDMVD 186
           R V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A  +        L         +
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGN 199

Query: 187 VNLKPTVNSSQ 197
           +++     +S 
Sbjct: 200 ISINSGSGNSS 210

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  209 bits (535), Expect = 1e-69
 Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 5/166 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 70  RFR-SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ N  SF +   WIEE +      D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKA---GFNIKPLFRKIAAAL 170
              QV  +     A    +   ETSAK      +++ +F  +A  L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  209 bits (534), Expect = 2e-69
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 2/160 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  RFRSLIPS-YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTDLV 127
                +    ++     +IV+ V +R+SF      +  +R  R    + ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
             R+VS+EEG   A       IETSA    N + LF    
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  209 bits (534), Expect = 2e-69
 Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 2/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVD 128
           RFR+L PSY R +   ++VYDV  R +F+    W+ E+ T     D++ +LVGNK D  +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            R+V   EG   A++  ++FIE SAK    ++  F ++   +
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  208 bits (531), Expect = 3e-69
 Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 8/172 (4%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S L  +K++ LGD  VGK+S++ R++ +KFDT    TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT----ERGGDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V + QSF N S W +E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIA 167
            V++GNK D+  +RQVS EE     ++ G   + ETSAK   N+   F +  
Sbjct: 119 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  208 bits (532), Expect = 7e-69
 Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ ++QSFLN   W+ +++      +  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           L+GNK DL D+R+V+  +    A ++G+ + ETSA  G N++     +   +
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  206 bits (527), Expect = 1e-68
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 15/180 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTT--YQATIGIDFLSKTMYLED---RTVRLQLW 63
           + KL+ +G+   GKT+++ + M  K        AT+GID     + + D   R + L +W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGN 122
           D AG+E F S  P ++   ++ + VYD++  Q+ ++    W+  ++  R     ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-ARASSSPVILVGT 120

Query: 123 KTDLVDKRQ---VSIEEGDGKAKEFGVMFI-----ETSAKAGFNIKPLFRKIAAALPGME 174
             D+ D++Q      +       + G   I       + +    +  L + I       +
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  206 bits (526), Expect = 3e-68
 Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------DRTVR 59
            K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIV 118
           LQLWDTAG ERFRSL  ++ RD+   ++++D+ N QSFLN   WI +++      +  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           L GNK+DL D+R V  EE    A+++G+ + ETSA  G NI      +   +
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  203 bits (518), Expect = 3e-67
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGS 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDL 126
            +F ++    I      ++VY + +RQS        E++   +G    + I+LVGNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
              R+V   E +  A+ +   F+ETSAK   N+K LF+++ 
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  202 bits (516), Expect = 5e-67
 Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           + YK++ LG   VGK+++   F     D       G  +  +++ ++     L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTDL 126
           Q+  R L    +      VIVY V ++ SF   S    ++R  R  D V I+LVGNK+DL
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           V  R+VS++EG   A  F   FIETSA    N++ LF  + 
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  201 bits (512), Expect = 7e-66
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 9/173 (5%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRF--MYDKFDTTYQATIGIDFLSKTMYLEDRTV 58
           ++S S    Y++V +G+Q VGK+++   F  ++D  D+  +     D   +T+ ++  + 
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESA 87

Query: 59  R---LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD- 114
               L +W+  G+  +  L    ++     +IVY + +R SF   S    ++R  R  + 
Sbjct: 88  TIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 145

Query: 115 VIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           + I+LVGNK+DLV  R+VS+ EG   A  F   FIETSA    N+K LF  I 
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  199 bits (509), Expect = 1e-65
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 2/166 (1%)

Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
            +  +   K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L
Sbjct: 18  GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHL 76

Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVG 121
            DTAGQ+ +  L  S+I      V+VY V +  SF       +++    G   V +VLVG
Sbjct: 77  VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           NK DL  +R+V   EG   A+ +G  F+E+SA+     + +F K+ 
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  198 bits (506), Expect = 2e-65
 Identities = 56/167 (33%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
            S + LA +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ 
Sbjct: 11  GSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQID 69

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLV 120
           + DTAGQE + ++  +Y R     + V+ +   +SF  T+ + E++   +  + V  +LV
Sbjct: 70  ILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLV 129

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           GNK+DL DKRQVS+EE   +A+++ V ++ETSAK   N+  +F  + 
Sbjct: 130 GNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  207 bits (529), Expect = 6e-65
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 12/187 (6%)

Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL-------- 53
            ++  L + K+  +GD   GKTS++ + + + FD     T G++ ++K            
Sbjct: 34  EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93

Query: 54  EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG 113
           E +      WD  GQE   +    ++  SSV +++ D    ++  N   W+  +  + GG
Sbjct: 94  ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIE-KYGG 149

Query: 114 DVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM 173
              +++V NK D      +  ++ + +       F   S K G  ++ + + + +A+   
Sbjct: 150 KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209

Query: 174 ETLSSTK 180
           +++  T 
Sbjct: 210 DSIYGTP 216

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  195 bits (498), Expect = 3e-64
 Identities = 55/162 (33%), Positives = 96/162 (59%), Gaps = 2/162 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTD 125
           GQE + ++  +Y R     + V+ +   +SF  T+ + E++   +  + V  +LVGNK+D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           L DKRQVS+EE   +A ++ V ++ETSAK   N+  +F  + 
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  195 bits (497), Expect = 6e-64
 Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 2/179 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
                 K+  LG +SVGK+S+  +F+  +F  +Y  TI   F +K + +  +   LQL D
Sbjct: 2   PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVD 60

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNK 123
           TAGQ+ +     +Y  D +  ++VY V + +SF        ++    G   + I+LVGNK
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120

Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQE 182
            DL  +R +S EEG   A+ +   F+E+SAK       +FR+I      M+   S  + 
Sbjct: 121 KDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  194 bits (495), Expect = 6e-64
 Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 2/162 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + N+QSF +     +++   +  + V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           L  +R+VS  EG   A+E+G  F+ETSAK+   +  LF +I 
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  194 bits (495), Expect = 8e-64
 Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 4/164 (2%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +A Y++V LGD  VGKTS+ + F   +    +   +G D   +T+ ++     L + DT 
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTW 60

Query: 67  GQERFRSLIP--SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNK 123
             E+        S ++  S  VIVY +A+R SF + S    ++R     D V I+LVGNK
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120

Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            DL   R+VS+EEG   A  F   FIETSA    N+  LF  + 
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVV 164

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  194 bits (495), Expect = 3e-63
 Identities = 63/211 (29%), Positives = 111/211 (52%), Gaps = 13/211 (6%)

Query: 1   MASVSPLAK-----YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED 55
           MA+  P  +     +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+ 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD- 114
             V++ + DTAGQE + ++  +Y R     + V+ +   +SF  T+ + E++   +  + 
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119

Query: 115 VIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGME 174
           V  +LVGNK+DL DKRQVS+EE   +A+++ V ++ETSAK   N+  +F  +        
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMRE----- 174

Query: 175 TLSSTKQEDMVDVNLKPTVNSSQTEQQGGGC 205
            + + K ED  + N K    S     +   C
Sbjct: 175 -IRARKMEDSKEKNGKKKRKSLAKRIRERCC 204

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  187 bits (478), Expect = 4e-61
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 2/166 (1%)

Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
              P   +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL +
Sbjct: 3   DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDI 61

Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVG 121
            DTAGQE F ++   Y+R     ++V+ + +RQSF    +   ++   +  D   +VLVG
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           NK DL  +RQV   E         V + E SAK   N+   F ++ 
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  187 bits (478), Expect = 6e-61
 Identities = 52/198 (26%), Positives = 96/198 (48%), Gaps = 12/198 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F  TY  TI   +  + +  +     LQ+ DT G  
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSH 67

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR--TERGGDVIIVLVGNKTDLV 127
           +F ++    I      ++V+ V ++QS        + +        D+ ++LVGNK D  
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE- 126

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDV 187
            +R+V   E    A+E+   F+ETSAK  +N+K LF+++            T++   +++
Sbjct: 127 TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE--------TRRNMSLNI 178

Query: 188 NLKPTVNSSQTEQQGGGC 205
           + K +    +T++  G C
Sbjct: 179 DGKRSGKQKRTDRVKGKC 196

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  184 bits (470), Expect = 7e-60
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRT---VRLQL 62
           +  Y++V +G+Q VGK+++   F        +    +G D   +T+ ++  +   + L +
Sbjct: 4   MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63

Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVG 121
           W+  G+  +  L    ++     +IVY + +R SF   S    ++R  R  + + I+LVG
Sbjct: 64  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           NK+DLV  R+VS+ EG   A  F   FIETSA    N+K LF  I 
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIV 167

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  184 bits (469), Expect = 1e-59
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 3/165 (1%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             L  YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + D
Sbjct: 14  ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLD 72

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNK 123
           TAGQE F ++   Y+R     +IVY V ++ SF +  R+ + +   +  +   ++LV NK
Sbjct: 73  TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANK 132

Query: 124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG-FNIKPLFRKIA 167
            DL+  R+V+ ++G   A ++ + +IETSAK    N+   F  + 
Sbjct: 133 VDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  179 bits (458), Expect = 3e-58
 Identities = 48/162 (29%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F      TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E+++  +  D V +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           L   R V   +    A+ +G+ +IETSAK    ++  F  + 
Sbjct: 120 L-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  180 bits (459), Expect = 4e-58
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
           S++  A+ KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++
Sbjct: 22  SMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEI 80

Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVG 121
            DTAGQE        ++R     V+VYD+ +R SF         +   ++  +V ++LVG
Sbjct: 81  LDTAGQEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-NIKPLFRKIA 167
           NK DL   RQVS EEG+  A E    F E SA  G  NI  +F ++ 
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 186

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  180 bits (458), Expect = 6e-58
 Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 4   VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLW 63
              + +YKLV +G   VGK+++  + + + F   Y  TI   +  K + ++  T  L + 
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 74

Query: 64  DTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGN 122
           DTAGQE + ++   Y+R     + V+ + N +SF + + + E+++  +  D V +VLVGN
Sbjct: 75  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134

Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           K DL   R V  ++    AK +G+ FIETSAK    ++  F  + 
Sbjct: 135 KCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  176 bits (450), Expect = 4e-57
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI   +  K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY +  + +F +     E++   +  + V ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 DKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIA 167
           D+R V  E+G   A+++    F+E+SAK+  N+  +F  + 
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  177 bits (451), Expect = 7e-57
 Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 6/169 (3%)

Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
                 +  L  LG +  GK+++  +F+  +F + Y   +   + S    ++ + V L++
Sbjct: 15  YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRV 73

Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG---DVIIVL 119
            DTA  +  R+    Y+  +   ++VY V +RQSF ++S ++E +          +  +L
Sbjct: 74  MDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132

Query: 120 VGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-NIKPLFRKIA 167
           +GNK D+   RQV+  EG   A  FG +F E SA   F +++ +F +  
Sbjct: 133 LGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  176 bits (449), Expect = 1e-56
 Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 3/160 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F   Y  TI   +  K + ++  T  L + DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + N +SF +   + E+++  +  + V +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
             R V  ++    A+ +G+ FIETSAK    +   F  + 
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  161 bits (411), Expect = 6e-51
 Identities = 29/163 (17%), Positives = 69/163 (42%), Gaps = 11/163 (6%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + K+  +G+ S GK++++ R++   +     +  G  F  K + ++ ++  L + D  G 
Sbjct: 20  ELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGP 77

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDL- 126
              +     +       V V+ + +  SF     +   + + R    + +VLVG +  + 
Sbjct: 78  PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132

Query: 127 -VDKRQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIA 167
             + R +        + +     + ET A  G N++ +F+ +A
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVA 175

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  158 bits (401), Expect = 1e-49
 Identities = 35/171 (20%), Positives = 71/171 (41%), Gaps = 13/171 (7%)

Query: 3   SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQL 62
           S+  + + +L  LGD   GK+S+I RF+   +    + T   +   K M ++ +T  + +
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLI 58

Query: 63  WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-----VII 117
            + AG    +     +   +   + V+ + +  SF   SR   ++ + RG       + +
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 118 VLVGNKTDLVDKRQVSIEEGDG-KAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           V   ++      R V         A      + ET A  G N+  +F+++A
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  155 bits (393), Expect = 3e-48
 Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 7/171 (4%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +     K+V +GD +VGKT ++  F   +  T Y  T+  +F S  M  ++    L LWD
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWD 77

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK 123
           TAGQE +  L P    DS V ++ + V NR SF N +++W  E++         VLVG K
Sbjct: 78  TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLK 136

Query: 124 TDLVDKRQ--VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
            DL       V+ +EGD   ++ G V +IE S+ A   +  +F K +    
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  142 bits (361), Expect = 1e-43
 Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 15/182 (8%)

Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
            S+S     K V +GD +VGKT ++  +  + F T Y  T+  +F S  + +   TV L 
Sbjct: 1   GSMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLV 120
           LWDTAGQE +  L P   R + V ++ + + ++ S+ N + +WI E++      V IVLV
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLV 118

Query: 121 GNKTDLVDKRQ----------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAA 168
           G K DL D +Q          ++  +G+   K  G   +IE S+K+  N+K +F   I  
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRV 178

Query: 169 AL 170
            L
Sbjct: 179 VL 180

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  141 bits (357), Expect = 1e-42
 Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V +I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149

Query: 129 -----------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
                         ++  +G   AKE G V ++E SA     +K +F + I A L
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  140 bits (355), Expect = 3e-42
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  +     + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLV 127
           E +  L P    D+ V ++ + + +  S  N   +W  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 142

Query: 128 D------------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
                        +  V  EEG   A       ++E SAK    ++ +F     A L
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  140 bits (354), Expect = 6e-42
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           + +S     K V +GD +VGKT ++  +  +KF T Y  T+  D  S  + ++ + V L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLG 60

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLV 120
           LWDTAGQE +  L P   R + + V+ + + ++ S+ N   +W+ E+R     +V IVLV
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLV 119

Query: 121 GNKTDLVD--------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF 163
           G K DL D           ++  +G+   K+ G   +IE S+K   N+K +F
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  139 bits (352), Expect = 9e-42
 Identities = 54/175 (30%), Positives = 87/175 (49%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   +    + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDD 94

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           +  L P +  D+SV ++ +DV +  SF N  +RW  EV       V I++VG KTDL   
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153

Query: 130 RQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
           +             V+   G   A+  G V ++E SA+   N+  +F++    AL
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  138 bits (350), Expect = 2e-41
 Identities = 54/181 (29%), Positives = 86/181 (47%), Gaps = 17/181 (9%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +     K V +GD +VGKTS++  +  + + T Y  T   D  S  + ++ R VRLQL D
Sbjct: 16  AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCD 74

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNK 123
           TAGQ+ F  L P    ++ + ++ + V +  SF N   +W+ E+R        I+LVG +
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILVGTQ 133

Query: 124 TDLVDKRQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAA 169
           +DL +  +            V  E     A+E     +IE SA    N+K +F   I A 
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG 193

Query: 170 L 170
           +
Sbjct: 194 I 194

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  137 bits (346), Expect = 5e-41
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 17/181 (9%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             + + KLV +GD + GKT ++  F  D+F   Y  T+  ++    + ++ + V L LWD
Sbjct: 21  QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWD 79

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK 123
           TAGQE +  L P    D+ V ++ + V +  S  N   +W+ EV+     +V I+LV NK
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANK 138

Query: 124 TDLVDKRQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAA 169
            DL                 V  ++G   A       ++E SAK    ++ +F     AA
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198

Query: 170 L 170
           L
Sbjct: 199 L 199

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  135 bits (342), Expect = 1e-40
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLV 127
             + ++ P    DS   +I +D++  ++  +   +W  E++ E   +  ++LVG K+DL 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 124

Query: 128 D------------KRQVSIEEGDGKAKEFG-VMFIETSAKAG-FNIKPLFRK-IAAAL 170
                        +  VS ++G   AK+ G   +IE SA     +++ +F     A +
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  133 bits (335), Expect = 2e-39
 Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 17/185 (9%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVL 119
            L+DTAGQE +  L P     + V +I + V N  SF N    W+ E++ E   +V  +L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLL 127

Query: 120 VGNKTDLVDKRQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK- 165
           +G + DL D  +            + +E+G   AKE G   ++E SA     +K +F + 
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

Query: 166 IAAAL 170
           I A L
Sbjct: 188 IIAIL 192

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  131 bits (331), Expect = 6e-39
 Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 17/175 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD- 128
           +  L P     + V++I + + +  SF N  ++W  EVR     +  I+LVG K DL D 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124

Query: 129 -----------KRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
                         ++  +G   AKE G V ++E SA     +K +F + I A L
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  129 bits (326), Expect = 6e-38
 Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 18/182 (9%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L LWD
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWD 81

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNK 123
           T+G   + ++ P    DS   ++ +D++  ++  +   +W  E+  +      ++L+G K
Sbjct: 82  TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRVLLIGCK 140

Query: 124 TDLVD------------KRQVSIEEGDGKAKEFG-VMFIETSAKAG-FNIKPLFRK-IAA 168
           TDL              +  +S E+G   AK+ G  +++E SA     +I  +FR     
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200

Query: 169 AL 170
            L
Sbjct: 201 CL 202

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  129 bits (326), Expect = 6e-38
 Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLV 127
             + ++ P    DS   +I +D++  ++  +   +W  E++ E   +  ++LVG K+DL 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 145

Query: 128 D------------KRQVSIEEGDGKAKEFG-VMFIETSAKAG-FNIKPLFRK-IAAAL 170
                        +  VS ++G   AK+ G   +IE SA     +++ +F     A +
Sbjct: 146 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 203

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  100 bits (251), Expect = 9e-26
 Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 17/176 (9%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
            +  L P     + V +I + + +  SF +  ++W  EVR     +  I+LVG K DL D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 273

Query: 129 KRQ------------VSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRK-IAAAL 170
            +             ++  +G   AKE G V ++E SA     +K +F + I A L
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 29/217 (13%), Positives = 70/217 (32%), Gaps = 66/217 (30%)

Query: 16  GDQSVGKTSIITRFM---YDKFDTTYQATIG-IDFLSKTM--------------YLEDRT 57
           G   +GK+ +  RF+    D+F   + + +   DF  + +                +   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 58  VRLQLW-------DTAGQERFRSLIPSYIRDSSV-------------------------- 84
            ++ +        D   Q    + +  YI+ ++                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 85  -----------AVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKR 130
                       ++  DV+    ++F +  +++  +  +       IV+V  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            +        +K+  +  +ETSA++  N+   F  + 
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLV 250

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 75.2 bits (185), Expect = 3e-17
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 23/156 (14%)

Query: 1   MASVSPLAK---YKLVFLGDQSVGKTSII----------TRFMYDKFDTTYQATIGIDFL 47
           M++++   +   +K+V+ G    GKT+ +           +       T  + T+  DFL
Sbjct: 3   MSTINFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL 62

Query: 48  SKTM-YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD------VANRQSFLNT 100
              +  ++    R  L+   GQ  + +     +R     V V D       AN +S  N 
Sbjct: 63  PLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM 122

Query: 101 SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE 136
              + E         I++ V NK DL     + +E 
Sbjct: 123 RENLAEYGLTLDDVPIVIQV-NKRDL--PDALPVEM 155

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 72.3 bits (177), Expect = 2e-15
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 26/191 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKF---DTTY-QATIGIDFLSKTMYLEDRTVRLQLWD 64
             KL+ +G    GK+S+    ++  +   DT    ATI ++            + L LWD
Sbjct: 3   GSKLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWD 58

Query: 65  TAGQERF-----RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVI 116
             GQ+ F             +   V + V+DV + +   +   +   ++++R       I
Sbjct: 59  CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI 118

Query: 117 IVLVGNKTDLV--DKRQVSIEEGDGKAKEF-------GVMFIETSAKAGFNIKPLFRKIA 167
            VL+ +K DLV  DKR+   +       E         ++   TS       K   + + 
Sbjct: 119 FVLL-HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVC 177

Query: 168 AALPGMETLSS 178
           + +P M    S
Sbjct: 178 SLIPNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 68.1 bits (166), Expect = 2e-14
 Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 23/165 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYD---KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           K +++ +G +  GK+SI     +          ++T  I    K        V  Q+WD 
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY---KDDISNSSFVNFQIWDF 76

Query: 66  AGQERFRSL---IPSYIRDSSVAVIVYDVANR--QSFLNTSRWIEEVRTERGGDVIIVLV 120
            GQ  F           R +   + V D  +   ++       + +           V +
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 121 GNKTDLV--DKRQVSIEE---------GDGKAKEFGVMFIETSAK 154
            +K D +  D +  +  +          D   ++  + F  TS  
Sbjct: 137 -HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIY 180

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +  TT   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV-GNKTDL 126
           ++ R L   Y +++   + V D  +R+    ++  ++++  E      ++LV  NK D+
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.7 bits (148), Expect = 5e-12
 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +  TT   TIG  F  +T  +  + ++ Q+WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGL 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
              R     Y  ++   + V D  +R         I   ++E             I+V+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVF 114

Query: 121 GNKTDL 126
            NK D+
Sbjct: 115 ANKQDM 120

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.7 bits (148), Expect = 7e-12
 Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K +++ LG  + GKTSI+ R       TT   T+G     +T  L+ + +  ++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
              R     Y  D+   + V D  +R         +   + E             ++++ 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLLIF 129

Query: 121 GNKTDL 126
            NK DL
Sbjct: 130 ANKQDL 135

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.3 bits (147), Expect = 8e-12
 Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 19/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G  F  +   +    V ++LWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
            RFRS+   Y R  S  V + D A+++        IE  + E        +   + ++++
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNELHNLLDKPQLQGIPVLVL 130

Query: 121 GNKTDL 126
           GNK DL
Sbjct: 131 GNKRDL 136

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 23/162 (14%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ LG    GKT+I+ R    +  TT + TIG  F  +T  L  + ++L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLVG 121
             R     Y  D++  + V D  ++         +     E           D  +++  
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKD-------RMSTASKELHLMLQEEELQDAALLVFA 126

Query: 122 NKTDLVDKRQVS-IEE--GDGKAKEFGVMFIETSAKAGFNIK 160
           NK D       S + +     + K+     + +SA  G  I 
Sbjct: 127 NKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  DT    T+G  F  KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQ 72

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A+RQ   +  R ++ +   ER     +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132

Query: 128 DKRQVS-IEE--GDGKAKEFGVMFIETSAKAGFNIK 160
                + I+E       +         SA  G ++ 
Sbjct: 133 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 20/124 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT   TIG  F  +T  +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLVGN 122
            R L   Y +++   + V D  +R+        + E R E           D ++++  N
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 109

Query: 123 KTDL 126
           K DL
Sbjct: 110 KQDL 113

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAG 67
           +  ++F+G    GKT +  R +  ++  T Q +I     S       +R   L L D  G
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPG 63

Query: 68  QERFR-SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR---------TERGGDVII 117
            E  R  L+  +   +   V V D A  Q      R +++V          +    +   
Sbjct: 64  HESLRFQLLDRFKSSARAVVFVVDSAAFQ------REVKDVAEFLYQVLIDSMALKNSPS 117

Query: 118 VLV-GNKTDLVD 128
           +L+  NK D+  
Sbjct: 118 LLIACNKQDIAM 129

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+       T+     S+   L    +    +D  G 
Sbjct: 25  TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGH 79

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
            + R +  +Y+   +  V + D A+ +        + E + E           +V I+++
Sbjct: 80  IQARRVWKNYLPAINGIVFLVDCADHE-------RLLESKEELDSLMTDETIANVPILIL 132

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 133 GNKIDR 138

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++   T   TIG     +   +     R  +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
           E  RS   +Y  ++   ++V D  +R+        I   R E              +++ 
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRER-------ISVTREELYKMLAHEDLRKAGLLIF 123

Query: 121 GNKTDL 126
            NK D+
Sbjct: 124 ANKQDV 129

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 58.0 bits (141), Expect = 6e-11
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 23/163 (14%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +        T G  F  K+  ++ +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
            + R    SY  ++ + + V D A+R+         EE   E        +   V +++ 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRK-------RFEETGQELTELLEEEKLSCVPVLIF 123

Query: 121 GNKTDLVDKRQVS-IEE--GDGKAKEFGVMFIETSAKAGFNIK 160
            NK DL+     S I E       ++        SA  G  ++
Sbjct: 124 ANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 27/175 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++   T   TIG     +   +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 75

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
           E  RS   +Y  ++   ++V D  +R+        I   R E              +++ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRER-------ISVTREELYKMLAHEDLRKAGLLIF 128

Query: 121 GNKTDLVDKRQVSIEE-----GDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            NK D+ +   +++ E          K+         A  G  +      + + L
Sbjct: 129 ANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KL+FLG  + GKT+++     D+  T  Q T      S+   L    ++   +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGH 77

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
            + R L   Y  + +  V + D A+ +         +E R E           DV  V++
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADPE-------RFDEARVELDALFNIAELKDVPFVIL 130

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 131 GNKIDA 136

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 22/129 (17%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +  ++ LG  + GKT+II +       +     TIG  F  +    +  ++   ++D +G
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSG 76

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE----------RGGDVII 117
           Q R+R+L   Y ++    + V D ++R         +   + E          +   + I
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRL-------RMVVAKEELDTLLNHPDIKHRRIPI 129

Query: 118 VLVGNKTDL 126
           +   NK DL
Sbjct: 130 LFFANKMDL 138

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 19/132 (14%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +  ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPG 64

Query: 68  QERFRSLIPSYIRDSSVAV--IVY--DVANRQSFLNTSR-------WIEEVRTERGGDVI 116
             + R  +  Y++  +  V  +++  D       L T+         I E   E G D++
Sbjct: 65  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124

Query: 117 IVLVGNKTDLVD 128
           I    NK++L  
Sbjct: 125 I--ACNKSELFT 134

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 55.5 bits (134), Expect = 6e-10
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 19/129 (14%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVK 103

Query: 71  FRSLIPSYIRDSSVAV--IVY--DVANRQSFLNTSR-------WIEEVRTERGGDVIIVL 119
            R  +  Y++  +  V  +++  D       L T+         I E   E G D++I  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI-- 161

Query: 120 VGNKTDLVD 128
             NK++L  
Sbjct: 162 ACNKSELFT 170

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 27/162 (16%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKF---DTTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +G +  GK+SI  + ++      DT Y ++T        +       + L + +  G
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 68  QERFRSL---IPSYIRDSSVAVIVYDVAN--RQSFLNTSRWIEEVRTERGGDVIIVLVGN 122
           Q  +           +     V V D  +    +  N +  IE          I VL+ +
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLI-H 114

Query: 123 KTDLVD-----------KRQVSIEEGDGKAKEFGVMFIETSA 153
           K D +             ++   E  +       V F  TS 
Sbjct: 115 KVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI 156

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +  TT   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQ 219

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE--------RGGDVIIVLV 120
           ++ R L   Y +++   + V D  +R+        + E R E           D ++++ 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRE-------RVNEAREELMRMLAEDELRDAVLLVF 272

Query: 121 GNKTDL 126
            NK DL
Sbjct: 273 ANKQDL 278

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 102 RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP 161
             +   + E     ++V+  NK D++ ++   ++        +    +  SA        
Sbjct: 131 DVVNLFK-EMEIPFVVVV--NKIDVLGEKAEELKGL--YESRYEAKVLLVSALQKKGFDD 185

Query: 162 LFRKIAAALP 171
           + + I+  LP
Sbjct: 186 IGKTISEILP 195

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 45.5 bits (109), Expect = 4e-06
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 82  SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA 141
           + V  +V+ V  R         +        G V I+LVGNK D     + +++      
Sbjct: 85  ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELL 144

Query: 142 KEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            E     +  SA     +  L   + A +P
Sbjct: 145 PEAEPRML--SALDERQVAELKADLLALMP 172

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 17/131 (12%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV 107
              +L DTAG        E     RS     + ++ + + + D+   +     +   E  
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRRSR--MKMAEADLILYLLDLGTERLDDELTEIRELK 338

Query: 108 RTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
                   + V   NK D        I      A   G   I  SA  G  I  L + + 
Sbjct: 339 AAHPAAKFLTVA--NKLDRAANADALIRA---IADGTGTEVIGISALNGDGIDTLKQHMG 393

Query: 168 AALPGMETLSS 178
             +  ++ L  
Sbjct: 394 DLVKNLDKLHE 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 29/134 (21%)

Query: 23  TSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-ERFRSLIPSYIRD 81
             ++ +F+ +     Y       FL   +  E R         +     +         D
Sbjct: 76  EEMVQKFVEEVLRINY------KFLMSPIKTEQR-------QPSMMTRMYIEQRDRLYND 122

Query: 82  SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG----NKTDLVDK--RQVSIE 135
           + V    Y+V+  Q +L   + + E+R  +     +++ G     KT +         ++
Sbjct: 123 NQV-FAKYNVSRLQPYLKLRQALLELRPAKN----VLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 136 EGDGKAKEFGVMFI 149
                  +F + ++
Sbjct: 178 ----CKMDFKIFWL 187

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 20/123 (16%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV 107
           + L + DTAG        ER    R+     I  +   + + D       ++ +    E 
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAW--QEIEQADRVLFMVD-GTTTDAVDPAEIWPEF 108

Query: 108 RTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
                  + I +V NK D+  +  + + E +G A       I  SA+ G  +  L   + 
Sbjct: 109 IARLPAKLPITVVRNKADITGE-TLGMSEVNGHA------LIRLSARTGEGVDVLRNHLK 161

Query: 168 AAL 170
            ++
Sbjct: 162 QSM 164

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           + F S++       ++ V + D+ +          +         D  I+LVGNK DL+ 
Sbjct: 59  DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPG--LPRFA----ADNPILLVGNKADLLP 112

Query: 129 KRQVSIEEGD---GKAKEFGVMFIE---TSAKAGFNIKPLFRKI 166
           +     +        A+E G+  ++    SA  G  +  +   I
Sbjct: 113 RSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAI 156

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 19/168 (11%)

Query: 11  KLVFLGDQSVGKTSII-TRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-- 67
            ++ LG   VGK+S + +         +     G+  +  +  +   T+ +   DT G  
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI--IDTPGLV 95

Query: 68  -----QERFRSLIPSYIRDSSVAVIVY-DVANRQSF----LNTSRWIEEVRTERGGDVII 117
                  +   LI  ++ + ++ V++Y D  +  +           I +   +      +
Sbjct: 96  EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTL 155

Query: 118 VLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG---FNIKPL 162
           +++          ++S E    K  +  +  I   +K     F    +
Sbjct: 156 LVL-THAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAI 202

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
            + F  ++    +  ++ V + D+ +     N S  +  +     G+  ++LVGNK DL+
Sbjct: 56  DDDFLRILNGIGKSDALVVKIVDIFD----FNGSW-LPGLH-RFVGNNKVLLVGNKADLI 109

Query: 128 DKRQVSIEEGD---GKAKEFGVMFIE---TSAKAGFNIKPLFRKI 166
            K     +        AK+ G+   +    SA  G  I  L   I
Sbjct: 110 PKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAI 154

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 38.6 bits (91), Expect = 8e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAALP 171
           +++V NK D +   +  +   D   K+       +  SA  G N+  L + I   LP
Sbjct: 125 VIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.89
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.82
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.81
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.77
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.76
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.74
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.73
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.72
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.71
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.63
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.62
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.61
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.59
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.59
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.57
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.51
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.46
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.45
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.38
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.37
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.37
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.03
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.0
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.98
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.89
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.88
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.57
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.53
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.5
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.48
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.4
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.3
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.28
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.27
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.21
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.18
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.17
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.98
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.88
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.85
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.35
2xxa_A	433	Signal recognition particle protein; protein trans	97.34
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.32
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.29
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.27
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.26
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.24
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.23
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.22
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.2
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.17
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.15
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.13
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.12
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.12
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.09
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.06
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.04
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.02
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.02
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.0
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.99
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.99
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.98
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.98
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.98
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.97
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.97
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.95
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.95
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.94
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.94
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.93
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.92
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.92
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.91
1g6h_A	257	High-affinity branched-chain amino acid transport	96.91
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.91
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.9
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.89
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.89
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.89
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.89
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.88
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.88
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.86
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.86
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.85
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.85
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.84
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.83
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.83
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.82
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.82
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.82
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.82
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.81
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.81
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.81
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.81
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.8
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.8
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.8
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.79
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.78
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.78
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.78
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.78
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.77
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.77
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.77
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.76
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.74
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.73
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.71
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.71
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.7
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.69
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.69
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.69
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.68
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.65
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.63
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.63
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.63
3co5_A	143	Putative two-component system transcriptional RES	96.62
1via_A	175	Shikimate kinase; structural genomics, transferase	96.61
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.6
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.6
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.59
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.59
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.59
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.57
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.57
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.56
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.54
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.52
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.51
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.51
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.49
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.49
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.49
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.48
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.46
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.46
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.44
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.44
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.44
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.43
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.42
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.42
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.41
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.41
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.41
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.4
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.39
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.39
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.38
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.38
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.37
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.37
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.37
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.36
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.36
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.36
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.36
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.36
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.35
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.35
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.34
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.32
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.31
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.3
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.29
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.29
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.27
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.27
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.27
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.24
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.24
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.24
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.2
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.19
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.17
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.13
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.13
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.11
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.09
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.09
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.08
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.06
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.04
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.03
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.02
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.01
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.99
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.98
3bos_A	242	Putative DNA replication factor; P-loop containing	95.97
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.97
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.96
2og2_A	359	Putative signal recognition particle receptor; nuc	95.95
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.94
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.89
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.87
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.84
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.83
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.8
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.8
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.78
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.78
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.77
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.76
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.75
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.74
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.72
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.72
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.7
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.7
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.68
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.64
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.62
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.6
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.59
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.58
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.57
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.56
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.56
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.55
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.54
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.52
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.51
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.5
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.48
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.47
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.46
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.44
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.44
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.44
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.43
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.36
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.35
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.34
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.3
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.27
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.26
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.25
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.23
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.23
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.21
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.21
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.18
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.16
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.13
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.12
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.1
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.08
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.07
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.07
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.06
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.96
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	94.95
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.94
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.94
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.89
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.88
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.88
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.87
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	94.86
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.85
3uc9_A	233	Increased recombination centers protein 6; rossman	94.85
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.79
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	94.78
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.77
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.76
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.76
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.72
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.69
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	94.69
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.68
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.67

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.3e-45  Score=268.36  Aligned_cols=200  Identities=73%  Similarity=1.172  Sum_probs=147.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ++++++||+|+|.+|+|||||+++|+.+.|...+.++.+.++..+.+..++..+.+.||||+|+++|..++..|++++++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +++|||++++.+|+.+..|+..+......++|++||+||+|+.+.+.+..+++..++..+++.+++|||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999988888899999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHcCCCccCcccccccccccccCCCCCCccCCCCCCCccC
Q 028546          165 KIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQTEQQGGGCAC  207 (207)
Q Consensus       165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (207)
                      .|++.+...+............+....   +...+.+.++|||
T Consensus       169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~C~C  208 (216)
T 4dkx_A          169 RVAAALPGMESTQDRSREDMIDIKLEK---PQEQPVSEGGCSC  208 (216)
T ss_dssp             HHHHHC-------------------------------------
T ss_pred             HHHHHHHhhhcccccccccccccccCC---CCCCCCCCCCCce
Confidence            999999876655444433333332221   1224456677887

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.7e-38  Score=232.24  Aligned_cols=174  Identities=39%  Similarity=0.623  Sum_probs=156.8

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |+. +....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..++.
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            543 3455799999999999999999999999998888888888888888888998899999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      ++|++|+|||++++.+++.+..|+..+........|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999999999999988776689999999999998888888888888999999999999999999999


Q ss_pred             HHHHHHHHHcCCCcc
Q 028546          161 PLFRKIAAALPGMET  175 (207)
Q Consensus       161 ~~~~~l~~~~~~~~~  175 (207)
                      ++|++|.+.+.+...
T Consensus       160 ~l~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          160 DAFLTMARQIKESMS  174 (206)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998875543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.4e-36  Score=223.01  Aligned_cols=172  Identities=37%  Similarity=0.628  Sum_probs=148.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |++ +....++|+|+|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.
T Consensus         1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (207)
T 1vg8_A            1 MTS-RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR   79 (207)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred             CCc-ccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence            444 3456799999999999999999999999988888888888888888888888889999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCC
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKA  155 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~  155 (207)
                      ++|++|+|||++++.++..+..|+..+.....    .+.|+++|+||+|+. .+....+....++. ..+++++++||++
T Consensus        80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (207)
T 1vg8_A           80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE  158 (207)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred             CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence            99999999999999999999999998876543    468999999999996 55566777777777 5678999999999


Q ss_pred             CCChHHHHHHHHHHcCCCc
Q 028546          156 GFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~~~  174 (207)
                      |.|++++|++|.+.+.+..
T Consensus       159 g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          159 AINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TBSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999987543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-35  Score=219.65  Aligned_cols=171  Identities=34%  Similarity=0.634  Sum_probs=146.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45599999999999999999999999998777888888888888888988889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......++|++||+||+|+.+.+++..+++..++..++++++++||++|.|++++|++|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766679999999999998777888888888999999999999999999999999999


Q ss_pred             HHHcCCCccCc
Q 028546          167 AAALPGMETLS  177 (207)
Q Consensus       167 ~~~~~~~~~~~  177 (207)
                      .+.+.+.....
T Consensus       171 ~~~i~~~~~~~  181 (223)
T 3cpj_B          171 INTIYQKVSKH  181 (223)
T ss_dssp             HHHHTTCC---
T ss_pred             HHHHHHHhhhc
Confidence            99987665443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=4.5e-35  Score=214.75  Aligned_cols=168  Identities=33%  Similarity=0.570  Sum_probs=148.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +.++.++|+|+|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++++...+..++..+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            456679999999999999999999999988777666666444 4566778888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..+++..++..++++++++|+++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887653 578999999999998878888888999999999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 028546          164 RKIAAALPGM  173 (207)
Q Consensus       164 ~~l~~~~~~~  173 (207)
                      ++|.+.+.+.
T Consensus       169 ~~l~~~i~~~  178 (206)
T 2bov_A          169 FDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=3.8e-34  Score=205.67  Aligned_cols=169  Identities=42%  Similarity=0.757  Sum_probs=153.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....+||+++|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45569999999999999999999999998877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++...++..++++++++|+++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998877668999999999999888888888899999999999999999999999999999


Q ss_pred             HHHHcCCCc
Q 028546          166 IAAALPGME  174 (207)
Q Consensus       166 l~~~~~~~~  174 (207)
                      |.+.+...+
T Consensus       169 l~~~~~~~~  177 (181)
T 2efe_B          169 IARRLPRVQ  177 (181)
T ss_dssp             HHHTCC---
T ss_pred             HHHHHHhcC
Confidence            999887654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=1.5e-34  Score=207.90  Aligned_cols=174  Identities=32%  Similarity=0.441  Sum_probs=152.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +..+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+
T Consensus         2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            445689999999999999999999998888877778777666 6777888888999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999999998866543 478999999999998888899999999999999999999999999999999


Q ss_pred             HHHHHHcCCCccCccc
Q 028546          164 RKIAAALPGMETLSST  179 (207)
Q Consensus       164 ~~l~~~~~~~~~~~~~  179 (207)
                      ++|.+.+.........
T Consensus       161 ~~l~~~~~~~~~~~~~  176 (181)
T 3t5g_A          161 RRIILEAEKMDGACSQ  176 (181)
T ss_dssp             HHHHHHHHTC-----C
T ss_pred             HHHHHHHHHhcCCccc
Confidence            9999999877654443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=208.84  Aligned_cols=167  Identities=39%  Similarity=0.692  Sum_probs=156.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   94 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   94 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence            45899999999999999999999999988888999999999999999988999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+.......++..++++++++|+++|.|++++|++|.
T Consensus        95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888777899999999999988888888899999999999999999999999999999999


Q ss_pred             HHcCCCc
Q 028546          168 AALPGME  174 (207)
Q Consensus       168 ~~~~~~~  174 (207)
                      +.+.+..
T Consensus       175 ~~i~~~~  181 (196)
T 3tkl_A          175 AEIKKRM  181 (196)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9987543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=3.3e-34  Score=203.68  Aligned_cols=166  Identities=41%  Similarity=0.797  Sum_probs=152.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999999988777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+++.+..++...++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777788888888999999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1r2q_A          164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            988754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-34  Score=203.18  Aligned_cols=165  Identities=44%  Similarity=0.793  Sum_probs=151.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ++++|+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            57999999999999999999999999887778888888888888889888999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC---CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK---RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+.++   +++..+....++..++++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998877678999999999999765   66777888888888999999999999999999999


Q ss_pred             HHHHHcCC
Q 028546          165 KIAAALPG  172 (207)
Q Consensus       165 ~l~~~~~~  172 (207)
                      +|.+.+.+
T Consensus       162 ~l~~~i~~  169 (170)
T 1ek0_A          162 GIGEKIPL  169 (170)
T ss_dssp             HHHTTSCC
T ss_pred             HHHHHHhh
Confidence            99987753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=3.3e-34  Score=205.46  Aligned_cols=168  Identities=82%  Similarity=1.260  Sum_probs=153.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ++++++|+|+|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            35679999999999999999999999999888888888888888888999888999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++...+...++..++++++++|+++|.|++++|++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776667999999999999888888888888889999999999999999999999999


Q ss_pred             HHHHcCCC
Q 028546          166 IAAALPGM  173 (207)
Q Consensus       166 l~~~~~~~  173 (207)
                      |.+.+.+.
T Consensus       171 l~~~~~~~  178 (179)
T 2y8e_A          171 VAAALPGM  178 (179)
T ss_dssp             HHHTCC--
T ss_pred             HHHHHhhc
Confidence            99987653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=4.2e-34  Score=204.87  Aligned_cols=168  Identities=35%  Similarity=0.647  Sum_probs=153.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +....++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (179)
T 1z0f_A           11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   90 (179)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence            34557999999999999999999999999887777888888888888889888999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++..+++..++..++++++++|+++|.|++++|+
T Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987788888889999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028546          165 KIAAALPG  172 (207)
Q Consensus       165 ~l~~~~~~  172 (207)
                      +|.+.+.+
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=5.6e-34  Score=206.88  Aligned_cols=170  Identities=35%  Similarity=0.689  Sum_probs=151.1

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      .......+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            34456679999999999999999999999998877778888888888888898889999999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA  174 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998876678999999999999877788888889999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 028546          163 FRKIAAALPG  172 (207)
Q Consensus       163 ~~~l~~~~~~  172 (207)
                      |++|.+.+.+
T Consensus       175 ~~~l~~~i~~  184 (191)
T 2a5j_A          175 FINTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=3e-34  Score=204.14  Aligned_cols=166  Identities=39%  Similarity=0.685  Sum_probs=145.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            45799999999999999999999999988777888888888788888888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++..++...++..++++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999998877665679999999999998878888888999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1z08_A          164 CKRMIE  169 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.1e-34  Score=203.50  Aligned_cols=169  Identities=41%  Similarity=0.702  Sum_probs=144.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ....++|+++|++|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999998885 4567788888888888889988899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|+|+|++++.+++.+..|+..+......+.|+++|+||+|+.+++++..+....++..++++++++||++|.|++++|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887766899999999999988888888888889999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      +|.+.+.+..
T Consensus       167 ~l~~~~~~~~  176 (180)
T 2g6b_A          167 AIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHh
Confidence            9999887544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-34  Score=209.41  Aligned_cols=169  Identities=36%  Similarity=0.652  Sum_probs=154.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      .....+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||.+++...+..++.++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            34557999999999999999999999999887778888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++||++|.|++++|+
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999877666799999999999988888888888999999999999999999999999999


Q ss_pred             HHHHHcCCC
Q 028546          165 KIAAALPGM  173 (207)
Q Consensus       165 ~l~~~~~~~  173 (207)
                      +|.+.+.+.
T Consensus       164 ~l~~~i~~~  172 (203)
T 1zbd_A          164 RLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987643

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-34  Score=208.62  Aligned_cols=166  Identities=39%  Similarity=0.659  Sum_probs=153.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            44699999999999999999999999998888888888888888889998899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++..+++..++...+++++++||++|.|++++|++|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776779999999999998778888888888888899999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+.+
T Consensus       184 ~~~i~~  189 (201)
T 2ew1_A          184 ACRLIS  189 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.5e-34  Score=207.12  Aligned_cols=167  Identities=42%  Similarity=0.735  Sum_probs=125.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            45799999999999999999999999888777888888888888888988899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766679999999999998878888888899999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028546          167 AAALPGM  173 (207)
Q Consensus       167 ~~~~~~~  173 (207)
                      .+.+.+.
T Consensus       166 ~~~i~~~  172 (183)
T 2fu5_C          166 ARDIKAK  172 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.8e-34  Score=205.45  Aligned_cols=168  Identities=38%  Similarity=0.672  Sum_probs=152.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999999888888999888889999999889999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.++..+..|+..+..... +.|+++|+||+|+.+.+.+.......++...+++++++|+++|.|++++|++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999999999999887654 6999999999999888888888899999999999999999999999999999


Q ss_pred             HHHHcCCCc
Q 028546          166 IAAALPGME  174 (207)
Q Consensus       166 l~~~~~~~~  174 (207)
                      |.+.+.+..
T Consensus       165 l~~~~~~~~  173 (181)
T 3tw8_B          165 ITELVLRAK  173 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999886544

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=1.3e-33  Score=200.71  Aligned_cols=166  Identities=39%  Similarity=0.717  Sum_probs=153.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+..+.+.+||+||.+++...+..++.++|++|
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999988777888888888888888988899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+........|+++|+||+|+.+.+++..+....++..++++++++|+++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988767789999999999998878888888888999999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+.+
T Consensus       164 ~~~i~~  169 (170)
T 1z0j_A          164 SRRIPS  169 (170)
T ss_dssp             HHHCCC
T ss_pred             HHHHhc
Confidence            998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=7.7e-34  Score=205.77  Aligned_cols=167  Identities=38%  Similarity=0.712  Sum_probs=152.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++++...+..++.++|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34569999999999999999999999998877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++|+++|.|++++|++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998876667999999999999887888888889999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |.+.+.+
T Consensus       179 l~~~i~~  185 (189)
T 2gf9_A          179 LVDVICE  185 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=4.6e-34  Score=206.14  Aligned_cols=168  Identities=35%  Similarity=0.617  Sum_probs=154.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            35579999999999999999999999999888888888888888888899888999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.+++.+..|+..+......++|+++|+||+|+.+++.+...+...++...+++++++|+++|.|++++|++
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  166 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ  166 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877788888888899999999999999999999999999


Q ss_pred             HHHHcCCC
Q 028546          166 IAAALPGM  173 (207)
Q Consensus       166 l~~~~~~~  173 (207)
                      |.+.+.+.
T Consensus       167 l~~~~~~~  174 (186)
T 2bme_A          167 CARKILNK  174 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988643

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=210.63  Aligned_cols=168  Identities=42%  Similarity=0.718  Sum_probs=145.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +....+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|+
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            33456999999999999999999999999887777888878888888888888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~  163 (207)
                      +|+|||++++.+++.+..|+..+......++|++||+||+|+.+.+.+..+++..++..+++ +++++||++|.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766899999999999987778888889999999999 99999999999999999


Q ss_pred             HHHHHHcCC
Q 028546          164 RKIAAALPG  172 (207)
Q Consensus       164 ~~l~~~~~~  172 (207)
                      ++|.+.+.+
T Consensus       185 ~~l~~~i~~  193 (201)
T 2hup_A          185 LRVATELIM  193 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-33  Score=205.73  Aligned_cols=167  Identities=40%  Similarity=0.745  Sum_probs=152.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+|+|++|+|||||+++|++..+.....++.+.+.....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999999988777888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+.+.+++..++...++..++++++++|+++|.|++++|++|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988776679999999999998777888888999999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028546          167 AAALPGM  173 (207)
Q Consensus       167 ~~~~~~~  173 (207)
                      .+.+.+.
T Consensus       181 ~~~i~~~  187 (192)
T 2fg5_A          181 SRQIPPL  187 (192)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhh
Confidence            9988654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-33  Score=206.03  Aligned_cols=166  Identities=29%  Similarity=0.485  Sum_probs=142.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+++|++|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++++...+..++.++|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4569999999999999999999999988766666665333 345667888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+ ++...+....++..++++++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999888887766543  3689999999999864 55667788888888999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      +|.+.+.+..
T Consensus       164 ~l~~~~~~~~  173 (199)
T 2gf0_A          164 ELLTLETRRN  173 (199)
T ss_dssp             HHHHHCSSSC
T ss_pred             HHHHHHhhhh
Confidence            9999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=8.1e-34  Score=203.40  Aligned_cols=169  Identities=34%  Similarity=0.523  Sum_probs=149.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ..+.++|+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999988777777887788888888876 56899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      +|+|||++++.+++.+..|+..+.....   ...|+++|+||+|+.+.+.+..++...++..++++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999988876432   3344899999999987778888888889999999999999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028546          162 LFRKIAAALPGME  174 (207)
Q Consensus       162 ~~~~l~~~~~~~~  174 (207)
                      +|++|.+.+.+..
T Consensus       163 l~~~l~~~~~~~~  175 (178)
T 2hxs_A          163 CFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=6.1e-34  Score=206.57  Aligned_cols=173  Identities=38%  Similarity=0.614  Sum_probs=151.5

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeee-EEEEEECCe---------EEEEEEEecCChhh
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER   70 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~   70 (207)
                      |++.+....++|+|+|++|+|||||+++|.++.+...+.++.+.++. ...+..++.         .+.+.+||+||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            55555566799999999999999999999999888777788887776 566666655         68999999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFI  149 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (207)
                      +...+..+++++|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+.+..++..++++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999999887664 5799999999999987778888888989999999999


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ++|+++|.|++++|++|.+.+.+.
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=1.3e-33  Score=202.73  Aligned_cols=168  Identities=30%  Similarity=0.486  Sum_probs=149.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +.++.++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..++.++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4466799999999999999999999999888777777776654 667788888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+++..+....++...+++++++|+++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            99999999999999999999888444 34578999999999998878888888888988999999999999999999999


Q ss_pred             HHHHHHcCCC
Q 028546          164 RKIAAALPGM  173 (207)
Q Consensus       164 ~~l~~~~~~~  173 (207)
                      ++|.+.+.+.
T Consensus       164 ~~l~~~~~~~  173 (181)
T 2fn4_A          164 EQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988644

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=203.81  Aligned_cols=169  Identities=33%  Similarity=0.624  Sum_probs=153.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      .+....+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||.+++...+..++.++|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            34455699999999999999999999999988777888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      ++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus       100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF  179 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887766679999999999998877888888888998999999999999999999999


Q ss_pred             HHHHHHcCC
Q 028546          164 RKIAAALPG  172 (207)
Q Consensus       164 ~~l~~~~~~  172 (207)
                      ++|.+.+.+
T Consensus       180 ~~l~~~i~~  188 (193)
T 2oil_A          180 ETVLKEIFA  188 (193)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988753

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.8e-34  Score=210.41  Aligned_cols=173  Identities=32%  Similarity=0.509  Sum_probs=145.7

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (207)
                      +.|+..+.+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..++.+
T Consensus         2 s~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   80 (212)
T 2j0v_A            2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRG   80 (212)
T ss_dssp             CCCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTT
T ss_pred             CCCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccC
Confidence            356667889999999999999999999999988777777766444 4556678888899999999999999999999999


Q ss_pred             CCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--------CCHHHHHHHHHHhCC-eEEEE
Q 028546           82 SSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--------VSIEEGDGKAKEFGV-MFIET  151 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~  151 (207)
                      +|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+++.        +..++...++..+++ +++++
T Consensus        81 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (212)
T 2j0v_A           81 ADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC  159 (212)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence            99999999999999999986 79988877654 699999999999866543        367778888888886 99999


Q ss_pred             ecCCCCChHHHHHHHHHHcCCCccC
Q 028546          152 SAKAGFNIKPLFRKIAAALPGMETL  176 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~~~~~  176 (207)
                      ||++|.|++++|++|.+.+......
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          160 SSKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHCC---
T ss_pred             cCCCCCCHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999998765443

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=3e-33  Score=201.48  Aligned_cols=166  Identities=31%  Similarity=0.529  Sum_probs=150.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ...+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345679999999999999999999999988878777777666 6777888888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC-CCCChHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK-AGFNIKPL  162 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~  162 (207)
                      +|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..++++++++|++ +|.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            999999999999999999999886643 3578999999999998888899999999999999999999999 99999999


Q ss_pred             HHHHHHHcC
Q 028546          163 FRKIAAALP  171 (207)
Q Consensus       163 ~~~l~~~~~  171 (207)
                      |++|.+.+.
T Consensus       173 ~~~l~~~i~  181 (183)
T 3kkq_A          173 FHDLVRVIR  181 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998775

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.7e-33  Score=199.72  Aligned_cols=165  Identities=38%  Similarity=0.656  Sum_probs=150.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45799999999999999999999999988888888888888888888888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.+++++..++...++..++++++++|+++|.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999887765 468999999999998877888888888999999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+.+
T Consensus       162 ~~~~~~  167 (168)
T 1z2a_A          162 AEKHLQ  167 (168)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            987753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.2e-34  Score=207.30  Aligned_cols=167  Identities=36%  Similarity=0.646  Sum_probs=143.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            45679999999999999999999999998877788888888888888898888999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  181 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK  181 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998776678999999999999877788888888899999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |.+.+.+
T Consensus       182 l~~~i~~  188 (200)
T 2o52_A          182 CARTILN  188 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.8e-34  Score=205.85  Aligned_cols=167  Identities=35%  Similarity=0.666  Sum_probs=145.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      +....++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++++...+..++.++|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34556999999999999999999999999887778888888888888899888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~  163 (207)
                      +|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++..++...++..+ +++++++||++|.|++++|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999999988877778999999999999887888888888888875 7899999999999999999


Q ss_pred             HHHHHHcC
Q 028546          164 RKIAAALP  171 (207)
Q Consensus       164 ~~l~~~~~  171 (207)
                      ++|.+.+.
T Consensus       182 ~~l~~~i~  189 (192)
T 2il1_A          182 LKLVDDIL  189 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998774

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.3e-33  Score=200.65  Aligned_cols=165  Identities=38%  Similarity=0.745  Sum_probs=144.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999887778888888888888888888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |+|++++.+++.+..|+..+......+.|+++|+||+|+ ..+....+....++..++++++++|+++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998877668999999999999 5556777888888889999999999999999999999999


Q ss_pred             HHcCCC
Q 028546          168 AALPGM  173 (207)
Q Consensus       168 ~~~~~~  173 (207)
                      +.+.+.
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=208.85  Aligned_cols=173  Identities=32%  Similarity=0.473  Sum_probs=144.5

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      .++..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            45667789999999999999999999999999877777776655 55666667778999999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      |++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|+++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~  176 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG  176 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999998876533 4689999999999988888888999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCccC
Q 028546          162 LFRKIAAALPGMETL  176 (207)
Q Consensus       162 ~~~~l~~~~~~~~~~  176 (207)
                      +|++|.+.+.+....
T Consensus       177 l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          177 IFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999998765443

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2.4e-33  Score=203.17  Aligned_cols=168  Identities=37%  Similarity=0.618  Sum_probs=147.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-cccccccccCC
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSS   83 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d   83 (207)
                      ...+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++. ..+..+++++|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34567999999999999999999999999988888888888888888889988899999999999988 88899999999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC---CCh
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG---FNI  159 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~i  159 (207)
                      ++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+++..+....++..++++++++|++++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            9999999999999999999999988765 457999999999999888888888889999999999999999999   999


Q ss_pred             HHHHHHHHHHcCC
Q 028546          160 KPLFRKIAAALPG  172 (207)
Q Consensus       160 ~~~~~~l~~~~~~  172 (207)
                      +++|++|.+.+.+
T Consensus       176 ~~l~~~l~~~i~~  188 (189)
T 1z06_A          176 EAIFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHHHC-----
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=206.23  Aligned_cols=169  Identities=39%  Similarity=0.641  Sum_probs=139.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      .+..+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++++|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            44556799999999999999999999999987777788888888888888998899999999999999999999999999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC------CCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV------DKRQVSIEEGDGKAKEFGVMFIETSAKAGF  157 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (207)
                      ++|+|||++++.+++.+..|+..+......++|+++|+||+|+.      ..+.+..+....++..++++++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            99999999999999999999999887766679999999999986      346677788888898999999999999999


Q ss_pred             ChHHHHHHHHHHcCC
Q 028546          158 NIKPLFRKIAAALPG  172 (207)
Q Consensus       158 ~i~~~~~~l~~~~~~  172 (207)
                      |++++|++|.+.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=204.78  Aligned_cols=169  Identities=26%  Similarity=0.365  Sum_probs=145.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-ccccccccCCE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSV   84 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   84 (207)
                      ....+||+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+||++|++++.. ++..+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            35569999999999999999999986655444455666666777788899889999999999987765 67778899999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +|+|||++++.+|+.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf  179 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF  179 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence            9999999999999999999998877653 479999999999998888888888888999999999999999999999999


Q ss_pred             HHHHHHcCCCc
Q 028546          164 RKIAAALPGME  174 (207)
Q Consensus       164 ~~l~~~~~~~~  174 (207)
                      ++|.+.+.+.+
T Consensus       180 ~~l~~~i~~~~  190 (195)
T 3cbq_A          180 EGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhc
Confidence            99999886543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=4.3e-33  Score=197.42  Aligned_cols=165  Identities=33%  Similarity=0.580  Sum_probs=144.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++++...+..++.++|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            5689999999999999999999999988766666665444 445677888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+++++..++...++..++++++++|+++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999998877654 47999999999999888888888899999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-34  Score=209.89  Aligned_cols=167  Identities=36%  Similarity=0.674  Sum_probs=153.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|++|
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            45699999999999999999999999988887888888888888888887789999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+....++..++++++++|+++|.|++++|++|
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998888888999999999999999999999999999999999


Q ss_pred             HHHcCCC
Q 028546          167 AAALPGM  173 (207)
Q Consensus       167 ~~~~~~~  173 (207)
                      .+.+.+.
T Consensus       181 ~~~i~~~  187 (191)
T 3dz8_A          181 VDAICDK  187 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6e-33  Score=201.64  Aligned_cols=169  Identities=38%  Similarity=0.687  Sum_probs=151.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+|+|++|+|||||+++|++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45699999999999999999999999988888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.++..+..|+..+..... .++|+++|+||+|+ ..+++..++...++..++++++++|++++.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC-cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998876542 57899999999998 45567778888889999999999999999999999999


Q ss_pred             HHHHcCCCccC
Q 028546          166 IAAALPGMETL  176 (207)
Q Consensus       166 l~~~~~~~~~~  176 (207)
                      |.+.+.+....
T Consensus       172 l~~~~~~~~~~  182 (195)
T 1x3s_A          172 LVEKIIQTPGL  182 (195)
T ss_dssp             HHHHHHTSGGG
T ss_pred             HHHHHHhhhhh
Confidence            99998765443

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=3.3e-33  Score=201.99  Aligned_cols=166  Identities=31%  Similarity=0.534  Sum_probs=143.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999999988766666654 455566778888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ......+....++..++++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998877543 579999999999986 4566778888899999999999999999999999999


Q ss_pred             HHHHcCCCc
Q 028546          166 IAAALPGME  174 (207)
Q Consensus       166 l~~~~~~~~  174 (207)
                      |.+.+....
T Consensus       160 l~~~~~~~~  168 (189)
T 4dsu_A          160 LVREIRKHK  168 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987544

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=6.1e-33  Score=204.43  Aligned_cols=166  Identities=39%  Similarity=0.736  Sum_probs=150.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            44699999999999999999999999988788888888888888888998889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|||++++.+++.+..|+..+......++|+++|+||+|+ ..+....+....++..++++++++|+++|.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999998877667999999999999 556677788888888899999999999999999999999


Q ss_pred             HHHcCCC
Q 028546          167 AAALPGM  173 (207)
Q Consensus       167 ~~~~~~~  173 (207)
                      .+.+.+.
T Consensus       177 ~~~~~~~  183 (213)
T 3cph_A          177 AKLIQEK  183 (213)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5.8e-33  Score=196.78  Aligned_cols=164  Identities=30%  Similarity=0.543  Sum_probs=144.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ++++||+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++++...+..++.++|+++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            3579999999999999999999999988777777666544 355667777889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+++.+..++...++..+ +++++++||++|.|++++|+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            9999999999999999998887653 357999999999999888888888888888887 78999999999999999999


Q ss_pred             HHHHHcC
Q 028546          165 KIAAALP  171 (207)
Q Consensus       165 ~l~~~~~  171 (207)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998774

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.3e-32  Score=196.92  Aligned_cols=166  Identities=37%  Similarity=0.611  Sum_probs=145.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            45699999999999999999999999988888888888888888889998889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCChHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~  161 (207)
                      +|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .++...+++..++. ..+++++++|+++|.|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (177)
T 1wms_A           85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999998876653    578999999999986 56677778888877 5678999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028546          162 LFRKIAAALPGM  173 (207)
Q Consensus       162 ~~~~l~~~~~~~  173 (207)
                      +|++|.+.+.+.
T Consensus       164 l~~~l~~~~~~~  175 (177)
T 1wms_A          164 AFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=201.45  Aligned_cols=166  Identities=26%  Similarity=0.421  Sum_probs=141.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      .+..+.+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+... ..+++++|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            4456779999999999999999999999998877777777554 455677888899999999999988774 67889999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec-CCCCCh
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA-KAGFNI  159 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i  159 (207)
                      ++|+|||++++.+++.+..|+..+....   ..++|+++|+||+|+.+.+.+..+++..++..++++++++|| ++|.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            9999999999999999999999887653   247999999999999887888889999999999999999999 899999


Q ss_pred             HHHHHHHHHHcC
Q 028546          160 KPLFRKIAAALP  171 (207)
Q Consensus       160 ~~~~~~l~~~~~  171 (207)
                      +++|++|.+.+.
T Consensus       174 ~~lf~~l~~~i~  185 (187)
T 3c5c_A          174 QHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=5.8e-33  Score=197.34  Aligned_cols=164  Identities=27%  Similarity=0.386  Sum_probs=134.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-ccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~il   87 (207)
                      .+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++++.. .+..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999998877766666677778888888999999999999999998876 67778899999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||++++++++.+..|+..+..... .++|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999887654 479999999999998888899999999999999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.9e-32  Score=199.17  Aligned_cols=168  Identities=32%  Similarity=0.517  Sum_probs=147.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ..+.+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            345699999999999999999999999987777777765554 4667888888999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHHhCCe-EEEEecCCCCChHH
Q 028546           86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK--RQVSIEEGDGKAKEFGVM-FIETSAKAGFNIKP  161 (207)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~  161 (207)
                      |+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.++  +.+..++...++..+++. ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 77888777654 46999999999999754  667888899999999997 99999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 028546          162 LFRKIAAALPGMET  175 (207)
Q Consensus       162 ~~~~l~~~~~~~~~  175 (207)
                      +|++|.+.+.+.+.
T Consensus       178 l~~~l~~~i~~~~~  191 (194)
T 3reg_A          178 VFEKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999876543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=8e-34  Score=209.94  Aligned_cols=169  Identities=37%  Similarity=0.626  Sum_probs=149.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe----------EEEEEEEecCChhhhccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSL   74 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~   74 (207)
                      +....+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++.          .+.+.+||+||++++...
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~  100 (217)
T 2f7s_A           21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL  100 (217)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence            3455699999999999999999999999987777777777777777777665          689999999999999999


Q ss_pred             cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546           75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                      +..++.++|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+....++..++++++++|+
T Consensus       101 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  180 (217)
T 2f7s_A          101 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  180 (217)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEEC
Confidence            99999999999999999999999999999887765443 57999999999999887788888899999999999999999


Q ss_pred             CCCCChHHHHHHHHHHcCCC
Q 028546          154 KAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ++|.|++++|++|.+.+.+.
T Consensus       181 ~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          181 ATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=2.6e-32  Score=199.48  Aligned_cols=165  Identities=38%  Similarity=0.665  Sum_probs=146.7

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeE--------------------------
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRT--------------------------   57 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------   57 (207)
                      |+..+.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            455678999999999999999999999999887778888878777777776654                          


Q ss_pred             -----------EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           58 -----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        58 -----------~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                                 +.+.+||+||++.+...+..+++.+|++|+|+|++++.+++.+..|+..+.....  .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-
Confidence                       7999999999999999999999999999999999999999999999999887654  89999999999 


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ...++...+++..++..++++++++||++|.|++++|++|.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            566778888899999999999999999999999999999998775

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.6e-33  Score=200.73  Aligned_cols=169  Identities=30%  Similarity=0.485  Sum_probs=146.2

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |++++..+.++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            4455555679999999999999999999999988777677766544 455677777889999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-
Q 028546           81 DSSVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-  146 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-  146 (207)
                      ++|++|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.            +.+..++...++..+++ 
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  167 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  167 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence            999999999999999999987 78888877654 6899999999999754            46777888889998898 


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHcC
Q 028546          147 MFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      +++++||++|.|++++|++|.+.+.
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=6.7e-33  Score=204.80  Aligned_cols=170  Identities=26%  Similarity=0.466  Sum_probs=145.0

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      ...+..+||+|+|++|+|||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++...+..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3456779999999999999999999999999887778777665 455667777889999999999999999999999999


Q ss_pred             EEEEEEECCChHHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEE
Q 028546           84 VAVIVYDVANRQSFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFI  149 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  149 (207)
                      ++|+|||++++.+++. +..|+..+.... .++|+++|+||+|+.++            +.+..++...++..+++ +++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999 789999988765 47999999999999763            67888999999999999 999


Q ss_pred             EEecCCCCC-hHHHHHHHHHHcCCCcc
Q 028546          150 ETSAKAGFN-IKPLFRKIAAALPGMET  175 (207)
Q Consensus       150 ~~s~~~~~~-i~~~~~~l~~~~~~~~~  175 (207)
                      ++||++|.| ++++|++|.+.+.....
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999998875543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-33  Score=202.74  Aligned_cols=170  Identities=32%  Similarity=0.476  Sum_probs=145.1

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |.++...+.+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++.
T Consensus        20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~   97 (196)
T 2atv_A           20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMR   97 (196)
T ss_dssp             -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHH
T ss_pred             hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhc
Confidence            4566677889999999999999999999999998777777776544 45567788888999999999887 677888899


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-C
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-N  158 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~  158 (207)
                      .+|++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++..++...++..++++++++|+++|. |
T Consensus        98 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g  177 (196)
T 2atv_A           98 WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN  177 (196)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence            9999999999999999999999998887754 3579999999999998878888888999999999999999999999 9


Q ss_pred             hHHHHHHHHHHcCC
Q 028546          159 IKPLFRKIAAALPG  172 (207)
Q Consensus       159 i~~~~~~l~~~~~~  172 (207)
                      ++++|++|.+.+.+
T Consensus       178 i~~l~~~l~~~i~~  191 (196)
T 2atv_A          178 ITEIFYELCREVRR  191 (196)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.1e-32  Score=199.11  Aligned_cols=164  Identities=17%  Similarity=0.325  Sum_probs=141.6

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      ....++++||+++|++|+|||||+++|+++.+...+.++.  ......+.+++..+.+.+|||+|++.+.     +++++
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            3456778999999999999999999999999887666653  3344778889988999999999988776     78899


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHhC-CeEEEEecCCCCC
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKEFG-VMFIETSAKAGFN  158 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (207)
                      |++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.  ..+.+..+++..++..++ +.++++||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999987653 468999999999984  466788888999999987 8999999999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 028546          159 IKPLFRKIAAALPGM  173 (207)
Q Consensus       159 i~~~~~~l~~~~~~~  173 (207)
                      ++++|++|.+.+.+.
T Consensus       167 v~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          167 VERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=197.27  Aligned_cols=165  Identities=35%  Similarity=0.462  Sum_probs=134.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh--hccccccccccCCE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV   84 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   84 (207)
                      .+.+||+++|++|+|||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||++.  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            45799999999999999999999998876543 3455566677778888888999999999887  55666778899999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHH
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      +++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+++..++...++..++++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653 3468999999999998888888888888888899999999999999999999


Q ss_pred             HHHHHHcCC
Q 028546          164 RKIAAALPG  172 (207)
Q Consensus       164 ~~l~~~~~~  172 (207)
                      ++|.+.+..
T Consensus       161 ~~l~~~~~~  169 (175)
T 2nzj_A          161 EGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2.6e-32  Score=195.70  Aligned_cols=164  Identities=22%  Similarity=0.403  Sum_probs=138.2

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      ||..++++||+++|++|+|||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+||+||+++     ..+++++
T Consensus         1 Sm~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~   73 (178)
T 2iwr_A            1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWA   73 (178)
T ss_dssp             CCCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhC
Confidence            4667789999999999999999999999998876 55665533 356677888888999999999876     4577899


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHh-CCeEEEEecCCC
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKEF-GVMFIETSAKAG  156 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~  156 (207)
                      |++|+|||++++.+++.+..|+..+....   ..++|+++|+||+|+.  ..+.+..+++..++..+ +++++++||++|
T Consensus        74 d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (178)
T 2iwr_A           74 DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG  153 (178)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence            99999999999999999999876665443   2578999999999984  45677788888888876 689999999999


Q ss_pred             CChHHHHHHHHHHcCCC
Q 028546          157 FNIKPLFRKIAAALPGM  173 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~  173 (207)
                      .|++++|++|.+.+...
T Consensus       154 ~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          154 LNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999987643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=9.2e-33  Score=199.19  Aligned_cols=170  Identities=33%  Similarity=0.565  Sum_probs=146.9

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      +.+.++.+||+|+|++|+|||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++++...+..++..+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   90 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence            34456789999999999999999999999888776666665443 45567788888999999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      |++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+++..++...++..++++++++|++++.|+++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            999999999999999999999998877654 4789999999999988778888888999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 028546          162 LFRKIAAALPGM  173 (207)
Q Consensus       162 ~~~~l~~~~~~~  173 (207)
                      +|++|.+.+.+.
T Consensus       171 l~~~l~~~i~~~  182 (187)
T 2a9k_A          171 VFFDLMREIRAR  182 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988643

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.2e-32  Score=194.88  Aligned_cols=164  Identities=34%  Similarity=0.560  Sum_probs=145.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +++++|+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++.++|+++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            35799999999999999999999999887766666653 34666778888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++.......++..++++++++|+++|.|++++|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            99999999999999999988876543 57999999999999887888888888899999999999999999999999999


Q ss_pred             HHHHcC
Q 028546          166 IAAALP  171 (207)
Q Consensus       166 l~~~~~  171 (207)
                      |.+.+.
T Consensus       160 l~~~~~  165 (167)
T 1kao_A          160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=4.4e-32  Score=195.56  Aligned_cols=167  Identities=31%  Similarity=0.497  Sum_probs=144.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +++.++|+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccce-eEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            4678999999999999999999999998877666666543 345667888889999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEE
Q 028546           86 VIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIET  151 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  151 (207)
                      |+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.            +.+..++...++..+++ +++++
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  159 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  159 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999987 78888877654 6899999999998654            45677788888888887 99999


Q ss_pred             ecCCCCChHHHHHHHHHHcCCCc
Q 028546          152 SAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      ||++|.|++++|++|.+.+.+..
T Consensus       160 Sa~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          160 SALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCccCHHHHHHHHHHHHhccc
Confidence            99999999999999999987543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.8e-32  Score=202.76  Aligned_cols=173  Identities=29%  Similarity=0.467  Sum_probs=148.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-eEEEEEEEecCChhhhccccccccccCCEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ...+||+|+|.+|+|||||+++|+++.+...+.++.+.......+...+ ..+.+.+||+||++.+...+..++.++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            4569999999999999999999999988877777777666666655543 347899999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+++.......++...+++++++||++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998887777999999999999887788888888888888999999999999999999999


Q ss_pred             HHHHcCCCccCccc
Q 028546          166 IAAALPGMETLSST  179 (207)
Q Consensus       166 l~~~~~~~~~~~~~  179 (207)
                      |.+.+.+.......
T Consensus       169 l~~~~~~~~~~~~~  182 (218)
T 4djt_A          169 LARIFTGRPDLIFV  182 (218)
T ss_dssp             HHHHHHCCTTCCBC
T ss_pred             HHHHHhcccccccc
Confidence            99999877655543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=2.5e-32  Score=193.51  Aligned_cols=162  Identities=31%  Similarity=0.451  Sum_probs=122.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|++|+|||||+++|.+..+... .++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997766433 23333333 45667888889999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      ||++++.+++.+..|+..+.... ..++|+++|+||+|+.+++++..+....++..++++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999887653 35799999999999988888999999999999999999999999999999999999


Q ss_pred             HHcCC
Q 028546          168 AALPG  172 (207)
Q Consensus       168 ~~~~~  172 (207)
                      +.+.+
T Consensus       160 ~~~~~  164 (166)
T 3q72_A          160 RQIRL  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=6e-32  Score=195.83  Aligned_cols=171  Identities=30%  Similarity=0.507  Sum_probs=134.8

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (207)
                      ...+.+++++|+++|.+|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++++...+..++..
T Consensus        14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (190)
T 3con_A           14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   92 (190)
T ss_dssp             -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred             ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence            34566788999999999999999999999988876666655533 34566778888899999999999999999999999


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +|++++|||+++..++..+..|+..+..... .++|+++|+||+|+.+ +....++...++..++++++++|+++|.|++
T Consensus        93 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  171 (190)
T 3con_A           93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVE  171 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999999999988876543 4689999999999865 5667788888999999999999999999999


Q ss_pred             HHHHHHHHHcCCCc
Q 028546          161 PLFRKIAAALPGME  174 (207)
Q Consensus       161 ~~~~~l~~~~~~~~  174 (207)
                      ++|++|.+.+.+.+
T Consensus       172 ~l~~~l~~~~~~~~  185 (190)
T 3con_A          172 DAFYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999886543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.5e-32  Score=196.12  Aligned_cols=171  Identities=38%  Similarity=0.601  Sum_probs=132.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhcccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI   79 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~   79 (207)
                      |+. ...+.++|+++|++|+|||||+++|++..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..++
T Consensus         1 Ms~-~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~   79 (182)
T 1ky3_A            1 MSS-RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY   79 (182)
T ss_dssp             -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred             CCc-ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence            433 34567999999999999999999999999887778888877777777776 5567999999999999999999999


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCC-CCCCHHHHHHHHH-HhCCeEEEEec
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDK-RQVSIEEGDGKAK-EFGVMFIETSA  153 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~  153 (207)
                      +++|++|+|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+. +.+..++...++. ..+++++++|+
T Consensus        80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A           80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence            999999999999999999999999998877653    57899999999999543 4566777777777 45789999999


Q ss_pred             CCCCChHHHHHHHHHHcCC
Q 028546          154 KAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~  172 (207)
                      ++|.|++++|++|.+.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          160 KNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=210.74  Aligned_cols=166  Identities=39%  Similarity=0.701  Sum_probs=142.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV  111 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence            45999999999999999999999999988888888888888889999988999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+.......++..++++++++|+++|.|++++|++|.
T Consensus       112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999999877667899999999999987777776677888888999999999999999999999999


Q ss_pred             HHcCCC
Q 028546          168 AALPGM  173 (207)
Q Consensus       168 ~~~~~~  173 (207)
                      +.+.+.
T Consensus       192 ~~l~~~  197 (199)
T 3l0i_B          192 AEIKKR  197 (199)
T ss_dssp             TTTTTT
T ss_pred             HHHHHh
Confidence            887654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=5.1e-32  Score=197.94  Aligned_cols=167  Identities=32%  Similarity=0.469  Sum_probs=136.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      .....++|+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEE-EEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccce-eEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            34567999999999999999999999998876666666543 35567788888899999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEE
Q 028546           85 AVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIE  150 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~  150 (207)
                      +|+|||++++.+++.+. .|+..+..... ++|+++|+||+|+.++            +.+..++...++..+++ ++++
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            99999999999999986 79888877654 6999999999998753            55677888888888887 9999


Q ss_pred             EecCCCCChHHHHHHHHHHcCCC
Q 028546          151 TSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      +||++|.|++++|++|.+.+.+.
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999988644

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.7e-32  Score=192.09  Aligned_cols=165  Identities=28%  Similarity=0.468  Sum_probs=143.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ++++|+++|++|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            469999999999999999999999988766666655433 3455677888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |||++++.+++.+..|+..+.....  .+.|+++|+||+|+.+.+++.......++..++++++++|+++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888876542  46899999999999887888888888888889999999999999999999999


Q ss_pred             HHHHcCCC
Q 028546          166 IAAALPGM  173 (207)
Q Consensus       166 l~~~~~~~  173 (207)
                      |.+.+...
T Consensus       161 l~~~~~~~  168 (172)
T 2erx_A          161 LLNLEKRR  168 (172)
T ss_dssp             HHHTCCSS
T ss_pred             HHHHHhhh
Confidence            99987643

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=6.4e-33  Score=203.43  Aligned_cols=167  Identities=29%  Similarity=0.472  Sum_probs=111.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCccccccceeeeEEEEEECCe--EEEEEEEecCChhhhccccccccccC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      ...++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.+||+||++.+...+..++.++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            35689999999999999999999998  777676777777777778888876  78999999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHHHhCCeEEEEecCC-CC
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVD-KRQVSIEEGDGKAKEFGVMFIETSAKA-GF  157 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~  157 (207)
                      |++|+|||++++.+++.+..|+..+.....   .++|+++|+||+|+.+ .+.+..+++..++..++++++++|+++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   5799999999999987 778888889999999999999999999 99


Q ss_pred             ChHHHHHHHHHHcCCC
Q 028546          158 NIKPLFRKIAAALPGM  173 (207)
Q Consensus       158 ~i~~~~~~l~~~~~~~  173 (207)
                      |++++|++|.+.+.+.
T Consensus       178 gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          178 DADAPFLSIATTFYRN  193 (208)
T ss_dssp             --CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.3e-32  Score=198.85  Aligned_cols=166  Identities=32%  Similarity=0.455  Sum_probs=137.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hcccccccccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKF--DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRD   81 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~   81 (207)
                      +....+||+|+|.+|+|||||+++|.+...  ... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            445679999999999999999999996443  333 33455666677788899888999999999876 45566778889


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +|++|+|||+++..+|+.+..|+..+.... ..++|++||+||+|+.+.+++..++...++..++++++++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            999999999999999999999988876542 3469999999999998777888888888888899999999999999999


Q ss_pred             HHHHHHHHHcC
Q 028546          161 PLFRKIAAALP  171 (207)
Q Consensus       161 ~~~~~l~~~~~  171 (207)
                      ++|++|.+.+.
T Consensus       192 elf~~l~~~i~  202 (211)
T 2g3y_A          192 ELFEGIVRQVR  202 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=3.6e-31  Score=186.99  Aligned_cols=163  Identities=29%  Similarity=0.520  Sum_probs=142.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ++++|+++|++|+|||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||++++...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            56899999999999999999999988876666655533 35566778888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ +....+....++..++++++++|+++|.|+++++++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877654 4689999999999866 5566778888888999999999999999999999999


Q ss_pred             HHHcCC
Q 028546          167 AAALPG  172 (207)
Q Consensus       167 ~~~~~~  172 (207)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=1.2e-31  Score=193.46  Aligned_cols=164  Identities=27%  Similarity=0.494  Sum_probs=141.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777677766554 34566777788999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEE
Q 028546           86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIET  151 (207)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (207)
                      |+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.++            +.+..++...++..++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78888887654 36999999999999642            5577788888888887 699999


Q ss_pred             ecC-CCCChHHHHHHHHHHcC
Q 028546          152 SAK-AGFNIKPLFRKIAAALP  171 (207)
Q Consensus       152 s~~-~~~~i~~~~~~l~~~~~  171 (207)
                      ||+ ++.|++++|++|.+.+.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHHHh
Confidence            998 68999999999998865

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.5e-32  Score=197.51  Aligned_cols=167  Identities=34%  Similarity=0.535  Sum_probs=126.9

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      +|+..+.+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++++
T Consensus         2 s~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   80 (182)
T 3bwd_D            2 SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA   80 (182)
T ss_dssp             -----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTC
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCC
Confidence            466677899999999999999999999998887666665553332 2344566667889999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCC----------CCHHHHHHHHHHhCC-eEEE
Q 028546           83 SVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQ----------VSIEEGDGKAKEFGV-MFIE  150 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~  150 (207)
                      |++|+|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+.+.          +..++...++..+++ ++++
T Consensus        81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (182)
T 3bwd_D           81 DVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE  159 (182)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999987 68888877654 699999999999866544          467778888888897 9999


Q ss_pred             EecCCCCChHHHHHHHHHHcC
Q 028546          151 TSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      +||++|.|++++|++|.+.+.
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHS
T ss_pred             EECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998875

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-31  Score=195.95  Aligned_cols=164  Identities=27%  Similarity=0.494  Sum_probs=141.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            35679999999999999999999999998877777776554 44566777788999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEE
Q 028546           86 VIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIET  151 (207)
Q Consensus        86 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (207)
                      |+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.++            +.+..+++..++..++ ++++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 788888876543 6999999999999642            4577788888888887 699999


Q ss_pred             ecC-CCCChHHHHHHHHHHcC
Q 028546          152 SAK-AGFNIKPLFRKIAAALP  171 (207)
Q Consensus       152 s~~-~~~~i~~~~~~l~~~~~  171 (207)
                      ||+ ++.|++++|++|.+.+.
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHh
Confidence            999 68999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=7.2e-32  Score=200.09  Aligned_cols=172  Identities=29%  Similarity=0.538  Sum_probs=149.9

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   81 (207)
                      ........+||+++|.+|+|||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..++++
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            34455677999999999999999999988887777777888888888888889999999999999999999999999999


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      +|++|+|||++++.++..+..|+..+..... ++|+++|+||+|+.+.....  ....++...+++++++|+++|.|+++
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~  164 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEK  164 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999987654 68999999999986544322  44556777899999999999999999


Q ss_pred             HHHHHHHHcCCCccC
Q 028546          162 LFRKIAAALPGMETL  176 (207)
Q Consensus       162 ~~~~l~~~~~~~~~~  176 (207)
                      +|++|.+.+......
T Consensus       165 l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          165 PFLWLARKLIGDPNL  179 (221)
T ss_dssp             HHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHhCccc
Confidence            999999998766543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=5.3e-31  Score=192.73  Aligned_cols=163  Identities=32%  Similarity=0.522  Sum_probs=142.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ..++||+++|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            34699999999999999999999999988777777766554 34677888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q 028546           87 IVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETS  152 (207)
Q Consensus        87 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (207)
                      +|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.            +.+..++...++..+++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 678887776543 6899999999999765            45677788888888888 899999


Q ss_pred             cCCCCChHHHHHHHHHHcC
Q 028546          153 AKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~  171 (207)
                      |++|.|++++|++|.+.+.
T Consensus       181 A~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          181 AKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=197.34  Aligned_cols=166  Identities=31%  Similarity=0.524  Sum_probs=123.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+++||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            456999999999999999999999998876666666533 3556678888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEe
Q 028546           87 IVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETS  152 (207)
Q Consensus        87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  152 (207)
                      +|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+..            .+..++...++..+++ +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 7888887654 368999999999997653            5677788888888898 999999


Q ss_pred             cCCCCChHHHHHHHHHHcCCCc
Q 028546          153 AKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      |++|.|++++|++|.+.+.+.+
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999886443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=6.8e-31  Score=193.00  Aligned_cols=164  Identities=30%  Similarity=0.520  Sum_probs=137.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      +.++||+++|.+|+|||||+++|.++.+...+.++.+..+.. .+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            457899999999999999999999999877766766655443 3677888889999999999999999999999999999


Q ss_pred             EEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q 028546           87 IVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETS  152 (207)
Q Consensus        87 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (207)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..++...++..+++ +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67888777654 36899999999999754            45677778888888888 899999


Q ss_pred             cCCCCChHHHHHHHHHHcCC
Q 028546          153 AKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~~  172 (207)
                      |++|.|++++|++|.+.+..
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=4.6e-31  Score=193.54  Aligned_cols=163  Identities=32%  Similarity=0.518  Sum_probs=138.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ..+++||+++|.+|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+||+||++++...+..+++++|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999988766666664 45556677788888999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCC------------CCHHHHHHHHHHhCC-eEEEE
Q 028546           86 VIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKRQ------------VSIEEGDGKAKEFGV-MFIET  151 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~  151 (207)
                      |+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+...            +..++...++..+++ +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999986 7888887765 4699999999999876532            677788888888886 69999


Q ss_pred             ecCCCCChHHHHHHHHHHc
Q 028546          152 SAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~  170 (207)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998865

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=3.9e-30  Score=186.89  Aligned_cols=164  Identities=32%  Similarity=0.497  Sum_probs=135.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCccccccceeeeEEEEEECCeEEEEEEEecCChhh-hccccccccccCC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS   83 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   83 (207)
                      ...+||+++|.+|+|||||+++|.+..  +... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999643  3333 23455566677788899888999999999876 4556677888999


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHH
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      ++++|||+++..+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653 346899999999999877778777777788888999999999999999999


Q ss_pred             HHHHHHHcC
Q 028546          163 FRKIAAALP  171 (207)
Q Consensus       163 ~~~l~~~~~  171 (207)
                      |++|.+.+.
T Consensus       163 f~~l~~~~~  171 (192)
T 2cjw_A          163 FEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=4.4e-31  Score=192.47  Aligned_cols=166  Identities=18%  Similarity=0.265  Sum_probs=128.1

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccC
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   82 (207)
                      .+....++|+|+|.+|+|||||+++|.+..+.. .+.++.+...  ..+...+  +.+.+|||||++++...+..+++++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcC
Confidence            345667999999999999999999999999877 6666666433  3343333  7899999999999999999999999


Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcC--------CCCeEEEEEeCCCCCCCCCCCHHHHHHH------HHHhCCeE
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERG--------GDVIIVLVGNKTDLVDKRQVSIEEGDGK------AKEFGVMF  148 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~  148 (207)
                      |++|+|||++++.+|..+..|+..+.....        .++|+++|+||+|+.+...  ..+....      +...++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~  165 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVI  165 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEE
Confidence            999999999999999999999888765421        2689999999999976532  2222111      13356789


Q ss_pred             EEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546          149 IETSAKAGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      +++||++|.|++++|++|.+.+.+...
T Consensus       166 ~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          166 FASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998875543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=7.5e-32  Score=196.08  Aligned_cols=166  Identities=23%  Similarity=0.261  Sum_probs=133.1

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------ccccceeeeEEEE-EECCeEEEEEEEecCChhhh
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-----------QATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~   71 (207)
                      ......+||+|+|++|+|||||++.+.+ .+...+           .++.+.++....+ .+++..+.+.+|||||++++
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~   87 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY   87 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence            3445679999999999999999965554 444332           2344444444334 55677789999999999999


Q ss_pred             ccccccccccCCEEEEEEECC------ChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC
Q 028546           72 RSLIPSYIRDSSVAVIVYDVA------NRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG  145 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (207)
                      ...+..+++++|++|+|||++      +..++..+..|+..+. ....++|+++|+||+|+.+.  ...+++..++..++
T Consensus        88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~  164 (198)
T 3t1o_A           88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEG  164 (198)
T ss_dssp             SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTC
T ss_pred             HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcC
Confidence            999999999999999999999      5677778888887773 23357999999999998654  67788888888899


Q ss_pred             C-eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          146 V-MFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       146 ~-~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      + +++++||++|.|++++|++|.+.+.+.
T Consensus       165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          165 KFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             CSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            9 999999999999999999999987643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=8.1e-30  Score=186.13  Aligned_cols=165  Identities=35%  Similarity=0.698  Sum_probs=146.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            35999999999999999999999999887777888888888888899988899999999999999888899999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |+|+++..+++.+..|+..+........|+++++||+|+.+.+......++.++...++.++++|++++.+++++|++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999998898888766555789999999999987777788888889999999999999999999999999999


Q ss_pred             HHcCC
Q 028546          168 AALPG  172 (207)
Q Consensus       168 ~~~~~  172 (207)
                      +.+.+
T Consensus       164 ~~~~~  168 (199)
T 2f9l_A          164 TEIYR  168 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=183.66  Aligned_cols=162  Identities=19%  Similarity=0.272  Sum_probs=129.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-CCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ..+.++|+|+|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  +.+.+||+||++++...+..++.++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3567999999999999999999999887 4555555554  4445555665  689999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTERG---GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAG  156 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~  156 (207)
                      +|+|+|++++.+++.+..|+..+.....   .+.|+++|+||+|+.+.  ...++......     ..+++++++||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            9999999999999999999988876543   47899999999999653  33445544442     13568999999999


Q ss_pred             CChHHHHHHHHHHcCCC
Q 028546          157 FNIKPLFRKIAAALPGM  173 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~  173 (207)
                      .|++++|++|.+.+.+.
T Consensus       172 ~gi~~l~~~l~~~i~~~  188 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQTV  188 (190)
T ss_dssp             BTHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999999988654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=6.8e-29  Score=180.17  Aligned_cols=164  Identities=35%  Similarity=0.707  Sum_probs=148.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ...++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            44589999999999999999999999988888888888888889999998888999999999999888998999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      +|+|.++..+++.+..|+..+........|+++++||+|+.+.+......++.++...++.++++|++++.+++++|++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l  186 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI  186 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999998889888776555578999999999998777777888889999999999999999999999999999


Q ss_pred             HHHc
Q 028546          167 AAAL  170 (207)
Q Consensus       167 ~~~~  170 (207)
                      .+.+
T Consensus       187 ~~~i  190 (191)
T 1oix_A          187 LTEI  190 (191)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=6.1e-30  Score=181.93  Aligned_cols=159  Identities=22%  Similarity=0.329  Sum_probs=126.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||+++|.++.+.. +.++.+  .....+.+++  +.+.+||+||++++...+..+++++|++|
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            346999999999999999999999888753 344444  3344555564  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGK-----AKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+...  ..+....     +...+++++++|+++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999888888776543 24799999999999965532  2222222     11235689999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028546          161 PLFRKIAAALPG  172 (207)
Q Consensus       161 ~~~~~l~~~~~~  172 (207)
                      ++|++|.+.+.+
T Consensus       158 ~l~~~l~~~i~~  169 (171)
T 1upt_A          158 EAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-29  Score=182.95  Aligned_cols=164  Identities=19%  Similarity=0.264  Sum_probs=125.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||+++|.++.+. .+.++.+  .....+.+++  +.+.+||+||++++...+..+++++|++|
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988876 4444444  3334555565  78999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887642 246999999999999653  23344433322     235689999999999999


Q ss_pred             HHHHHHHHHcCCCccCc
Q 028546          161 PLFRKIAAALPGMETLS  177 (207)
Q Consensus       161 ~~~~~l~~~~~~~~~~~  177 (207)
                      ++|++|.+.+.......
T Consensus       167 ~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          167 QGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             HHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            99999999987665443

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=4.9e-29  Score=179.86  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=128.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||++++.++. ...+.++.+.  ....+.+++  +.+.+|||||++++...+..+++++|++|
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999999888 5555565553  344555554  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++..  .++......     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999999988876542 24699999999999965432  333322221     235689999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      ++|++|.+.+.+.
T Consensus       169 ~l~~~l~~~i~~~  181 (186)
T 1ksh_A          169 PGIDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.1e-30  Score=188.27  Aligned_cols=161  Identities=20%  Similarity=0.330  Sum_probs=122.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ...+.++|+|+|++|+|||||+++|.++.+.. +.++.+  .....+...+  +.+.+||+||++++...+..++.++|+
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQG   99 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            34678999999999999999999999888753 344444  3344455555  689999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFN  158 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~  158 (207)
                      +|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...  .++......     ..+++++++||++|.|
T Consensus       100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            999999999999999999988876532 24699999999999865422  222222111     1245799999999999


Q ss_pred             hHHHHHHHHHHcCC
Q 028546          159 IKPLFRKIAAALPG  172 (207)
Q Consensus       159 i~~~~~~l~~~~~~  172 (207)
                      ++++|++|.+.+.+
T Consensus       178 i~~l~~~l~~~i~~  191 (192)
T 2b6h_A          178 LYDGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=3.4e-30  Score=186.48  Aligned_cols=161  Identities=22%  Similarity=0.319  Sum_probs=128.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+|+|++|+|||||+++|.++.+...+.++.+.++.  .+...+  +.+.+||+||++++...+..++.++|++|
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            45699999999999999999999999887666676665543  333443  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (207)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+......     ..+++++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999999988876542 2579999999999996542  2222222211     124579999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      ++|++|.+.+.+.
T Consensus       174 ~l~~~l~~~~~~~  186 (188)
T 1zd9_A          174 ITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.5e-29  Score=184.65  Aligned_cols=157  Identities=21%  Similarity=0.256  Sum_probs=121.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||+++|.++.+.. +.++.+.  ....+.+++  +.+.+|||||++.++..+..+++++|++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP--TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC--SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCc--eeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            457899999999999999999999887743 3344333  235566676  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------hCCeE
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----------------FGVMF  148 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (207)
                      +|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+  .+..+++...+..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999998886542 34799999999999865  4556666655542                 23579


Q ss_pred             EEEecCCCCChHHHHHHHHHHc
Q 028546          149 IETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      ++|||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1.8e-30  Score=183.51  Aligned_cols=156  Identities=21%  Similarity=0.344  Sum_probs=122.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.++.+.. +.++.+  .....+...+  +.+.+||+||++++...+..++.++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 344444  3334444443  68999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      |++++++++.+..|+..+... ...+.|+++|+||+|+.+..  ...+......     ..+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            999999999999888887653 23468999999999996542  2222222111     124579999999999999999


Q ss_pred             HHHHHHcCC
Q 028546          164 RKIAAALPG  172 (207)
Q Consensus       164 ~~l~~~~~~  172 (207)
                      ++|.+.+..
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999998764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=2.9e-29  Score=182.00  Aligned_cols=156  Identities=22%  Similarity=0.245  Sum_probs=126.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|++|+|||||++++.++.+.. +.++.+.  ....+.+++  +.+.+||+||++++...+..+++++|++|
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            456899999999999999999999988753 3344443  345666776  78999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEec
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE------------FGVMFIETSA  153 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  153 (207)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+  ....++.......            .+++++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999998886542 25799999999999865  4455555544332            3457999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 028546          154 KAGFNIKPLFRKIAAA  169 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~  169 (207)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=2.1e-29  Score=181.24  Aligned_cols=158  Identities=19%  Similarity=0.305  Sum_probs=123.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ...+.++|+++|.+|+|||||+++|.++.+ ....++.+..  ...+.+++  +.+.+||+||++++...+..+++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS--CEEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            445679999999999999999999999887 3334444433  34455555  689999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFN  158 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~  158 (207)
                      +|+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.  ...+++.....     ..+++++++||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999999888876542 347999999999998653  23333333321     2345899999999999


Q ss_pred             hHHHHHHHHHH
Q 028546          159 IKPLFRKIAAA  169 (207)
Q Consensus       159 i~~~~~~l~~~  169 (207)
                      ++++|++|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=7.5e-29  Score=178.43  Aligned_cols=160  Identities=21%  Similarity=0.327  Sum_probs=124.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+++|++|+|||||+++|.+..+. .+.++.+.  ....+.+++  +.+.+||+||++.+...+..++.++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999999988653 23444443  334455554  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-----EFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (207)
                      +|||++++.+++.+..|+..+... ...+.|+++|+||+|+.+...  .++......     ..+++++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            999999999999998888877543 225789999999999965433  222222211     124579999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      ++|++|.+.+.+.
T Consensus       167 ~l~~~l~~~~~~~  179 (181)
T 1fzq_A          167 DGMNWVCKNVNAK  179 (181)
T ss_dssp             HHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987643

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=6.1e-30  Score=184.58  Aligned_cols=166  Identities=22%  Similarity=0.378  Sum_probs=122.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC--CCCCccccccceeeeEEEEEE---CCeEEEEEEEecCChhhhccccccccccCC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDTTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   83 (207)
                      ++||+++|++|+|||||+++|.+.  .+...+.++.+.++....+.+   ++..+.+.+||++|++++...+..++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  455555677777766655543   234578999999999999999999999999


Q ss_pred             EEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHHhCCe----EEEEecCC
Q 028546           84 VAVIVYDVANR-QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS---IEEGDGKAKEFGVM----FIETSAKA  155 (207)
Q Consensus        84 ~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~  155 (207)
                      ++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+.+.+.   ......++..++++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999987 579999999998876543 68999999999986543322   12233444455675    99999999


Q ss_pred             CC-ChHHHHHHHHHHcCCCcc
Q 028546          156 GF-NIKPLFRKIAAALPGMET  175 (207)
Q Consensus       156 ~~-~i~~~~~~l~~~~~~~~~  175 (207)
                      +. +++++++.|.+.+.....
T Consensus       161 ~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          161 ESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             CCHHHHHHHHHHHHHHHCC--
T ss_pred             CchhHHHHHHHHHHHHhcccc
Confidence            97 999999999998876543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=9.8e-30  Score=184.05  Aligned_cols=159  Identities=21%  Similarity=0.298  Sum_probs=126.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|++|+|||||+++|.++.+.. +.++.+  .....+..++  +.+.+|||||++++...+..+++++|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            568999999999999999999999887753 344444  3344455554  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+...  ..+.....     ...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999988888776543 25799999999999965432  22222211     1234579999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028546          161 PLFRKIAAALPG  172 (207)
Q Consensus       161 ~~~~~l~~~~~~  172 (207)
                      +++++|.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=4.5e-28  Score=189.71  Aligned_cols=162  Identities=31%  Similarity=0.511  Sum_probs=141.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..++|+++|.+|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999988766666665 3445667788888899999999999999999999999999999


Q ss_pred             EEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q 028546           88 VYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSA  153 (207)
Q Consensus        88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  153 (207)
                      |||++++.+++.+. .|+..+..... ++|+++|+||+|+.+.            +.+...+...++..+++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999986 78888876654 7999999999998653            56778888889999997 9999999


Q ss_pred             CCCCChHHHHHHHHHHcC
Q 028546          154 KAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~  171 (207)
                      ++|.|++++|++|.+.+.
T Consensus       312 ~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=5e-29  Score=181.53  Aligned_cols=163  Identities=19%  Similarity=0.242  Sum_probs=120.8

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE--EEC-CeEEEEEEEecCChhhhcccc---c
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM--YLE-DRTVRLQLWDTAGQERFRSLI---P   76 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~D~~G~~~~~~~~---~   76 (207)
                      +.+..+++||+++|.+|+|||||++++.+. +...  ++.+.+......  .+. +..+.+.+||+||+++|....   .
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   90 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE   90 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence            345567799999999999999999987764 3322  233333332222  232 455789999999999987776   7


Q ss_pred             cccccCCEEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHH----H
Q 028546           77 SYIRDSSVAVIVYDVANR--QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-------RQVSIEEGDGKAK----E  143 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~  143 (207)
                      .+++++|++|+|||++++  +++..+..|+..+.... .++|+++|+||+|+.++       +++.......++.    .
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            899999999999999987  67777777877775433 47999999999998652       3344455566666    5


Q ss_pred             hCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          144 FGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       144 ~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      +++.++++||++ .|++++|+.|++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            678999999999 99999999999865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=1.3e-28  Score=174.67  Aligned_cols=155  Identities=18%  Similarity=0.263  Sum_probs=118.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------ccccccc-
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR-   80 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-   80 (207)
                      ++++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+.++..      ....++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            568999999999999999999999877655556666666666666666  5899999999887642      2345554 


Q ss_pred             -cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           81 -DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        81 -~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                       ++|++++|+|+++.+   ....|+..+...   +.|+++|+||+|+.+.+.+.. +...++..++++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             899999999999754   344566666542   589999999999865444432 356677788999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028546          160 KPLFRKIAAALP  171 (207)
Q Consensus       160 ~~~~~~l~~~~~  171 (207)
                      +++|++|.+.+.
T Consensus       153 ~~l~~~l~~~~~  164 (165)
T 2wji_A          153 EELKKAISIAVK  164 (165)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.8e-31  Score=194.54  Aligned_cols=162  Identities=32%  Similarity=0.521  Sum_probs=134.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+++|.+|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||+||++++...+..++.++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            567999999999999999999999988876655555433 3445566777788999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEe
Q 028546           87 IVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR------------QVSIEEGDGKAKEFGV-MFIETS  152 (207)
Q Consensus        87 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  152 (207)
                      +|||++++.+++.+. .|+..+..... ++|+++|+||+|+.+..            .+..++...++..+++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999986 78877766544 68999999999997543            4445566677777787 899999


Q ss_pred             cCCCCChHHHHHHHHHHc
Q 028546          153 AKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~  170 (207)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=3.6e-28  Score=174.72  Aligned_cols=158  Identities=22%  Similarity=0.332  Sum_probs=122.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++++|+++|++|+|||||++++.++.+ ..+.++.+.  ....+.+++  +.+.+||+||++++...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998877 344455543  334455555  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  160 (207)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.++  ...++.......     .+++++++|+++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999888876543 357999999999998654  223333332221     23479999999999999


Q ss_pred             HHHHHHHHHcC
Q 028546          161 PLFRKIAAALP  171 (207)
Q Consensus       161 ~~~~~l~~~~~  171 (207)
                      +++++|.+.+.
T Consensus       169 ~l~~~l~~~~~  179 (183)
T 1moz_A          169 EGLDWLIDVIK  179 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=1e-27  Score=171.56  Aligned_cols=157  Identities=18%  Similarity=0.228  Sum_probs=121.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ..+.++|+++|++|+|||||+++|.+..+...+.++.+.+.....+.+++  ..+.+|||||++++...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            35679999999999999999999999988777667666666666677777  4678999999999999999999999999


Q ss_pred             EEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-------C--CeEEEEec
Q 028546           86 VIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-------G--VMFIETSA  153 (207)
Q Consensus        86 ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~  153 (207)
                      |+|+|+++   ..+++.+    ..+   ...++|+++|+||+|+.+.   ..+.........       +  ++++++||
T Consensus        83 i~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEAI----NHA---KAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             EEEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             EEEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            99999987   3333332    222   2236899999999998653   222222222222       2  58999999


Q ss_pred             CCCCChHHHHHHHHHHcCCCc
Q 028546          154 KAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      ++|.|++++|++|.+.+...+
T Consensus       153 ~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          153 KTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhhhhhc
Confidence            999999999999999876443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=2.3e-27  Score=176.71  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=118.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------cccccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPS   77 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~   77 (207)
                      ...++|+|+|.+|+|||||+++|++..+.....+..+.+.....+...+  ..+.+|||||....         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4579999999999999999999999887544344444455555555555  68999999998321         112234


Q ss_pred             ccccCCEEEEEEECCChHHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHhC--CeEEE
Q 028546           78 YIRDSSVAVIVYDVANRQSFL--NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE---EGDGKAKEFG--VMFIE  150 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  150 (207)
                      ++..+|++|+|||++++.++.  ....|+..+.... .+.|+++|+||+|+.+.+++...   ....++...+  +++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            567889999999999877664  2345555554432 36899999999999877766554   3455566666  79999


Q ss_pred             EecCCCCChHHHHHHHHHHcCCCc
Q 028546          151 TSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      +||++|.|++++|++|.+.+...+
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999886443

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=8.5e-29  Score=187.38  Aligned_cols=165  Identities=17%  Similarity=0.239  Sum_probs=123.0

Q ss_pred             CCCCceeEEEEcCC---------CCCHHHHHHHHhc---CCCCCcccccc-ceeeeEEEE--------------EECCeE
Q 028546            5 SPLAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDTTYQATI-GIDFLSKTM--------------YLEDRT   57 (207)
Q Consensus         5 ~~~~~~~i~v~G~~---------~sGKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~   57 (207)
                      .....+||+|+|.+         |+|||||+++|++   ..+...+.++. +.++....+              .+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            45667999999999         9999999999998   55655555544 333222211              245667


Q ss_pred             EEEEEEe-----------------------cCChhhhccccccccc---------------------cCCEEEEEEECCC
Q 028546           58 VRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVIVYDVAN   93 (207)
Q Consensus        58 ~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~ilv~d~~~   93 (207)
                      +.+.+||                       ++|++++...+..++.                     ++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8999999                       6667777777777776                     7999999999999


Q ss_pred             h--HHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           94 R--QSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        94 ~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      +  .+++.+..|+..+... ...++|+++|+||+|+.+.+.+  ++...++.. .+++++++||++|.|++++|++|.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            8  8999999999988765 3346999999999998655443  455666665 47899999999999999999999987


Q ss_pred             cC
Q 028546          170 LP  171 (207)
Q Consensus       170 ~~  171 (207)
                      +.
T Consensus       253 l~  254 (255)
T 3c5h_A          253 ID  254 (255)
T ss_dssp             HH
T ss_pred             hc
Confidence            63

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=4.5e-27  Score=173.27  Aligned_cols=161  Identities=20%  Similarity=0.300  Sum_probs=113.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe-EEEEEEEecCChhhhcc-ccccccccCCE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSSV   84 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   84 (207)
                      .+.++|+++|++|+|||||+++|+++.+...+.+ .+.+...  +.+++. .+.+.+|||||++++.. ++..+++++|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            4569999999999999999999999988766543 3333332  555543 47899999999999988 78888999999


Q ss_pred             EEEEEECCChH-HHHHHHHHHHH-HHHh--cCCCCeEEEEEeCCCCCCCCCCCH--HHHHHHHH----------------
Q 028546           85 AVIVYDVANRQ-SFLNTSRWIEE-VRTE--RGGDVIIVLVGNKTDLVDKRQVSI--EEGDGKAK----------------  142 (207)
Q Consensus        85 ~ilv~d~~~~~-s~~~~~~~~~~-i~~~--~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~----------------  142 (207)
                      +|+|||+++.. ++.....++.. +...  ...++|+++|+||+|+.+......  +.+.....                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999853 45555444443 3332  234689999999999975543211  11111111                


Q ss_pred             -----------------Hh--CCeEEEEecCCC------CChHHHHHHHHHHc
Q 028546          143 -----------------EF--GVMFIETSAKAG------FNIKPLFRKIAAAL  170 (207)
Q Consensus       143 -----------------~~--~~~~~~~s~~~~------~~i~~~~~~l~~~~  170 (207)
                                       .+  ++++++|||++|      .|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                             11  567999999999      99999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=3.3e-27  Score=183.09  Aligned_cols=163  Identities=22%  Similarity=0.324  Sum_probs=128.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh-----cccccccccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYIRD   81 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~   81 (207)
                      ..+||+++|++|+|||||+++|+++... ....+..+++.....+.+++ .+.+.+||+||++++     ...+..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            5799999999999999999999987433 22234444454555555544 479999999999988     6788888999


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCC--CCC----CCHHHHHHHHHHhC---CeEEE
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLVD--KRQ----VSIEEGDGKAKEFG---VMFIE  150 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~~~  150 (207)
                      +|++|+|||++++.+++.+..|...+....  ..++|+++|+||+|+.+  .+.    ...+++..++..++   +++++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~  160 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP  160 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999999999999999877765544322  34699999999999976  333    44567777888886   79999


Q ss_pred             EecCCCCChHHHHHHHHHHcCC
Q 028546          151 TSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      +|+++ .++.++|..+++.+..
T Consensus       161 tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          161 TSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             CCTTS-SHHHHHHHHHHHTTCS
T ss_pred             eeecC-ChHHHHHHHHHHHHcC
Confidence            99999 7999999998886643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.95  E-value=2.2e-27  Score=171.36  Aligned_cols=161  Identities=17%  Similarity=0.238  Sum_probs=127.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc------cccccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY   78 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~   78 (207)
                      +.++.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||+..+.      .....+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence            345789999999999999999999999876655566667777777777766  689999999988764      234555


Q ss_pred             cc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546           79 IR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus        79 ~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      +.  .+|++++|+|.++   ++....|+..+..   .+.|+++|+||+|+.+...+. .....++..++++++++|++++
T Consensus        81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~  153 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK  153 (188)
T ss_dssp             HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred             HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence            54  4999999999975   4556667776654   368999999999986554443 3456677788999999999999


Q ss_pred             CChHHHHHHHHHHcCCCc
Q 028546          157 FNIKPLFRKIAAALPGME  174 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~  174 (207)
                      .|++++|++|.+.+.+..
T Consensus       154 ~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          154 MGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             BSHHHHHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHhcc
Confidence            999999999999987654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=185.97  Aligned_cols=160  Identities=21%  Similarity=0.319  Sum_probs=120.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.++|+|+|.+|+|||||+++|.+..+... .++.+.  ....+...+  +.+.||||||++.+...+..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~--~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTE--EEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccce--EEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3568999999999999999999999887543 244433  334444454  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----FGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~  160 (207)
                      +|||++++.++..+..|+..+.... ..++|++||+||+|+.+...  .+.+......     .+++++++||++|.|++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            9999999999999888887765443 25799999999999965443  2222222211     24579999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      ++|++|.+.+.+.
T Consensus       316 el~~~l~~~l~~~  328 (329)
T 3o47_A          316 EGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=2.2e-27  Score=172.30  Aligned_cols=162  Identities=16%  Similarity=0.170  Sum_probs=111.0

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhhc
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~   72 (207)
                      .++....++|+|+|++|+|||||+++|++..+.....++.+..........++   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence            34555679999999999999999999999876544444444333333344444   689999999          77777


Q ss_pred             cccccccccC---CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--HHHHH-HHHHhCC
Q 028546           73 SLIPSYIRDS---SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--EEGDG-KAKEFGV  146 (207)
Q Consensus        73 ~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~  146 (207)
                      ..+..++..+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+..++..  +.... +....++
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            7788887777   9999999999866655532 2222222   3689999999999976554322  22222 2222357


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHcC
Q 028546          147 MFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      +++++|+++|.|++++|++|.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999998775

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=3.2e-26  Score=177.58  Aligned_cols=170  Identities=16%  Similarity=0.185  Sum_probs=132.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhc---------
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFR---------   72 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~---------   72 (207)
                      .++++.-.|+++|.+|+|||||+|+|++..+.. ...+.++.+......... +  .++.||||||..++.         
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence            455667899999999999999999999998753 334455555555555555 4  689999999985543         


Q ss_pred             -cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEE
Q 028546           73 -SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFI  149 (207)
Q Consensus        73 -~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  149 (207)
                       .....++..+|++++|+|++++.+......|+..+...   +.|+++|+||+|+.+..+........+...++  .+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~  159 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV  159 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence             45567788999999999999887777777667776653   68999999999997455555666666777765  6899


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGMETLSS  178 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~~~  178 (207)
                      ++||++|.|+++++++|.+.+.+.....+
T Consensus       160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~~  188 (308)
T 3iev_A          160 PISALKGANLDELVKTILKYLPEGEPLFP  188 (308)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred             EEeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence            99999999999999999999987655443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=1.5e-26  Score=175.17  Aligned_cols=156  Identities=20%  Similarity=0.229  Sum_probs=124.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc------cccc-
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------PSYI-   79 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~-   79 (207)
                      .+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+...+  ..+.+||+||...+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4579999999999999999999999887656667777766666666655  689999999988766532      4454 


Q ss_pred             -ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           80 -RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        80 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                       ..+|++|+|+|+++.++..   .|+..+...   ++|+++|+||+|+.+.+.+.. ....++..++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM---EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT---TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc---CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999865433   355555443   689999999999876555443 35677888899999999999999


Q ss_pred             hHHHHHHHHHHcC
Q 028546          159 IKPLFRKIAAALP  171 (207)
Q Consensus       159 i~~~~~~l~~~~~  171 (207)
                      ++++|++|.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999875

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=5.1e-27  Score=169.57  Aligned_cols=157  Identities=24%  Similarity=0.310  Sum_probs=116.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC-----------hhhhccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY   78 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   78 (207)
                      +||+++|++|+|||||+++|.+..+...+.++.+.....  +...    .+.+||+||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999998877666665544332  2233    689999999           66777777777


Q ss_pred             ccc-CCEEEEEEECCChHHHHHH-HHHHHH---------HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe
Q 028546           79 IRD-SSVAVIVYDVANRQSFLNT-SRWIEE---------VRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVM  147 (207)
Q Consensus        79 ~~~-~d~~ilv~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (207)
                      +++ ++++++++++.+..++..+ ..|...         +......++|+++|+||+|+.+..   .+....++..++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            776 6666666666655666665 455432         122222468999999999986654   45567777777764


Q ss_pred             -------EEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546          148 -------FIETSAKAGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       148 -------~~~~s~~~~~~i~~~~~~l~~~~~~~~~  175 (207)
                             ++++||++|.|++++|++|.+.+.+.++
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                   7999999999999999999998865443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=7.2e-27  Score=166.75  Aligned_cols=156  Identities=19%  Similarity=0.182  Sum_probs=116.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc--------cccc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   78 (207)
                      +.++|+++|++|+|||||+++|.+..+. ....++.+.+.....+.+++.  .+.+|||||+.++...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999999987653 233455566666777777773  5899999997643221        1235


Q ss_pred             cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                      ++++|++++|+|++++.+++ ...|+..+......++|+++|+||+|+.++...       ++...+.+++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCCC
Confidence            78999999999999877765 356777777665557999999999998543110       1112467899999999999


Q ss_pred             hHHHHHHHHHHcCCC
Q 028546          159 IKPLFRKIAAALPGM  173 (207)
Q Consensus       159 i~~~~~~l~~~~~~~  173 (207)
                      ++++|++|.+.+...
T Consensus       153 v~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          153 VDVLRNHLKQSMGFD  167 (172)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999999987543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=2e-26  Score=162.15  Aligned_cols=150  Identities=19%  Similarity=0.200  Sum_probs=106.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh-------hcccccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   81 (207)
                      .||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++.  .+.+||+||...       +...+..++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999988754 233455555666666667764  789999999876       34455667899


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCChH
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFNIK  160 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  160 (207)
                      +|++|+|+|++++.+...  .++..+...  .+.|+++|+||+|+.+..+    ....++ .+++ +++++|+++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~----~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL----YLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG----GCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH----hHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999997433222  222222222  2589999999999965532    223333 5677 89999999999999


Q ss_pred             HHHHHHHHHc
Q 028546          161 PLFRKIAAAL  170 (207)
Q Consensus       161 ~~~~~l~~~~  170 (207)
                      ++|++|.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999999876

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=7.4e-27  Score=193.71  Aligned_cols=167  Identities=21%  Similarity=0.354  Sum_probs=127.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEE------EEE--CCeEEEEEEEecCChhhhccccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKT------MYL--EDRTVRLQLWDTAGQERFRSLIP   76 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~G~~~~~~~~~   76 (207)
                      ....++||+++|.+|+|||||+++|.+..+...+.++.+.++....      +.+  ++..+.+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4577899999999999999999999999987777777776665442      111  23346899999999999999999


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAG  156 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (207)
                      .+++++|++|+|+|+++.   +.+..|+..+..... +.|+++|+||+|+.+.+++..+.....+...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999999864   556778888877654 6899999999999888888888888888888999999999999


Q ss_pred             CChHHHHHHHHHHcCCCcc
Q 028546          157 FNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~~  175 (207)
                      .|+++++++|.+.+.....
T Consensus       193 ~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             --CTTHHHHHHHHHTCTTS
T ss_pred             cCHHHHHHHHHHHHhcccc
Confidence            9999999999999886544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=9.7e-26  Score=163.41  Aligned_cols=161  Identities=20%  Similarity=0.324  Sum_probs=113.9

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhh
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERF   71 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~   71 (207)
                      ...+....++|+++|++|+|||||+++|++..+... .++.+..........+.   .+.+|||||          ++.+
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~   91 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLW   91 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHH
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHH
Confidence            455566779999999999999999999998874322 23333333233333333   578999999          6667


Q ss_pred             ccccccccccC---CEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHh
Q 028546           72 RSLIPSYIRDS---SVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEEGDGKAKEF  144 (207)
Q Consensus        72 ~~~~~~~~~~~---d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~  144 (207)
                      ...+..++..+   |++++|+|+++..+  ...+..|+...      +.|+++|+||+|+.++.+  ...+.....+...
T Consensus        92 ~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~  165 (195)
T 3pqc_A           92 KRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY  165 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhc
Confidence            77777777766   99999999986432  23333444332      589999999999875433  2233444444443


Q ss_pred             C-CeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          145 G-VMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       145 ~-~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      + ++++++||++|.|++++|++|.+.+.+
T Consensus       166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          166 GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            3 689999999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=9.4e-27  Score=177.82  Aligned_cols=158  Identities=18%  Similarity=0.221  Sum_probs=122.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc----------cc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IP   76 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~   76 (207)
                      |++++|+++|.+|+|||||+|+|++..+.....++.+.+.....+...+  ..+.+|||||...+...          ..
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence            3579999999999999999999999887666677777777777777766  47889999998776631          22


Q ss_pred             cc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546           77 SY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK  154 (207)
Q Consensus        77 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (207)
                      .+  ...+|++|+|+|+++.+....+..++.   ..   ++|+++|+||+|+.+...... ....+...++++++++||+
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence            22  268999999999998655544444333   33   589999999999865444322 2456677789999999999


Q ss_pred             CCCChHHHHHHHHHHcCCC
Q 028546          155 AGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~~~~  173 (207)
                      +|.|+++++++|.+.+...
T Consensus       152 ~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          152 RGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             GGHHHHHHHHHHHTCCCCC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999887644

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=2.6e-26  Score=173.58  Aligned_cols=151  Identities=15%  Similarity=0.217  Sum_probs=120.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc----------cccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI   79 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   79 (207)
                      .+|+++|.+|+|||||+|+|.+........++.+.+.....+..++.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999999876667788888888888888774  899999999877653          344556


Q ss_pred             --ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546           80 --RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF  157 (207)
Q Consensus        80 --~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (207)
                        .++|++|+|+|+++.++...+..++..      .+.|+++|+||+|+.+.+.... ....+...++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~------~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLFE------LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHTT------SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHHH------cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence              889999999999986655544433322      2689999999999865544332 2345677789999999999999


Q ss_pred             ChHHHHHHHHHH
Q 028546          158 NIKPLFRKIAAA  169 (207)
Q Consensus       158 ~i~~~~~~l~~~  169 (207)
                      |+++++++|.+.
T Consensus       153 gi~el~~~i~~~  164 (256)
T 3iby_A          153 GIPALQQSLLHC  164 (256)
T ss_dssp             SHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999999887

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=1.1e-25  Score=171.65  Aligned_cols=160  Identities=23%  Similarity=0.249  Sum_probs=125.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------cccccc-
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI-   79 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~-   79 (207)
                      ++.++|+++|++|+|||||+++|.+..+.....++.+.+.....+...+.  .+.+||+||...+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            35689999999999999999999999886667778888887777777774  699999999887665      344454 


Q ss_pred             -ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q 028546           80 -RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        80 -~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (207)
                       .++|++|+|+|+++..   ....|...+....  ..|+++|+||+|+.+....... ...+...++++++++|+++|.|
T Consensus        79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g  152 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG  152 (271)
T ss_dssp             TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred             ccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence             6899999999999753   3333444444331  2899999999998654444332 5667778899999999999999


Q ss_pred             hHHHHHHHHHHcCCCc
Q 028546          159 IKPLFRKIAAALPGME  174 (207)
Q Consensus       159 i~~~~~~l~~~~~~~~  174 (207)
                      ++++++++.+.+....
T Consensus       153 i~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          153 VEELKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999876443

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=2e-26  Score=177.81  Aligned_cols=156  Identities=18%  Similarity=0.183  Sum_probs=116.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC---ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---ccccccccCCE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDT---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV   84 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   84 (207)
                      ||+++|+.|+|||||++++.++.++.   ...++.+.+...  +  + ..+++.+|||+|+++|+.   .+..|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664432   134555554432  2  2 237899999999999975   35889999999


Q ss_pred             EEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEE
Q 028546           85 AVIVYDVANR--QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-------RQVSIEEGDGKAKE----FGVMFIET  151 (207)
Q Consensus        85 ~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  151 (207)
                      +|+|||+++.  +.+..+..|+..+... .+++|+++++||+|+.++       +++..++.+.+++.    +++.++++
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  3334444445555443 347999999999999754       23445555566664    57899999


Q ss_pred             ecCCCCChHHHHHHHHHHcCCC
Q 028546          152 SAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ||++ .++.++|..+++.+...
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ccCC-CcHHHHHHHHHHHHHhh
Confidence            9998 58999999999877644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=4.2e-26  Score=173.67  Aligned_cols=154  Identities=16%  Similarity=0.184  Sum_probs=117.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc------cccccccc--
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR--   80 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~--   80 (207)
                      .++|+++|++|+|||||+++|.+........++.+.+.....  +.. ...+.+||+||+..+.      .....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            589999999999999999999988755454555554443333  343 4689999999988765      33455554  


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      ++|++|+|+|+++.++.   ..|...+...   ++|+++++||+|+.+.+.+. .....++..++++++++||++|.|++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIET---GIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHhc---CCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence            69999999999975543   3455555442   68999999999986554443 34566777889999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 028546          161 PLFRKIAAALPG  172 (207)
Q Consensus       161 ~~~~~l~~~~~~  172 (207)
                      ++|++|.+.+..
T Consensus       153 el~~~i~~~~~~  164 (272)
T 3b1v_A          153 QVVKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHHHSCTT
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=9.6e-26  Score=167.09  Aligned_cols=167  Identities=14%  Similarity=0.105  Sum_probs=111.6

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhh
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYDKF--DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QER   70 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~   70 (207)
                      +.+....++|+|+|.+|+|||||+++|++...  .....+..+.+........ .....+.+|||||          ++.
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHH
Confidence            44556679999999999999999999999873  2223333333333222221 2235799999999          344


Q ss_pred             hcccccccccc---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH--
Q 028546           71 FRSLIPSYIRD---SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKE--  143 (207)
Q Consensus        71 ~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~--  143 (207)
                      +...+..++..   +|++|+|+|++++.+ .....++..+..   ..+|+++|+||+|+.+..+..  .+........  
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLT-ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCC-HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            55566666665   788999999986433 122334444433   368999999999987544321  1222222232  


Q ss_pred             -----hCCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546          144 -----FGVMFIETSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       144 -----~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                           .+.+++++||++|.|++++|++|.+.+....
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence                 4568999999999999999999999987543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=9.2e-25  Score=168.64  Aligned_cols=166  Identities=18%  Similarity=0.165  Sum_probs=115.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhh--------h
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F   71 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~   71 (207)
                      |+..  .+..+|+++|.+|+|||||+|+|++..+.. ...+.++.+.........+  .++.||||||..+        +
T Consensus         1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~   76 (301)
T 1wf3_A            1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFM   76 (301)
T ss_dssp             --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHH
T ss_pred             CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHH
Confidence            4443  556889999999999999999999988753 3334444443333444444  6899999999776        3


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeE
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWI-EEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMF  148 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~  148 (207)
                      ......+++.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+.+....    .......+  ..++
T Consensus        77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~  149 (301)
T 1wf3_A           77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEP  149 (301)
T ss_dssp             HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEE
T ss_pred             HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcE
Confidence            445566789999999999998754333  3444 3343322 36899999999998654320    22223332  3479


Q ss_pred             EEEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546          149 IETSAKAGFNIKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~~~~~~~~~  177 (207)
                      +++||++|.|+++++++|.+.+.+....+
T Consensus       150 ~~iSA~~g~gv~~l~~~l~~~l~~~~~~y  178 (301)
T 1wf3_A          150 RMLSALDERQVAELKADLLALMPEGPFFY  178 (301)
T ss_dssp             EECCTTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred             EEEeCCCCCCHHHHHHHHHHhcccCCCCC
Confidence            99999999999999999999886554433

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=9.4e-26  Score=166.64  Aligned_cols=149  Identities=18%  Similarity=0.239  Sum_probs=106.2

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---cccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~   77 (207)
                      |........++|+++|++|+|||||+++|.+..+...   +.++.+.++         ....+.+||+||++.+...+..
T Consensus         4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~   74 (218)
T 1nrj_B            4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD   74 (218)
T ss_dssp             ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred             CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence            3344455679999999999999999999999887542   233332221         3357999999999999888888


Q ss_pred             cccc----CCEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHH
Q 028546           78 YIRD----SSVAVIVYDVA-NRQSFLNTSRWIEEVRTE----RGGDVIIVLVGNKTDLVDKRQVS------IEEGDGKAK  142 (207)
Q Consensus        78 ~~~~----~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~  142 (207)
                      ++..    +|++|+|+|++ ++.++..+..|+..+...    ...++|+++|+||+|+.+...+.      ..+...++.
T Consensus        75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~  154 (218)
T 1nrj_B           75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE  154 (218)
T ss_dssp             HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence            8877    89999999999 888888888888877654    34579999999999997765543      344555666


Q ss_pred             HhCCeEEEEecCCCCC
Q 028546          143 EFGVMFIETSAKAGFN  158 (207)
Q Consensus       143 ~~~~~~~~~s~~~~~~  158 (207)
                      ..++.++++|+++|.+
T Consensus       155 ~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          155 RRKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHC--------
T ss_pred             HHhccccccccccccc
Confidence            6677899999999875

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=3.6e-25  Score=177.48  Aligned_cols=164  Identities=20%  Similarity=0.211  Sum_probs=119.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-----
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----   74 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----   74 (207)
                      |+..+....++|+|+|+.++|||||+++|++..+. ....++.+++.....+...+.. .+.+|||||+.++...     
T Consensus        26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~  104 (423)
T 3qq5_A           26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRV  104 (423)
T ss_dssp             CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCH
T ss_pred             cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHH
Confidence            34445566799999999999999999999998873 4445666677777777777653 8999999999877654     


Q ss_pred             --cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546           75 --IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus        75 --~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        ...++.++|++|+|+|++...   ....|+..+...   ++|+++|+||+|+.++...  +....+...++++++++|
T Consensus       105 ~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS  176 (423)
T 3qq5_A          105 EKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS  176 (423)
T ss_dssp             HHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred             HHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence              244788999999999994332   234566666554   6899999999999766554  455556667789999999


Q ss_pred             cCCCCChHHHHHHHHHHcCCC
Q 028546          153 AKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      +++|.|++++|++|.+.+.+.
T Consensus       177 Aktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          177 ALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             SCCTTSTTTHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999999655

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.1e-24  Score=176.44  Aligned_cols=165  Identities=21%  Similarity=0.200  Sum_probs=118.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh----------hhhcccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI   75 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~   75 (207)
                      ...++|+++|.+|+|||||+|+|++.... ....++++.+.....+..++.  .+.+|||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35699999999999999999999988764 444566666766667777774  6899999997          3333333


Q ss_pred             c-cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-HH----hCCeEE
Q 028546           76 P-SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-KE----FGVMFI  149 (207)
Q Consensus        76 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~  149 (207)
                      . .++..+|++|+|+|++++.+++.. .|+..+...   ++|+++|+||+|+.+......++..... ..    .+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            2 467899999999999987777665 466655542   6899999999999876655444333222 22    257999


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~~  177 (207)
                      ++||++|.|++++|+.+.+.+.....+.
T Consensus       327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~  354 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIKASENHSLRV  354 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             EEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999887554433

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=4e-24  Score=174.06  Aligned_cols=156  Identities=16%  Similarity=0.157  Sum_probs=99.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc--------cccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI   79 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   79 (207)
                      .++|+++|.+|+|||||+|+|++... .....++++.+.....+.+++  +.+.+|||||..++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            47899999999999999999998854 345566777777777777877  579999999987765443        3467


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      ..+|++|+|+|++++.+++.+..+...+... . ++|+++|+||+|+.+.....   ...+......+++++|+++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~-~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH-P-AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T-TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C-CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCH
Confidence            8999999999999877765433333322222 2 58999999999997654432   12233332478999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028546          160 KPLFRKIAAALP  171 (207)
Q Consensus       160 ~~~~~~l~~~~~  171 (207)
                      ++++++|.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=3.3e-23  Score=163.80  Aligned_cols=162  Identities=21%  Similarity=0.199  Sum_probs=122.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc---------cccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS   77 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   77 (207)
                      ...++|+++|.+|+|||||+++|.+..+.....+..+.+.....+...+  ..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            3568999999999999999999998875433344444454444444444  5799999999754211         1223


Q ss_pred             ccccCCEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q 028546           78 YIRDSSVAVIVYDVANRQ--SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA  155 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (207)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.+..++  +....++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            445799999999998866  67778888888877654 6899999999998655432  345556667788999999999


Q ss_pred             CCChHHHHHHHHHHcCCC
Q 028546          156 GFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~~  173 (207)
                      |.|+++++++|.+.+...
T Consensus       320 g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          320 GTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=4.1e-24  Score=174.03  Aligned_cols=165  Identities=21%  Similarity=0.221  Sum_probs=122.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCC----------hhhhcccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI   75 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   75 (207)
                      ...++|+++|.+++|||||+++|++... .....++++.+.....+..++.  .+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4569999999999999999999997753 3344566666666666777774  799999999          56665554


Q ss_pred             c-cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEE
Q 028546           76 P-SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFI  149 (207)
Q Consensus        76 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (207)
                      . .+++.+|++|+|+|++++.+ +....|+..+..   .+.|+++|+||+|+.+.++...++....+...     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 37789999999999997433 222344444443   25899999999999877777667766666654     57999


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCCccCc
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~~  177 (207)
                      ++||++|.|++++|+++.+.+.......
T Consensus       347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~  374 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIKASENHSLRV  374 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             EEcCCCCcCHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999999886655444

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=9.1e-24  Score=165.35  Aligned_cols=160  Identities=16%  Similarity=0.132  Sum_probs=121.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----hcccccccc---ccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYI---RDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~d   83 (207)
                      +|+|+|.+++|||||+++|.+..+.....+.++.......+.+++. ..+.+||+||...    +..+...++   ..+|
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            6889999999999999999987654333444455555555656542 3799999999643    223334444   4599


Q ss_pred             EEEEEEECCC---hHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCC
Q 028546           84 VAVIVYDVAN---RQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAG  156 (207)
Q Consensus        84 ~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  156 (207)
                      ++|+|+|+++   ..+++.+..|+..+.....  ..+|+++|+||+|+.+..    +....+...+.  .+++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   7888888889988877542  478999999999986432    33455556665  68999999999


Q ss_pred             CChHHHHHHHHHHcCCCcc
Q 028546          157 FNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~~  175 (207)
                      .|+++++++|.+.+.+...
T Consensus       315 ~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             STTHHHHHHHHHHHTSCCC
T ss_pred             cCHHHHHHHHHHHHhhCcc
Confidence            9999999999999976544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=5.8e-23  Score=166.52  Aligned_cols=151  Identities=19%  Similarity=0.263  Sum_probs=104.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhh---------hcccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI   79 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   79 (207)
                      .+|+++|.+++|||||+|+|++.... ....++.+.+.....+.+.+.  .+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999988753 345667777777777778774  689999999654         334566788


Q ss_pred             ccCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH-HHHHHHhCC-eEEEEecCC
Q 028546           80 RDSSVAVIVYDVANRQSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG-DGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~  155 (207)
                      +++|++|+|+|++++.+...  +..|+..   .   ++|+++|+||+|+.+..   .... ..+. .+++ +++++||.+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~---~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK---S---TVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH---H---TCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH---c---CCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999986543322  3333322   2   58999999999974320   1112 2222 4566 789999999


Q ss_pred             CCChHHHHHHHHHHcCC
Q 028546          156 GFNIKPLFRKIAAALPG  172 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~~  172 (207)
                      |.|+.+++++|.+.+.+
T Consensus       150 g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          150 NINLDTMLETIIKKLEE  166 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhccc
Confidence            99999999999998864

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=6.7e-23  Score=167.57  Aligned_cols=157  Identities=21%  Similarity=0.210  Sum_probs=112.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-------FDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY   78 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   78 (207)
                      .++.++|+++|+.++|||||+++|.+..       +..+..++.+++.....+.+++  ..+.+|||||+++|...+..+
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            4567999999999999999999999876       3344455566665555666666  689999999999998888888


Q ss_pred             cccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHh----CCeEE
Q 028546           79 IRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEF----GVMFI  149 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~  149 (207)
                      +..+|++|+|+|+++   +++.+.+.    .+...   ++|+++++||+|+.++...  ..+++..++...    +.+++
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            999999999999987   44444432    22222   5788999999999753221  123344444444    57899


Q ss_pred             EEecCCCCChHHHHHHHHHHcC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ++||++|.|+++++++|.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999999999999999764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=3.9e-22  Score=160.28  Aligned_cols=163  Identities=22%  Similarity=0.191  Sum_probs=106.2

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHhcCC---CCCccccccceeeeEE--EEEE-------------C--C----eEEE
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFMYDK---FDTTYQATIGIDFLSK--TMYL-------------E--D----RTVR   59 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~--~~~~-------------~--~----~~~~   59 (207)
                      +.....++|+++|+.++|||||+++|.+..   +..+..+..+++....  .+..             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            344567999999999999999999998543   3344444334433222  2211             1  1    1368


Q ss_pred             EEEEecCChhhhccccccccccCCEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028546           60 LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--S  133 (207)
Q Consensus        60 ~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~  133 (207)
                      +.+|||||+++|...+...+..+|++|+|+|+++    +++.+.+..    +... + ..|+++++||+|+.+..+.  .
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l-~-~~~iivv~NK~Dl~~~~~~~~~  156 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL-G-IDKIIIVQNKIDLVDEKQAEEN  156 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT-T-CCCEEEEEECTTSSCTTTTTTH
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc-C-CCeEEEEEEccCCCCHHHHHHH
Confidence            9999999999998887777889999999999995    344444332    2222 1 3579999999999765442  3


Q ss_pred             HHHHHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          134 IEEGDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       134 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      .+++..++..   .+++++++||++|.|+++++++|.+.+..
T Consensus       157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            4455555554   25789999999999999999999997764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=1.8e-22  Score=155.97  Aligned_cols=163  Identities=16%  Similarity=0.186  Sum_probs=114.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChh---------hhcccc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLI   75 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~   75 (207)
                      ..+..+|+++|++|+|||||+++|++..+.. ...+..+.+.....+..++  .++.+|||||..         .+....
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence            4556789999999999999999999987632 2233333333333444444  589999999987         234455


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecC
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAK  154 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (207)
                      ..++..+|++++|+|+++   +.....++.....  ..+.|+++++||+|+.............+...++. .++++|++
T Consensus        83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~  157 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE  157 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence            677889999999999976   3333334433322  23589999999999865222222333444444565 79999999


Q ss_pred             CCCChHHHHHHHHHHcCCCcc
Q 028546          155 AGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      ++.|+++++++|.+.+.+...
T Consensus       158 ~g~~v~~l~~~i~~~l~~~~~  178 (301)
T 1ega_A          158 TGLNVDTIAAIVRKHLPEATH  178 (301)
T ss_dssp             TTTTHHHHHHHHHTTCCBCCC
T ss_pred             CCCCHHHHHHHHHHhCCcCCC
Confidence            999999999999998875543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=8.1e-22  Score=158.17  Aligned_cols=167  Identities=17%  Similarity=0.105  Sum_probs=116.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccc-cce--------------eeeEEEEEE---CCeEEEEEEEecC
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQAT-IGI--------------DFLSKTMYL---EDRTVRLQLWDTA   66 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~-~~~--------------~~~~~~~~~---~~~~~~~~i~D~~   66 (207)
                      ...+.++|+++|++++|||||+++|++.......... .+.              +........   ......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            4456799999999999999999999986443211000 000              000000000   1123689999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHh
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEF  144 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~  144 (207)
                      |+++|...+..++..+|++|+|+|++++.++....+++..+....  ..|+++++||+|+.+..+..  .+++..+....
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998765666667776665443  25899999999997543321  12222222222


Q ss_pred             ---CCeEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          145 ---GVMFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       145 ---~~~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                         +++++++||++|.|+++++++|.+.+...
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~  193 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTP  193 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence               56899999999999999999999987643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.89  E-value=5.4e-23  Score=167.55  Aligned_cols=151  Identities=21%  Similarity=0.300  Sum_probs=116.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChh-hhccc--------ccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRSL--------IPSYI   79 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~--------~~~~~   79 (207)
                      ++|+++|.+++|||||+|+|.+..+ .....++++.+.....+.+++  ..+.+|||||.. .+...        ...++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            8999999999999999999998864 345567777788778888877  579999999987 54421        24567


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      ..+|++|+|+|++++.+++.. ++++.+     .++|+++|+||+|+.+.  ...++...+. ..+++++++|+++|.|+
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~-~il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~Gi  392 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDR-KILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGEGL  392 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTCCH
T ss_pred             hcccEEEEEecCCCCCCHHHH-HHHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCCCH
Confidence            899999999999987666553 233322     26899999999999643  3334443332 23468999999999999


Q ss_pred             HHHHHHHHHHcC
Q 028546          160 KPLFRKIAAALP  171 (207)
Q Consensus       160 ~~~~~~l~~~~~  171 (207)
                      ++++++|.+.+.
T Consensus       393 ~eL~~~l~~~~~  404 (482)
T 1xzp_A          393 EKLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.89  E-value=1.2e-23  Score=170.47  Aligned_cols=176  Identities=15%  Similarity=0.181  Sum_probs=109.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChh--------hhcccccccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI   79 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   79 (207)
                      ..+|+++|.+|+|||||+|+|.+..+. ....++.+.+.......+.+  ..+.+|||||+.        .+...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            478999999999999999999987764 23344444454444444444  579999999975        5666777889


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAGFN  158 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (207)
                      .++|++|+|+|+.++.+...  .++..+...  .++|+++|+||+|+.+.....    ..+. .+++ +++++||.+|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCC
Confidence            99999999999987655433  233333222  368999999999986432211    1111 3455 789999999999


Q ss_pred             hHHHHHHHHHHcCCCccCcccccccccccccCCCCCC
Q 028546          159 IKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNS  195 (207)
Q Consensus       159 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (207)
                      +.++++++.+.+.+...............-+.+++|+
T Consensus       152 v~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGK  188 (436)
T 2hjg_A          152 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGK  188 (436)
T ss_dssp             HHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSH
T ss_pred             hHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCH
Confidence            9999999999887432111111112333456666653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=1.9e-22  Score=163.27  Aligned_cols=154  Identities=19%  Similarity=0.216  Sum_probs=106.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEEC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLE   54 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (207)
                      ....++|+++|++++|||||+++|++..                               ...++.++.+++.....+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            3456999999999999999999995431                               122233455666666666555


Q ss_pred             CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 028546           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS---FL---NTSRWIEEVRTERGGDVI-IVLVGNKTDLV  127 (207)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~  127 (207)
                      +  ..+.||||||+++|...+..++..+|++|||+|++++..   |+   ...+.+..+...   .+| ++|++||+|+.
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v~~iIvviNK~Dl~  168 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GVKHLIVLINKMDDP  168 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CCCeEEEEeecCCCc
Confidence            5  589999999999999999889999999999999997531   11   111222222221   456 99999999985


Q ss_pred             CCC--CCC----HHHHHHHHHHhC------CeEEEEecCCCCChHHHHH
Q 028546          128 DKR--QVS----IEEGDGKAKEFG------VMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       128 ~~~--~~~----~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~  164 (207)
                      +..  +..    ..+...+...++      ++++++||++|.|+.++++
T Consensus       169 ~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          169 TVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            321  111    222333444443      4799999999999999655

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=1.9e-22  Score=151.15  Aligned_cols=164  Identities=14%  Similarity=0.147  Sum_probs=110.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ccceeeeEEEEEECCeEEEEEEEecCCh-----------hhhc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQ-----------ERFR   72 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~   72 (207)
                      ....++|+|+|++|+|||||+++|++..+.....+  +.+.+.....+.+++  ..+.||||||.           ..+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHH
Confidence            45569999999999999999999999888655544  455555556666666  47899999993           3444


Q ss_pred             cccccccccCCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC------HHHHHHHHHHh
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQS--FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS------IEEGDGKAKEF  144 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~  144 (207)
                      ..+..+++++|++|+|+|+++...  ...+..+...+....  ..|+++|+||+|+.+...+.      ......+....
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            455556678999999999975332  222333322222221  35899999999987654433      24567777888


Q ss_pred             CCeEEEEecCCC-----CChHHHHHHHHHHcCCC
Q 028546          145 GVMFIETSAKAG-----FNIKPLFRKIAAALPGM  173 (207)
Q Consensus       145 ~~~~~~~s~~~~-----~~i~~~~~~l~~~~~~~  173 (207)
                      +..++.++...+     .++.++++.+.+.+.+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            888888877654     68999999998887543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=2.8e-22  Score=166.89  Aligned_cols=159  Identities=18%  Similarity=0.233  Sum_probs=112.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC--CC-------------CccccccceeeeEEEEEE---CCeEEEEEEEecCChhh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDK--FD-------------TTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQER   70 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~--~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~   70 (207)
                      -.+|+++|+.++|||||+++|+...  +.             .+..++.++......+.+   ++..+.+++|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4799999999999999999998521  11             011122222222222322   45568999999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---e
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---M  147 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  147 (207)
                      |...+..++..+|++|+|+|++++.+.+....|+.....    ++|+++++||+|+.+..  .......+...+++   +
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence            999999999999999999999987666776666665532    58999999999996543  12233445555666   4


Q ss_pred             EEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          148 FIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ++++||++|.|+++++++|.+.+...
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             EEEeecccCCCchhHHHHHhhcCCCc
Confidence            99999999999999999999998754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=4.2e-22  Score=165.57  Aligned_cols=160  Identities=19%  Similarity=0.289  Sum_probs=114.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC--CCC-------------CccccccceeeeEEEEEE---CCeEEEEEEEecCChh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD--KFD-------------TTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE   69 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~--~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   69 (207)
                      +-.+|+++|+.++|||||+++|+..  .+.             .+..++.++......+.+   ++..+.+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            4579999999999999999999752  111             011122222211122222   4556899999999999


Q ss_pred             hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q 028546           70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV---  146 (207)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  146 (207)
                      +|...+..++..+|++|+|+|++++.+.+....|.....    .++|+++++||+|+.+..  .......+...+++   
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~  158 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPE  158 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGG
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcc
Confidence            999999899999999999999998777777777766543    268999999999986543  12233445555566   


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHcCCC
Q 028546          147 MFIETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      +++++||++|.|+++++++|.+.+...
T Consensus       159 ~vi~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          159 EAILASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             GCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             cEEEEEeecCCCchHHHHHHHHhcccc
Confidence            489999999999999999999998753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=3e-22  Score=151.79  Aligned_cols=164  Identities=12%  Similarity=0.128  Sum_probs=108.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC-CCCccccc-cceeeeEEEEEECCeEEEEEEEecCChhhhcccc---------
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDTTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI---------   75 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------   75 (207)
                      .+.++|+|+|++|+|||||+++|++.. +.....+. .+.+.........+  ..+.||||||..++....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            456999999999999999999999887 44333333 45555555666666  479999999977654322         


Q ss_pred             --ccccccCCEEEEEEECCChHHH-HHHHHHHHHHHHhcCCCCeEEEEEe-CCCCCCCCCCCH-------HHHHHHHHHh
Q 028546           76 --PSYIRDSSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGN-KTDLVDKRQVSI-------EEGDGKAKEF  144 (207)
Q Consensus        76 --~~~~~~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~~  144 (207)
                        ..+++.+|++|+|+|+++.... ..+..++..+..... ..|+++++| |+|+.+. .+..       .........+
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence              2256889999999999862222 223333333321111 245666666 9998643 2111       2233355555


Q ss_pred             CCe---E--EEEecCCCCChHHHHHHHHHHcCCCc
Q 028546          145 GVM---F--IETSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       145 ~~~---~--~~~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      +..   +  +++||++|.|++++|++|.+.+....
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            532   2  78999999999999999999886543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.88  E-value=1.4e-21  Score=154.35  Aligned_cols=159  Identities=18%  Similarity=0.108  Sum_probs=110.3

Q ss_pred             ee-EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh---------hhcccccccc
Q 028546           10 YK-LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI   79 (207)
Q Consensus        10 ~~-i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~   79 (207)
                      ++ |+++|.+|+|||||+++|.+..+.....+..+.+.....+.+++  ..+.+|||+|.-         .+...+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            45 99999999999999999999887655566777777788888888  478999999962         2333333 46


Q ss_pred             ccCCEEEEEEECCChH--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHh---CCeEEEEec
Q 028546           80 RDSSVAVIVYDVANRQ--SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEF---GVMFIETSA  153 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~s~  153 (207)
                      ..+|++++|+|++++.  ....+..|...+......+.|+++|+||+|+.+..... ...+..++..+   +.+++++|+
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA  335 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISA  335 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            8999999999999876  45555556665555444568999999999986543100 11222233444   347899999


Q ss_pred             CCCCChHHHHHHHHHHcC
Q 028546          154 KAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~  171 (207)
                      +++.|+++++++|.+.+.
T Consensus       336 ~~g~gi~~L~~~I~~~l~  353 (364)
T 2qtf_A          336 LKRTNLELLRDKIYQLAT  353 (364)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc
Confidence            999999999999998765

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=7.1e-23  Score=166.14  Aligned_cols=154  Identities=20%  Similarity=0.237  Sum_probs=107.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc--------cccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI   79 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~   79 (207)
                      .++|+++|++|+|||||+|+|.+..+. ....++++.+.....+.+++  ..+.+|||||...+...+        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            478999999999999999999987543 44456666666666777777  578999999976654333        3357


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      ..+|++|+|+|++++.+... ..|+..+.     ..|+++|+||+|+.+.....  ....+  ..+.+++++|+++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~--~~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYP--ENITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCC--TTCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHh--ccCCcEEEEECCCCCCH
Confidence            89999999999998655444 34444442     36999999999997654433  01111  13568999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028546          160 KPLFRKIAAALPGME  174 (207)
Q Consensus       160 ~~~~~~l~~~~~~~~  174 (207)
                      ++++++|.+.+....
T Consensus       372 ~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          372 DSLETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHhccC
Confidence            999999999987543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.88  E-value=1.1e-21  Score=157.87  Aligned_cols=160  Identities=19%  Similarity=0.181  Sum_probs=112.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC---CCCccccccceeeeEEEEEE---------------C--C----eEEEEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDTTYQATIGIDFLSKTMYL---------------E--D----RTVRLQL   62 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~---------------~--~----~~~~~~i   62 (207)
                      ...++|+++|+.++|||||+++|++..   +..+..+..+++.......+               .  +    ....+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            446999999999999999999998543   33444454444333222222               1  1    1368999


Q ss_pred             EecCChhhhccccccccccCCEEEEEEECCC----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHH
Q 028546           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ--VSIEE  136 (207)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~  136 (207)
                      |||||+++|.......+..+|++|+|+|+++    +++.+.+..    +... + ..|+++++||+|+.+..+  ...++
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~-~-~~~iivviNK~Dl~~~~~~~~~~~~  161 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII-G-QKNIIIAQNKIELVDKEKALENYRQ  161 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH-T-CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc-C-CCcEEEEEECccCCCHHHHHHHHHH
Confidence            9999999998887777889999999999995    344444332    2222 1 357999999999875432  12233


Q ss_pred             HHHHHHH---hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          137 GDGKAKE---FGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       137 ~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      +..++..   .+++++++|+++|.|+++++++|.+.+..
T Consensus       162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            3444433   35789999999999999999999997764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=5.6e-22  Score=155.75  Aligned_cols=122  Identities=15%  Similarity=0.226  Sum_probs=100.2

Q ss_pred             EEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCCe
Q 028546           48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----------RQSFLNTSRWIEEVRTE-RGGDVI  116 (207)
Q Consensus        48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p  116 (207)
                      ...+.+++  +.+.+||++|++.++..|..++++++++|||||+++          ..++.....|+..+... ...++|
T Consensus       185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p  262 (353)
T 1cip_A          185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS  262 (353)
T ss_dssp             EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred             EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence            34455554  789999999999999999999999999999999998          45788888888888653 225799


Q ss_pred             EEEEEeCCCCCCCC---------------CCCHHHHHHHHH-----------HhCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          117 IVLVGNKTDLVDKR---------------QVSIEEGDGKAK-----------EFGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       117 ~ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      ++|++||.|+.+++               ....+++..++.           ..++.+++|||+++.||+++|+++.+.+
T Consensus       263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i  342 (353)
T 1cip_A          263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  342 (353)
T ss_dssp             EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence            99999999985332               356677777765           2456889999999999999999999987


Q ss_pred             C
Q 028546          171 P  171 (207)
Q Consensus       171 ~  171 (207)
                      .
T Consensus       343 ~  343 (353)
T 1cip_A          343 I  343 (353)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=6.3e-24  Score=174.44  Aligned_cols=162  Identities=17%  Similarity=0.191  Sum_probs=117.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +..+|+++|++++|||||+++|.+..+.....++.+.++....+...+. ..+.||||||++.|..++..++..+|++||
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4689999999999999999999987765555556555554444444222 379999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHH---HHHh--CCeEEEEecCCCCChHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGK---AKEF--GVMFIETSAKAGFNIKP  161 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~s~~~~~~i~~  161 (207)
                      |+|++++...+... .+..+.   ..++|++|++||+|+.+..... .......   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99999854443332 222232   2368999999999986533211 1111111   1111  24799999999999999


Q ss_pred             HHHHHHHHcCCCc
Q 028546          162 LFRKIAAALPGME  174 (207)
Q Consensus       162 ~~~~l~~~~~~~~  174 (207)
                      ++++|...+....
T Consensus       158 Lle~I~~l~~~~~  170 (537)
T 3izy_P          158 LAEATIALAEMLE  170 (537)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHhhhccc
Confidence            9999999876443

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.87  E-value=4.5e-22  Score=163.04  Aligned_cols=151  Identities=17%  Similarity=0.243  Sum_probs=100.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECCe
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLEDR   56 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   56 (207)
                      ..+||+++|++++|||||+++|++..                               ...+..++.+++.....+...+ 
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-  110 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-  110 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence            46999999999999999999997541                               1122223444444444444443 


Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHH-----HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLN-----TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-----~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                       +.+.||||||+++|...+..++..+|++|+|+|++++..+..     ...+...+....+ ..|++||+||+|+.+..+
T Consensus       111 -~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          111 -ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             -CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-CCCEEEEEECGGGGTTCH
T ss_pred             -ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-CCcEEEEEECcCcccchH
Confidence             689999999999999999999999999999999998643221     1222222222222 356999999999976444


Q ss_pred             CCHHHHHHHH----HHh-----CCeEEEEecCCCCChHH
Q 028546          132 VSIEEGDGKA----KEF-----GVMFIETSAKAGFNIKP  161 (207)
Q Consensus       132 ~~~~~~~~~~----~~~-----~~~~~~~s~~~~~~i~~  161 (207)
                      ...++.....    ..+     +++++++||++|.|+++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            3333333333    223     45799999999999875

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.87  E-value=1.8e-22  Score=154.15  Aligned_cols=162  Identities=15%  Similarity=0.229  Sum_probs=94.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------ccccceeeeEEEEEECCeEEEEEEEecCChhhh------
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT-Y-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------   71 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------   71 (207)
                      ....++|+|+|.+|+|||||+|++++...... +       .++.+.+.....+..++..+.+.+|||||..+.      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            34569999999999999999999887655332 2       344455554455555555579999999996321      


Q ss_pred             -cccc-------cccc-------------ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           72 -RSLI-------PSYI-------------RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        72 -~~~~-------~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                       ....       ..++             ..+|+++++++.+...-...-..++..+..    .+|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence             1111       2222             237899999987652211222333444432    58999999999986543


Q ss_pred             CCC--HHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          131 QVS--IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      +..  ...+.......+++++++|+.++.++++++++|.+.++
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence            322  12344455567899999999999999999999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=2.4e-21  Score=157.03  Aligned_cols=163  Identities=23%  Similarity=0.246  Sum_probs=110.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc-----------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----------   75 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   75 (207)
                      ..++|+++|++|+|||||++++.+.... ....++.+.+.....+.+++.  .+.+|||+|..+.....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999988652 334455666666667777875  68899999975432211           


Q ss_pred             -ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-HHH----hCCeEE
Q 028546           76 -PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGK-AKE----FGVMFI  149 (207)
Q Consensus        76 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~----~~~~~~  149 (207)
                       ..++..+|++++|+|++++.+.... .+...+..   .+.|+++++||+|+.+......++.... ...    .+.+++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             2356789999999999875554432 22222322   2589999999999976554444333222 222    256899


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCCccC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGMETL  176 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~~~~  176 (207)
                      ++||++|.|++++|+.+.+.+.....+
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~~~~  359 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASYTTK  359 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHHTCC
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhhccc
Confidence            999999999999999999987655433

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=1.5e-22  Score=163.86  Aligned_cols=156  Identities=17%  Similarity=0.254  Sum_probs=103.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------cccccceeeeEEEEEEC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYD--KFDTT-----------------------------YQATIGIDFLSKTMYLE   54 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   54 (207)
                      ..+.++|+++|++++|||||+++|++.  .+...                             ..++.+++.....+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            345799999999999999999999864  33211                             12333444443344433


Q ss_pred             CeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHh-----cCCCCeEEEEEeCCCCCCC
Q 028546           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE-----RGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~-----~~~~~p~ivv~nK~D~~~~  129 (207)
                      +  ..+.+|||||+.+|...+..++..+|++|+|+|+++ .+|+.+..|..+....     .....|+++++||+|+.+.
T Consensus        83 ~--~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           83 K--YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             S--CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            3  589999999999999988889999999999999998 6666543332222111     1112468999999999753


Q ss_pred             C--C----CCHHHHHHHHHHhC-----CeEEEEecCCCCChHHHHH
Q 028546          130 R--Q----VSIEEGDGKAKEFG-----VMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       130 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~  164 (207)
                      .  +    ...+++..++..++     ++++++||++|.|+.+++.
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1  1    11344455555555     6799999999999986543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=1.2e-22  Score=165.36  Aligned_cols=177  Identities=16%  Similarity=0.178  Sum_probs=109.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCC--------hhhhcccccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIPS   77 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~   77 (207)
                      +...+|+++|.+|+|||||+|+|++..+. ....++.+.+.....  +......+.+|||||        ++.+......
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~   98 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI   98 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence            45679999999999999999999987764 222333433333333  333335899999999        6777778888


Q ss_pred             ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q 028546           78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV-MFIETSAKAG  156 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (207)
                      ++.++|++|+|+|..++.  .....++..+...  .++|+++|+||+|+.+....    ... ....++ .++++||.+|
T Consensus        99 ~~~~ad~il~VvD~~~~~--~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~~----~~e-~~~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGV--TAADEEVAKILYR--TKKPVVLAVNKLDNTEMRAN----IYD-FYSLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHCSEEEEEEESSSCS--CHHHHHHHHHHTT--CCSCEEEEEECC-------------CC-SGGGSSSSEEECCTTTC
T ss_pred             hHhhCCEEEEEEeCCCCC--ChHHHHHHHHHHH--cCCCEEEEEECccchhhhhh----HHH-HHHcCCCceEEeecccc
Confidence            899999999999997532  2223344333332  36899999999998543211    011 112333 5789999999


Q ss_pred             CChHHHHHHHHHHcCCCccCcccccccccccccCCCCC
Q 028546          157 FNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVN  194 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (207)
                      .|+.++++++.+.+.................-+.++++
T Consensus       170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vG  207 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVG  207 (456)
T ss_dssp             TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSS
T ss_pred             cchHHHHHHHHhhcccccccccccccceeEEecCCCCC
Confidence            99999999999887643322222222223345555555

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=4.3e-21  Score=148.73  Aligned_cols=125  Identities=15%  Similarity=0.156  Sum_probs=99.3

Q ss_pred             eeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCC
Q 028546           46 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------NRQSFLNTSRWIEEVRTER-GGD  114 (207)
Q Consensus        46 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~  114 (207)
                      +....+.+.+  +.+.+||++|+++++..|..|+++++++|||+|++          +..++.....|+..+.... ..+
T Consensus       157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            3444555555  78999999999999999999999999999999665          5677888888888775432 257


Q ss_pred             CeEEEEEeCCCCCCCC----------------CCCHHHHHHHHH----------HhCCeEEEEecCCCCChHHHHHHHHH
Q 028546          115 VIIVLVGNKTDLVDKR----------------QVSIEEGDGKAK----------EFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus       115 ~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      +|++|++||.|+.+++                ....+++..+..          ..++.++++||+++.||+++|..+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            9999999999986543                356667766632          33567889999999999999999999


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+..
T Consensus       315 ~Il~  318 (327)
T 3ohm_A          315 TILQ  318 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=1.1e-21  Score=158.70  Aligned_cols=151  Identities=21%  Similarity=0.199  Sum_probs=102.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC---CCc------------------------------cccccceeeeEEEEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DTT------------------------------YQATIGIDFLSKTMYL   53 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~   53 (207)
                      ...++|+++|++++|||||+++|++...   ...                              ..++.+++.....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3459999999999999999999986531   100                              0012233333333333


Q ss_pred             CCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-
Q 028546           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV-  132 (207)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-  132 (207)
                      .+  ..+.+|||||+++|...+..++..+|++|+|+|++++.. ....+++..+... + ..|+++|+||+|+.+..+. 
T Consensus       102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~-~-~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLL-G-IKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHT-T-CCEEEEEEECTTTTTSCHHH
T ss_pred             CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc-C-CCeEEEEEEcCcCCcccHHH
Confidence            33  579999999999998888888999999999999997542 2233344433332 1 2469999999999753211 


Q ss_pred             ---CHHHHHHHHHHhC-----CeEEEEecCCCCChHHH
Q 028546          133 ---SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPL  162 (207)
Q Consensus       133 ---~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~  162 (207)
                         ...+...++..++     ++++++||++|.|++++
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence               1233445555666     67999999999999874

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=4.1e-21  Score=158.21  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=84.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------------------CCCC----ccccccceeeeEEEEEECCeEEEEEEEec
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KFDT----TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (207)
                      +..+|+|+|++++|||||+++|+..                  .+..    +..++.++......+...+  +.+.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            4589999999999999999999611                  1100    1112333334444455555  68999999


Q ss_pred             CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      ||+.+|...+..+++.+|++|+|+|++++.+......|. .+..   .++|+++|+||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            999999999999999999999999999866655554443 3332   2689999999999854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.2e-21  Score=141.71  Aligned_cols=117  Identities=19%  Similarity=0.323  Sum_probs=89.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---cccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccccc-
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-   81 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   81 (207)
                      ....++|+++|++|+|||||+++|.+..+...   ..++.+.++         ..+.+.+||+||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35679999999999999999999998876431   122222211         33579999999999888888777766 


Q ss_pred             ---CCEEEEEEECC-ChHHHHHHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCCCC
Q 028546           82 ---SSVAVIVYDVA-NRQSFLNTSRWIEEVRTE----RGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        82 ---~d~~ilv~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~  131 (207)
                         +|++|+|+|++ +..++..+..|+..+...    ...+.|+++|+||+|+.+...
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 889999988888777654    234799999999999976554

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=5e-21  Score=153.29  Aligned_cols=159  Identities=17%  Similarity=0.163  Sum_probs=110.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC-------CCCC---------ccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD-------KFDT---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      +.++|+++|++++|||||+++|++.       .+..         +..+..+++.  ....+......+.+|||||+.+|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence            4689999999999999999999863       1111         1122233333  23333333358999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC--
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQV---SIEEGDGKAKEFG--  145 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  145 (207)
                      ...+..++..+|++|+|+|+++....+.. +.+..+...   ++| +++++||+|+.+..+.   ..++...++..++  
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88888889999999999999974333322 223333322   477 7899999998642211   1234455566555  


Q ss_pred             ---CeEEEEecCCCCC----------hHHHHHHHHHHcCC
Q 028546          146 ---VMFIETSAKAGFN----------IKPLFRKIAAALPG  172 (207)
Q Consensus       146 ---~~~~~~s~~~~~~----------i~~~~~~l~~~~~~  172 (207)
                         ++++++||++|.|          +.++++.|.+.+..
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence               5899999999764          88999999988763

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.85  E-value=1.1e-20  Score=157.37  Aligned_cols=158  Identities=22%  Similarity=0.211  Sum_probs=106.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC----------------CeEEEEEEEecCChhh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER   70 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~   70 (207)
                      ++.++|+++|++++|||||+++|++..+........+.+.....+...                .....+.||||||+.+
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            356899999999999999999998765533211111111111111110                0112599999999999


Q ss_pred             hccccccccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC------------HH
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS------------IE  135 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~  135 (207)
                      |..++..++..+|++|+|+|+++   +++++.+..    +..   .++|+++++||+|+.......            ..
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999998   666655432    222   268999999999986432210            00


Q ss_pred             -----------HHHHHHHHhC---------------CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          136 -----------EGDGKAKEFG---------------VMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       136 -----------~~~~~~~~~~---------------~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                                 +........+               .+++++||++|.|+++++++|...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                       1111111112               37999999999999999999998765

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=1.5e-21  Score=156.83  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=112.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--------CCCCc---------cccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDTT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      ...++|+++|++++|||||+++|++.        .+...         ..++.+++.  ....+......+.+|||||++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChH
Confidence            45699999999999999999999873        22111         122333333  333333333589999999999


Q ss_pred             hhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC
Q 028546           70 RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQV---SIEEGDGKAKEFG  145 (207)
Q Consensus        70 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  145 (207)
                      +|...+..++..+|++|+|+|++++.. ....+++..+...   ++| +++++||+|+.+..+.   ...+...++..++
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998888888999999999999987543 2334555555443   477 8999999998642211   1223445555554


Q ss_pred             -----CeEEEEecCCCCC------------------hHHHHHHHHHHcC
Q 028546          146 -----VMFIETSAKAGFN------------------IKPLFRKIAAALP  171 (207)
Q Consensus       146 -----~~~~~~s~~~~~~------------------i~~~~~~l~~~~~  171 (207)
                           .+++++||++|.|                  +.++++.|.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6899999999987                  7888888888775

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.6e-21  Score=161.11  Aligned_cols=152  Identities=18%  Similarity=0.245  Sum_probs=103.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-------------------------------ccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-------------------------------QATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   55 (207)
                      ...++|+++|++++|||||+++|++.......                               .++.+++.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            34699999999999999999999866332111                               13444444444554444


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHH------HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL------NTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                        +.+.||||||+++|...+..++..+|++|+|+|++++. ++      ........+....+ ..|++||+||+|+.+.
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~-~e~~~~~~~qt~e~l~~~~~lg-i~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA-FESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH-HHTTCCTTSHHHHHHHHHHTTT-CCEEEEEEECTTTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc-ccccchhhhHHHHHHHHHHHcC-CCeEEEEEecccccch
Confidence              58999999999999999999999999999999998642 11      11111111222222 3569999999999764


Q ss_pred             CCCCHHHH----HHHHHHh-----CCeEEEEecCCCCChHHH
Q 028546          130 RQVSIEEG----DGKAKEF-----GVMFIETSAKAGFNIKPL  162 (207)
Q Consensus       130 ~~~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~i~~~  162 (207)
                      .+...+.+    ..+...+     +++++++||++|.|+.++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            33323322    3333333     358999999999999876

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=6e-21  Score=149.88  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------NRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKT  124 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~  124 (207)
                      ..+.+.+|||+|+++++..|..++++++++|||||++          +..+++....|+..+.... ..++|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7789999999998886542 3579999999999


Q ss_pred             CCCCCCC--C-------------------CHHHHHHHHHH----------------hCCeEEEEecCCCCChHHHHHHHH
Q 028546          125 DLVDKRQ--V-------------------SIEEGDGKAKE----------------FGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus       125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |+.+++.  +                   ..+++..++..                ..+.+++|||+++.||+++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   13444444332                123468999999999999999999


Q ss_pred             HHcC
Q 028546          168 AALP  171 (207)
Q Consensus       168 ~~~~  171 (207)
                      +.+.
T Consensus       341 ~~I~  344 (354)
T 2xtz_A          341 ETLR  344 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=3.8e-21  Score=152.22  Aligned_cols=146  Identities=12%  Similarity=0.046  Sum_probs=105.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      +|+++|++++|||||+++|+        .+..+++.....+...+  ..+.+|||||+++|.......+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998        23333444444444444  579999999999998888888899999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhcCCCCeE-EEEEe-CCCCCCCCCCCH--HHHHHHHHHh---CCeEEE--EecCC---CCC
Q 028546           91 VANRQSFLNTSRWIEEVRTERGGDVII-VLVGN-KTDLVDKRQVSI--EEGDGKAKEF---GVMFIE--TSAKA---GFN  158 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~s~~~---~~~  158 (207)
                       +. ..+....+++..+...   .+|. ++++| |+|+ ++.....  +++..+...+   .+++++  +||++   +.|
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             54 2334445555544433   4666 88999 9998 4322211  2333333333   368999  99999   999


Q ss_pred             hHHHHHHHHHHcCC
Q 028546          159 IKPLFRKIAAALPG  172 (207)
Q Consensus       159 i~~~~~~l~~~~~~  172 (207)
                      +++++++|.+.+..
T Consensus       167 i~~L~~~l~~~~~~  180 (370)
T 2elf_A          167 VDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccc
Confidence            99999999988754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.84  E-value=1.6e-22  Score=164.93  Aligned_cols=154  Identities=22%  Similarity=0.264  Sum_probs=109.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ++..+|+++|++++|||||+++|.+..+.....++.+.+.....+..++  ..+.||||||++.|..++...+..+|++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            3568999999999999999999987666544444444444333343444  47899999999999999999999999999


Q ss_pred             EEEECCCh---HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC--CCCHH--HHHHHHHHhC--CeEEEEecCCCC
Q 028546           87 IVYDVANR---QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR--QVSIE--EGDGKAKEFG--VMFIETSAKAGF  157 (207)
Q Consensus        87 lv~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~s~~~~~  157 (207)
                      ||+|++++   ++.+.+    ..+..   .++|+++++||+|+.+..  .+...  ....+...++  ++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999873   333332    22222   258999999999986432  11100  0000112222  689999999999


Q ss_pred             ChHHHHHHHHHH
Q 028546          158 NIKPLFRKIAAA  169 (207)
Q Consensus       158 ~i~~~~~~l~~~  169 (207)
                      |+++++++|...
T Consensus       153 gI~eLle~I~~~  164 (501)
T 1zo1_I          153 GIDELLDAILLQ  164 (501)
T ss_dssp             TCTTHHHHTTTT
T ss_pred             Ccchhhhhhhhh
Confidence            999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=5.1e-22  Score=156.96  Aligned_cols=162  Identities=15%  Similarity=0.246  Sum_probs=88.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccc--------cccceeeeEEEEEECCeEEEEEEEecCCh-------hhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~   71 (207)
                      ..++|+|+|++|+|||||+++|++... .....        ++.+.......+...+..+.+.+|||||.       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            358999999999999999999876543 22221        23333333333444566678999999998       555


Q ss_pred             ccccc-------cccccC-------------CEEEEEEECCChHHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           72 RSLIP-------SYIRDS-------------SVAVIVYDVANRQSFLNTS-RWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        72 ~~~~~-------~~~~~~-------------d~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      ..++.       .++.++             |+++|+++.+ ..++..+. .++..+    ..++|+++|+||+|+...+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence            55554       444433             3455555542 23344433 333333    3468999999999997665


Q ss_pred             CCCH--HHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCCcc
Q 028546          131 QVSI--EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET  175 (207)
Q Consensus       131 ~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~  175 (207)
                      ++..  ..+..++..++++++++|++++.+ ++.|.++.+.+.+.-+
T Consensus       191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            5433  355556666788999999999998 7888777777654443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=9.4e-22  Score=160.35  Aligned_cols=155  Identities=17%  Similarity=0.245  Sum_probs=89.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc--CCCC-----------------------------CccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------TTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (207)
                      ...++|+++|+.++|||||+++|++  +.+.                             .+.....+++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            3458999999999999999999974  2221                             01122334444334444454


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCC-
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKR-  130 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~-  130 (207)
                        ..+.||||||+++|...+...+..+|++|||+|++++.   +|+....+...+......++| ++|++||+|+.+.. 
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              58999999999999998888899999999999999752   232111222222211122466 99999999985421 


Q ss_pred             -C----CCHHHHHHHHHHh-------CCeEEEEecCCCCChHHHH
Q 028546          131 -Q----VSIEEGDGKAKEF-------GVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus       131 -~----~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~  163 (207)
                       +    ....+...++..+       +++++++|+++|.|+.+++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             1    1122345555555       3569999999999998755

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.83  E-value=7e-22  Score=160.75  Aligned_cols=151  Identities=19%  Similarity=0.223  Sum_probs=102.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------ccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDT-----------------------------TYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   55 (207)
                      ...++|+++|++++|||||+++|++.  .+..                             ++.++.+++.....+...+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            45699999999999999999999864  2211                             0112334444444444444


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SFL---NTSRWIEEVRTERGGDVI-IVLVGNKTDLVD  128 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~  128 (207)
                        ..+.||||||+.+|...+..++..+|++|||+|++++.   +|+   ...+.+..+.. .  .+| ++|++||+|+.+
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~--~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L--GVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T--TCCEEEEEEECGGGGT
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c--CCCeEEEEEEcccccc
Confidence              68999999999999998888999999999999999652   221   22222222222 2  354 999999999963


Q ss_pred             CCCC----CHHHHHHHHHHhC-----CeEEEEecCCCCChHHH
Q 028546          129 KRQV----SIEEGDGKAKEFG-----VMFIETSAKAGFNIKPL  162 (207)
Q Consensus       129 ~~~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~  162 (207)
                      ..+.    ...+...++..++     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            2211    1233444555555     68999999999998744

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=3.8e-20  Score=143.94  Aligned_cols=124  Identities=22%  Similarity=0.265  Sum_probs=96.4

Q ss_pred             eEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECC----------ChHHHHHHHHHHHHHHHhc-CCCC
Q 028546           47 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVA----------NRQSFLNTSRWIEEVRTER-GGDV  115 (207)
Q Consensus        47 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~  115 (207)
                      ....+.+.+  +.+.+||++|+++++..|..++++++++|||||++          +..++.....|+..+.... ..++
T Consensus       152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~  229 (340)
T 4fid_A          152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA  229 (340)
T ss_dssp             EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred             EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence            333444444  78999999999999999999999999999999998          6788888888888876543 3579


Q ss_pred             eEEEEEeCCCCCCCC---------------CCCHHHHHHHHH-Hh--------------------------CCeEEEEec
Q 028546          116 IIVLVGNKTDLVDKR---------------QVSIEEGDGKAK-EF--------------------------GVMFIETSA  153 (207)
Q Consensus       116 p~ivv~nK~D~~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~s~  153 (207)
                      |++|++||+|+.+++               ....+++..+.. ++                          .+.++++||
T Consensus       230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA  309 (340)
T 4fid_A          230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA  309 (340)
T ss_dssp             EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred             eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence            999999999985321               123444433332 23                          356789999


Q ss_pred             CCCCChHHHHHHHHHHcCC
Q 028546          154 KAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~  172 (207)
                      +++.+++.+|+.+.+.+..
T Consensus       310 ~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          310 TDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             eCcHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=6.4e-21  Score=147.17  Aligned_cols=159  Identities=19%  Similarity=0.242  Sum_probs=102.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC------ccccc----------------------ccee-------------
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT------TYQAT----------------------IGID-------------   45 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~------~~~~~----------------------~~~~-------------   45 (207)
                      ...++|+|+|.+|+|||||+++|++..+..      ++.++                      .+.+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            456899999999999999999999988731      11222                      0000             


Q ss_pred             ----------eeEEEEEECCeEEEEEEEecCChh-------------hhccccccccccCCEEE-EEEECCChHHHHHHH
Q 028546           46 ----------FLSKTMYLEDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-IVYDVANRQSFLNTS  101 (207)
Q Consensus        46 ----------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~~  101 (207)
                                .....+...+ ...+.+|||||..             .+...+..++..++.+| +|+|+++..+.....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             cccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                      0000000110 2479999999963             34556677888888776 799998654433333


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--C-CeEEEEecCCCCChHHHHHHHHHH
Q 028546          102 RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--G-VMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       102 ~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .++..+.   ..+.|+++|+||+|+.+................  + .+++++||++|.|+++++++|.+.
T Consensus       183 ~~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            3444332   246899999999999765443222222110011  2 367899999999999999998874

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.82  E-value=3e-19  Score=135.41  Aligned_cols=126  Identities=13%  Similarity=0.165  Sum_probs=90.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc-----
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-----   80 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   80 (207)
                      +++++|+++|..|+|||||+++|++..+. ....+..+.......+..++  ..+.+|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            46799999999999999999999988763 23334444555555566666  48999999998877665544443     


Q ss_pred             ----cCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCCCCCHH
Q 028546           81 ----DSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGD--VIIVLVGNKTDLVDKRQVSIE  135 (207)
Q Consensus        81 ----~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~~~~~~  135 (207)
                          ++|+++||++++... +.. ...|+..+....+..  .|+++|+||+|+.+..+...+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence                789999999997644 333 346666676655433  389999999999655544443

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=3.7e-20  Score=161.37  Aligned_cols=162  Identities=17%  Similarity=0.140  Sum_probs=109.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCC-------ccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDK-------FDT-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      ....++|+++|++++|||||+++|++..       +..       ...+..++++....+.+......+.+|||||+.+|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3456999999999999999999998631       100       00122222222222333333468999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC--
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQV---SIEEGDGKAKEFG--  145 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~--  145 (207)
                      ......++..+|++|+|+|++++... ...+++..+...   ++| ++|++||+|+.+..+.   ..+++..++..++  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888889999999999999975322 233444444433   477 7999999999753221   1234455565555  


Q ss_pred             ---CeEEEEecCCC--------CChHHHHHHHHHHcC
Q 028546          146 ---VMFIETSAKAG--------FNIKPLFRKIAAALP  171 (207)
Q Consensus       146 ---~~~~~~s~~~~--------~~i~~~~~~l~~~~~  171 (207)
                         ++++++|+++|        .|+.+++++|.+.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence               58999999999        468899999988775

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=3.4e-21  Score=160.86  Aligned_cols=160  Identities=23%  Similarity=0.285  Sum_probs=87.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC-------------------------------CCCccccccceeeeEEEEEECC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDTTYQATIGIDFLSKTMYLED   55 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (207)
                      ...++|+++|++++|||||+++|++..                               +..+..++.+++.....+... 
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~-  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD-  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence            445899999999999999999996321                               111223344444444444443 


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH---HH--HH-HHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ---SF--LN-TSRWIEEVRTERGGDVI-IVLVGNKTDLVD  128 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~--~~-~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~  128 (207)
                       ...+.||||||+.+|...+..++..+|++|||+|++++.   .+  .. ....+..+.. .  .+| ++||+||+|+.+
T Consensus       254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l--gip~iIvviNKiDl~~  329 (592)
T 3mca_A          254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L--GISEIVVSVNKLDLMS  329 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S--SCCCEEEEEECGGGGT
T ss_pred             -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c--CCCeEEEEEecccccc
Confidence             368999999999999998888999999999999998532   11  11 1111222222 2  355 999999999865


Q ss_pred             CCCCCH----HHHHHHH-HHhCC-----eEEEEecCCCCChH--------------HHHHHHHHHcC
Q 028546          129 KRQVSI----EEGDGKA-KEFGV-----MFIETSAKAGFNIK--------------PLFRKIAAALP  171 (207)
Q Consensus       129 ~~~~~~----~~~~~~~-~~~~~-----~~~~~s~~~~~~i~--------------~~~~~l~~~~~  171 (207)
                      ......    ..+..+. ..+++     +++++||++|.|+.              .+++.|...+.
T Consensus       330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            322112    2222233 23344     69999999999998              67777766543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1e-19  Score=133.34  Aligned_cols=159  Identities=16%  Similarity=0.208  Sum_probs=100.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----------hccc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL   74 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~   74 (207)
                      +.....+|+++|++|+|||||++++.+..+.....++.+.......+.+++   .+.+||+||...          +...
T Consensus        22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   98 (210)
T 1pui_A           22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRA   98 (210)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHH
Confidence            344568999999999999999999998874333333444333333333333   578999999632          2333


Q ss_pred             ccccc---ccCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHhC--
Q 028546           75 IPSYI---RDSSVAVIVYDVANRQSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEFG--  145 (207)
Q Consensus        75 ~~~~~---~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--  145 (207)
                      ...++   ..++++++++|++++.+...  +..|+.    .  ...|++++.||+|+.+..+.  ....+..++...+  
T Consensus        99 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~  172 (210)
T 1pui_A           99 LGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD  172 (210)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC
T ss_pred             HHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC
Confidence            33344   46899999999987544332  222322    1  25889999999998653221  1234444444443  


Q ss_pred             CeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          146 VMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       146 ~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      +.++++|++++.++++++++|.+.+.+
T Consensus       173 ~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          173 VQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            478899999999999999999998764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.81  E-value=2.4e-19  Score=151.74  Aligned_cols=121  Identities=14%  Similarity=0.132  Sum_probs=82.7

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------------------ccccceeeeEEEEEECCeEEEEEE
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY------------------QATIGIDFLSKTMYLEDRTVRLQL   62 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i   62 (207)
                      |.+....+-.+|+++|+.|+|||||+++|++.......                  ....++......+...+  +.+.+
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nl   78 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFL   78 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEE
Confidence            55666666789999999999999999999843221000                  11222322333333343  68999


Q ss_pred             EecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      |||||+.+|...+..++..+|++++|+|+++...... ..++..+...   ++|+++++||+|+.
T Consensus        79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            9999999999889999999999999999986543333 2344444432   58999999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=1.3e-18  Score=139.16  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=111.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh----hcccccc---ccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~d   83 (207)
                      .|+++|++|||||||++++.+........+..+.......+..++ ...+.+||+||...    +..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            578999999999999999998754222223333344444455554 23789999999632    1112222   245799


Q ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           84 VAVIVYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      .+++++|++ ...+..+..+...+.....  ...|.++++||+|+...  .............+..++.+||+++.|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999997 4556666666655544321  24788999999998654  223334444455678999999999999999


Q ss_pred             HHHHHHHHcCCCcc
Q 028546          162 LFRKIAAALPGMET  175 (207)
Q Consensus       162 ~~~~l~~~~~~~~~  175 (207)
                      ++++|.+.+.+...
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999976544

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=5.8e-18  Score=139.59  Aligned_cols=115  Identities=22%  Similarity=0.209  Sum_probs=78.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------ccccccceeeeEEEEEECCeEEEEEEEec
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDT--------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (207)
                      +..+|+++|++++|||||+++|+...  +..                    +..++.++......+...+  +.+.+|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            46899999999999999999998531  100                    0011112222223334444  68999999


Q ss_pred             CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      ||+.+|...+..++..+|++|+|+|++++..... ..++..+   ...++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~---~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT---RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence            9999998888889999999999999987532222 2222222   223689999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=3.7e-18  Score=130.00  Aligned_cols=126  Identities=11%  Similarity=0.096  Sum_probs=85.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccc--------
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS--------   77 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------   77 (207)
                      ...++|+++|.+|+|||||+|+|++..+.. ...+..+.+.....+...+  ..+.+|||||..++......        
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            357999999999999999999999887632 2223333333333444444  68999999998765433221        


Q ss_pred             -ccccCCEEEEEEECCChHHHHH-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCCCCCCHH
Q 028546           78 -YIRDSSVAVIVYDVANRQSFLN-TSRWIEEVRTERGGD--VIIVLVGNKTDLVDKRQVSIE  135 (207)
Q Consensus        78 -~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~~~~~~  135 (207)
                       ....+|++|||+|++.. ++.. ...|+..+....+.+  .|+++|+||+|+.++.+...+
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~  175 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD  175 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence             13479999999998753 2333 346777776655433  699999999999766554443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=4.1e-18  Score=144.68  Aligned_cols=116  Identities=20%  Similarity=0.275  Sum_probs=83.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CC------CC----------ccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF------DT----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      .+..+|+|+|++++|||||+++|+..  .+      ..          +.....++......+...+  +.+.+|||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence            44689999999999999999999832  11      00          0012233333334444454  68999999999


Q ss_pred             hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      .+|...+..++..+|++|+|+|+++..+......|.. +...   ++|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            9999999999999999999999998777666655554 3322   689999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.77  E-value=8.1e-19  Score=136.39  Aligned_cols=114  Identities=20%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             EEEEEEecCChhh-------------hccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028546           58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNK  123 (207)
Q Consensus        58 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK  123 (207)
                      ..+.+|||||..+             +......++..+|++|+|+|.++.. .......+...+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4799999999653             4455677889999999999984322 111111222222   2236899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHhCCeEEEEec---CC---CCChHHHHHHHHHHcCCCc
Q 028546          124 TDLVDKRQVSIEEGDGKAKEFGVMFIETSA---KA---GFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~---~~~i~~~~~~l~~~~~~~~  174 (207)
                      +|+.+......+........++..++++++   .+   +.|+.++++.+.+.+....
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            999765542232222111112245666654   44   7899999999999887543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.77  E-value=2.3e-18  Score=146.30  Aligned_cols=162  Identities=12%  Similarity=0.178  Sum_probs=106.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccccccee--ee-----EEEEEE--------------------------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGID--FL-----SKTMYL--------------------------   53 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~--~~-----~~~~~~--------------------------   53 (207)
                      ..++|+|+|.+|+|||||+|+|++..+.. ...+++..-  +.     ..+..+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            35899999999999999999999887532 223333100  00     001111                          


Q ss_pred             --------------------CCeE--EEEEEEecCChhhh---ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHH
Q 028546           54 --------------------EDRT--VRLQLWDTAGQERF---RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR  108 (207)
Q Consensus        54 --------------------~~~~--~~~~i~D~~G~~~~---~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~  108 (207)
                                          ....  ..+.+|||||....   ...+..++.++|++|+|+|++++.+......|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                1000  25899999996653   3455678899999999999998766666555544433


Q ss_pred             HhcCCCCeEEEEEeCCCCCCCCCCCHH----------HHHHH----HH-H--------hCCeEEEEecC-----------
Q 028546          109 TERGGDVIIVLVGNKTDLVDKRQVSIE----------EGDGK----AK-E--------FGVMFIETSAK-----------  154 (207)
Q Consensus       109 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~-~--------~~~~~~~~s~~-----------  154 (207)
                      .   ...|+++|+||+|+........+          .....    .. .        ...+++++|++           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   25789999999998654311110          11111    11 1        12369999999           


Q ss_pred             ---CCCChHHHHHHHHHHcCC
Q 028546          155 ---AGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       155 ---~~~~i~~~~~~l~~~~~~  172 (207)
                         ++.|+++++++|.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999987753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.76  E-value=1.7e-17  Score=140.91  Aligned_cols=118  Identities=22%  Similarity=0.253  Sum_probs=84.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc--CCCCC----------------ccccccceeeeEEEEEECCeEEEEEEEecC
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMY--DKFDT----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (207)
                      +..+..+|+|+|++++|||||+++|+.  +.+..                +..+..++......+.+.+  +.+.+||||
T Consensus         6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP   83 (693)
T 2xex_A            6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTP   83 (693)
T ss_dssp             CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECc
Confidence            345568999999999999999999984  22210                0012233333334444554  689999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      |+.++...+..+++.+|++|+|+|++++.+......|.. +...   ++|+++|+||+|+..
T Consensus        84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            999999889999999999999999998766666555443 3332   689999999999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.76  E-value=2.3e-19  Score=143.11  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEE---------------------ECC-eEEEEEEEecCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTAG   67 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G   67 (207)
                      ++|+++|.+++|||||+|+|++........+.++++.......                     +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998875433444444443333221                     122 246899999999


Q ss_pred             hhhh----cccc---ccccccCCEEEEEEECCCh
Q 028546           68 QERF----RSLI---PSYIRDSSVAVIVYDVANR   94 (207)
Q Consensus        68 ~~~~----~~~~---~~~~~~~d~~ilv~d~~~~   94 (207)
                      ....    ..+.   ..+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            7532    2222   2457899999999999874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=2.9e-19  Score=137.97  Aligned_cols=166  Identities=15%  Similarity=0.217  Sum_probs=89.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC-CCCCccc--------cccceeeeEEEEEECCeEEEEEEEecCCh-------hhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDTTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~   71 (207)
                      ..++|+|+|++|+|||||++++.+. .++....        ++.........+...+....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999998875 4433221        11111111222223344568999999997       444


Q ss_pred             ccccc-------cccc-------------cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           72 RSLIP-------SYIR-------------DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        72 ~~~~~-------~~~~-------------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      .....       .++.             .+++++|+.+.+. .+++.+..  ..+.... ...|+++|+||.|+....+
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~-~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH-NKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHT-TTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHH-hcCCEEEEEEeCCCCCHHH
Confidence            43333       3322             2344666665432 12333221  2222222 3578999999999875544


Q ss_pred             C--CHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCCCccCcc
Q 028546          132 V--SIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSS  178 (207)
Q Consensus       132 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~~~~~  178 (207)
                      +  ..+.+..++..+++++|++|++++ +++++|.++.+.+.+..+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~av  220 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFSV  220 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCceE
Confidence            3  235667778888999999999999 999999999998876555443

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.76  E-value=4.4e-17  Score=138.55  Aligned_cols=119  Identities=18%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCC------------c----cccccceeeeEEEEEECC-----eEEEEEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYD--KFDT------------T----YQATIGIDFLSKTMYLED-----RTVRLQL   62 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~--~~~~------------~----~~~~~~~~~~~~~~~~~~-----~~~~~~i   62 (207)
                      ..+..+|+|+|+.++|||||+++|+..  .+..            .    ..+..++......+.+.+     ..+.+.|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            345689999999999999999999742  1110            0    012222322223333332     3378999


Q ss_pred             EecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      |||||+.+|...+..+++.+|++|+|+|+++.........|.. +..   .++|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence            9999999999999999999999999999998655555444432 222   2689999999999854

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.75  E-value=4e-19  Score=140.64  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=102.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccccccee---ee---------------------------------------
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGID---FL---------------------------------------   47 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~---~~---------------------------------------   47 (207)
                      .+|+|+|++|||||||+++|++..+.+......+..   ..                                       
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            599999999999999999999987632221111100   00                                       


Q ss_pred             ------------EEEEEECCeEEEEEEEecCChhhh-------------ccccccccccCCEEEEEEECCChHHHHHHHH
Q 028546           48 ------------SKTMYLEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDVANRQSFLNTSR  102 (207)
Q Consensus        48 ------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~  102 (207)
                                  ...+... ....+.+|||||..++             ......++.++|++|+|+|.++.....  ..
T Consensus       115 ~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~  191 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD  191 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred             cCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence                        0000111 1136899999997765             456677899999999999876432221  23


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546          103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus       103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |+..+........|+++|+||+|+.+......+........++.+|+.+++.++.++++.+..+.
T Consensus       192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            44444444445679999999999987655544444444445677899999999888876655443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=4.6e-18  Score=136.12  Aligned_cols=159  Identities=16%  Similarity=0.229  Sum_probs=81.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc--------cccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------   73 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   73 (207)
                      .++|+|+|++|+|||||+++|.+..+.....        ++.........+...+....+++||++|...+..       
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            4889999999999999999999887632111        1111111111222233345799999999764311       


Q ss_pred             ------------------ccccccccCCEEEEEEECCCh-HHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546           74 ------------------LIPSYIRDSSVAVIVYDVANR-QSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS  133 (207)
Q Consensus        74 ------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (207)
                                        ....++.++++.+++|..... .++..+ ..|+..+.    ..+|+|+|+||+|+....++.
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~  186 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQ  186 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHH
Confidence                              112344455544444433321 233333 24555553    268999999999987665544


Q ss_pred             H--HHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          134 I--EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       134 ~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      .  ..+...+...+++++++|+.++.++.++|..|.+.++
T Consensus       187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            3  5667777788999999999999999998888877654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.74  E-value=2e-18  Score=133.30  Aligned_cols=135  Identities=18%  Similarity=0.162  Sum_probs=109.5

Q ss_pred             HHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChH-HHHHHH
Q 028546           24 SIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTS  101 (207)
Q Consensus        24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~  101 (207)
                      +|+.++..+.|. ..+.++.+..+. ..+..++   .+.+||+  +++++.++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888888 777888884443 3322222   7899999  8899999999999999999999999887 788899


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCCCChHHHHHHHHHH
Q 028546          102 RWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG--VMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       102 ~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .|+..+..   .++|+++|+||+|+.+++.+  ++...++..++  ++++++||++|.|++++|.++...
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence            99987765   26899999999999655432  44566777777  899999999999999999987654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.73  E-value=1.4e-17  Score=131.26  Aligned_cols=123  Identities=16%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             eEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCCC
Q 028546           47 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----------RQSFLNTSRWIEEVRTE-RGGDV  115 (207)
Q Consensus        47 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~  115 (207)
                      ....+.+++  +.+.+||++|++.++..|..++++++++|||+|+++          ..++.....|+..+... ...++
T Consensus       192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~  269 (362)
T 1zcb_A          192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV  269 (362)
T ss_dssp             EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence            345556665  789999999999999999999999999999999998          67899998898887654 23579


Q ss_pred             eEEEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEEecCCCCChHHHHHHHHH
Q 028546          116 IIVLVGNKTDLVDKR----------------QVSIEEGDGKAK-----------EFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus       116 p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++|++||+|+.+++                ....+++..++.           ..++.+++|||+++.|++++|+++.+
T Consensus       270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            999999999986432                255666665541           23567899999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       350 ~i~  352 (362)
T 1zcb_A          350 TIL  352 (362)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.72  E-value=4.7e-17  Score=129.27  Aligned_cols=124  Identities=14%  Similarity=0.176  Sum_probs=98.5

Q ss_pred             eeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCC----------hHHHHHHHHHHHHHHHh-cCCC
Q 028546           46 FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVAN----------RQSFLNTSRWIEEVRTE-RGGD  114 (207)
Q Consensus        46 ~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~-~~~~  114 (207)
                      +....+.+++  +.+.+||++|++.++..|..++++++++|||||+++          ..+|+....|+..+... ...+
T Consensus       207 i~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~  284 (402)
T 1azs_C          207 IFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT  284 (402)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS
T ss_pred             eEEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC
Confidence            3345566665  789999999999999999999999999999999998          88999999999988764 3357


Q ss_pred             CeEEEEEeCCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------hCCeEEEE
Q 028546          115 VIIVLVGNKTDLVDKRQ---V---------------------------SIEEGDGKA-----KE--------FGVMFIET  151 (207)
Q Consensus       115 ~p~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~  151 (207)
                      +|++||+||.|+.+++.   +                           ..+.+..++     ..        ..+.+++|
T Consensus       285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T  364 (402)
T 1azs_C          285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  364 (402)
T ss_dssp             CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred             CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence            99999999999854322   1                           123444442     22        23567899


Q ss_pred             ecCCCCChHHHHHHHHHHcC
Q 028546          152 SAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       152 s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ||+++.||+++|.++.+.+.
T Consensus       365 SA~d~~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          365 CAVDTENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             CTTCHHHHHHHHHHHHHHHH
T ss_pred             EeecCcCHHHHHHHHHHHHH
Confidence            99999999999999988775

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.71  E-value=3.3e-16  Score=129.70  Aligned_cols=114  Identities=15%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------------------CC----CCccccccceeeeEEEEEECCeEEEEEEEec
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KF----DTTYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (207)
                      +.-+|+|+|+.++|||||..+|+..                  .+    ..+..+..++.-....+.+.+  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            4578999999999999999999611                  11    223344555555555666666  68999999


Q ss_pred             CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ||+.+|.......++-+|++|+|+|+..+-..++..-|.+.. .+   ++|.++++||+|..
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~---~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR---ATPVMTFVNKMDRE  165 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT---TCCEEEEEECTTSC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh---CCceEEEEecccch
Confidence            999999999999999999999999999765555555554433 33   69999999999974

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.69  E-value=4.6e-17  Score=120.13  Aligned_cols=155  Identities=16%  Similarity=0.139  Sum_probs=94.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccccce--------eeeEEEEEE----------------CCeEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY------QATIGI--------DFLSKTMYL----------------EDRTV   58 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~~   58 (207)
                      ..+|+++|.+|+|||||+++|.........      .+..+.        ......+..                ....+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            468999999999999999999865221110      010000        000001111                01124


Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD  138 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  138 (207)
                      .+.+|||+|+.....   .+....+.+++|+|+++...  ....+...+      ..|+++|+||+|+.+......+...
T Consensus       110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF------RVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH------HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh------hcCCEEEEecccCCcchhhHHHHHH
Confidence            788999998411111   11135788999999976432  111111111      3678999999998654334556666


Q ss_pred             HHHHHh--CCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546          139 GKAKEF--GVMFIETSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       139 ~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      ..+...  +.+++++|+++|.|+++++++|.+.+....
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            666554  468999999999999999999999886553

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.69  E-value=4.9e-18  Score=133.98  Aligned_cols=159  Identities=18%  Similarity=0.223  Sum_probs=94.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC------cccccc----------------------cee-------------
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT------TYQATI----------------------GID-------------   45 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~------~~~~~~----------------------~~~-------------   45 (207)
                      ....+|+|+|.+++|||||+++|++..+.+      ++.++.                      +.+             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            345799999999999999999999988731      111220                      000             


Q ss_pred             --------eeEEEEEEC-CeEEEEEEEecCChh-------------hhccccccccccCC-EEEEEEECCChHHHHHHHH
Q 028546           46 --------FLSKTMYLE-DRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSS-VAVIVYDVANRQSFLNTSR  102 (207)
Q Consensus        46 --------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~  102 (207)
                              .....+.+. .....+.||||||..             .+..+...|+.+++ ++++|.|++...  ... .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~--~~~-~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--ANS-D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCG--GGC-H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCcc--chh-H
Confidence                    000001110 012479999999953             34456666776665 555566666422  211 1


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--HhC-CeEEEEecCCCCChHHHHHHHHH
Q 028546          103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK--EFG-VMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus       103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ++..+........|+++|+||+|+.+..............  ..+ .+++++||+++.|++++++++.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2222333334468999999999997554322221111000  112 25788999999999999999987

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.6e-15  Score=118.95  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhhhc-
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR-   72 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   72 (207)
                      .++|+++|.+|+|||||+|+|.+..+.....+.++++.....+.+.+.               ...+.+||+||..+.. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999988754444444454444444555442               1479999999976543 


Q ss_pred             ---cc---cccccccCCEEEEEEECCC
Q 028546           73 ---SL---IPSYIRDSSVAVIVYDVAN   93 (207)
Q Consensus        73 ---~~---~~~~~~~~d~~ilv~d~~~   93 (207)
                         .+   ...+++++|++++|+|+++
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence               12   2335789999999999985

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=4.9e-17  Score=128.35  Aligned_cols=104  Identities=13%  Similarity=0.102  Sum_probs=69.9

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--H
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--E  135 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~  135 (207)
                      +.+.||||||...   .....+..+|++|+|+|....+....+...   +     ...|+++|+||+|+........  .
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence            5799999999432   233345889999999999765444332211   1     1368899999999854322111  1


Q ss_pred             HHHHHHHH-------hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          136 EGDGKAKE-------FGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       136 ~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ........       ++.+++++|+++|.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            11111111       25789999999999999999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.63  E-value=2.4e-16  Score=130.65  Aligned_cols=123  Identities=20%  Similarity=0.219  Sum_probs=80.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CccccccceeeeEEE--------------------------------
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFD---TTYQATIGIDFLSKT--------------------------------   50 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------------------   50 (207)
                      ....++|+|+|.+|+|||||+|+|++..+.   ....++++.......                                
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            345689999999999999999999998863   222332211000000                                


Q ss_pred             ----EEECCe-EEEEEEEecCChhh-----------hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC
Q 028546           51 ----MYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD  114 (207)
Q Consensus        51 ----~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  114 (207)
                          ..+.+. ...+.||||||...           +...+..++..+|++|+|+|+++.........++..+..   ..
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence                000000 02589999999764           344556678899999999999874334444555555432   25


Q ss_pred             CeEEEEEeCCCCCCCCC
Q 028546          115 VIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus       115 ~p~ivv~nK~D~~~~~~  131 (207)
                      .|+++|+||+|+.+..+
T Consensus       219 ~pvilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQQ  235 (550)
T ss_dssp             GGEEEEEECGGGSCHHH
T ss_pred             CCEEEEEECCCccCHHH
Confidence            78999999999875433

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.62  E-value=4.2e-17  Score=120.79  Aligned_cols=154  Identities=18%  Similarity=0.212  Sum_probs=92.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeee------------EEEEEEC-Ce------------------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFL------------SKTMYLE-DR------------------   56 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   56 (207)
                      +.++|+|+|.+|+|||||+++|....+...+.++...++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999977554333333222221            1111111 10                  


Q ss_pred             -EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028546           57 -TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIE  135 (207)
Q Consensus        57 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (207)
                       ...+.++|++|.-...   ..+-...+.++.++|.........  .....+      ..|.++|+||+|+.+..+...+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM------KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence             1145555665521100   011123445667777532111111  001111      3678999999998655445566


Q ss_pred             HHHHHHHHh--CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          136 EGDGKAKEF--GVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       136 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      .....+..+  +++++++|+++|.|++++|++|.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            666666654  5789999999999999999999987643

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.62  E-value=6.5e-16  Score=133.73  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=84.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------------CCCC----ccccccceeeeEEEEEE--------------CCeE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD------------KFDT----TYQATIGIDFLSKTMYL--------------EDRT   57 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~------------~~~~----~~~~~~~~~~~~~~~~~--------------~~~~   57 (207)
                      ...+|+|+|+.++|||||+++|+..            .+..    +..+..++......+.+              ++..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            4579999999999999999999854            1110    11122222222222222              3446


Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      +.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|.....    .++|+++++||+|+.
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence            899999999999999999999999999999999998877777665554432    258999999999975

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.61  E-value=2.2e-14  Score=122.34  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=81.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--------------CC----CCccccccceeeeEEEEEECC-----eEEEEEEEecC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD--------------KF----DTTYQATIGIDFLSKTMYLED-----RTVRLQLWDTA   66 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~   66 (207)
                      -+|+|+|+.++|||||..+|+..              .+    ..+..+..++.-....+.+.+     ..+.++++|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            58999999999999999999711              11    122334444444444454432     35789999999


Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      |+.+|.......++-+|++|+|+|+..+-..++..-|.+....    ++|.++++||+|..
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSST
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEcccccc
Confidence            9999999999999999999999999976555555555555444    58999999999964

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.59  E-value=4.7e-16  Score=131.09  Aligned_cols=112  Identities=15%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--C------C------CC----CccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY--D------K------FD----TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~--~------~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      .||+|+|+.++|||||..+|+.  +      .      +.    .+..++.++......+.+.+  +.++++||||+.+|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence            4799999999999999999971  1      1      11    11112333333333333444  68999999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      .......++-+|++|+|+|+..+-..++..-|.+... .   ++|.++++||+|..
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~-~---~lp~i~~INKmDr~  132 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK-M---GIPTIFFINKIDQN  132 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH-H---TCSCEECCEECCSS
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH-c---CCCeEEEEeccccc
Confidence            9999999999999999999997544444444444333 3   58889999999964

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.59  E-value=4.8e-16  Score=122.26  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=62.7

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG  137 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (207)
                      +.+.++||+|....   ...+...+|++++|+|++.+.....+..   .+     ...|.++|+||+|+.+..... ...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HHH
Confidence            47899999995321   2334678999999999986543222211   11     135789999999985321110 011


Q ss_pred             HHHHH----------HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          138 DGKAK----------EFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       138 ~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..+..          .++.+++++|+++|.|+++++++|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            11111          12467899999999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.59  E-value=1.6e-14  Score=113.91  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=57.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC-------------------eEEEEEEEecCChhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER   70 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   70 (207)
                      ++|+++|.+|+|||||++++.+........+..+++.......+.+                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999997653322233333333333333321                   224799999999765


Q ss_pred             hcc-------ccccccccCCEEEEEEECCC
Q 028546           71 FRS-------LIPSYIRDSSVAVIVYDVAN   93 (207)
Q Consensus        71 ~~~-------~~~~~~~~~d~~ilv~d~~~   93 (207)
                      ..+       .....++++|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            432       12235789999999999985

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.57  E-value=6.4e-14  Score=110.51  Aligned_cols=153  Identities=13%  Similarity=0.135  Sum_probs=101.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------cccccccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRD   81 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~   81 (207)
                      ..+|+++|.|++|||||+|+|++........+.++.+.....+.+.+  .++.++|+||.-.-..       .....++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            36899999999999999999999887777778899999888888888  5789999999543211       12334688


Q ss_pred             CCEEEEEEECCChHHH-HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--------CCCCCHHHHHHHHHHhCCeEEEEe
Q 028546           82 SSVAVIVYDVANRQSF-LNTSRWIEEVRTERGGDVIIVLVGNKTDLVD--------KRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      +|++++|+|++++..- +.+...+..+.... ...|.++++||.|...        ......++.......+.+..-++-
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~  228 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA  228 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence            9999999999986432 22332222222112 3567889999999632        233455666655555554222222


Q ss_pred             cCCCCChHHHHH
Q 028546          153 AKAGFNIKPLFR  164 (207)
Q Consensus       153 ~~~~~~i~~~~~  164 (207)
                      -..+...+++.+
T Consensus       229 ~~~nv~eddl~d  240 (376)
T 4a9a_A          229 FRCDATVDDLID  240 (376)
T ss_dssp             ECSCCCHHHHHH
T ss_pred             ecccCCHHHHHH
Confidence            223334444443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=6.1e-15  Score=125.15  Aligned_cols=158  Identities=18%  Similarity=0.209  Sum_probs=97.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccc-------------------------------------------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIG-------------------------------------------   43 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~-------------------------------------------   43 (207)
                      ...+|+|+|..++|||||+|+|++..+ +......+.                                           
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            457999999999999999999999876 222111110                                           


Q ss_pred             -------eeeeEEEEEECCeEEEEEEEecCChhh-------------hcccccccc-ccCCEEEEEEECCChHHHHHHHH
Q 028546           44 -------IDFLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVIVYDVANRQSFLNTSR  102 (207)
Q Consensus        44 -------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~  102 (207)
                             .+.....+...+. ..+.|+||||...             +..+...|+ ..+|++++|+|++....-.....
T Consensus       130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                   0001111111221 2588999999543             222334444 57899999999986432222222


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH--HhC-CeEEEEecCCCCChHHHHHHHHHH
Q 028546          103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK--EFG-VMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      ++..+.   ....|+++|+||+|+.+..............  ..+ .+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            333332   3368999999999997655443221110000  012 257889999999999999999873

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.52  E-value=5.2e-15  Score=116.11  Aligned_cols=103  Identities=14%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--H
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--E  135 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~  135 (207)
                      +.+.||||||......   .....+|++++|+|++....+..+..   ...     ..|.++|+||+|+.+......  .
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM-----EVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH-----HHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh-----cccCEEEEECCCCCChHHHHHHHH
Confidence            5799999999654332   24589999999999976543222211   111     357899999999854322111  1


Q ss_pred             HHHHHHHHh-------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          136 EGDGKAKEF-------GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       136 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ........+       ..+++++|+++|.|+++++++|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            112111121       457899999999999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.51  E-value=6e-14  Score=106.00  Aligned_cols=111  Identities=16%  Similarity=0.025  Sum_probs=68.6

Q ss_pred             EEEEEEecCChhhhccccc------cccccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      +.+.||||||.........      ..+.. +++|+++|+..   ...+.....+.....  ...+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence            5799999999876543321      23455 89999998753   222222211111111  112578999999999865


Q ss_pred             CCCC--------CHHHHH-H-----------------HHHHhC--CeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          129 KRQV--------SIEEGD-G-----------------KAKEFG--VMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       129 ~~~~--------~~~~~~-~-----------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..+.        ...... .                 .+..++  .+++++|++++.|+++++++|.+.+.
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            4321        000000 0                 123333  47999999999999999999998765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.46  E-value=1.1e-13  Score=108.28  Aligned_cols=103  Identities=11%  Similarity=0.098  Sum_probs=63.7

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG  137 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (207)
                      +.+.|+||+|.....   ......+|.+++++|....+..+.+...   +.     ..+.++++||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence            579999999964321   2234789999999998754332211111   11     134577789999754322211112


Q ss_pred             HHHHHH----------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          138 DGKAKE----------FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       138 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..+...          ++.+++.+|++++.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222221          2467899999999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.45  E-value=2.5e-13  Score=104.79  Aligned_cols=99  Identities=21%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             hhhhccccccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHhC
Q 028546           68 QERFRSLIPSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEFG  145 (207)
Q Consensus        68 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  145 (207)
                      ++++..+.+.++.++|++++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.++.++. .+.........+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6677888888999999999999999886 88888899987765   268999999999997554222 334455566678


Q ss_pred             CeEEEEecCCCCChHHHHHHHHHH
Q 028546          146 VMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       146 ~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      ++++++||++|.|++++++.+...
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             CeEEEEECCCCCCHHHHHhhccCc
Confidence            999999999999999999887643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.38  E-value=1.1e-11  Score=98.30  Aligned_cols=85  Identities=18%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhhh-
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF-   71 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~-   71 (207)
                      ..++.++|++|+|||||+|+|.+... .....++.+++.....+.+.+.               ...+.+||+||.... 
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            47899999999999999999999877 5566677777777777777651               136899999995432 


Q ss_pred             ------ccccccccccCCEEEEEEECCC
Q 028546           72 ------RSLIPSYIRDSSVAVIVYDVAN   93 (207)
Q Consensus        72 ------~~~~~~~~~~~d~~ilv~d~~~   93 (207)
                            .......++.+|++++|+|+.+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  2233445689999999999863

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.37  E-value=4.5e-13  Score=106.11  Aligned_cols=87  Identities=16%  Similarity=0.103  Sum_probs=53.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhhhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR   72 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~   72 (207)
                      ..++|+++|.+|+|||||+++|.+..+.....++.+++.....+.+.+.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            3489999999999999999999998776556667776666666665542               1259999999977644


Q ss_pred             c-------ccccccccCCEEEEEEECCCh
Q 028546           73 S-------LIPSYIRDSSVAVIVYDVANR   94 (207)
Q Consensus        73 ~-------~~~~~~~~~d~~ilv~d~~~~   94 (207)
                      +       .+..+++++|++++|+|+++.
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            3       345678999999999999853

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.37  E-value=6e-13  Score=95.72  Aligned_cols=106  Identities=6%  Similarity=-0.090  Sum_probs=68.9

Q ss_pred             CChhhhccccccccccCCEEEEEEECCChHHHHHHHHHH---HHHH-Hhc-CCCCeEEEEEeCC-CCCCCCCCCHHHHHH
Q 028546           66 AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWI---EEVR-TER-GGDVIIVLVGNKT-DLVDKRQVSIEEGDG  139 (207)
Q Consensus        66 ~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~i~-~~~-~~~~p~ivv~nK~-D~~~~~~~~~~~~~~  139 (207)
                      +|+..++..|..|+.++|++|||+|.+|.+.++ .+..+   ..+. ... ..++|++|++||. |+.  ......++..
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence            478899999999999999999999999865433 33333   2222 222 2578999999985 663  3344444433


Q ss_pred             HHHH----hCCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546          140 KAKE----FGVMFIETSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       140 ~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      ....    ....+..|||.+|+|+.+.++||.+.+...+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            3221    2346889999999999999999998876443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.26  E-value=1.2e-11  Score=93.25  Aligned_cols=108  Identities=6%  Similarity=-0.070  Sum_probs=73.5

Q ss_pred             cCChhhhccccccccccCCEEEEEEECCChHHHH---HHHHHHHHHHHh-cCCCCeEEEEEeC-CCCCCCCCCCHHHHHH
Q 028546           65 TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL---NTSRWIEEVRTE-RGGDVIIVLVGNK-TDLVDKRQVSIEEGDG  139 (207)
Q Consensus        65 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~~  139 (207)
                      .+|+...+..|..|+.++|++|||+|.+|.+.++   ++.++...+... ...++|++|++|| .|+..  .....++..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            4578889999999999999999999999876443   222222223222 2347999999996 57743  344444433


Q ss_pred             HHHH----hCCeEEEEecCCCCChHHHHHHHHHHcCCCc
Q 028546          140 KAKE----FGVMFIETSAKAGFNIKPLFRKIAAALPGME  174 (207)
Q Consensus       140 ~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~~~~~~  174 (207)
                      ...-    ....+..|||.+|+|+.+.++||.+.+...+
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~  310 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  310 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred             HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence            2221    2345889999999999999999999987544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=3.1e-10  Score=89.76  Aligned_cols=97  Identities=24%  Similarity=0.342  Sum_probs=73.6

Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH----HHHHH
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG----DGKAK  142 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~  142 (207)
                      ..++|...+..+.+.++++++|+|++++.     ..|...+.+... +.|+++|+||+|+.+.. ...+..    ...+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            35788999999999999999999999753     345555555443 68999999999996543 222333    33355


Q ss_pred             HhCC---eEEEEecCCCCChHHHHHHHHHHc
Q 028546          143 EFGV---MFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       143 ~~~~---~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      ..++   +++.+||++|.|++++++.|.+..
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6677   799999999999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.03  E-value=4.4e-10  Score=89.86  Aligned_cols=139  Identities=14%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc----ccccceeeeEEEEEECCeEEEEEEEecCChhhhc-------------
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------------   72 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------   72 (207)
                      ++++|+|++|+|||||++.+.+..+....    .+..........+...+....++++|++|.....             
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            57999999999999999999987543211    1111222111122222323478999999843210             


Q ss_pred             -ccc----cc---------ccccC--CE-EEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--
Q 028546           73 -SLI----PS---------YIRDS--SV-AVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--  133 (207)
Q Consensus        73 -~~~----~~---------~~~~~--d~-~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--  133 (207)
                       ..+    ..         .+..+  |+ ++|+.|...+-+-.. ...   +.... .++|+|+|+||+|...+.++.  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-iei---lk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVT---MKKLD-SKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHH---HHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHH---HHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence             011    11         11222  33 556666653322222 122   22222 478999999999986554421  


Q ss_pred             HHHHHHHHHHhCCeEEEEec
Q 028546          134 IEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~  153 (207)
                      ...+.......++.+|++|.
T Consensus       198 ~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHcCCcEEecCC
Confidence            12222223345677777774

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=2.5e-11  Score=96.10  Aligned_cols=141  Identities=19%  Similarity=0.234  Sum_probs=83.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC------CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------c
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD------KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------I   75 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~   75 (207)
                      ..+|+++|.+|+|||||+|++++.      .......+.++.+.  ..+.+..   .+.++||||.......       .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999976      33333344444433  2333443   3789999995432211       1


Q ss_pred             cccc---ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546           76 PSYI---RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus        76 ~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      ...+   ...+.++++++....-.+..+..    +......+.|+++++||.|.....+... ....+.+..+..+.+.+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~~-~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLEK-ADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGGG-HHHHHHHHBTTTBCSSC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHHH-HHHHHHHhcCCccCCCC
Confidence            1112   67899999999852110111110    1112234689999999999876554432 33445556666666666


Q ss_pred             cCCCCCh
Q 028546          153 AKAGFNI  159 (207)
Q Consensus       153 ~~~~~~i  159 (207)
                      +.+..++
T Consensus       312 ~~~~~~~  318 (369)
T 3ec1_A          312 KRYAAEF  318 (369)
T ss_dssp             GGGTTTC
T ss_pred             chhhhhc
Confidence            6554443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.00  E-value=1.8e-10  Score=94.21  Aligned_cols=151  Identities=19%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh------cCCCC----Cccccc-----------cceeeeEEEEE-------------E
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM------YDKFD----TTYQAT-----------IGIDFLSKTMY-------------L   53 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~------~~~~~----~~~~~~-----------~~~~~~~~~~~-------------~   53 (207)
                      +...|+++|++|+||||++++|.      +.++.    +.+.+.           .++++......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999997      33320    000110           01221111000             0


Q ss_pred             CCeEEEEEEEecCChhhhcc-ccc---cc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEEeCCCC
Q 028546           54 EDRTVRLQLWDTAGQERFRS-LIP---SY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII-VLVGNKTDL  126 (207)
Q Consensus        54 ~~~~~~~~i~D~~G~~~~~~-~~~---~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D~  126 (207)
                      ....+.+.|+||||...... .+.   .+  +..+|.+++|+|+........   ....+...    .|+ ++|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~~----~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKDK----VDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHHH----HCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHhh----cCceEEEEeCCcc
Confidence            00235799999999653211 111   11  227899999999986533212   22223222    454 899999997


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeE------------------EEEecCCCCC-hHHHHHHHHHH
Q 028546          127 VDKRQVSIEEGDGKAKEFGVMF------------------IETSAKAGFN-IKPLFRKIAAA  169 (207)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~l~~~  169 (207)
                      .....    .........+.++                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            53221    1222333444443                  3468889999 99999999876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.98  E-value=6.4e-10  Score=84.31  Aligned_cols=137  Identities=14%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc--------cc-ccceeeeEEEEEECCeEEEEEEEecCChhhhcc------
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY--------QA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------   73 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------   73 (207)
                      .++++++|+.|+|||||++.+.+...+...        .+ ..............+....++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            589999999999999999999865432110        00 000011111111112223689999998432100      


Q ss_pred             cc----------------------ccccccCCEEEEEEECCC-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           74 LI----------------------PSYIRDSSVAVIVYDVAN-RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        74 ~~----------------------~~~~~~~d~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      ..                      ...+..+++.++++|... +-.-.. ...+..+.   .. +++++|++|+|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence            00                      111235788999999752 211111 22333333   22 8899999999986544


Q ss_pred             CCC--HHHHHHHHHHhCCeEEE
Q 028546          131 QVS--IEEGDGKAKEFGVMFIE  150 (207)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~~  150 (207)
                      +..  ...+.......++.+|+
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHcCccccC
Confidence            322  22334445556777664

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.93  E-value=6.1e-10  Score=88.13  Aligned_cols=98  Identities=22%  Similarity=0.282  Sum_probs=72.0

Q ss_pred             ChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH----HHHH
Q 028546           67 GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD----GKAK  142 (207)
Q Consensus        67 G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~  142 (207)
                      .+++|++.+..++..++++++|+|++++.+     .|...+..... +.|+++|+||+|+.+.. ...+...    ....
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            477899999999999999999999998653     23333433333 68999999999997543 2223333    2345


Q ss_pred             HhCC---eEEEEecCCCCChHHHHHHHHHHcC
Q 028546          143 EFGV---MFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       143 ~~~~---~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..++   +++.+||++|.|++++++.+.+...
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            5566   7899999999999999999987653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.89  E-value=4.4e-08  Score=78.26  Aligned_cols=163  Identities=14%  Similarity=0.149  Sum_probs=87.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccccceeee-EEEEEECCeEEEEEEEecCChhhhccccccc-----ccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTY-QATIGIDFL-SKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IRD   81 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~-----~~~   81 (207)
                      ...++++|++|+|||||++.+.+...+..- ....+.+.. ...+.-......++++|++|..........+     +..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            357999999999999999999985432111 111111100 0111111111158999999854321111111     334


Q ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC--C-----CCCCCHHHH----HHHH----HHhC-
Q 028546           82 SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV--D-----KRQVSIEEG----DGKA----KEFG-  145 (207)
Q Consensus        82 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~--~-----~~~~~~~~~----~~~~----~~~~-  145 (207)
                      .+.+++ ++...... ..+ .+...+.. .  +.|+++|.||.|+.  +     -........    ..+.    ...+ 
T Consensus       149 ~~~~~~-lS~G~~~k-qrv-~la~aL~~-~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFKK-NDI-DIAKAISM-M--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCCH-HHH-HHHHHHHH-T--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCccH-HHH-HHHHHHHh-c--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455555 77653111 111 11122222 1  47999999999963  1     111122222    2222    1222 


Q ss_pred             --CeEEEEec--CCCCChHHHHHHHHHHcCCCccCc
Q 028546          146 --VMFIETSA--KAGFNIKPLFRKIAAALPGMETLS  177 (207)
Q Consensus       146 --~~~~~~s~--~~~~~i~~~~~~l~~~~~~~~~~~  177 (207)
                        ..++.+|+  .++.|++++.+.+.+.+.+.....
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~  258 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN  258 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence              36788999  566679999999999987765443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.88  E-value=8.8e-11  Score=92.88  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC------C-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc------
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF------D-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------   75 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------   75 (207)
                      ..+|+++|.+|+|||||+|++++...      . ....+.++.  ....+.+..   .+.++||||........      
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL--DLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec--ceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHH
Confidence            36899999999999999999987531      1 122233332  223333443   27899999964322111      


Q ss_pred             --ccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q 028546           76 --PSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus        76 --~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (207)
                        ..+  ....+.++++++....-.+..+..    +........|+++++||.|.....+. ......+.+..+..+.+.
T Consensus       235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred             HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence              111  356788999998842110111100    11122346899999999998755443 223334444556544444


Q ss_pred             ec
Q 028546          152 SA  153 (207)
Q Consensus       152 s~  153 (207)
                      ++
T Consensus       310 ~~  311 (368)
T 3h2y_A          310 TP  311 (368)
T ss_dssp             CH
T ss_pred             ch
Confidence            43

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=1.3e-09  Score=83.19  Aligned_cols=101  Identities=12%  Similarity=0.091  Sum_probs=68.9

Q ss_pred             EEecCChh-hhccccccccccCCEEEEEEECCChHHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028546           62 LWDTAGQE-RFRSLIPSYIRDSSVAVIVYDVANRQSFLN--TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGD  138 (207)
Q Consensus        62 i~D~~G~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  138 (207)
                      +-..||+. .....+...+.++|++++|+|+.++.+...  +.+++        .++|.++|+||+|+.+...  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            34568865 445566777899999999999998766542  33332        3689999999999965321  11222


Q ss_pred             HHHHHhCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          139 GKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       139 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      .+....+++++.+|+.++.|++++++.+.+.+.+
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            2333457899999999999999999988887653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.57  E-value=5.9e-08  Score=73.92  Aligned_cols=57  Identities=23%  Similarity=0.313  Sum_probs=35.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCeEEEEEEEecCChh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   69 (207)
                      ..++++++|.+|+|||||+|++.+... .....+..+.+..  .+....   .+.++||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            458999999999999999999998764 2333344443332  233333   58899999954

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.53  E-value=3.6e-07  Score=73.47  Aligned_cols=86  Identities=17%  Similarity=0.084  Sum_probs=51.4

Q ss_pred             EEEEEEecCChhhhccc----cc--cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSL----IP--SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.|+||+|.......    ..  .....+|.++||+|+........   ....+...   -.+..||+||+|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence            67999999994332111    11  11336899999999986433222   22333332   2346799999997322  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEec
Q 028546          132 VSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                        ...+.......+.++.+++.
T Consensus       255 --gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc
Confidence              23344455567888877775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.50  E-value=9e-08  Score=77.07  Aligned_cols=83  Identities=16%  Similarity=0.046  Sum_probs=47.3

Q ss_pred             EEEEEEecCChhhhcc----cc--ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCC-e-EEEEEeCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS----LI--PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDV-I-IVLVGNKTDLVDK  129 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~--~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~D~~~~  129 (207)
                      +.+.|+||||......    ..  ...+..+|.++||+|+....   ........+..    .. | ..+|+||+|....
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFKE----AVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHHT----TSCSCEEEEEECSSSCST
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHhh----cccCCeEEEEeCCCCccc
Confidence            5789999999543211    11  11123689999999997543   22222222221    24 5 8999999997321


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEE
Q 028546          130 RQVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~  151 (207)
                          ...+.......+.++.++
T Consensus       254 ----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEE
T ss_pred             ----hHHHHHHHHHHCCCEEEe
Confidence                122334555666666554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.48  E-value=5.1e-08  Score=73.50  Aligned_cols=56  Identities=21%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      ++++++|.+|+|||||+|++.+..... ...+..+...  ..+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence            599999999999999999999877632 2223332222  2223332   689999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.40  E-value=4.8e-08  Score=73.65  Aligned_cols=92  Identities=16%  Similarity=0.055  Sum_probs=61.1

Q ss_pred             CChhh-hccccccccccCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028546           66 AGQER-FRSLIPSYIRDSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE  143 (207)
Q Consensus        66 ~G~~~-~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  143 (207)
                      ||+.. ....+...+.++|++++|+|+.++.+.... ..++         ++|.++|+||+|+.+...  .+........
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~~~   73 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVDFS---------RKETIILLNKVDIADEKT--TKKWVEFFKK   73 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSCCT---------TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHHhc---------CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence            55432 233456677899999999999987655431 1111         589999999999975421  1222233344


Q ss_pred             hCCeEEEEecCCCCChHHHHHHHHHH
Q 028546          144 FGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus       144 ~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      .++++ .+|+.++.|++++++.+...
T Consensus        74 ~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           74 QGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            57888 99999999999988877654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.30  E-value=5.2e-07  Score=75.13  Aligned_cols=63  Identities=14%  Similarity=0.053  Sum_probs=38.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccc--cccceeeeEEEEEE-CCeEEEEEEEecCChhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQ--ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQER   70 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   70 (207)
                      +.+.|+|+|.+++|||||+|+|++....- ...  ...+..+..+.... ......+.++||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            45889999999999999999999876421 111  11111111111111 11224789999999654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.28  E-value=2.1e-07  Score=74.73  Aligned_cols=90  Identities=14%  Similarity=0.087  Sum_probs=54.4

Q ss_pred             EEEEEEecCChhh--hcc----cccc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           58 VRLQLWDTAGQER--FRS----LIPS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        58 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      +.+.++||||...  ...    ....  .....+.++||+|+........   ....+....   .+..||+||.|..  
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~--  251 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGT--  251 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGC--
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEeccccc--
Confidence            5788999999533  111    1111  1225699999999986433222   223333332   4578999999963  


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546          130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                        .....+.......+.|+.+++.  |+++
T Consensus       252 --a~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          252 --AKGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             --SCHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             --ccchHHHHHHHHHCCCEEEEEC--CCCh
Confidence              2234455556667899888775  5543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.27  E-value=3.3e-07  Score=70.46  Aligned_cols=91  Identities=19%  Similarity=0.238  Sum_probs=60.6

Q ss_pred             ccccccccccCCEEEEEEECCChHH-HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHhCCeE
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQS-FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV--SIEEGDGKAKEFGVMF  148 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  148 (207)
                      ..+.+..+.++|.+++|+|+.++.. ...+.+++.....   .++|.++|+||+|+.++.+.  ..+.........++++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3344556889999999999987543 3334444433322   25889999999999765321  1223333444568899


Q ss_pred             EEEecCCCCChHHHHHH
Q 028546          149 IETSAKAGFNIKPLFRK  165 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~  165 (207)
                      +.+|+.++.|+++++..
T Consensus       154 ~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EECCHHHHTTCTTTGGG
T ss_pred             EEEecCCCCCHHHHHhh
Confidence            99999999887766544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.21  E-value=4.2e-06  Score=65.60  Aligned_cols=85  Identities=22%  Similarity=0.260  Sum_probs=56.4

Q ss_pred             ccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCCeEEEEecCC
Q 028546           78 YIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS-IEEGDGKAKEFGVMFIETSAKA  155 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~  155 (207)
                      .+.++|.+++|.+.. |. +...+.+++......   ++|+++|+||+|+.++.... ...........+++++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            468999999887764 43 333455554444333   57889999999997653210 1112222335688999999999


Q ss_pred             CCChHHHHHHH
Q 028546          156 GFNIKPLFRKI  166 (207)
Q Consensus       156 ~~~i~~~~~~l  166 (207)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999887754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.18  E-value=2.8e-06  Score=65.10  Aligned_cols=90  Identities=14%  Similarity=0.076  Sum_probs=54.9

Q ss_pred             EEEEEEecCChhh--hcc-ccc-----cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028546           58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVD  128 (207)
Q Consensus        58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~  128 (207)
                      +.+.++||||...  ... ...     ..+..+|.+++|+|+....   ........+..    ..+ ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5799999999655  211 111     1245789999999997432   22222233332    244 788999999632


Q ss_pred             CCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546          129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                          ....+.......+.++.+++  .|++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChh
Confidence                23344556677788887776  455554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.17  E-value=5.2e-06  Score=69.78  Aligned_cols=25  Identities=28%  Similarity=0.453  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~   35 (207)
                      .++|+|+.|||||||++.+.+-..+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCC
Confidence            4999999999999999999987533

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.98  E-value=2.2e-05  Score=60.90  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=52.5

Q ss_pred             EEEEEecCChhhhcccc----cc--ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546           59 RLQLWDTAGQERFRSLI----PS--YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV  132 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~  132 (207)
                      .+.++|++|........    ..  ..-..|-.+++.|+....   .+......+....+   ..++++||.|.. .   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~---it~iilTKlD~~-a---  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK---IDGIILTKLDAD-A---  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC---CCEEEEECGGGC-S---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC---CCEEEEeCcCCc-c---
Confidence            46779999964322211    10  122478899999987542   33333444443322   347889999952 1   


Q ss_pred             CHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546          133 SIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      ....+.......+.++.+++  +|++++
T Consensus       283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          283 RGGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             CCHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             chhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            12334556677788888877  555543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.88  E-value=1.4e-05  Score=64.42  Aligned_cols=23  Identities=13%  Similarity=0.153  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .=|.|+|++++|||||+|+|++.
T Consensus        68 ~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           68 VAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHhhh
Confidence            45788899999999999999863

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.85  E-value=9.3e-07  Score=72.11  Aligned_cols=102  Identities=13%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChh--hhcccc--------c
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSLI--------P   76 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~--------~   76 (207)
                      ..++.|+++|.+||||||+.++|....... ..++.............+......+||..|..  +.+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999986432100 00111100000000001111234678888873  233333        4


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHh
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTE  110 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~  110 (207)
                      .++...++.++|+|.++. +.+....|+..+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            556677888999999985 455566666666554

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.50  E-value=5.7e-05  Score=53.39  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999988754

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.35  E-value=0.0001  Score=52.06  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      --++++|++|||||||++.+.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35889999999999999999764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.34  E-value=0.00076  Score=54.32  Aligned_cols=83  Identities=14%  Similarity=0.011  Sum_probs=45.7

Q ss_pred             EEEEEEecCChhhhccc-cc-----cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSL-IP-----SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKR  130 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~-~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~  130 (207)
                      +.+.|+||||....... ..     ..+..++.+++|+|+......   ......+...    .+ ..+|+||.|.... 
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~~----l~i~gvVlnK~D~~~~-  255 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNEA----LPLTGVVLTKVDGDAR-  255 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHHH----SCCCCEEEECTTSSSC-
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhcc----CCCeEEEEecCCCCcc-
Confidence            57999999995433211 11     123478999999999754322   2222333322    33 3578999996322 


Q ss_pred             CCCHHHHHHHHHHhCCeEEEE
Q 028546          131 QVSIEEGDGKAKEFGVMFIET  151 (207)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~  151 (207)
                      .   ..+.......+.++.++
T Consensus       256 ~---g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G---GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C---THHHHHHHHHCCCEEEE
T ss_pred             H---HHHHHHHHHHCCCeEEE
Confidence            1   12334455556654433

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.32  E-value=0.00011  Score=52.72  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.++|+|+.|||||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.29  E-value=0.00018  Score=50.95  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.|+++|++|||||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            56899999999999999999775

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.27  E-value=0.00015  Score=52.30  Aligned_cols=26  Identities=15%  Similarity=0.273  Sum_probs=21.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..+...|+++|+.|||||||++.+.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999998765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.26  E-value=0.00014  Score=50.86  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.24  E-value=0.00021  Score=51.23  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      +.++.--|+|+|++|+|||||++.|.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            3444557889999999999999999854

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.23  E-value=0.00024  Score=50.28  Aligned_cols=30  Identities=20%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++..++...|+++|++||||||+.+.|-..
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            345556678999999999999999987543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.22  E-value=0.00017  Score=51.73  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999998765

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.17  E-value=0.0002  Score=52.28  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      --++|+|+.|||||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999987653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.15  E-value=0.00021  Score=51.54  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            47899999999999999987653

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.13  E-value=0.00029  Score=50.55  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -..|+++|++|||||||++.+.+..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3578999999999999999987654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.12  E-value=0.00023  Score=51.84  Aligned_cols=24  Identities=33%  Similarity=0.647  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -.++|+|+.|||||||++.+.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358899999999999999988743

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.12  E-value=0.00035  Score=49.09  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++...|+++|++||||||+...|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            344679999999999999999875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.09  E-value=0.00031  Score=49.93  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|+||+||||+||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.08  E-value=0.00031  Score=51.40  Aligned_cols=28  Identities=25%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      |..+..+  ..|+|+|++||||||+.+.|.
T Consensus         1 m~~~~~~--~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            1 MGASARL--LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             ------C--CEEEEEECTTSSHHHHHHHHH
T ss_pred             CCccccC--cEEEEECCCCCCHHHHHHHHH
Confidence            4444433  679999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.07  E-value=0.00031  Score=51.89  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999888764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.06  E-value=0.00039  Score=50.17  Aligned_cols=25  Identities=12%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      +...|+|+|++|||||||++.+.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999987653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.05  E-value=0.00031  Score=50.78  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      --|+++|++|||||||++.|.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358889999999999999998653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.04  E-value=0.00037  Score=48.34  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 028546           10 YKLVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l   29 (207)
                      +-|+++|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.02  E-value=0.00058  Score=47.67  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -..|+++|++||||||+++.+.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.02  E-value=0.00038  Score=50.37  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999884

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.02  E-value=0.00036  Score=48.21  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999998765

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.00  E-value=0.00036  Score=51.13  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999888764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.00  E-value=0.00039  Score=48.37  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|+++|++|||||||.+.|-+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.99  E-value=0.00042  Score=50.20  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|+|++||||||+...|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999884

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.99  E-value=0.00045  Score=49.51  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.|+++|++|||||||++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.98  E-value=0.00045  Score=48.77  Aligned_cols=21  Identities=29%  Similarity=0.230  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+|.|++||||||+.+.|.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.98  E-value=0.0004  Score=54.39  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++++|++|+|||||+|.+.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999998654

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.98  E-value=0.00044  Score=50.28  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.98  E-value=0.00042  Score=49.84  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-|+|+|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            56889999999999999998653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.97  E-value=0.00052  Score=47.97  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.97  E-value=0.00043  Score=49.04  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++++|++|||||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.97  E-value=0.00045  Score=51.18  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.95  E-value=0.00045  Score=47.93  Aligned_cols=21  Identities=10%  Similarity=0.240  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998853

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.95  E-value=0.00046  Score=50.98  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988764

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.94  E-value=0.00047  Score=51.73  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.94  E-value=0.00047  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999988764

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.94  E-value=0.00068  Score=48.49  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ....+.|+|+|++||||||+.+.|.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3445789999999999999999875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.93  E-value=0.0007  Score=47.80  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...|++.|++||||||+...|.
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999998875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.92  E-value=0.00063  Score=47.53  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.92  E-value=0.00059  Score=48.28  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +...|++.|.+||||||+...|.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999998774

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.92  E-value=0.00052  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.91  E-value=0.00054  Score=50.77  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+|+|++|||||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999987

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.91  E-value=0.00051  Score=51.39  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.91  E-value=0.00068  Score=48.68  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +...|+|.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346899999999999999998854

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.90  E-value=0.00054  Score=51.44  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.90  E-value=0.00055  Score=50.78  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.89  E-value=0.00059  Score=49.18  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.89  E-value=0.00075  Score=50.75  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|||||||++.+.+-..
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999887643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.89  E-value=0.00055  Score=50.68  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.89  E-value=0.00055  Score=50.92  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.89  E-value=0.00059  Score=49.30  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.|+++|+|||||+|....|.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999998775

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.88  E-value=0.00057  Score=50.88  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.88  E-value=0.00058  Score=51.06  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.86  E-value=0.00071  Score=48.26  Aligned_cols=31  Identities=13%  Similarity=0.107  Sum_probs=22.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      |..++ .+...|+|+|++||||||+.+.|...
T Consensus         1 ~~~~~-~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEA-KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             ------CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcc-cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            33444 34578999999999999999988654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.86  E-value=0.00061  Score=50.76  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999886

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.85  E-value=0.00055  Score=51.35  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =.++|+|+.|||||||++.+.+-
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHh
Confidence            35899999999999999988753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.85  E-value=0.0006  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5889999999999999988753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.84  E-value=0.00062  Score=51.02  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999988753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.83  E-value=0.00062  Score=52.19  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =.++|+|++|+|||||++.+.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            46899999999999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.83  E-value=0.0008  Score=51.53  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|++|+|||||++.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.82  E-value=0.00047  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999998875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.82  E-value=0.00068  Score=51.02  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999886

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.82  E-value=0.00066  Score=51.19  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++|+|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.82  E-value=0.00085  Score=47.23  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...|+++|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999885

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.81  E-value=0.00074  Score=48.19  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.81  E-value=0.0007  Score=51.29  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.81  E-value=0.00069  Score=50.55  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++++|+.|||||||++.+.+-..
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999887643

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.81  E-value=0.00082  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36789999999999999998853

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.80  E-value=0.0007  Score=48.48  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.80  E-value=0.00082  Score=48.92  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.80  E-value=0.00083  Score=48.03  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      -.|+++|++||||||+...|.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            478999999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.79  E-value=0.00071  Score=48.97  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999874

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.78  E-value=0.00074  Score=50.79  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988754

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.78  E-value=0.00091  Score=49.53  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.+.|+++|++||||||+...|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999885

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.78  E-value=0.0008  Score=47.51  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .|+|.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.77  E-value=0.00093  Score=49.48  Aligned_cols=25  Identities=16%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+..-|+|+|+.|||||||++.+.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446799999999999999998865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.77  E-value=0.00077  Score=48.27  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +.|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999998865

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.77  E-value=0.0006  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.++++|++|+|||||+..+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999988654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.76  E-value=0.00024  Score=54.56  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -.++++|++|+|||||+|.+.+...
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CEEEEECCCCCCHHHHHHHhccccc
Confidence            4689999999999999999987643

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.74  E-value=0.00083  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-++++|+.|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35788999999999999999864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.73  E-value=0.00085  Score=48.03  Aligned_cols=24  Identities=13%  Similarity=0.095  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ..-|+++|++|||||||.+.+.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356889999999999999987543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.71  E-value=0.00051  Score=50.35  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=14.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh-cC
Q 028546           11 KLVFLGDQSVGKTSIITRFM-YD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~-~~   32 (207)
                      -++++|+.|||||||++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998 54

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.71  E-value=0.0011  Score=48.22  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+.|+|+|++||||||+...|.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999998874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.70  E-value=0.0016  Score=46.54  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...|+|.|++||||||+...|.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578899999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.70  E-value=0.00077  Score=49.04  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|++|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.70  E-value=0.00089  Score=51.29  Aligned_cols=21  Identities=33%  Similarity=0.686  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      --++++|++|+|||||+|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999999998

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.69  E-value=0.0013  Score=50.03  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ....-|+++|++|||||||...|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999863

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.69  E-value=0.0011  Score=45.86  Aligned_cols=22  Identities=14%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ++|++.|.+||||||+.+.|-.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.69  E-value=0.0011  Score=47.57  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.0013  Score=49.39  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.67  E-value=0.00091  Score=51.50  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+..-|+|+|++|||||||++.+.+-
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhh
Confidence            34577899999999999999988754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.65  E-value=0.0013  Score=46.91  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ...|++.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            367999999999999999988654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.63  E-value=0.0013  Score=48.87  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++..+.+.|+|.|++||||||+.+.|.
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~   43 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIV   43 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHH
Confidence            344456789999999999999998774

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.63  E-value=0.0012  Score=48.17  Aligned_cols=21  Identities=14%  Similarity=0.240  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.63  E-value=0.0012  Score=46.39  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+++|++||||||+...|-
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999884

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.62  E-value=0.0047  Score=41.62  Aligned_cols=23  Identities=9%  Similarity=0.164  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ..|++.|++|+|||++...+-..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            56999999999999999877554

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.61  E-value=0.0012  Score=46.10  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      +|+++|++||||||+...|-
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            69999999999999998874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.60  E-value=0.0011  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988764

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.60  E-value=0.0042  Score=50.02  Aligned_cols=21  Identities=14%  Similarity=0.240  Sum_probs=17.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      .=|.|+|+.++|||+|+|.++
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCchhHHHHHHH
Confidence            345588999999999999665

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.59  E-value=0.00082  Score=51.57  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++|+|+.|||||||++.+.+-.
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999887653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.59  E-value=0.0011  Score=52.06  Aligned_cols=22  Identities=14%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++|+|+.|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998753

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.59  E-value=0.0018  Score=46.44  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ...|+|+|++|||||||.+.|.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            367899999999999999988754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.57  E-value=0.0017  Score=46.63  Aligned_cols=23  Identities=22%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998853

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.57  E-value=0.001  Score=52.33  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-+++|+|++|+|||||++.+.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999988765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.56  E-value=0.0015  Score=46.30  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...|+++|++||||||+...|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999998874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.55  E-value=0.0013  Score=47.73  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.54  E-value=0.0022  Score=46.64  Aligned_cols=24  Identities=33%  Similarity=0.500  Sum_probs=18.6

Q ss_pred             CCceeE-EEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKL-VFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i-~v~G~~~sGKStli~~l~   30 (207)
                      .++.|| +|+|+|||||+|....|.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHH
Confidence            445565 457999999999988775

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.52  E-value=0.0015  Score=46.07  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.51  E-value=0.00096  Score=46.78  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=15.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...|++.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.51  E-value=0.0024  Score=44.95  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +...|+++|.+||||||+...+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.49  E-value=0.00068  Score=47.48  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++|+|+.|||||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988765

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.49  E-value=0.0014  Score=50.87  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++|+|+.|||||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.48  E-value=0.0016  Score=51.19  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|||||||++.+.+-..
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHhcCCC
Confidence            368999999999999998887643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.46  E-value=0.001  Score=45.41  Aligned_cols=22  Identities=14%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.46  E-value=0.0015  Score=48.59  Aligned_cols=24  Identities=21%  Similarity=0.211  Sum_probs=20.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ....|+++|++||||||+...+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999998753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.44  E-value=0.0017  Score=47.09  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.|+|+|++||||||+...|.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999998874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.44  E-value=0.0015  Score=51.59  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =.++|+|+.|||||||++.+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.44  E-value=0.0015  Score=51.39  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -.++|+|+.|||||||++.+.+-.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            378999999999999999998753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.43  E-value=0.002  Score=50.54  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            368999999999999999887653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.42  E-value=0.002  Score=50.61  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+.+||+++|.+|||||||+.++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            446999999999999999998763

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.42  E-value=0.0022  Score=50.23  Aligned_cols=24  Identities=25%  Similarity=0.239  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            368999999999999999887643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.41  E-value=0.0018  Score=50.83  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            36899999999999999988654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.41  E-value=0.0022  Score=47.71  Aligned_cols=22  Identities=14%  Similarity=0.199  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...|+|+|++||||||+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999886

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.41  E-value=0.0016  Score=52.21  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++|+|+.|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4889999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.40  E-value=0.0021  Score=47.30  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.+.|++.|++||||||+.+.+-
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.0019  Score=50.76  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999988764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.39  E-value=0.0017  Score=48.95  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998763

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.39  E-value=0.0019  Score=51.00  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCC
Confidence            368999999999999999887643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.38  E-value=0.0024  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+.|+|.|.+||||||+.+.|-.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.38  E-value=0.0021  Score=44.60  Aligned_cols=21  Identities=14%  Similarity=0.327  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|++.|.+||||||+...|-
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998874

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.38  E-value=0.0019  Score=48.08  Aligned_cols=20  Identities=20%  Similarity=0.326  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -|+|+|++|||||||...|.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999999874

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.37  E-value=0.0029  Score=45.28  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...-|+|+|++|||||||++.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998753

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.37  E-value=0.00072  Score=48.71  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -|+|.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.37  E-value=0.0028  Score=48.25  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+..-|+|+|++|||||||.+.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            455789999999999999998764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.36  E-value=0.0025  Score=46.70  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+|+|.+||||||+...|.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999998874

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.36  E-value=0.0023  Score=44.66  Aligned_cols=23  Identities=17%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-+.++|++|||||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35788999999999999998753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.36  E-value=0.0021  Score=45.65  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|++.|++||||||+...|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.36  E-value=0.002  Score=50.82  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCC
Confidence            368999999999999999887643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.36  E-value=0.002  Score=48.13  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|+++|.+||||||+...|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.35  E-value=0.0028  Score=48.88  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...+-|.|+|++|||||||++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345779999999999999998874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.35  E-value=0.0021  Score=50.70  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999987654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.34  E-value=0.0021  Score=45.09  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.+|+|+.|+|||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.32  E-value=0.0022  Score=45.06  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+++|.+||||||+...|.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            359999999999999998774

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.31  E-value=0.0021  Score=47.66  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.30  E-value=0.0027  Score=48.75  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..-|+|+|+.|||||||++.+.+
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.29  E-value=0.0026  Score=44.44  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.+++.|++|+|||+|+..+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.29  E-value=0.0021  Score=52.88  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -.++|+|+.|||||||++.+.+--
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358999999999999999998754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.29  E-value=0.0021  Score=49.23  Aligned_cols=84  Identities=15%  Similarity=0.063  Sum_probs=46.5

Q ss_pred             EEEEEecCChhhhccc------------cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           59 RLQLWDTAGQERFRSL------------IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      .+.++|++|.......            -.......+.++++.|+.......   ..+..+....+   ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~~---~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAVG---LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHHC---CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHcC---CcEEEEECCcc
Confidence            4668899995321110            011234578889999987543322   22333333322   24788999985


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546          127 VDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      . .+.   ..+.......+.++.++.
T Consensus       260 ~-a~g---g~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 T-AKG---GVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             S-CCC---TTHHHHHHHHCCCEEEEE
T ss_pred             c-ccc---cHHHHHHHHHCCCeEEEe
Confidence            3 221   223445566788776665

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.27  E-value=0.0023  Score=46.50  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++++|++|+|||||+..+.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788999999999999998744

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.27  E-value=0.0032  Score=46.08  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      +-.-|+|.|+.|||||||++.+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3467899999999999999988764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.27  E-value=0.0032  Score=44.02  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -..|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.27  E-value=0.0028  Score=43.23  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999875

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.24  E-value=0.0017  Score=50.77  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999988764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.24  E-value=0.0017  Score=50.02  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~   33 (207)
                      ++|+|+.|||||||++.+.+..
T Consensus         7 ~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            7 TLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEecCCCCHHHHHHHHHhhc
Confidence            5677999999999999999653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.24  E-value=0.0024  Score=48.93  Aligned_cols=84  Identities=17%  Similarity=0.016  Sum_probs=44.7

Q ss_pred             EEEEEecCChhhhccc------------cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           59 RLQLWDTAGQERFRSL------------IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                      ...++|+.|.......            -..+....+-++++.|++..  .+... ....+....+   ..+++++|.|.
T Consensus       185 d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsg--lD~~~-~~~~~~~~~g---~t~iiiThlD~  258 (302)
T 3b9q_A          185 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTG--LNMLP-QAREFNEVVG---ITGLILTKLDG  258 (302)
T ss_dssp             SEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGG--GGGHH-HHHHHHHHTC---CCEEEEECCSS
T ss_pred             cchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCC--cCHHH-HHHHHHHhcC---CCEEEEeCCCC
Confidence            3567899985432110            01123456777889996532  22221 2233333222   24677899874


Q ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546          127 VDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      .    .........+...+.++..+.
T Consensus       259 ~----~~~g~~l~~~~~~~~pi~~i~  280 (302)
T 3b9q_A          259 S----ARGGCVVSVVEELGIPVKFIG  280 (302)
T ss_dssp             C----SCTHHHHHHHHHHCCCEEEEE
T ss_pred             C----CccChheehHHHHCCCEEEEe
Confidence            2    234455566777777776554

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.20  E-value=0.0032  Score=48.88  Aligned_cols=28  Identities=21%  Similarity=0.443  Sum_probs=19.2

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      |.+|. ++ .-|+|+|++|||||||...|.
T Consensus         1 ~~~m~-m~-~lI~I~GptgSGKTtla~~La   28 (340)
T 3d3q_A            1 MTEMT-KP-FLIVIVGPTASGKTELSIEVA   28 (340)
T ss_dssp             ------CC-EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCC-CC-ceEEEECCCcCcHHHHHHHHH
Confidence            55655 32 468899999999999998775

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.19  E-value=0.0033  Score=43.45  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      .|++.|.+||||||+...|-
T Consensus         9 ~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            67888999999999998874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.17  E-value=0.0042  Score=47.01  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..+.|+|.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.13  E-value=0.0028  Score=49.14  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999988654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.13  E-value=0.0028  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++++|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999988764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.11  E-value=0.003  Score=47.55  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.09  E-value=0.0016  Score=50.96  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            378999999999999999887643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.09  E-value=0.0028  Score=48.16  Aligned_cols=22  Identities=9%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3789999999999999988754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.08  E-value=0.0053  Score=45.00  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.-|++.|++||||||+++.+...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467889999999999999988643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.06  E-value=0.0036  Score=45.08  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..-|+++|++||||||+.+.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.04  E-value=0.0035  Score=45.13  Aligned_cols=21  Identities=19%  Similarity=0.158  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++++|++|+|||||+..+.+
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.03  E-value=0.0034  Score=49.06  Aligned_cols=23  Identities=13%  Similarity=0.346  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.02  E-value=0.0036  Score=45.81  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++++|++|+|||||+..+.+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.01  E-value=0.0038  Score=46.46  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      -.|+++|++|+||||+.+.+-
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.99  E-value=0.0032  Score=43.88  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-.+++.|++|+|||+|+..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999887643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.98  E-value=0.0052  Score=43.77  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..+.|.++|.+||||||+.+.|-.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999988753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.97  E-value=0.0044  Score=45.11  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-.+++.|++|+|||+|+..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0033  Score=51.04  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++|+|+.|||||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999988754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.96  E-value=0.0048  Score=46.92  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.95  E-value=0.0039  Score=48.88  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      --++++|+.||||||++..+.
T Consensus       158 ~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHH
Confidence            468899999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.94  E-value=0.0059  Score=47.10  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..|+|+|++|||||||...|.
T Consensus         6 ~~i~i~GptGsGKTtla~~La   26 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALA   26 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999998875

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.92  E-value=0.0044  Score=45.98  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.+++.|++|+|||+|++.+.+
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.89  E-value=0.0059  Score=50.55  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|||||||++.+.+...
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            478999999999999999987543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.87  E-value=0.0082  Score=42.71  Aligned_cols=85  Identities=12%  Similarity=0.083  Sum_probs=54.9

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCCCCCHH
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER--GGDVIIVLVGNKTDLVDKRQVSIE  135 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~  135 (207)
                      +.+.++|+|+..  .......+..+|.+|++...+...  ..+...+..+....  ....++.+|+|+.|....   ...
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence            678999999754  334455667899999999887543  55566666665432  234677999999985321   223


Q ss_pred             HHHHHHHHhCCeEE
Q 028546          136 EGDGKAKEFGVMFI  149 (207)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (207)
                      ........++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            44455555665554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.87  E-value=0.0059  Score=44.78  Aligned_cols=26  Identities=15%  Similarity=0.264  Sum_probs=21.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ......|.++|++||||||+...|..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999987753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.84  E-value=0.0045  Score=44.51  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ++-.+++.||||+||||+..++..
T Consensus        57 kkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           57 KKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            344699999999999999887754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.84  E-value=0.0068  Score=50.19  Aligned_cols=24  Identities=13%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++++|+.|+|||||++.+.+...
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            588999999999999999987543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.83  E-value=0.0053  Score=43.74  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999987643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.80  E-value=0.0048  Score=50.25  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -++|+|+.|+|||||++.+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHh
Confidence            46899999999999999886

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.80  E-value=0.0049  Score=48.68  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34788999999999999998875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.78  E-value=0.0068  Score=50.89  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            478999999999999999887543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.78  E-value=0.007  Score=43.17  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      .|.|.|++||||||+.+.|-
T Consensus         4 ~i~i~G~~GsGKst~~~~la   23 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.77  E-value=0.0052  Score=51.41  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999888764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.76  E-value=0.0055  Score=48.17  Aligned_cols=19  Identities=26%  Similarity=0.400  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      .+|+|+.|||||||++++.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999876

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.75  E-value=0.0049  Score=46.44  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++|+|++|+|||||+..+.+
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.74  E-value=0.0085  Score=48.89  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=46.6

Q ss_pred             EEEEEEecCChhhhccc-------ccccc-----ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           58 VRLQLWDTAGQERFRSL-------IPSYI-----RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~-------~~~~~-----~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      +.+.++||+|.......       ....+     ...+-++|++|++....   .......+....+   ...+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~~---itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAVG---LTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHTC---CSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhcC---CCEEEEEcCC
Confidence            45889999995321110       01111     23567899999875422   2222333443322   2368899999


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546          126 LVDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      -  ...  ...+......++.++.++.
T Consensus       450 ~--tak--gG~~lsi~~~~~~PI~fig  472 (503)
T 2yhs_A          450 G--TAK--GGVIFSVADQFGIPIRYIG  472 (503)
T ss_dssp             G--CSC--CTHHHHHHHHHCCCEEEEE
T ss_pred             C--ccc--ccHHHHHHHHHCCCEEEEe
Confidence            4  222  2234556667788876643

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.72  E-value=0.0068  Score=44.42  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..+++.|+|+|||||||+...|.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHH
Confidence            45899999999999999998774

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.72  E-value=0.0063  Score=43.93  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+.|+++|++||||||+...|.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~   24 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVA   24 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999998774

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.70  E-value=0.0097  Score=47.64  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..-|+++|++||||||+.++|..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45688899999999999999865

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.70  E-value=0.0055  Score=49.41  Aligned_cols=23  Identities=13%  Similarity=0.296  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      +++++|+.|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.68  E-value=0.0079  Score=50.52  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++++|+.|+|||||++.+.+...
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCC
Confidence            578999999999999999887543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.64  E-value=0.0066  Score=43.97  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++|.|++|+|||+|+..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998863

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.63  E-value=0.0083  Score=50.18  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999988764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.62  E-value=0.0087  Score=50.28  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++++|+.|+|||||++.+.+...
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987644

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.60  E-value=0.0051  Score=51.41  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            68899999999999999877654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.59  E-value=0.0078  Score=43.19  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.58  E-value=0.0074  Score=43.13  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+++.|++|+|||+|+..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.57  E-value=0.0082  Score=40.49  Aligned_cols=24  Identities=8%  Similarity=0.065  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ...|++.|++|+|||++...+-..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999988654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.56  E-value=0.0095  Score=49.30  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.55  E-value=0.0096  Score=49.29  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++|+|+.|+|||||++.+.+...
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987644

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.54  E-value=0.011  Score=43.23  Aligned_cols=29  Identities=17%  Similarity=0.116  Sum_probs=21.2

Q ss_pred             CCCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            3 SVSPLAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         3 ~~~~~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ++...+..-|++.|.+||||||+++.+..
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34445567789999999999999998753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.52  E-value=0.006  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            68999999999999999887654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.51  E-value=0.0067  Score=45.25  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ...|+|.|.+||||||+++.|...
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            367899999999999999877543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.50  E-value=0.0076  Score=45.67  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-.+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999988653

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.48  E-value=0.0084  Score=44.41  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.+++.|++|+|||+|+..+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.47  E-value=0.011  Score=42.84  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++-.-|++.|++||||||++..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Confidence            455678899999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.46  E-value=0.0081  Score=45.19  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-.+++.|++|+|||+|+.++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            356999999999999999988643

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.44  E-value=0.013  Score=44.53  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-+++.|+||+|||+|..++-.
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5567779999999999998754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.44  E-value=0.0072  Score=47.22  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -+.|+|++|+|||||+..+.+.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.44  E-value=0.0082  Score=43.94  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++++|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468899999999999877753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.43  E-value=0.007  Score=50.67  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999887653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.012  Score=49.39  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFD   35 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~   35 (207)
                      ++++|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            689999999999999999876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.35  E-value=0.0091  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.+++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            45899999999999999988753

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.34  E-value=0.01  Score=47.20  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+++|++++|...|||||++.++.
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHHH
Confidence            457999999999999999999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.30  E-value=0.0097  Score=45.76  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45889999999999999988653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.27  E-value=0.012  Score=42.15  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      ..|+|+|++|+|||||...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            568999999999999999987553

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.26  E-value=0.013  Score=44.60  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ...+++.|++|+|||+|...+.
T Consensus        67 ~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999997554

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.25  E-value=0.013  Score=43.13  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-|++.|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5688999999999999998764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.23  E-value=0.0088  Score=46.45  Aligned_cols=20  Identities=20%  Similarity=0.394  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998866

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.23  E-value=0.0099  Score=45.32  Aligned_cols=85  Identities=12%  Similarity=0.038  Sum_probs=47.0

Q ss_pred             EEEEEEecCChhhhccc----cccccc--cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSL----IPSYIR--DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.|+||+|.......    ....+.  ..+.+++|+|++..  ...+..+...+.. .   ...-+|+||.|....  
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~-l---~~~giVltk~D~~~~--  254 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS-V---PVNQYIFTKIDETTS--  254 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS-S---CCCEEEEECTTTCSC--
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc-C---CCCEEEEeCCCcccc--
Confidence            57999999996543211    111222  36788999988743  2333333322221 1   123567799996322  


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                        ...+.......+.++.++.
T Consensus       255 --~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 --LGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CHHHHHHHHTCSCCCSEEC
T ss_pred             --hhHHHHHHHHHCcCEEEEE
Confidence              2345556667787765544

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.21  E-value=0.087  Score=38.39  Aligned_cols=90  Identities=12%  Similarity=0.033  Sum_probs=58.9

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE  136 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  136 (207)
                      .+.+.|+|+|+..  .......+..+|.+|++...+ ..+...+...++.+.........+.+|+|+.+...  ....  
T Consensus       118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--  190 (245)
T 3ea0_A          118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--  190 (245)
T ss_dssp             HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH--
T ss_pred             hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH--
Confidence            3679999998743  234455677899999999876 46677777777777654333455889999998532  2333  


Q ss_pred             HHHHHHHhCCeEEEEecC
Q 028546          137 GDGKAKEFGVMFIETSAK  154 (207)
Q Consensus       137 ~~~~~~~~~~~~~~~s~~  154 (207)
                       +...+.++.+++.+-..
T Consensus       191 -~~~~~~~~~~v~~~ip~  207 (245)
T 3ea0_A          191 -DEIEKVIGRPISKRIPQ  207 (245)
T ss_dssp             -HHHHHHHTSCEEEEECC
T ss_pred             -HHHHHHhCCCeEEECCC
Confidence             33344567777655333

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.21  E-value=0.0063  Score=46.27  Aligned_cols=23  Identities=13%  Similarity=0.257  Sum_probs=16.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.+-|+|.|+.||||||+.+.|.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~   26 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFD   26 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34569999999999999998875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.18  E-value=0.012  Score=45.13  Aligned_cols=86  Identities=13%  Similarity=0.055  Sum_probs=48.4

Q ss_pred             EEEEEEecCChhhhcccc-------ccc-----cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           58 VRLQLWDTAGQERFRSLI-------PSY-----IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~-------~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      +.+.++|+||........       ...     -...+.+++|+|+...  .+.+.. ...+....   ...-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCC
Confidence            468999999953211110       111     1247889999999733  222222 23333322   23467789999


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEEec
Q 028546          126 LVDKRQVSIEEGDGKAKEFGVMFIETSA  153 (207)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (207)
                      ...  .  ...+.......+.|+.++..
T Consensus       261 ~~~--~--gG~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTA--K--GGITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCS--C--TTHHHHHHHHHCCCEEEEEC
T ss_pred             Ccc--c--hHHHHHHHHHHCCCEEEEeC
Confidence            521  1  22356667778888877654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.16  E-value=0.01  Score=46.41  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.++|.|++|+|||||++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.14  E-value=0.011  Score=43.16  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=16.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.-|+|.|++||||||+++.+..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36688889999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.13  E-value=0.011  Score=46.28  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .++|.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.12  E-value=0.016  Score=44.54  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..-|+|+||.|||||||...+..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            34588999999999999998864

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.10  E-value=0.013  Score=45.56  Aligned_cols=18  Identities=22%  Similarity=0.658  Sum_probs=16.4

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028546           13 VFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        13 ~v~G~~~sGKStli~~l~   30 (207)
                      +|+|+.|+|||||+.++.
T Consensus        27 ~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           27 LIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEECCTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            689999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.08  E-value=0.014  Score=42.98  Aligned_cols=24  Identities=21%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++..-|++.|++||||||++..+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~   48 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVV   48 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            445678999999999999999875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.07  E-value=0.013  Score=44.43  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ..+++.|++|+|||+|+..+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.07  E-value=0.011  Score=48.74  Aligned_cols=19  Identities=26%  Similarity=0.454  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|++|||||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.06  E-value=0.019  Score=42.94  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ....+++.|++|+|||+|...+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4467999999999999999988653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.96  E-value=0.014  Score=45.26  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+++.|++|+||||++..+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988754

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=94.95  E-value=0.014  Score=45.00  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.|++.|++|+|||+|+.++...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            56899999999999999988754

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.94  E-value=0.073  Score=38.16  Aligned_cols=85  Identities=11%  Similarity=-0.006  Sum_probs=54.7

Q ss_pred             EEEEEEecCCh-hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028546           58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEE  136 (207)
Q Consensus        58 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  136 (207)
                      +.+.++|+|+. ..  ......+..+|.+|++...+. .+...+...+..+....  +.++.+|+|+.|....  ....+
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence            57899999875 32  233445678999999998763 56666666666666532  3568899999985320  11334


Q ss_pred             HHHHHHHhCCeEE
Q 028546          137 GDGKAKEFGVMFI  149 (207)
Q Consensus       137 ~~~~~~~~~~~~~  149 (207)
                      ..+....++.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            4444455665554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.94  E-value=0.15  Score=38.88  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      +++.|++|+|||+++..+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455577999999999988543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.89  E-value=0.016  Score=40.76  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.88  E-value=0.026  Score=44.08  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..+|+++|++|+||||+...+.
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHH
Confidence            4679999999999999998653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.88  E-value=0.016  Score=51.09  Aligned_cols=24  Identities=13%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++++|+.|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            478999999999999999986654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.87  E-value=0.024  Score=43.02  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.+++.|++|+|||+++..+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999987653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=94.86  E-value=0.014  Score=46.38  Aligned_cols=20  Identities=15%  Similarity=0.321  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -+.|+|++|+|||||+..+.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            37899999999999999775

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.85  E-value=0.023  Score=43.49  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      .-|+|+|+.|||||||...+.
T Consensus        11 ~~i~i~GptgsGKt~la~~La   31 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELR   31 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHH
Confidence            457889999999999999885

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=94.85  E-value=0.035  Score=40.49  Aligned_cols=27  Identities=11%  Similarity=-0.014  Sum_probs=21.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .+++-|++.|+++.||++|++++++..
T Consensus        27 ~nkilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           27 QNKILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             CCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             CCceEEEecCcccccHHHHHHHHhccc
Confidence            344555555999999999999999874

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.79  E-value=0.012  Score=45.40  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -.+|+|+.|+|||||+.++.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHH
Confidence            46799999999999999987

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=94.78  E-value=0.018  Score=44.40  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++|.|++|+|||||+.++...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            4788999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.77  E-value=0.012  Score=51.85  Aligned_cols=24  Identities=17%  Similarity=0.469  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .++|+|+.|+|||||++.+.+...
T Consensus       701 ivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             EEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987643

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.76  E-value=0.018  Score=44.30  Aligned_cols=23  Identities=13%  Similarity=0.265  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...+++.|++|+|||+|+.++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            35799999999999999998854

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.76  E-value=0.086  Score=38.97  Aligned_cols=67  Identities=15%  Similarity=0.072  Sum_probs=43.2

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHH---HHHHHHhcCCCCeE-EEEEeCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVII-VLVGNKTDL  126 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~---~~~i~~~~~~~~p~-ivv~nK~D~  126 (207)
                      .+.+.|+|+|+....  .....+..+|.+|++...+. .++..+...   +..+......+.++ -+|+|+.|.
T Consensus       111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~  181 (257)
T 1wcv_1          111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG  181 (257)
T ss_dssp             TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence            367999999975322  23344567999999999875 444444443   44444333445666 489999985

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.72  E-value=0.018  Score=45.58  Aligned_cols=24  Identities=13%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ..+++|+|++|+|||+|++.++..
T Consensus        35 ~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           35 NSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCceEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999988754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.69  E-value=0.015  Score=45.40  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-.++|.|++|+|||+|+..+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            347899999999999999988753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=94.69  E-value=0.025  Score=43.88  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-|+|+|+.|||||||...|-.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998863

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.68  E-value=0.019  Score=45.01  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -.+++|+.|+|||||++.+.
T Consensus        28 ~~~i~G~nG~GKttll~ai~   47 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAY   47 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHH
Confidence            46889999999999999886

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.67  E-value=0.019  Score=44.48  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+++.|++|+|||+++..+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-51
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-50
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	8e-48
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-47
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-46
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-46
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-44
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-43
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-43
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	6e-42
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-42
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-40
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-40
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-40
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-39
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-36
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	8e-36
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-35
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	9e-35
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-34
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	2e-34
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-34
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-33
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-33
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-32
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-32
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-32
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-31
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-30
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-30
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-30
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-29
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-29
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-29
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	6e-29
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-28
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-28
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	2e-27
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-27
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-25
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-25
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-24
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	5e-24
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-23
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-22
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-22
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	3e-22
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-22
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-22
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-18
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	6e-18
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-16
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-14
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-09
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	3e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	5e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	9e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	3e-04
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	8e-04
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	0.002
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.002

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (408), Expect = 2e-51
 Identities = 133/164 (81%), Positives = 150/164 (91%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLG+QSVGKTS+ITRFMYD FD TYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRSLIPSYIRDS+ AV+VYD+ N  SF  T++WI++VRTERG DVII+LVGNKTDL DK
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGM 173
           RQVSIEEG+ KAKE  VMFIETSAKAG+N+K LFR++AAALPGM
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM 164

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  158 bits (401), Expect = 3e-50
 Identities = 70/161 (43%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ N +SF N   WI  +      DV  +++GNK D+ DK
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           RQVS E G+  A ++G+ F+ETSAKA  N++  F  +A  +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (387), Expect = 8e-48
 Identities = 73/187 (39%), Positives = 110/187 (58%), Gaps = 5/187 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D +   Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R S   +IVYDV +++SF     W++E+       V+ +LVGNK DL DK
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL-----PGMETLSSTKQEDM 184
           R V  +     A    + F+ETSA    N++  F  +A  +           ++ K+ED 
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 186

Query: 185 VDVNLKP 191
            +VNLK 
Sbjct: 187 GNVNLKG 193

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 6e-47
 Identities = 64/161 (39%), Positives = 98/161 (60%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++  ++ YD+   +SF     W+ E+       VI VLVGNK DL ++
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+VS +  +  ++   + ++ETSAK   N++ LF  +A  L
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (377), Expect = 1e-46
 Identities = 63/161 (39%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  +Y R +   ++VYD+ + ++F N  +W + V      +  ++LVGNK+D+ + 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 121

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V+ ++G+  AKE G+ FIE+SAK   N+  +F  +A  +
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (373), Expect = 5e-46
 Identities = 70/162 (43%), Positives = 104/162 (64%), Gaps = 1/162 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFRS+  +Y RD+   +++YDV N+ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           +R V  E+G+  AKE+G+ F+ETSAK G N+   F  IA  L
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  144 bits (364), Expect = 1e-44
 Identities = 58/161 (36%), Positives = 108/161 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R +  +Y R +  A++VYD+A   ++ N  RW++E+R     +++I+LVGNK+DL   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  +E    A++  + FIETSA    N++  F+ I   +
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 4e-43
 Identities = 59/161 (36%), Positives = 102/161 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V+ EE    A+E G++F+E SAK G N++  F + A  +
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  140 bits (352), Expect = 5e-43
 Identities = 62/161 (38%), Positives = 99/161 (61%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           R+R++  +Y R +   +++YD+ N +SF     W  +++T    +  ++LVGNK D+ D+
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R VS E G   A   G  F E SAK   N+K  F ++   +
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (346), Expect = 6e-42
 Identities = 60/161 (37%), Positives = 107/161 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+E+ R     +++I+L+GNK+DL  +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R V  EEG+  A+E G++F+ETSAK   N++  F   A  +
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 9e-42
 Identities = 60/170 (35%), Positives = 97/170 (57%), Gaps = 3/170 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTA
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL 126
           GQERFR+L PSY R +   ++VYDV  R +F+    W+ E+ T    + I+ ++      
Sbjct: 65  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL---PGM 173
            + R+V   EG   A++  ++FIE SAK    ++  F ++   +   PG+
Sbjct: 125 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 3e-40
 Identities = 68/167 (40%), Positives = 110/167 (65%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A++VYD+ N +SF     W++E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           DL +KR V  +E    A +  ++F+ETSAK   N+  +F  IA  LP
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (334), Expect = 4e-40
 Identities = 59/161 (36%), Positives = 101/161 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF      TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RFRS+  SY R ++ A++VYD+ +R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           R+V+  E    A+E  +MF+ETSA  G N++  F + A  +
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 9e-40
 Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + N+QSF +     +++   +  + V ++LVGNK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            +R+VS  EG   A+E+G  F+ETSAK+   +  LF +I   +
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 4e-39
 Identities = 62/172 (36%), Positives = 100/172 (58%), Gaps = 11/172 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ ++QSFLN   W+ +++     +   IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           L+GNK DL D+R+V+  +    A ++G+ + ETSA  G N++     +   +
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 2e-36
 Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 2/166 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF+  +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
           RF +L P Y RDS+ A++VYD+ +  SF     W++E+R   G ++ + +VGNK DL  +
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
           R VSI+E +  A+  G     TSAK    I+ LF  +   +  +ET
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM--IET 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  121 bits (305), Expect = 8e-36
 Identities = 56/165 (33%), Positives = 97/165 (58%), Gaps = 2/165 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTD 125
           GQE + ++  +Y R     + V+ +   +SF  T+ + E++   +   +V  +LVGNK+D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           L DKRQVS+EE   +A ++ V ++ETSAK   N+  +F  +   +
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 64/163 (39%), Positives = 95/163 (58%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDTAG 
Sbjct: 4   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL 63

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           ERFR+L P Y R S+ A+IVYD+   ++F     W+ E+R      +++ + GNK DL D
Sbjct: 64  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 123

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            R+V   +    A     +F+ETSAK   NI  LF +I+  +P
Sbjct: 124 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 9e-35
 Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 2   ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A  S L  +K++ LGD  VGK+S++ R++ +KFDT    TIG++FL+K + ++   V +Q
Sbjct: 1   AGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 58

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVR----TERGGDVII 117
           +WDTAGQERFRSL   + R S   ++ + V + QSF N S W +E       +       
Sbjct: 59  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 118

Query: 118 VLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAAL 170
           V++GNK D+ + RQVS EE     ++ G   + ETSAK   N+   F +    +
Sbjct: 119 VILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (297), Expect = 1e-34
 Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 3/164 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDL---V 127
           F SL P Y R++  A++VYDV   QSF+    W++E+  +   D+II LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            +R+V+ EEG+  A+E G++F ETSAK G N+  +F  I   +P
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 49/165 (29%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + N +SF +  ++ E+++  +  D V +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            +  R V   +    A+ +G+ +IETSAK    ++  F  +   +
Sbjct: 120 -LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (291), Expect = 7e-34
 Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 5/163 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 70  RFRSL-IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLV 127
           RFR   +  Y R+    V VYD+ N  SF +   WIEE +      D+  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKA---GFNIKPLFRKIA 167
              QV  +     A    +   ETSAK      +++ +F  +A
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 3e-33
 Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 14/174 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            +  L P     + V ++ + V +  SF N         T        +LVG + DL D 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 130 RQV------------SIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIAAAL 170
                          + E  +  A++   V ++E SA     +K +F +   A 
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 8e-33
 Identities = 55/163 (33%), Positives = 92/163 (56%), Gaps = 2/163 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KY+LV +G   VGK+++  +F+   F T Y  TI  D  +K   ++DR  RL + DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE-VRTERGGDVIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ V +R SF    ++  + +R +   +  ++L+GNK DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            +RQV+ EEG   A++  V ++E SAK   N+   F ++   +
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 1e-32
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 14/182 (7%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
            L+DTAGQE +  L P     + V +I + V N  SF N          E   +V  +L+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 121 GNKTDLVDKRQ------------VSIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIA 167
           G + DL D  +            + +E+G   AKE G   ++E SA     +K +F +  
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 168 AA 169
            A
Sbjct: 180 IA 181

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 14/174 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK 129
            +  L P     + V++I + + +  SF N              +  I+LVG K DL D 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 130 RQVSIE------------EGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAAL 170
           +    +            +G   AKE G V ++E SA     +K +F +   A+
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 2e-32
 Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 2/166 (1%)

Query: 6   PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           P   +KLV +G   VGK+++  +F+   F + Y      D  +K   ++    RL + DT
Sbjct: 3   PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDT 61

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD-VIIVLVGNKT 124
           AGQE F ++   Y+R     ++V+ + +RQSF    +   ++   +  D   +VLVGNK 
Sbjct: 62  AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKA 121

Query: 125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           DL  +RQV   E         V + E SAK   N+   F ++  A+
Sbjct: 122 DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (279), Expect = 6e-32
 Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 3/164 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY +  + +F +     E++   +   DV ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 DKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFRKIAAAL 170
           D+R V  E+G   A+++    F+E+SAK+  N+  +F  +   +
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 14/175 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  +     + ++ + V L LWDTAG 
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGL 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           E +  L P    D+ V ++ + + +  S  N              +V I+LVGNK DL +
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 129 KRQV------------SIEEGDGKAKEFGVM-FIETSAKAGFNIKPLFRKIAAAL 170
                             EEG   A   G   ++E SAK    ++ +F     A 
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (270), Expect = 2e-30
 Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 4/177 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF   Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG----DVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV    +F     W +E   +       +   V++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQE 182
           L +++  +         +  + + ETSAK   N++  F+ IA      ET      E
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 179

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 3e-30
 Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 15/176 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G 
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGS 60

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
             + ++ P    DS   +I +D++  ++  +  +  +    E   +  ++LVG K+DL  
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 129 ------------KRQVSIEEGDGKAKEFGVM-FIETSAKAGFN-IKPLFRKIAAAL 170
                       +  VS ++G   AK+ G   +IE SA    N ++ +F     A 
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 3e-30
 Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
           F ++  +Y R +   V+V+   +R+SF   S W E+V  E  GD+   LV NK DL+D  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDS 122

Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            +  EE +G AK   + F  TS K   N+  +F+ +A
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 159

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 3/160 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVD 128
            F ++   Y+R     +IVY V ++ SF +  R+ + + R +      ++LV NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAG-FNIKPLFRKIA 167
            R+V+ ++G   A ++ + +IETSAK    N+   F  + 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +  TT               +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-----PTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV----GNKTDL 126
            R L   Y +++   + V D  +R+        +  +  E      ++LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           ++  +++ + G    +        T A +G  +      ++  L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 48/168 (28%), Positives = 88/168 (52%), Gaps = 3/168 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD 128
           E+F  L   Y   +  A+I++DV +R ++ N   W  ++      ++ IVL GNK D+ D
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD 121

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
           ++     +     ++  + + + SAK+ +N +  F  +A  L G   L
Sbjct: 122 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 6e-29
 Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 7/168 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL-QLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++   V   Q+WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW----IEEVRTERGGDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV N  SF N   W    +             V++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 125 DLVDKRQVSIE-EGDGKAKEFG-VMFIETSAKAGFNIKPLFRKIAAAL 170
           D  + +++  E      AK  G +    TSAK   N+   F +IA + 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 5e-28
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLV 127
           +F ++    I      ++VY + +RQS        E++   +G    + I+LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
             R+V   E +  A+ +   F+ETSAK   N+K LF+++ 
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  101 bits (252), Expect = 8e-28
 Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +  TT   TIG +       L  + ++L +WD  GQ
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNV----ETLSYKNLKLNVWDLGGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLV 127
              R     Y  D++  + V D  ++      S+ +  +  E    D  +++  NK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 128 D---KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
                 +VS E    + K+     + +SA  G  I      +   +
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 4/165 (2%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAG
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDL 126
           QE        ++R     V+VYD+ +R SF         +   +   +V ++LVGNK DL
Sbjct: 60  QEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 118

Query: 127 VDKRQVSIEEGDGKAKEFGVMFIETSAKAG-FNIKPLFRKIAAAL 170
              RQVS EEG+  A E    F E SA  G  NI  +F ++   +
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  100 bits (248), Expect = 3e-27
 Identities = 33/166 (19%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +  TT      + F  +T+    + V+  +WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVGFNVETVT--YKNVKFNVWDVGGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDL- 126
           ++ R L   Y   +   + V D A+R       + +  +  +R   D II++  NK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 127 --VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
             +   ++  + G  + ++       + A +G  +      + +  
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 95.1 bits (235), Expect = 2e-25
 Identities = 29/166 (17%), Positives = 63/166 (37%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++   T               +     R  +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-----EIVINNTRFLMWDIGGQ 69

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDL- 126
           E  RS   +Y  ++   ++V D  +R+    T   + ++          +++  NK D+ 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 127 --VDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
             +   ++S        K+         A  G  +      + + L
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 7e-25
 Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 2/160 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             K+  LG +SVGK+S+  +F+  +F  +Y  TI  +  +K + +  +   LQL DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLV 127
           + +     +Y  D +  ++VY V + +SF        ++        + I+LVGNK DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            +R +S EEG   A+ +   F+E+SAK       +FR+I 
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 92.3 bits (228), Expect = 2e-24
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 9/167 (5%)

Query: 5   SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +P  + +++ LG  + GKT+++ +   +        T G +  S       +  +L +WD
Sbjct: 12  APDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQS----QGFKLNVWD 66

Query: 65  TAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNK 123
             GQ + R    SY  ++ + + V D A+R+ F  T + + E+  E     V +++  NK
Sbjct: 67  IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 124 TDLVDKRQVSI---EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
            DL+     S           ++        SA  G  ++     + 
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (225), Expect = 5e-24
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++   F   +               +++ ++     L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIVLVGNKTDLVD 128
             R L    +      VIVY V ++ SF   S   ++  R  +  DV I+LVGNK+DLV 
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 129 KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
            R+VS++EG   A  F   FIETSA    N++ LF  +   +
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     TI          LE R  +L +WD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW-IEEVRTERGGDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A+RQ   +  R     +  ER     +++  NK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 128 DKRQVSI---EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
                +           +         SA  G ++ P    +   +
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 2e-22
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 3/165 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            Y++V +G+Q VGK+++   F            +  +   +   + D      +     +
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVA---NRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125
            +  +              +   +          +   I+  R  +  D+ I+LVGNK+D
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           LV  R+VS+ EG   A  F   FIETSA    N+K LF  I   +
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 8/163 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G +       +    V ++LWD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLV 127
            RFRS+   Y R  S  V + D A+++    +   +  +  +     + ++++GNK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 128 D---KRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
               ++++  +      ++  +     S K   NI    + + 
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (214), Expect = 3e-22
 Identities = 36/185 (19%), Positives = 78/185 (42%), Gaps = 18/185 (9%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + + +L  LGD   GK+S+I RF+   +          +   K M ++ +T  + + + A
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEA 60

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRW---IEEVRTERGGDVIIVLVGNK 123
           G    +     +   +   + V+ + +  SF   SR    +  +R E  G + + LVG +
Sbjct: 61  GAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 115

Query: 124 TDLVDKRQVSIEEGDGK---AKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
             +       + +   +   A      + ET A  G N+  +F+++A  +     ++  K
Sbjct: 116 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV-----VTLRK 170

Query: 181 QEDMV 185
           Q+ ++
Sbjct: 171 QQQLL 175

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.3 bits (212), Expect = 5e-22
 Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 16/168 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+FLG  + GKT+++     D+      AT+   +   +  L    ++   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDK 129
            R L   Y  + +  V + D A+ + F      ++ +       DV  V++GNK D  + 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 130 RQVS----------IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
              +                   +  V     S          F+ ++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 85.9 bits (211), Expect = 7e-22
 Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 9/166 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +  TT               +  + ++ Q+WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGL 59

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLV 127
              R     Y  ++   + V D  +R     +   +  +  E       +V+  NK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 128 DKRQVS---IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
                S      G    K+      +TSA  G  +      +   L
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.6 bits (190), Expect = 2e-18
 Identities = 29/170 (17%), Positives = 53/170 (31%), Gaps = 20/170 (11%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LG    GK++ + +    +       T GI         E + V  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 70  RFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE-----------VRTERGGDVIIV 118
             R          +  + +   +     L   R               V      +V I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 119 LVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA 168
           L  NKTDL++++   +   D   +  G        +    +   FR    
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQK--FLVECFRGKRR 163

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 77.0 bits (188), Expect = 2e-18
 Identities = 33/178 (18%), Positives = 63/178 (35%), Gaps = 21/178 (11%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+                +  L    +    +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGH 67

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG-DVIIVLVGNKTDLV 127
            + R +  +Y+   +  V + D A+ +  L +   ++ + T+    +V I+++GNK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 128 DKRQVS------------IEEGDGKAKEFG---VMFIETSAKAGFNIKPLFRKIAAAL 170
           +                   +G    KE     +     S          FR +A  +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.1 bits (186), Expect = 6e-18
 Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 43/196 (21%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++ I +            T GI      +         ++ D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQ 55

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQS-----------FLNTSRWIEEVRTERGGDVII 117
              R        + +  + +  ++                 + + +   +      +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 118 VLVGNKTDLVDKRQVSIEEGDGKAKEFG--------------------------VMFIET 151
           +L  NK DL++++ +     D   +  G                          +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 152 SAKAGFNIKPLFRKIA 167
            A    NI+ +F  + 
Sbjct: 176 CATDTENIRFVFAAVK 191

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.0 bits (181), Expect = 6e-17
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 20/172 (11%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A ++L+ LG    GK++I+ +            T GI         +   V   ++D  G
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETK----FQVDKVNFHMFDVGG 56

Query: 68  QERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEE-----------VRTERGGDVI 116
           Q   R        D +  + V   ++    +                           + 
Sbjct: 57  QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 116

Query: 117 IVLVGNKTDLVDKRQVSIEEGDGKA-KEFGVMFIETSAKAGFNIKPLFRKIA 167
           ++L  NK DL+ ++ ++ +        EF        A       P   +  
Sbjct: 117 VILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAK 168

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.7 bits (177), Expect = 1e-16
 Identities = 27/196 (13%), Positives = 50/196 (25%), Gaps = 46/196 (23%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++I+ +        T        F      +         +D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKM---------FDVGGQ 52

Query: 69  ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR-----------WIEEVRTERGGDVII 117
              R          +  +    +++    L               +      +   D  I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 118 VLVGNKTDLVDKRQVSIEEGD------------GKAKEFGVMFI--------------ET 151
           +L  NK DL +++                      A      F                T
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 152 SAKAGFNIKPLFRKIA 167
            A    N++ +F  + 
Sbjct: 173 CATDTKNVQFVFDAVT 188

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.8 bits (159), Expect = 4e-14
 Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 5/128 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++F+G    GKT +  R +  ++  T   +I        +          +     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSR----WIEEVRTERGGDVIIVLVGNKTDL 126
              L+  +   +   V V D A  Q  +         +            +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 127 VDKRQVSI 134
              +   +
Sbjct: 121 AMAKSAKL 128

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (123), Expect = 5e-09
 Identities = 23/175 (13%), Positives = 59/175 (33%), Gaps = 23/175 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  ++  G Q+ GKTS++T    D    T  +             +     + L D  G 
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE------PLSAADYDGSGVTLVDFPGH 56

Query: 69  ERFRSLIPSYIRDSSVA-----VIVYDVANRQSFLNTSRWIEEVRTE----RGGDVIIVL 119
            + R  +  Y++  +        +V    + +    T+ ++ ++ +         + I++
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 120 VGNKTDLVDKRQVSIE--------EGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
             NK++L   R  S          +   + ++  +  +E         +     +
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL 171

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (114), Expect = 4e-08
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 1/160 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V  G  + GK+S++      +         G        ++    + L + DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR 130
               +     + +   I            T+    +        +  +       +V  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 131 QVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
                E  G ++  G   I  SA+ G  +  L   +  ++
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 24/181 (13%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDTT------------------YQATIGIDFLSKTMYLE 54
           +F G  +VGK+++I R    K                           G  F+       
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 55  DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD 114
              ++ ++            +   + D   A  +     ++        +E  +  R  D
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGE--IPIDVEFYQFLRELD 121

Query: 115 VIIVLVGNKTDLVDKRQVSI----EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           +  ++  NK D +   Q  I    E+ +    E   +FI  SAK G NI+ L  +I   +
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181

Query: 171 P 171
            
Sbjct: 182 R 182

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 11/166 (6%)

Query: 13  VFLGDQSVGKTSIITRFM-------YDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             +G  +VGK++++   +         +  TT +   GI    +   +   T  L     
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125
           A  E     +   + D +  V V D+ +  +  +               +++V  GNK D
Sbjct: 69  ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV--GNKLD 126

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
                + +++       E     +  SA     +  L   + A +P
Sbjct: 127 AAKYPEEAMKAYHELLPEAEPRML--SALDERQVAELKADLLALMP 170

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 24/166 (14%), Positives = 54/166 (32%), Gaps = 11/166 (6%)

Query: 14  FLGDQSVGKTSIITRFM-------YDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
            +G  + GK+S++              F T     +G+  +S+        +   +   +
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 67  GQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIE-EVRTERGGDVIIVLVGNKTD 125
             +        +I  + V + V D A+       +   E             ++  NK D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           L+++    ++         G+  +  SA  G  +  L   + A + 
Sbjct: 125 LLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR 168

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 10/166 (6%)

Query: 13  VFLGDQSVGKTSIITRFM-------YDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             +G  +VGK++++ + +         K  TT    +GI        +   T  L + + 
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 68

Query: 66  AGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD 125
               R  +   S        VI      R +  +     +      G   +I+ V    +
Sbjct: 69  RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK---LREGKAPVILAVNKVDN 125

Query: 126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
           + +K  +        ++   +  +  SA+ G N+  +   +   LP
Sbjct: 126 VQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 171

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 20/177 (11%), Positives = 48/177 (27%), Gaps = 10/177 (5%)

Query: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
           +  +      ++ F G  + GK+S +      K       T G   L     + D    +
Sbjct: 8   IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 67

Query: 61  QLWDTAGQERFRSLIPSY------IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGD 114
            L      E    +   +        +   ++    V             + +      +
Sbjct: 68  DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSN 127

Query: 115 VIIVLVGNKTDLVDKRQVSIEEGD----GKAKEFGVMFIETSAKAGFNIKPLFRKIA 167
           + ++++  K D +       +         A    V     S+     +  L +K+ 
Sbjct: 128 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  +G  +VGK+++    +  +         G         +     +    DTAG  R
Sbjct: 10  KVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 71  FRSLIPSYIRD----------SSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLV 120
              + P  +                V+V  +   Q      + +  +   RG   ++V  
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 121 GNKTDLVDKRQVSIEEGDGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
                +  +++        + K +       I TSA  G+NI  +   +  A     T
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTT 186

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.4 bits (90), Expect = 9e-05
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 8/164 (4%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72
           + +G  +VGK+++  + +  K     +   G+        +E      +L DT G     
Sbjct: 4   LIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 73  SLIPSYIRDSSVAVIVYDV-----ANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV 127
             I S         ++ +              T          R   V  +LV NK + +
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 128 DKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALP 171
            + +  ++           + +  SA+   N+  +   I   L 
Sbjct: 123 REFEREVKPELYSLGFGEPIPV--SAEHNINLDTMLETIIKKLE 164

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFM-YDKFDTTYQATIGIDFLSKTMYLEDRT--------VRLQ 61
           ++V +G  +VGK++++ R +  D+   T       D +S+ + +            VR +
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVG 121
             D   +      +   I  + + + V D ++           +    ER  +   ++V 
Sbjct: 62  TNDLVERLGIERTL-QEIEKADIVLFVLDASSPL------DEEDRKILERIKNKRYLVVI 114

Query: 122 NKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI 166
           NK D+V+K      +            ++ SA  G  ++ L   I
Sbjct: 115 NKVDVVEKINEEEIK---NKLGTDRHMVKISALKGEGLEKLEESI 156

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 7/136 (5%)

Query: 41  TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT 100
           T        +        R+   D  G E   + + S       A++V           T
Sbjct: 69  TEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT 128

Query: 101 SRWIEEVRTERGGDVIIVLVGNKTDLVDK--RQVSIEEGDGKAKEFG---VMFIETSAKA 155
                 +     G   +++V NK D+V K        +     K      V  I  SA  
Sbjct: 129 REHFVALGII--GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALH 186

Query: 156 GFNIKPLFRKIAAALP 171
             NI  L   I   + 
Sbjct: 187 KINIDSLIEGIEEYIK 202

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 16/169 (9%), Positives = 48/169 (28%), Gaps = 9/169 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++   G  +VGK+S I   +  K      +  G         + D    + +      + 
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 71  FRSLIPSY------IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT 124
            +S   ++         +   +             ++  ++     +   + ++++  K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 125 DLVDKRQVSI---EEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAAL 170
           D + K +              +     I  S++        +  I   +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 24/163 (14%), Positives = 44/163 (26%), Gaps = 7/163 (4%)

Query: 21  GKTSIITRFMY-------DKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73
           GKT++             DK   + +  I ID       LE+  + L             
Sbjct: 17  GKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAV 76

Query: 74  LIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS 133
           +  + I D ++ V+      +         ++         +         ++     + 
Sbjct: 77  VSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIM 136

Query: 134 IEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176
                          I  SAK GF +  L   I   L   E +
Sbjct: 137 KSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEII 179

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 24/182 (13%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 14  FLGDQSVGKTSIITRFM-------YDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
            +G  SVGK+++++             F T       ++      ++      L      
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ 65

Query: 67  GQERFRSLIPSYIRDSSVAVIVY----DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGN 122
           G       +    R   +  ++     +  +      T          R  +   ++V N
Sbjct: 66  GVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 125

Query: 123 KTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQE 182
           K D+ +  +      +    ++ V  I  SA     ++ L  ++A  L          +E
Sbjct: 126 KMDMPEAAENLEAFKEKLTDDYPVFPI--SAVTREGLRELLFEVANQLENTPEFPLYDEE 183

Query: 183 DM 184
           ++
Sbjct: 184 EL 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.86
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.79
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.71
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.69
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.62
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.61
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.42
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.4
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.37
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.33
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.27
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.11
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.5
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.39
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.3
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.28
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.23
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.22
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.18
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.13
d1okkd2	207	GTPase domain of the signal recognition particle r	98.11
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.05
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.88
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.79
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.77
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.63
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.63
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.52
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.49
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.47
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.46
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.42
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.42
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.38
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.31
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.23
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.22
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.19
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.19
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.16
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.16
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.12
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.11
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.09
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.07
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.07
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.05
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.04
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.04
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.03
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.99
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.98
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.95
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.94
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.93
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.92
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.92
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.89
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.88
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.88
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.87
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.87
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.86
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.85
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.85
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.82
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.81
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.8
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.78
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.74
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.73
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.7
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.69
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.66
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.65
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.63
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.58
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.53
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.53
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.51
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.42
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.41
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.4
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.3
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.24
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.24
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.21
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.19
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.08
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.06
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.03
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.99
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.98
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	95.91
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.91
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.9
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.87
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.78
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.77
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.72
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.66
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.64
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.52
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.4
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.4
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.37
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.37
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.33
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.3
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.29
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.29
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.28
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.27
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.2
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.08
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.08
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.06
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.04
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.92
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.9
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.78
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.68
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.66
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.61
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.55
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.46
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.35
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.35
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.29
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.27
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.26
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.24
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.18
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.08
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.88
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.87
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.82
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.79
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.72
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.56
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.49
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.37
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.36
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.31
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.27
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.21
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.14
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.76
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.72
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.46
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.12
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.89
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.76
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.71
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.36
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.35
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.0
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	89.98
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	89.78
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.98
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.31
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.73
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.46
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.32
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.25
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.24
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.86
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.76
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.33
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.27
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	84.26
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	82.88
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.88
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.64
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	80.33

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.9e-36  Score=214.37  Aligned_cols=165  Identities=38%  Similarity=0.698  Sum_probs=155.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+||+||++++..++..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            35899999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||+++++++..+..|+..+........|+++++||.|+.+.+.+..++++.+++.+++++++|||++|.|++++|++|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            99999999999999999988877777899999999999988888889999999999999999999999999999999999


Q ss_pred             HHcCC
Q 028546          168 AALPG  172 (207)
Q Consensus       168 ~~~~~  172 (207)
                      +.+.+
T Consensus       164 ~~i~e  168 (169)
T d3raba_         164 DVICE  168 (169)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-36  Score=212.80  Aligned_cols=166  Identities=39%  Similarity=0.717  Sum_probs=157.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      .++++||+|+|.+|+|||||+++|..+.+...+.++.+..........++....+.+||++|++++...+..+++++|++
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            36789999999999999999999999999999999999988888888999989999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |+|||++++++|+.+..|+..+........|+++|+||+|+.+.+.+..++++.++..+++++++|||++|.||+++|.+
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999998888888999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028546          166 IAAALP  171 (207)
Q Consensus       166 l~~~~~  171 (207)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T d1z0ja1         161 ISRRIP  166 (167)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            999885

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=212.47  Aligned_cols=164  Identities=81%  Similarity=1.261  Sum_probs=155.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+|+|.+|+|||||+++|+.+++...+.++.+..........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999988888888888888999999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.+++.+..|+..+......++|++||+||.|+.+......+++..+++.+++++++|||++|.||+++|++|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999988877789999999999998888889999999999999999999999999999999999999


Q ss_pred             cCCC
Q 028546          170 LPGM  173 (207)
Q Consensus       170 ~~~~  173 (207)
                      ++.+
T Consensus       161 l~g~  164 (164)
T d1yzqa1         161 LPGM  164 (164)
T ss_dssp             SCCC
T ss_pred             hCCC
Confidence            8754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-36  Score=213.68  Aligned_cols=162  Identities=39%  Similarity=0.675  Sum_probs=152.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|++|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||++|+.++...+..+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999988889998888888999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++.+++.+..|+..+..... ++|++||+||+|+.+++.+..++++.+++.++++++++||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            999999999999999999887655 6899999999999888899999999999999999999999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       161 ~~l  163 (164)
T d1z2aa1         161 KHL  163 (164)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=214.04  Aligned_cols=164  Identities=39%  Similarity=0.701  Sum_probs=148.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+|+|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+||++|++++...+..+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++++|+.+..|+..+........|++|++||+|+.+++++..++++.+++.+++++++|||++|.||+++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999888777778899999999999888899999999999999999999999999999999999999


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+.+
T Consensus       163 ~i~~  166 (167)
T d1z08a1         163 RMIE  166 (167)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-36  Score=211.86  Aligned_cols=163  Identities=39%  Similarity=0.683  Sum_probs=153.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+++.+|||||++.+..++..+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            48999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      +|++++.++..+.+|+..+.......+|++||+||+|+.+.+++..+++..++..+++++++|||++|.||+++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999999999999998877778999999999999888888899999999999999999999999999999999987


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       165 ~l~  167 (171)
T d2ew1a1         165 RLI  167 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-36  Score=213.28  Aligned_cols=168  Identities=31%  Similarity=0.501  Sum_probs=151.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +.+++||+|+|.+|+|||||+++|+.+.+...+.++.. +.....+.+++..+.+.+||++|++++...+..+++++|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            34569999999999999999999999999887777654 55667888999999999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |+|||++++.+++.+..|+..+.... ..+.|++||+||+|+.+.+....+++..++..+++++++|||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999886654 46789999999999988888889999999999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      +|++.+...+
T Consensus       162 ~l~~~i~k~~  171 (173)
T d2fn4a1         162 QLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999886443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=213.21  Aligned_cols=165  Identities=27%  Similarity=0.395  Sum_probs=144.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      |+.+||+++|++|+|||||+++|+.+.+...+.++.+ .........++..+.+.+||++|++++...+..+++++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            4579999999999999999999999999888888777 445566778888899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEEec
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIETSA  153 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~  153 (207)
                      +|||++++++|+.+..|+.........+.|+++|+||+|+.+.            +.+..+++..++..++ +++++|||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999987666655556667999999999998533            4577888899998875 69999999


Q ss_pred             CCCCChHHHHHHHHHHcCC
Q 028546          154 KAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~  172 (207)
                      ++|.||+++|+.++..+.+
T Consensus       160 k~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTS
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999987753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=209.15  Aligned_cols=162  Identities=36%  Similarity=0.693  Sum_probs=153.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+|+|++|+|||||+++|+++.+...+.++.+.+.......+++..+.+.+||++|++++..++..+++++|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            38999999999999999999999999988888888899999999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||+++.++++.+..|+..+........|+++++||.|+.+......++++.+++.+++++++|||++|.||+++|.+|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998888888999999999999888888888999999999999999999999999999999998


Q ss_pred             Hc
Q 028546          169 AL  170 (207)
Q Consensus       169 ~~  170 (207)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-35  Score=209.29  Aligned_cols=165  Identities=31%  Similarity=0.509  Sum_probs=150.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      ++++||+++|++|+|||||+++|+++.+...+.++.+.. ....+..++..+.+.+||++|.+.+...+..+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            568999999999999999999999999988877777644 4566788999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-ChHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-NIKPLFR  164 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~  164 (207)
                      +|||++++.+|+.+..|+..+.+.. ..+.|+++++||+|+.+.+.+..+++..+++.++++++++||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            9999999999999999999987664 3579999999999999888999999999999999999999999886 9999999


Q ss_pred             HHHHHcCC
Q 028546          165 KIAAALPG  172 (207)
Q Consensus       165 ~l~~~~~~  172 (207)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=1.3e-35  Score=209.72  Aligned_cols=165  Identities=33%  Similarity=0.582  Sum_probs=147.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+|+|++++|||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+||++|+.++..++..+++++|++|
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            4578999999999999999999999999888888877654 456778999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.+++.+..|+..+.... ..++|+++|+||.|+.+.+.+..++++.++..+++++++|||++|.|++++|.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999999887654 467899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |++.+.+
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-36  Score=211.51  Aligned_cols=161  Identities=31%  Similarity=0.424  Sum_probs=132.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.+..+... . +...+.....+.+++..+.+.+||++|++++..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-A-EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-C-Ceeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998876433 2 3333445667788999999999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      |++++.+++.+..|+..+..... ..+|+++|+||+|+.+.+++...+++.++..+++++++|||++|.|++++|.+|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999877654 56899999999999888889999999999999999999999999999999999998


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+..
T Consensus       160 ~i~~  163 (168)
T d2gjsa1         160 QIRL  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=208.65  Aligned_cols=163  Identities=33%  Similarity=0.459  Sum_probs=149.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+.+||+|+|++|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||++|...+..+...++.++|++|
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            4578999999999999999999999999888888887664 467788999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++++|+.+..|+..+..... .++|+++|+||.|+...+++..+++..+++.+++++++|||++|.|++++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999998876654 57899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHc
Q 028546          166 IAAAL  170 (207)
Q Consensus       166 l~~~~  170 (207)
                      |+..+
T Consensus       161 li~~~  165 (167)
T d1xtqa1         161 IILEA  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=209.73  Aligned_cols=164  Identities=28%  Similarity=0.464  Sum_probs=147.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +++||+++|.+|+|||||+++|+.+.+...+.++.+.. ......+++..+.+.+||++|.+.+......+++++|++|+
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeec-cccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            36899999999999999999999999988878877744 45566788988999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG--GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      |||+++++++..+..|+..+.....  .++|+++|+||+|+.+.+++..++++.+++.+++++++|||++|.|++++|+.
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999988766433  57899999999999888899999999999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |++.+.+
T Consensus       160 l~~~~~~  166 (171)
T d2erxa1         160 LLNLEKR  166 (171)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHHH
Confidence            9987753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=211.72  Aligned_cols=170  Identities=30%  Similarity=0.427  Sum_probs=148.0

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccc
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   80 (207)
                      |++.+....+||+|+|.+|+|||||+++|+.+.+...+.++.+ +.....+...+..+.+.+||++|++.+...+..+++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            7777777889999999999999999999999999888778776 445666777888899999999999999999999999


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-Ce
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFG-VM  147 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~  147 (207)
                      ++|++++|||++++++|+.+..|+....+....+.|+++|+||+|+.+            .+.+..+++..++..++ +.
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            999999999999999999876555555444556799999999999864            35677888899999887 69


Q ss_pred             EEEEecCCCCChHHHHHHHHHHcC
Q 028546          148 FIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      |++|||++|.||+++|+.+++++.
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHc
Confidence            999999999999999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-35  Score=206.18  Aligned_cols=165  Identities=41%  Similarity=0.796  Sum_probs=155.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||+++|+.+.+...+.++.+..............+.+.+||++|++.+..++..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999989999999888888899999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||.++.++++.+..|+..+......++|+++|+||+|+.+.+.+..+.+..++..+++++++|||++|.||+++|.+|.
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778899999999999988889999999999999999999999999999999999999


Q ss_pred             HHcCC
Q 028546          168 AALPG  172 (207)
Q Consensus       168 ~~~~~  172 (207)
                      +.+.+
T Consensus       165 ~~i~~  169 (170)
T d1r2qa_         165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            88764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-35  Score=208.39  Aligned_cols=163  Identities=36%  Similarity=0.713  Sum_probs=150.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+|+|++|+|||||+++|+++.+...+.++.+.......+..++..+.+.+||++|++++...+..+++++|++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            48999999999999999999999999988888888888899999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||.++++++..+.+|+..+......++|++||+||+|+.+.+....+........++.++++|||++|.|++++|++|.+
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999999888888999999999999887778888888888889999999999999999999999999


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       164 ~i~  166 (175)
T d2f9la1         164 EIY  166 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-35  Score=206.80  Aligned_cols=163  Identities=36%  Similarity=0.657  Sum_probs=153.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+|+|++|+|||||+++|..+.+...+.++.+.......+..++....+.+||+||++++..++..++.++|++|+|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999988899988888888888899999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||.++++++..+..|+..+......++|+++|+||+|+....+.....+..++..++++++++||++|.|++++|.+|.+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999999999999998888888999999999999888888888889999999999999999999999999999998


Q ss_pred             HcC
Q 028546          169 ALP  171 (207)
Q Consensus       169 ~~~  171 (207)
                      .+.
T Consensus       165 ~i~  167 (174)
T d2bmea1         165 KIL  167 (174)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=207.60  Aligned_cols=164  Identities=35%  Similarity=0.577  Sum_probs=149.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      |+++||+++|++|+|||||+++|+++.+...+.++.+ +.......+++..+.+.+||++|++.+......+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            5789999999999999999999999999888777766 555667788999999999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.++..+..|+..+..... .++|++||+||+|+.+.+.+..+++..++..+++++++|||++|.|++++|++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            99999999999999999998876543 57899999999999888889999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 028546          166 IAAALP  171 (207)
Q Consensus       166 l~~~~~  171 (207)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-35  Score=210.36  Aligned_cols=164  Identities=43%  Similarity=0.764  Sum_probs=125.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+++|.+++|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            38999999999999999999999999888889999999999999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++.+++.+..|+..+......+.|+++|+||.|+........+++...+..+++++++|||++|.|++++|++|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887788999999999999888888888888999999999999999999999999999999


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+.+
T Consensus       166 ~i~~  169 (173)
T d2fu5c1         166 DIKA  169 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-34  Score=205.14  Aligned_cols=162  Identities=37%  Similarity=0.748  Sum_probs=148.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+|+|++|+|||||+++|+++++...+.++.+...........+....+.+||++|++.+...+..++..+|++|+||
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~   83 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY   83 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence            89999999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAAA  169 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (207)
                      |++++.+|+.+..|+..+......++|++||+||+|+...+....++...++..++++++++||++|.|++++|.+|++.
T Consensus        84 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~  163 (173)
T d2a5ja1          84 DITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE  163 (173)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred             eecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988877889999999999998888888999999999999999999999999999999999998


Q ss_pred             cC
Q 028546          170 LP  171 (207)
Q Consensus       170 ~~  171 (207)
                      +.
T Consensus       164 i~  165 (173)
T d2a5ja1         164 IY  165 (173)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-35  Score=206.29  Aligned_cols=163  Identities=33%  Similarity=0.591  Sum_probs=145.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      .++||+|+|.+|+|||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||++|...+......++..+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            459999999999999999999999999888777766 5566777889999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKI  166 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (207)
                      |||.+++.+++.+..|+..+.... ....|++||+||+|+.+.+.+..+++..+++.+++++++|||++|.|++++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998876554 3578999999999998888899999999999999999999999999999999999


Q ss_pred             HHHcC
Q 028546          167 AAALP  171 (207)
Q Consensus       167 ~~~~~  171 (207)
                      ++.+.
T Consensus       163 ~~~i~  167 (171)
T d2erya1         163 VRVIR  167 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-34  Score=203.17  Aligned_cols=164  Identities=44%  Similarity=0.809  Sum_probs=152.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      ..+||+++|++|+|||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|++++...+..++..+|++|+
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46999999999999999999999999999989999988888899999999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC---CCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK---RQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |||.+++.+++.+..|+..+........|+++++||.|+.+.   +.+..+++..+++.++++++++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999999998888877778999999999998543   67788899999999999999999999999999999


Q ss_pred             HHHHHcC
Q 028546          165 KIAAALP  171 (207)
Q Consensus       165 ~l~~~~~  171 (207)
                      .|++.+.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9988765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-34  Score=206.71  Aligned_cols=164  Identities=40%  Similarity=0.671  Sum_probs=154.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+|+|++|+|||||+++|+.+.+...+.++.+.......+.+.+..+.+.+|||||++++..++..+++++|++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            38999999999999999999999999988899999888888899999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||+++++++..+..|+..+......+.|+++|+||.|+.+...+..++...++...++.++++||++|.|++++|++|++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            99999999999999999988877788999999999999988899999999999999999999999999999999999998


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+.+
T Consensus       166 ~i~~  169 (194)
T d2bcgy1         166 QIKE  169 (194)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=204.15  Aligned_cols=164  Identities=30%  Similarity=0.533  Sum_probs=147.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      |+++||+++|.+|+|||||+++|+.+.+...+.++.+.. ....+..++..+.+.+||++|+..+...+..+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE-EEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccc-cceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            568999999999999999999999999998888777744 4556677888899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCChHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-GVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~  164 (207)
                      +|||++++.+|+.+..|+..+.... ..+.|++||+||+|+........++...++.++ ++++++|||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999999999887654 467899999999999888888888888888875 68999999999999999999


Q ss_pred             HHHHHcC
Q 028546          165 KIAAALP  171 (207)
Q Consensus       165 ~l~~~~~  171 (207)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=209.11  Aligned_cols=163  Identities=29%  Similarity=0.547  Sum_probs=141.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|++|+|||||+++|..+.+...+.++.+.++.......++..+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999988899999998888888899889999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||++++++|+.+..|+..+..... ++|+++|+||+|+.......  +...++...+++++++||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~~--~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCTT--TSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhhh--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998877654 69999999999986554432  345667778999999999999999999999999


Q ss_pred             HcCCCc
Q 028546          169 ALPGME  174 (207)
Q Consensus       169 ~~~~~~  174 (207)
                      .+...+
T Consensus       160 ~l~~~~  165 (170)
T d1i2ma_         160 KLIGDP  165 (170)
T ss_dssp             HHHTCT
T ss_pred             HHccCC
Confidence            886443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=203.51  Aligned_cols=162  Identities=30%  Similarity=0.433  Sum_probs=142.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      +.||+|+|++|+|||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999888777765 45556677888899999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (207)
                      ||++++++|+.+..|+..+......++|++||+||+|+.+.            +.+..++...+++.++. ++++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999877666655555667999999999998643            45778888999999885 899999999


Q ss_pred             CCChHHHHHHHHHHcC
Q 028546          156 GFNIKPLFRKIAAALP  171 (207)
Q Consensus       156 ~~~i~~~~~~l~~~~~  171 (207)
                      |.|++++|+.+.+.+.
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=202.55  Aligned_cols=164  Identities=29%  Similarity=0.535  Sum_probs=147.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      |+++||+++|++++|||||+++|+++.+...+.++.+..+.. .+...+..+.+.+||++|.+.+......++..+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            467999999999999999999999999988888888765544 4567888899999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTERG-GDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRK  165 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (207)
                      +|||++++.+++.+..|+..+..... .++|+++|+||+|+. .+....++++.++..+++++++|||++|.|++++|.+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999999877654 568999999999984 5667788899999999999999999999999999999


Q ss_pred             HHHHcCC
Q 028546          166 IAAALPG  172 (207)
Q Consensus       166 l~~~~~~  172 (207)
                      |++.+.+
T Consensus       159 i~~~i~~  165 (166)
T d1ctqa_         159 LVREIRQ  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=199.62  Aligned_cols=163  Identities=42%  Similarity=0.744  Sum_probs=142.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc-cccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      .+||+|+|++++|||||+++|+.+.+... ..++.+.+.....+..++..+.+.+|||||++++..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            58999999999999999999999987544 45556778888888899999999999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIA  167 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (207)
                      |||.+++.++..+..|+..+........|+++|+||.|+.+...+..+++..++..++++++++||++|.|++++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999988888777899999999999988889999999999999999999999999999999999999


Q ss_pred             HHcC
Q 028546          168 AALP  171 (207)
Q Consensus       168 ~~~~  171 (207)
                      +.+.
T Consensus       166 ~~i~  169 (170)
T d2g6ba1         166 KELK  169 (170)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            8764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-34  Score=201.55  Aligned_cols=163  Identities=39%  Similarity=0.755  Sum_probs=145.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+++|.+|+|||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            38999999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFRKIAA  168 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (207)
                      ||.+++.+++.+..|+..+........|++++++|.|+ ..+....+++..++..+++++++||+++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhh-hhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            99999999999999999988888888999999999997 45566688889999999999999999999999999999998


Q ss_pred             HcCC
Q 028546          169 ALPG  172 (207)
Q Consensus       169 ~~~~  172 (207)
                      .+.+
T Consensus       161 ~i~~  164 (166)
T d1g16a_         161 LIQE  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=201.04  Aligned_cols=168  Identities=38%  Similarity=0.682  Sum_probs=153.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      ..+++||+|+|++|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+||+||++++..++..++.++|++
T Consensus         4 ~~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~i   83 (177)
T d1x3sa1           4 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   83 (177)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             ccceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35679999999999999999999999999988888888888888899999999999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |+|||++++.+++.+..|+..+.... ....|+++++||.|. ..+++...+...+++.++++++++||++|.|++++|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          84 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCccccccchhhhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999886644 356889999999997 4567888889999999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      +|++.+....
T Consensus       163 ~l~~~l~~~p  172 (177)
T d1x3sa1         163 ELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHTSG
T ss_pred             HHHHHHccCc
Confidence            9999887554

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=201.76  Aligned_cols=161  Identities=32%  Similarity=0.481  Sum_probs=141.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|++|+|||||+++|+.+.|...+.++.+.++.. .+..++..+.+.+||++|...+. ....+++++|++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            6999999999999999999999999998888888766543 44568888999999999987764 456688999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-ChHHHHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF-NIKPLFRKI  166 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~~l  166 (207)
                      ||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++++.++..+++++++|||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998877665443 3579999999999998888899999999999999999999999998 599999999


Q ss_pred             HHHcC
Q 028546          167 AAALP  171 (207)
Q Consensus       167 ~~~~~  171 (207)
                      ++.+.
T Consensus       160 ~~~i~  164 (168)
T d2atva1         160 CREVR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98774

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-33  Score=201.29  Aligned_cols=166  Identities=30%  Similarity=0.440  Sum_probs=143.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +++++||+|+|.+|+|||||+++|+.+.|...+.++.+ +.....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999888888776 44556677899999999999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEEe
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK------------RQVSIEEGDGKAKEFG-VMFIETS  152 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  152 (207)
                      ++|||++++++|+.+..|+.........++|++||+||+|+.++            ......+...+++.++ ++|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999876554444445557999999999997543            3355667778888877 6999999


Q ss_pred             cCCCCChHHHHHHHHHHcCC
Q 028546          153 AKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~~  172 (207)
                      |++|.||+++|..|++.+..
T Consensus       161 Ak~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCcCHHHHHHHHHHHHcC
Confidence            99999999999999998763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-34  Score=205.13  Aligned_cols=164  Identities=38%  Similarity=0.661  Sum_probs=146.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECC----------eEEEEEEEecCChhhhccccccc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLED----------RTVRLQLWDTAGQERFRSLIPSY   78 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~~~~   78 (207)
                      .+||+++|++|+|||||+++|+++.+...+.++.+.++....+..++          ..+++.+||++|++.+..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            48999999999999999999999999888888888777776665433          34689999999999999999999


Q ss_pred             cccCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q 028546           79 IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGF  157 (207)
Q Consensus        79 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (207)
                      ++++|++|+|||++++.+++.+..|+..+.... ...+|++||+||.|+.+.+++..+++..+++.+++++++|||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999999999998775543 3568899999999998889999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHcCC
Q 028546          158 NIKPLFRKIAAALPG  172 (207)
Q Consensus       158 ~i~~~~~~l~~~~~~  172 (207)
                      |++++|++|.+.+..
T Consensus       165 ~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         165 NVEKAVETLLDLIMK  179 (186)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7e-33  Score=195.03  Aligned_cols=159  Identities=37%  Similarity=0.650  Sum_probs=144.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-ccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~il   87 (207)
                      .+||+++|++|+|||||+++|+.+.+...+.++.+.........+......+.+||++|...+.. .+..+++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999988899988888888888999999999999999877654 56788999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC---CCChHHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKA---GFNIKPLF  163 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  163 (207)
                      |||++++++|+.+..|+..+.+.. ..++|++||+||+|+.+++++..++++.+++.+++++++|||++   ++||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999999999999987764 36799999999999988888999999999999999999999987   55999999


Q ss_pred             HHHH
Q 028546          164 RKIA  167 (207)
Q Consensus       164 ~~l~  167 (207)
                      .+|+
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=197.56  Aligned_cols=165  Identities=31%  Similarity=0.437  Sum_probs=140.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhh-ccccccccccCCEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSSVA   85 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~~   85 (207)
                      ..+||+++|++|+|||||+++|.+..+.. ...++.+.+...+.+.+++..+.+.+||+++.... ..+...+++++|++
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~   81 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccccccccccccccccee
Confidence            35899999999999999999999887653 34456667778888889999999999998753321 12556788999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHHHHH
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |+|||++++.+++.+..|+..+.... ..++|++||+||+|+.+.+++..++++.++..++++++++||++|.|++++|.
T Consensus        82 ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~  161 (172)
T d2g3ya1          82 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE  161 (172)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             eeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHH
Confidence            99999999999999999998887643 35799999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHcCC
Q 028546          165 KIAAALPG  172 (207)
Q Consensus       165 ~l~~~~~~  172 (207)
                      +|++.+..
T Consensus       162 ~l~~~i~~  169 (172)
T d2g3ya1         162 GIVRQVRL  169 (172)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-32  Score=192.22  Aligned_cols=162  Identities=38%  Similarity=0.646  Sum_probs=143.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      -+||+|+|.+++|||||+++|+.+.+...+.++.+...........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         6 ~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~   85 (174)
T d1wmsa_           6 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLT   85 (174)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEE
Confidence            47999999999999999999999999988889888888888888999999999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCChHHHH
Q 028546           89 YDVANRQSFLNTSRWIEEVRTER----GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~  163 (207)
                      +|.+++.+++.+..|+..+....    ....|+++|+||.|+. ++++..++++.++...+ +++++|||++|.||+++|
T Consensus        86 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_          86 FSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            99999999999999998876643    2468999999999984 46788888999998764 799999999999999999


Q ss_pred             HHHHHHcC
Q 028546          164 RKIAAALP  171 (207)
Q Consensus       164 ~~l~~~~~  171 (207)
                      ++|.+.+.
T Consensus       165 ~~l~~~il  172 (174)
T d1wmsa_         165 EEAVRRVL  172 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-33  Score=196.93  Aligned_cols=164  Identities=39%  Similarity=0.659  Sum_probs=129.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEEC-CeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      -+||+++|++|+|||||+++|+++.+...+.++.+........... .....+.+||++|++++...+..+++.+|++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            3899999999999999999999999988877777666655555443 344678999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCC-CCHHHHHHHHHHhC-CeEEEEecCCCCChHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQ-VSIEEGDGKAKEFG-VMFIETSAKAGFNIKP  161 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~  161 (207)
                      |||++++.+|+.+..|+..+.....    .++|+++++||+|+.+.+. +..++++.++..++ +++++|||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998876432    4789999999999976544 67778888888886 7899999999999999


Q ss_pred             HHHHHHHHcCC
Q 028546          162 LFRKIAAALPG  172 (207)
Q Consensus       162 ~~~~l~~~~~~  172 (207)
                      +|++|++.+.+
T Consensus       162 ~f~~l~~~~l~  172 (175)
T d1ky3a_         162 AFEEIARSALQ  172 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-32  Score=194.87  Aligned_cols=164  Identities=38%  Similarity=0.657  Sum_probs=145.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+|+|.+|+|||||+++|+++.+...+.++.+.+.........+..+.+.+||++|...+...+..++..+|+++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999998999999999999999999999999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCChHHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTERG----GDVIIVLVGNKTDLVDKRQVSIEEGDGKAK-EFGVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~  164 (207)
                      |.++..+++.+..|+..+.....    .++|+++|+||+|+.+ ++...+....++. ..++++++|||++|.|++++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999988866532    4689999999999854 4555556655654 4578999999999999999999


Q ss_pred             HHHHHcCCCc
Q 028546          165 KIAAALPGME  174 (207)
Q Consensus       165 ~l~~~~~~~~  174 (207)
                      +|++.+...+
T Consensus       162 ~l~~~i~~~~  171 (184)
T d1vg8a_         162 TIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999876543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-32  Score=194.14  Aligned_cols=162  Identities=27%  Similarity=0.442  Sum_probs=141.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      ++||+++|.+|+|||||+++|+.+.++..+.++.. +.....+.+++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999999888777765 45556677888899999999999999999999999999999999


Q ss_pred             EECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q 028546           89 YDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD------------KRQVSIEEGDGKAKEFGV-MFIETSAKA  155 (207)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (207)
                      ||++++++|+.+..|+.........++|+++|+||+|+.+            .+.+..++...+++.++. .|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988776665555556899999999999853            355788889999998874 899999999


Q ss_pred             CC-ChHHHHHHHHHHcC
Q 028546          156 GF-NIKPLFRKIAAALP  171 (207)
Q Consensus       156 ~~-~i~~~~~~l~~~~~  171 (207)
                      |. +++++|+.++..+.
T Consensus       161 ~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         161 SENSVRDIFHVATLACV  177 (179)
T ss_dssp             BHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            98 59999999998765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4e-31  Score=187.54  Aligned_cols=162  Identities=22%  Similarity=0.388  Sum_probs=133.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +++++||+++|++|+|||||+++|+++.+... .++.+ +...+.+.+++..+.+.+||++|+..+     .+++++|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            45689999999999999999999999998654 34433 444677788999999999999997654     378899999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCh
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRTER---GGDVIIVLVGNKTDLV--DKRQVSIEEGDGKAKE-FGVMFIETSAKAGFNI  159 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  159 (207)
                      |+|||++++++|+.+..|+..+....   ...+|+++|+||.|+.  +.+.+...++..++.. +++++++|||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999998876543   3567999999988874  3456677777777654 5689999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 028546          160 KPLFRKIAAALPGME  174 (207)
Q Consensus       160 ~~~~~~l~~~~~~~~  174 (207)
                      +++|..|++.+...+
T Consensus       155 ~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         155 DRVFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999876544

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=5.3e-31  Score=185.17  Aligned_cols=157  Identities=23%  Similarity=0.348  Sum_probs=128.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +++||+++|++++|||||+++|..+.+...+.++.+.+.  ..+..++  +.+.+||+||+..+...+..++.+++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhc
Confidence            479999999999999999999999999887777766544  3444555  689999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~  161 (207)
                      |||+++.+++.....|+..+.... ..++|+++|+||.|+.+...  ..+.....     ...+++++++|+++|.|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            999999999999988888775543 36799999999999864432  22222221     12355789999999999999


Q ss_pred             HHHHHHHHc
Q 028546          162 LFRKIAAAL  170 (207)
Q Consensus       162 ~~~~l~~~~  170 (207)
                      +|+||++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999999865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=3.6e-30  Score=180.97  Aligned_cols=158  Identities=24%  Similarity=0.374  Sum_probs=123.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +++||+++|++|+|||||+++|.+..+. ...++.+..  ...+...+  +.+.+||+||++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeee--eeeccccc--cceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            4799999999999999999999988764 334544433  34444555  789999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH--H---HhCCeEEEEecCCCCChHH
Q 028546           88 VYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA--K---EFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~---~~~~~~~~~s~~~~~~i~~  161 (207)
                      |+|+++..++.....++..... ....+.|++||+||.|+.+....  .+.....  .   ..++++++|||++|.|+++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            9999999999887777665543 33467999999999998654443  2222221  1   1245789999999999999


Q ss_pred             HHHHHHHHcCC
Q 028546          162 LFRKIAAALPG  172 (207)
Q Consensus       162 ~~~~l~~~~~~  172 (207)
                      +|+||.+++..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1e-30  Score=185.70  Aligned_cols=159  Identities=21%  Similarity=0.351  Sum_probs=124.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      .+.+++||+++|++|+|||||+++|.++.+... .++.+.  ....+...+  +.+.+||++|++.+...+..++..+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~--~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF--NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTE--EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeee--eEEEeccCC--eeEeEeeccccccchhHHHHHhhccce
Confidence            345679999999999999999999999887533 223333  334444454  789999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFN  158 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~  158 (207)
                      +|+|||+++..++..+..|+..+.... ..++|++|++||+|+.++..  ........     ....+++++|||++|.|
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~g  164 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEG  164 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCCC
Confidence            999999999999999888887765443 35789999999999975533  22222211     12345799999999999


Q ss_pred             hHHHHHHHHHHc
Q 028546          159 IKPLFRKIAAAL  170 (207)
Q Consensus       159 i~~~~~~l~~~~  170 (207)
                      ++++|+||.+.+
T Consensus       165 v~e~~~~l~~~i  176 (176)
T d1fzqa_         165 VQDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=9.4e-30  Score=180.24  Aligned_cols=158  Identities=22%  Similarity=0.357  Sum_probs=123.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEE
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   85 (207)
                      +.+++||+++|+++||||||+++|..+.+... .++.+..  ........  +.+.+||+||...+...+..++..++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN--VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE--EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee--EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceE
Confidence            45789999999999999999999998876432 3344333  23333344  6899999999999999999999999999


Q ss_pred             EEEEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCCh
Q 028546           86 VIVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGK-----AKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        86 ilv~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i  159 (207)
                      |+|+|+++.+++..+..|+..+.. ....+.|+++++||+|+.+...  ..++...     +...++.+++|||++|+|+
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv  161 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDGL  161 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence            999999999999998888776654 3346799999999999864432  2222221     1122557899999999999


Q ss_pred             HHHHHHHHHHc
Q 028546          160 KPLFRKIAAAL  170 (207)
Q Consensus       160 ~~~~~~l~~~~  170 (207)
                      +++|+||.+.+
T Consensus       162 ~e~~~~l~~~~  172 (173)
T d1e0sa_         162 YEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=1e-30  Score=186.71  Aligned_cols=161  Identities=22%  Similarity=0.344  Sum_probs=121.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCE
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   84 (207)
                      ...+++||+++|++|||||||+++|.++.+... .++.+..  .......+  +.+.+||+||++.+...+..++.++|+
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~~--~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceE--EEEEeeCC--EEEEEEecccccccchhHHhhhcccee
Confidence            456789999999999999999999998876432 3444333  23333444  689999999999999999999999999


Q ss_pred             EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCC
Q 028546           85 AVIVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGK-----AKEFGVMFIETSAKAGFN  158 (207)
Q Consensus        85 ~ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~  158 (207)
                      +++|+|+++..++.....|+..+... ...+.|++|++||+|+.+...  ..++...     +...++++++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            99999999999999988887665443 346799999999999854322  2333222     122346799999999999


Q ss_pred             hHHHHHHHHHHcCC
Q 028546          159 IKPLFRKIAAALPG  172 (207)
Q Consensus       159 i~~~~~~l~~~~~~  172 (207)
                      ++++|+||.+.+.+
T Consensus       166 v~e~~~~l~~~i~~  179 (182)
T d1moza_         166 ITEGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=166.78  Aligned_cols=154  Identities=19%  Similarity=0.293  Sum_probs=120.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEE
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~   89 (207)
                      +||+++|++|+|||||+++|.++++..........   ..  ..+...+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VE--TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EE--EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EE--EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            69999999999999999999998886553333222   12  22334478999999999999999999999999999999


Q ss_pred             ECCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHH-----HHHHHhCCeEEEEecCCCCChHHHH
Q 028546           90 DVANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGD-----GKAKEFGVMFIETSAKAGFNIKPLF  163 (207)
Q Consensus        90 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~  163 (207)
                      |.++..++..+..|+..+.... ....|+++++||.|+.+....  .+..     .++...++++++|||++|.|++++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH--HHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            9999999999888877765443 367899999999998654322  2222     2223346789999999999999999


Q ss_pred             HHHHHHc
Q 028546          164 RKIAAAL  170 (207)
Q Consensus       164 ~~l~~~~  170 (207)
                      +||.+.+
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=8.4e-26  Score=160.38  Aligned_cols=161  Identities=17%  Similarity=0.134  Sum_probs=112.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhc--------cccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~   80 (207)
                      -.|+|+|.+|+|||||+++|++.... ....+..+.+.........+  ..+.+|||||.....        .....++.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccccc
Confidence            46999999999999999999988653 23344445555555555555  478999999964432        22344578


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCh
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNI  159 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  159 (207)
                      ++|++|||+|++++.+... ..|+..++ ....+.|+++|+||+|+.+..+   +....+...++ ..++++||++|.|+
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~-~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALK-PLVGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHG-GGTTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhhee-ccccchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEecCCCCCH
Confidence            8999999999987543322 33334343 3444689999999999855322   22333334444 47899999999999


Q ss_pred             HHHHHHHHHHcCCCccCc
Q 028546          160 KPLFRKIAAALPGMETLS  177 (207)
Q Consensus       160 ~~~~~~l~~~~~~~~~~~  177 (207)
                      ++++++|.+.+.+.+..+
T Consensus       159 ~~L~~~i~~~lpe~p~~~  176 (178)
T d1wf3a1         159 AELKADLLALMPEGPFFY  176 (178)
T ss_dssp             HHHHHHHHTTCCBCCCSS
T ss_pred             HHHHHHHHHhCCCCCCCC
Confidence            999999999887654443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=7e-26  Score=160.42  Aligned_cols=158  Identities=20%  Similarity=0.291  Sum_probs=116.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .+++||+|+|.+|||||||++++.++++.... ++.+  .........+  +++.+||+++...+...+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            46799999999999999999999998875332 2222  2223333444  68999999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCChH
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRTE-RGGDVIIVLVGNKTDLVDKRQVSIEEGDGKA-----KEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (207)
                      +++|.++..++.....++...... .....|+++|+||+|+.....  ..+.....     ...+++++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            999999988888876655544333 336799999999999854433  22222222     1234679999999999999


Q ss_pred             HHHHHHHHHcC
Q 028546          161 PLFRKIAAALP  171 (207)
Q Consensus       161 ~~~~~l~~~~~  171 (207)
                      ++++||.+++.
T Consensus       166 e~~~~L~~~lk  176 (177)
T d1zj6a1         166 QGLEWMMSRLK  176 (177)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=9e-25  Score=153.12  Aligned_cols=160  Identities=23%  Similarity=0.349  Sum_probs=121.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +++||+++|.+|+|||||+++|.++.+.... ++.+  .........+  +.+.+||.+|...+.......+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            5699999999999999999999999886432 2222  2333334444  689999999999999999999999999999


Q ss_pred             EEECCChHHHHHHHHHHHHH-HHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHH----HHHHhCCeEEEEecCCCCChHHH
Q 028546           88 VYDVANRQSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVDKRQVSIEEGDG----KAKEFGVMFIETSAKAGFNIKPL  162 (207)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~~~i~~~  162 (207)
                      ++|+.+..++.....++... ........|+++++||.|+.+.... .+....    .+...+++++++||++|.|++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-SEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-HHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-HHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            99999888887766654443 3334457899999999998654332 122222    22334578999999999999999


Q ss_pred             HHHHHHHcCCC
Q 028546          163 FRKIAAALPGM  173 (207)
Q Consensus       163 ~~~l~~~~~~~  173 (207)
                      |++|.+.+.++
T Consensus       158 ~~~l~~~l~~k  168 (169)
T d1upta_         158 MEWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999987543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.7e-24  Score=153.76  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=109.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------ccccccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d   83 (207)
                      +|+++|.++||||||+|+|++...........+............ ...+.+||+||......       .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecC-CCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            589999999999999999998776444444444444443333332 24789999999432111       1223467899


Q ss_pred             EEEEEEECCCh--HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChHH
Q 028546           84 VAVIVYDVANR--QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIKP  161 (207)
Q Consensus        84 ~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (207)
                      ++++++|....  ........|+....... .++|+++|+||+|+.++.+  ...........+.+++++||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998753  23333333333321111 2478999999999976543  2333444555688999999999999999


Q ss_pred             HHHHHHHHcCCCccC
Q 028546          162 LFRKIAAALPGMETL  176 (207)
Q Consensus       162 ~~~~l~~~~~~~~~~  176 (207)
                      +++.|.+.+....+.
T Consensus       159 L~~~i~~~l~~~~~~  173 (180)
T d1udxa2         159 LKEALHALVRSTPPP  173 (180)
T ss_dssp             HHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHhhcCCC
Confidence            999999998765443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.5e-23  Score=146.15  Aligned_cols=151  Identities=23%  Similarity=0.265  Sum_probs=115.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYD   90 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d   90 (207)
                      ||+++|++++|||||+++|.++.+... .++..  .........+  ..+.+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~-~~t~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCS--CEEEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCee-eceee--EeEEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            799999999999999999999987532 33333  2333333344  578999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH------------HhCCeEEEEecCCCC
Q 028546           91 VANRQSFLNTSRWIEEVRTER-GGDVIIVLVGNKTDLVDKRQVSIEEGDGKAK------------EFGVMFIETSAKAGF  157 (207)
Q Consensus        91 ~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~~~  157 (207)
                      .++..++.....++....... ..+.|++++++|.|+....  ...+......            ...+.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999988888777766654433 3678999999999985432  2333322221            123468999999999


Q ss_pred             ChHHHHHHHHH
Q 028546          158 NIKPLFRKIAA  168 (207)
Q Consensus       158 ~i~~~~~~l~~  168 (207)
                      |++|+|+||.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=9.9e-25  Score=152.19  Aligned_cols=151  Identities=20%  Similarity=0.247  Sum_probs=111.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc--------ccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR   80 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   80 (207)
                      +||+++|.+++|||||+++|++.... ....++.+.+.....+...+  ..+.++|+||..+...        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987764 33344555555555566666  5788999999543222        2334578


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      .+|++++++|..+..+++....|...+.. .....|+++|+||+|+.++....       ....+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~iilv~NK~Dl~~~~~~~-------~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh-cccccceeeccchhhhhhhHHHH-------HHhCCCcEEEEECCCCCCHH
Confidence            89999999999987776666655555543 34468999999999986543221       11235689999999999999


Q ss_pred             HHHHHHHHHc
Q 028546          161 PLFRKIAAAL  170 (207)
Q Consensus       161 ~~~~~l~~~~  170 (207)
                      +++++|.+.+
T Consensus       152 ~L~~~l~~~l  161 (161)
T d2gj8a1         152 VLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999864

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=3.1e-24  Score=152.35  Aligned_cols=161  Identities=20%  Similarity=0.191  Sum_probs=108.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-------ccccceeeeEEEEEECCeEEEEEEEecCChhhhcccccccc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   79 (207)
                      .+.++|+++|++++|||||+|+|++.......       ....+.......+...+  ..+.++|+||+.++.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            57799999999999999999999864332111       11222222223333444  5788999999999988888888


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH----hCCeEEEEec
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKE----FGVMFIETSA  153 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~s~  153 (207)
                      ..+|++++|+|+.++...+.. ..+..+...   ++|+++|+||+|+.+..+..  ....+.+...    .+.+++++||
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~-~~~~~~~~~---~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA  156 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTG-EHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  156 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             hhccccccccccccccchhhh-hhhhhhhhc---CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence            999999999999975433222 222223322   58999999999986543321  1111222222    1358999999


Q ss_pred             CCCCChHHHHHHHHHHcCCC
Q 028546          154 KAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       154 ~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ++|.|++++++.|.+.+.+.
T Consensus       157 ~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         157 KTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHHHS
T ss_pred             cCCcCHHHHHHHHHhcCCcc
Confidence            99999999999999987643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.7e-24  Score=151.30  Aligned_cols=155  Identities=18%  Similarity=0.229  Sum_probs=113.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +++||+++|..|+|||||+++|....+++..     +  ....+....  +.+.+||++|+..++..+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~-----~--~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTG-----I--VETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCS-----E--EEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcc-----E--EEEEEEeee--eeeeeeccccccccccchhhcccCCceeee
Confidence            5799999999999999999999887765332     2  222333444  689999999999999999999999999999


Q ss_pred             EEECCChHHH-----------HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC---------------CCCHHHH-HHH
Q 028546           88 VYDVANRQSF-----------LNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR---------------QVSIEEG-DGK  140 (207)
Q Consensus        88 v~d~~~~~s~-----------~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~---------------~~~~~~~-~~~  140 (207)
                      |+|.++..++           +....|...+........|+++++||.|+...+               ....... ...
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            9999976654           234445555555556789999999999963211               1111221 111


Q ss_pred             HHHh----------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          141 AKEF----------GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       141 ~~~~----------~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ...+          .+.+++|||+++.||+++|+.+.+.+.
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            1111          235678999999999999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1e-24  Score=157.14  Aligned_cols=158  Identities=17%  Similarity=0.149  Sum_probs=121.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +++||+++|..|||||||+++|..+.+.  +.||.+.+.  ..+....  +.+.+||++|+..++..+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE--YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE--EEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE--EEEeccc--eeeeeccccccccccccccccccccceeeE
Confidence            5799999999999999999999988774  456666543  3333343  689999999999999999999999999999


Q ss_pred             EEECCCh-----------HHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC----------------CCCHHHHHHH
Q 028546           88 VYDVANR-----------QSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR----------------QVSIEEGDGK  140 (207)
Q Consensus        88 v~d~~~~-----------~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~  140 (207)
                      ++|.++.           ..++....|...+......+.|+++++||.|+.+.+                .........+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            9999874           345567778888877777789999999999974321                1122222222


Q ss_pred             HH----H------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          141 AK----E------FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       141 ~~----~------~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ..    .      ..+.++++||++|.|++++|+.|.+.+.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            11    1      1244789999999999999999988775

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=7.9e-23  Score=145.20  Aligned_cols=157  Identities=22%  Similarity=0.260  Sum_probs=112.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   86 (207)
                      .++.||+++|++|||||||+++|.++.+... .++.+.  ....+..++  ..+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHP--TSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCC--SCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-eccccc--ceeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            5679999999999999999999999887543 233222  223445555  46889999999999999999999999999


Q ss_pred             EEEECCChHHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------hCCeE
Q 028546           87 IVYDVANRQSFLNTSRWIEEVRT-ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE-----------------FGVMF  148 (207)
Q Consensus        87 lv~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (207)
                      +++|+++...+.....++..... ....+.|+++++||.|+...  .....+......                 .++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999998888876655544433 33467999999999998543  223333333221                 13468


Q ss_pred             EEEecCCCCChHHHHHHHHHHc
Q 028546          149 IETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      ++|||++|+|++|+|+||.+.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999875

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.7e-22  Score=143.94  Aligned_cols=160  Identities=23%  Similarity=0.246  Sum_probs=106.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc------------c
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------------L   74 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------~   74 (207)
                      ..+||+|+|++++|||||+|+|++.... ....+..+.......+..++  ..+.++|+||......            .
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHH
Confidence            3599999999999999999999987652 23334444444455566666  4688889999643222            2


Q ss_pred             cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEE
Q 028546           75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF-----GVMFI  149 (207)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (207)
                      ....+..+|++++|+|++.+..-+ ...++..+...   +.|+++|+||+|+....+....+........     ..+++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  160 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR---GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  160 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc---CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEE
Confidence            233467899999999998643322 23333333333   5899999999998766655555444333332     34799


Q ss_pred             EEecCCCCChHHHHHHHHHHcCCC
Q 028546          150 ETSAKAGFNIKPLFRKIAAALPGM  173 (207)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~~~~~  173 (207)
                      ++||++|.|+++++++|.+.+.++
T Consensus       161 ~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         161 FTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhC
Confidence            999999999999999998876543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=7.1e-23  Score=144.13  Aligned_cols=155  Identities=18%  Similarity=0.180  Sum_probs=98.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------ccccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   80 (207)
                      .|+++|++|+|||||+++|++.... ....+..+.......+....  +.+.+||++|....         ......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            5899999999999999999987653 23333444344444444454  57899999994321         222344467


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      .+|+++++.|.++...... ..++..+...   ++|+++|+||+|+.++.+  .+....+.+....+++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREFE--REVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHHH--HHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhhh--hHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999986443322 3444444443   589999999999854321  111122222223478999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 028546          161 PLFRKIAAALPGM  173 (207)
Q Consensus       161 ~~~~~l~~~~~~~  173 (207)
                      +++++|.+.+.+.
T Consensus       154 ~L~~~i~~~l~e~  166 (171)
T d1mkya1         154 TMLETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999987644

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=8.9e-23  Score=145.13  Aligned_cols=150  Identities=23%  Similarity=0.309  Sum_probs=99.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh---------------hcccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------FRSLI   75 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~~~   75 (207)
                      .|+++|.+|+|||||+|+|++.++.....++.+.+..  .+...    .+.++|+||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999998876555565554432  22233    357899999411               11223


Q ss_pred             ccccccCCEEEEEEECCChHHHHHH----------HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNT----------SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG  145 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~----------~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (207)
                      ...++.+|++++|+|+.........          ...+..+..   .++|+++|+||+|+.+..+...   ......+.
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~~~~---~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQEVI---NFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHHHHH---HHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHHHHH---HHHHHHhc
Confidence            3446789999999999853222111          112222322   2689999999999865433211   22222222


Q ss_pred             -------CeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          146 -------VMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       146 -------~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                             ..++++||++|.|+++++++|.+.+.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                   248899999999999999999998764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=1.3e-22  Score=141.22  Aligned_cols=149  Identities=20%  Similarity=0.257  Sum_probs=103.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCChhhhc---------ccccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI   79 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   79 (207)
                      +||+++|.+++|||||+|+|++.... ....+..+.......+...+  ..+.+||+||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999987653 33444555555555566666  578899999943211         1112235


Q ss_pred             ccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCh
Q 028546           80 RDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNI  159 (207)
Q Consensus        80 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (207)
                      ..+|++++|+|++++...+...-+ ..+     ...++++++||+|+.+...  .++... ....+.+++++||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~-----~~~~~i~~~~k~d~~~~~~--~~~~~~-~~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI-----KNKRYLVVINKVDVVEKIN--EEEIKN-KLGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH-----TTSSEEEEEEECSSCCCCC--HHHHHH-HHTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc-----ccccceeeeeeccccchhh--hHHHHH-HhCCCCcEEEEECCCCCCH
Confidence            789999999999986654443222 111     1478999999999865433  322222 2223568999999999999


Q ss_pred             HHHHHHHHHH
Q 028546          160 KPLFRKIAAA  169 (207)
Q Consensus       160 ~~~~~~l~~~  169 (207)
                      ++++++|.+.
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=8e-22  Score=141.87  Aligned_cols=156  Identities=19%  Similarity=0.243  Sum_probs=106.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV   88 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv   88 (207)
                      .+||+++|.+|||||||+++|.   +...+.||.+..  ...+....  +.+.+||++|++.++..+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~--~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIH--EYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEE--EEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeE--EEEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   444556666654  34455555  6899999999999999999999999999999


Q ss_pred             EECCCh----------HHHHHHHHHHHHH-HHhcCCCCeEEEEEeCCCCCCCC----------------CCCHHHHHHHH
Q 028546           89 YDVANR----------QSFLNTSRWIEEV-RTERGGDVIIVLVGNKTDLVDKR----------------QVSIEEGDGKA  141 (207)
Q Consensus        89 ~d~~~~----------~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~  141 (207)
                      +|.++.          ..++....++..+ ......++|++|++||.|+.+..                .-..+.+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            999873          2344444444444 33344689999999999974321                01122332222


Q ss_pred             HHh-----------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          142 KEF-----------GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       142 ~~~-----------~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ...           .+.++++||+++.+|+++|+.+.+.+.
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            211           244678999999999999999887653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.5e-22  Score=143.05  Aligned_cols=158  Identities=16%  Similarity=0.087  Sum_probs=102.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccc-------cccccccCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSS   83 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d   83 (207)
                      +|+++|++++|||||+|+|++........+..+.+.......+.+. ..+.+|||||..+....       ....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            6899999999999999999987764443444444444444444433 26889999996432221       122346789


Q ss_pred             EEEEEEECCChHHHHH--HHHHHHHHHH---hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCC
Q 028546           84 VAVIVYDVANRQSFLN--TSRWIEEVRT---ERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEF--GVMFIETSAKAG  156 (207)
Q Consensus        84 ~~ilv~d~~~~~s~~~--~~~~~~~i~~---~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~  156 (207)
                      .++++++.........  ...+......   ....++|+++|+||+|+.+..+    ..+.+...+  +.+++++||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE----NLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH----HHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHH----HHHHHHHHhccCCcEEEEECCCC
Confidence            9988887764221111  1111111111   1224689999999999865432    223333333  578999999999


Q ss_pred             CChHHHHHHHHHHcCCC
Q 028546          157 FNIKPLFRKIAAALPGM  173 (207)
Q Consensus       157 ~~i~~~~~~l~~~~~~~  173 (207)
                      .|+++++++|.+.+.+.
T Consensus       158 ~Gi~~L~~~i~~~L~~~  174 (185)
T d1lnza2         158 EGLRELLFEVANQLENT  174 (185)
T ss_dssp             STTHHHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHhhhhC
Confidence            99999999999998653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.87  E-value=2.6e-21  Score=138.87  Aligned_cols=163  Identities=19%  Similarity=0.180  Sum_probs=107.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC---Cccccccceeee--EEEEE-------------------ECCeEEEEEE
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---TTYQATIGIDFL--SKTMY-------------------LEDRTVRLQL   62 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~---~~~~~~~~~~~~--~~~~~-------------------~~~~~~~~~i   62 (207)
                      .+.++|+++|+.++|||||+++|++....   ....+..+.+..  .....                   .......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            35689999999999999999999864332   111122221111  11110                   1122457999


Q ss_pred             EecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHH
Q 028546           63 WDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGK  140 (207)
Q Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~  140 (207)
                      +|+||+.+|.......+..+|++++|+|+.++.......+.+..+....  ..++++++||+|+.++....  ......+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999888888899999999999997532232333333333332  24588899999987653321  2222223


Q ss_pred             HHHh---CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          141 AKEF---GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       141 ~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ....   +++++++||++|+|+++|++.+.+.++
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            2222   357999999999999999999988764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.86  E-value=4.5e-22  Score=146.11  Aligned_cols=157  Identities=18%  Similarity=0.178  Sum_probs=101.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEE----------------EECCeEEEEEEEecCChhhhcccc
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTM----------------YLEDRTVRLQLWDTAGQERFRSLI   75 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   75 (207)
                      |+|+|++++|||||+++|++...........+.+......                .+......+.++||||+.+|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998643221111111111111111                112233478999999999998888


Q ss_pred             ccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--------------------H
Q 028546           76 PSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--------------------E  135 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--------------------~  135 (207)
                      ...+..+|++|+|+|+.++-.... ...+..+...   ++|+++++||+|+.+......                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888899999999999986433332 2233333332   589999999999875432210                    0


Q ss_pred             HH----HHHHHH--------------hCCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          136 EG----DGKAKE--------------FGVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       136 ~~----~~~~~~--------------~~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ..    ..+...              ...+++++||.+|.|++++++.|....++
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            00    000000              01368999999999999999999887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.86  E-value=1.4e-21  Score=139.87  Aligned_cols=159  Identities=16%  Similarity=0.117  Sum_probs=109.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC----------------CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD----------------KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      +.++|+++|+.++|||||+++|++.                ....++.++.+++.....+...+  ..+.++||||+.+|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHH
Confidence            4589999999999999999999741                12233344445554444444444  57899999999999


Q ss_pred             ccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC---HHHHHHHHHHhC---
Q 028546           72 RSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS---IEEGDGKAKEFG---  145 (207)
Q Consensus        72 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~---  145 (207)
                      .......+..+|++|+|+|+.++..-++ .+.+..+... + ..|+||++||+|+.++.+..   ..++..+...++   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~-~-~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI-G-VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT-T-CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHh-c-CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            8888888899999999999997533222 2222223222 2 35799999999987543321   112333333333   


Q ss_pred             --CeEEEEecCCC----------CChHHHHHHHHHHcC
Q 028546          146 --VMFIETSAKAG----------FNIKPLFRKIAAALP  171 (207)
Q Consensus       146 --~~~~~~s~~~~----------~~i~~~~~~l~~~~~  171 (207)
                        ++++++|+++|          .++.++++.|.+.++
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence              56999999998          488889988877664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.4e-20  Score=134.95  Aligned_cols=119  Identities=21%  Similarity=0.296  Sum_probs=86.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc-cccccccccCCEEEEEE
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVIVY   89 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~ilv~   89 (207)
                      +|+++|++++|||||+++|+++.+.... ++.+.+.....+ .+...+.+.+||++|+++++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6899999999999999999998886543 444433322222 23445689999999998875 46678889999999999


Q ss_pred             ECCChHHH-HHHHHHHHHHH-H--hcCCCCeEEEEEeCCCCCCCCC
Q 028546           90 DVANRQSF-LNTSRWIEEVR-T--ERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        90 d~~~~~s~-~~~~~~~~~i~-~--~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      |+++..++ ....+++..+. .  .....+|++|++||+|+..+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            99986653 44444444432 2  2234689999999999975443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=1.8e-20  Score=135.46  Aligned_cols=163  Identities=18%  Similarity=0.143  Sum_probs=103.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcc---ccccceee--eEEEEE------------------------ECCeEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTY---QATIGIDF--LSKTMY------------------------LEDRTV   58 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~---~~~~~~~~--~~~~~~------------------------~~~~~~   58 (207)
                      +.++|+++|+..+|||||+++|++.......   ......+.  ....+.                        ......
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            3489999999999999999999863321110   00000000  000000                        011234


Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--HH
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--EE  136 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~  136 (207)
                      .+.++|+||+.+|.......+..+|++|+|+|+.++-.-...++.+..+... + ..|++|++||+|+.++.+...  ..
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~-i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-G-VKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-T-CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-C-CceeeeccccCCCccchHHHHHHHH
Confidence            7899999999999888888888999999999998642111222223323222 2 358899999999976543211  11


Q ss_pred             HHHHHHHh---CCeEEEEecCCCCChHHHHHHHHHHcCC
Q 028546          137 GDGKAKEF---GVMFIETSAKAGFNIKPLFRKIAAALPG  172 (207)
Q Consensus       137 ~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~~~~  172 (207)
                      ...+....   +++++++||++|.|++++++.|.+.+++
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            22222222   3689999999999999999999988763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.2e-20  Score=135.38  Aligned_cols=154  Identities=14%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh-------------ccccc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------------RSLIP   76 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~   76 (207)
                      .+|+|+|.+|||||||+|+|++...........+............   .+.+.|+++....             .....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            4899999999999999999998654212122222111222222232   3455677662211             11122


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----hCCeEEEEe
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE----FGVMFIETS  152 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s  152 (207)
                      ..+..+|++++++|++++..- ....++..+...   .+|+++|+||+|+....+.. +........    .+.+++++|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhccccccc-cccccccccccc---cCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEEe
Confidence            334567999999999864321 223344444433   58999999999986544322 112222222    345799999


Q ss_pred             cCCCCChHHHHHHHHHHcC
Q 028546          153 AKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~~~~  171 (207)
                      |.+|.|+++++++|.+.+.
T Consensus       176 A~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHhC
Confidence            9999999999999998864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.8e-20  Score=131.46  Aligned_cols=160  Identities=18%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccc-cccceeeeEEEEEECCeEEEEEEEecCChhh---------hccccccccc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYIR   80 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~~   80 (207)
                      .|+++|.+++|||||+|+|++.+...... ...+..........+.  ..+..+|++|...         ..........
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            58999999999999999999877643322 2333232333333344  3567788887432         1222233445


Q ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCh
Q 028546           81 DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFG-VMFIETSAKAGFNI  159 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  159 (207)
                      .+++++++.|..+....  ...+...+..   ...|.++++||.|..................++ .+++++||++|.|+
T Consensus        85 ~~~~~l~~~d~~~~~~~--~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          85 DVELVIFVVEGTRWTPD--DEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             CEEEEEEEEETTCCCHH--HHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             hcceeEEEEecCccchh--HHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            78888999998753322  2222233332   257889999999987654433344444444555 48999999999999


Q ss_pred             HHHHHHHHHHcCCCccCc
Q 028546          160 KPLFRKIAAALPGMETLS  177 (207)
Q Consensus       160 ~~~~~~l~~~~~~~~~~~  177 (207)
                      ++++++|.+.+++....+
T Consensus       160 ~~L~~~i~~~lpe~~~~y  177 (179)
T d1egaa1         160 DTIAAIVRKHLPEATHHF  177 (179)
T ss_dssp             HHHHHHHHTTCCBCCCSS
T ss_pred             HHHHHHHHHhCCCCCCCC
Confidence            999999999987765544

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=6.7e-21  Score=139.26  Aligned_cols=156  Identities=17%  Similarity=0.209  Sum_probs=111.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccccccCCEEEE
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI   87 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~il   87 (207)
                      +.+||+++|+.|||||||+++|..+.+    .||.++  ....+.+++  +.+.+||++|+..++..|..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            358999999999999999999986654    345553  444556666  689999999999999999999999999999


Q ss_pred             EEECCChH----------HHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC----C--------------------
Q 028546           88 VYDVANRQ----------SFLN-TSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ----V--------------------  132 (207)
Q Consensus        88 v~d~~~~~----------s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~----~--------------------  132 (207)
                      ++|.++..          .+.. ...|...+......++|++|++||+|+.+++.    .                    
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            99998532          2333 33344444444446799999999999753211    0                    


Q ss_pred             ------CHHHHHHH-----HHHh--------CCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          133 ------SIEEGDGK-----AKEF--------GVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       133 ------~~~~~~~~-----~~~~--------~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                            ....+..+     .+..        .+-++++||.++.+++.+|+.+.+.+.
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~  214 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  214 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence                  01122111     1111        123568999999999999988876654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=7.3e-21  Score=137.14  Aligned_cols=143  Identities=20%  Similarity=0.154  Sum_probs=96.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC-----------------CCCCccccccceeeeEEEEEECCeEEEEEEEecCChhh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYD-----------------KFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   70 (207)
                      +.++|+++|++++|||||+++|++.                 ..+++..+..+++.....+..++  .++.|+||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            4599999999999999999999621                 11122233555666666666666  5788999999999


Q ss_pred             hccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC-
Q 028546           71 FRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVI-IVLVGNKTDLVDKRQVS---IEEGDGKAKEFG-  145 (207)
Q Consensus        71 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~-  145 (207)
                      |.......+..+|++|+|+|+.++-..++.. .+..+...   ++| ++|++||+|+.+..+..   ..++..+...++ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            9998888889999999999999765444433 22333322   354 78889999986543321   122233333332 


Q ss_pred             ----CeEEEEecCCC
Q 028546          146 ----VMFIETSAKAG  156 (207)
Q Consensus       146 ----~~~~~~s~~~~  156 (207)
                          +++++.|+..+
T Consensus       156 ~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         156 PGDEVPVIRGSALLA  170 (204)
T ss_dssp             CTTTSCEEECCHHHH
T ss_pred             Ccccceeeeeechhh
Confidence                46888887643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.79  E-value=3.9e-19  Score=129.35  Aligned_cols=154  Identities=20%  Similarity=0.207  Sum_probs=100.0

Q ss_pred             CCCCCCCceeEEEEcCCCCCHHHHHHHHhcCC--CC-------------------------------CccccccceeeeE
Q 028546            2 ASVSPLAKYKLVFLGDQSVGKTSIITRFMYDK--FD-------------------------------TTYQATIGIDFLS   48 (207)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~   48 (207)
                      +..+....++|+++|+..+|||||+++|+...  +.                               .+.....+++...
T Consensus         2 ~~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~   81 (222)
T d1zunb3           2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   81 (222)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             cccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE
Confidence            34566667999999999999999999996311  10                               1111222333333


Q ss_pred             EEEEECCeEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028546           49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVD  128 (207)
Q Consensus        49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~  128 (207)
                      ..+...+  ..+.++|+||+.+|.......+..+|++|+|+|+.++-.-+.  .....+....+ -..+++++||+|+.+
T Consensus        82 ~~~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt--~e~~~~~~~~g-v~~iiv~vNK~D~~~  156 (222)
T d1zunb3          82 RYFSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLLG-IKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEEECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHTT-CCEEEEEEECTTTTT
T ss_pred             EEEeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccch--HHHHHHHHHcC-CCEEEEEEEcccccc
Confidence            3333344  578999999999998888888899999999999986432222  22222222322 234899999999976


Q ss_pred             CCCCCHHH----HHHHHHHhC-----CeEEEEecCCCCChH
Q 028546          129 KRQVSIEE----GDGKAKEFG-----VMFIETSAKAGFNIK  160 (207)
Q Consensus       129 ~~~~~~~~----~~~~~~~~~-----~~~~~~s~~~~~~i~  160 (207)
                      ..+.....    +..+....+     ++++++||++|+|+.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            54433332    233444443     367999999999983

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.3e-18  Score=127.97  Aligned_cols=150  Identities=17%  Similarity=0.199  Sum_probs=101.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC--CC-----------------------------CCccccccceeeeEEEEEECCeE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD--KF-----------------------------DTTYQATIGIDFLSKTMYLEDRT   57 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~   57 (207)
                      .++|+++|+.++|||||+.+|+..  .+                             ..++.+..+++.....+...+  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            489999999999999999999621  00                             122334556666566666666  


Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHH-----HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQS-----FLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQV  132 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s-----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~  132 (207)
                      .+++|+||||+.+|...+...+..+|++|+|+|+....-     .+.+......+....+ -.+++|++||+|+.+....
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~g-v~~iiv~iNKmD~~~~d~~  162 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG-VRQLIVAVNKMDSVKWDES  162 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT-CCEEEEEEECGGGGTTCHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcC-CCeEEEEEECCCCCCCCHH
Confidence            689999999999999998888999999999999985321     0111111112222222 2358899999998765443


Q ss_pred             CHHH----HHHHHHHhC-----CeEEEEecCCCCChHH
Q 028546          133 SIEE----GDGKAKEFG-----VMFIETSAKAGFNIKP  161 (207)
Q Consensus       133 ~~~~----~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (207)
                      .+++    ...+....+     ++++++|+..|.|+-+
T Consensus       163 ~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         163 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            3322    233343333     4689999999998644

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=4e-17  Score=121.63  Aligned_cols=114  Identities=19%  Similarity=0.307  Sum_probs=85.4

Q ss_pred             Cce-eEEEEcCCCCCHHHHHHHHhcC--CC----------------CCccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            8 AKY-KLVFLGDQSVGKTSIITRFMYD--KF----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         8 ~~~-~i~v~G~~~sGKStli~~l~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      .++ +|+++|+.++|||||+.+++..  ..                +.+..+..++......+.+++  .+++++||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            344 7999999999999999999621  10                223334555666666777777  57999999999


Q ss_pred             hhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           69 ERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        69 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      .+|.......+..+|++|+|+|+.++-...+..-|. ....+   ++|.++++||+|..
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~~~---~lP~i~fINKmDr~  136 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY---KVPRIAFANKMDKT  136 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHHTT---TCCEEEEEECTTST
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHH-HHHHc---CCCEEEEEeccccc
Confidence            999999999999999999999999765555544443 33333   69999999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5.8e-18  Score=122.16  Aligned_cols=116  Identities=18%  Similarity=0.263  Sum_probs=82.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhccccccc----cccCCE
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY----IRDSSV   84 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d~   84 (207)
                      +..|+++|++++|||||+|+|+++.+.    ++++.......+..++  ..+.+||+||+..+...+..+    +..++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            458999999999999999999998764    3333333333333333  578999999988776655444    455689


Q ss_pred             EEEEEECCC-hHHHHHHHHHH----HHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           85 AVIVYDVAN-RQSFLNTSRWI----EEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        85 ~ilv~d~~~-~~s~~~~~~~~----~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      +++++|+.+ ..+++....|+    ..+......++|+++++||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            999999764 44455554444    34445555789999999999986543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.72  E-value=9.2e-17  Score=119.36  Aligned_cols=111  Identities=14%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC--C----------------CCccccccceeeeEEEEEECCeEEEEEEEecCChhhhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK--F----------------DTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   72 (207)
                      +|+++|+.++|||||+.+++...  .                +.+..+..++......+.+++  .+++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            69999999999999999996211  1                011223445555556677777  578999999999999


Q ss_pred             cccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           73 SLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        73 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ......+..+|++|+|+|+.++-......-|. .+...   ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---cccccccccccccc
Confidence            99999999999999999999765555544443 33333   58999999999963

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.1e-17  Score=116.93  Aligned_cols=166  Identities=14%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             CCCCCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhhcc-------
Q 028546            1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------   73 (207)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------   73 (207)
                      |++.+....++|+++|.+++|||||+|+|.+.+.........+................+..++.++......       
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence            3556777789999999999999999999998776433222222222222222222221222222222111111       


Q ss_pred             c---cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHh--CC
Q 028546           74 L---IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEF--GV  146 (207)
Q Consensus        74 ~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~  146 (207)
                      .   ........+.++.+.+...... .....++..+...   ..++++++||+|+.+.....  .+...+....+  ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~  163 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  163 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             hhhhhhhhhhheeEEEEeecccccch-hHHHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence            1   1111233445666666664322 2223333333333   57899999999986543322  11222222222  34


Q ss_pred             eEEEEecCCCCChHHHHHHHHHHc
Q 028546          147 MFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      +++++||++|.|++++++.|.+.+
T Consensus       164 ~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         164 QVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cEEEEeCCCCCCHHHHHHHHHHHh
Confidence            789999999999999999987654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=8e-18  Score=122.88  Aligned_cols=149  Identities=17%  Similarity=0.251  Sum_probs=92.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------CCccccccceeeeEEEEEECCe
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDK--F-----------------------------DTTYQATIGIDFLSKTMYLEDR   56 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   56 (207)
                      +.++|+++|+.++|||||+.+|+...  .                             ..+..+..+++.....+..++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            36899999999999999999986310  0                             112223333443334444444 


Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHH------HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFL------NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                       ..+.++||||+.+|.......+.-+|++|+|+|+.++..-.      ...+-+... ...+ ..++++++||+|+....
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~~~-~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KTMG-LDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HHTT-CTTCEEEEECGGGSSST
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HHhC-CCceEEEEEcccCCCcc
Confidence             67999999999999999999999999999999999742211      111111111 1222 35688999999986432


Q ss_pred             CC--CHHH----HHHHHHHh-----CCeEEEEecCCCCChH
Q 028546          131 QV--SIEE----GDGKAKEF-----GVMFIETSAKAGFNIK  160 (207)
Q Consensus       131 ~~--~~~~----~~~~~~~~-----~~~~~~~s~~~~~~i~  160 (207)
                      ..  ..+.    +..+...+     .++++++||..|.|+.
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence            11  1222    22233333     3468999999999974

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.69  E-value=4.1e-17  Score=120.35  Aligned_cols=153  Identities=18%  Similarity=0.207  Sum_probs=82.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------CCccccccceeeeEEEEEECCe
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDK--F-----------------------------DTTYQATIGIDFLSKTMYLEDR   56 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   56 (207)
                      ..++|+++|+.++|||||+.+|+...  +                             ..+..+..+++.....+...+ 
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-  101 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-  101 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc-
Confidence            35799999999999999999995210  0                             111122223333333333444 


Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHH-----H-HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSF-----L-NTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-----~-~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                       ..+.++|+||+..|.......+..+|++++|+|+.++..-     . ...+.+..+. ..+ -.++++++||+|+....
T Consensus       102 -~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~-~~~-i~~iiv~iNKmD~~~~~  178 (245)
T d1r5ba3         102 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG-INHLVVVINKMDEPSVQ  178 (245)
T ss_dssp             -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT-CSSEEEEEECTTSTTCS
T ss_pred             -ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHH-HcC-CCeEEEEEEcCCCCccc
Confidence             4789999999999999888888999999999999864211     0 1122222222 222 23488999999986332


Q ss_pred             --CCCHHHH----HHHHHHh-------CCeEEEEecCCCCChHHHHH
Q 028546          131 --QVSIEEG----DGKAKEF-------GVMFIETSAKAGFNIKPLFR  164 (207)
Q Consensus       131 --~~~~~~~----~~~~~~~-------~~~~~~~s~~~~~~i~~~~~  164 (207)
                        +....++    ......+       .++++++||++|+|+.++++
T Consensus       179 ~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         179 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence              2112222    2222222       24799999999999966543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=5.4e-15  Score=109.78  Aligned_cols=126  Identities=10%  Similarity=0.048  Sum_probs=81.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccccceeeeEEEEEECCeEEEEEEEecCChhhhcccc-------c--
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDT-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------P--   76 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~--   76 (207)
                      ..+++|+++|.+|+|||||+|++++..... ...+..+.+........++  ..+.|+||||..+.....       .  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            457999999999999999999999877543 3334445555555566676  479999999954321111       1  


Q ss_pred             cccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCCCCCCH
Q 028546           77 SYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGG--DVIIVLVGNKTDLVDKRQVSI  134 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~~~~~~  134 (207)
                      ......|+++||++++...--......+..+...++.  -.+++||+||.|...+.....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence            1124578999999887421111122333334433332  246899999999876655544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.2e-15  Score=116.94  Aligned_cols=158  Identities=14%  Similarity=0.120  Sum_probs=94.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----ccceeeeEEEEEECCeEEEEEEEecCChhhhcccc-----cc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQA-----TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----PS   77 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~   77 (207)
                      .+++|+|+|.+|+|||||+|+|+|.........     .++.+...  ....+ ..++.+|||||........     ..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSS-CTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eeccC-CCeEEEEeCCCcccccccHHHHHHHh
Confidence            359999999999999999999998654322211     11222111  11222 1258899999965433222     22


Q ss_pred             ccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-------CCCCHHH----H----HHHHH
Q 028546           78 YIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK-------RQVSIEE----G----DGKAK  142 (207)
Q Consensus        78 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~----~----~~~~~  142 (207)
                      .+..+|++|++.|..-...   -..++..+...   ++|+++|+||+|....       .....+.    +    .....
T Consensus       132 ~~~~~d~~l~~~~~~~~~~---d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKKN---DIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             TGGGCSEEEEEESSCCCHH---HHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCHH---HHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            3567899988887542221   22333444433   5899999999995311       1111111    1    11122


Q ss_pred             HhC---CeEEEEecCCC--CChHHHHHHHHHHcCCCc
Q 028546          143 EFG---VMFIETSAKAG--FNIKPLFRKIAAALPGME  174 (207)
Q Consensus       143 ~~~---~~~~~~s~~~~--~~i~~~~~~l~~~~~~~~  174 (207)
                      ..+   .++|.+|..+.  .++.++.+++.+.+.+.+
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            223   36888887654  489999999999887654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=7e-16  Score=118.22  Aligned_cols=117  Identities=16%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             CCce-eEEEEcCCCCCHHHHHHHHhc--CC--------------CCCccccccceeeeEEEEEE--------------CC
Q 028546            7 LAKY-KLVFLGDQSVGKTSIITRFMY--DK--------------FDTTYQATIGIDFLSKTMYL--------------ED   55 (207)
Q Consensus         7 ~~~~-~i~v~G~~~sGKStli~~l~~--~~--------------~~~~~~~~~~~~~~~~~~~~--------------~~   55 (207)
                      ...+ +|+|+|+.++|||||+.+|+.  +.              ...+..+..++......+..              ++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            3456 599999999999999999972  10              01222233344333333322              33


Q ss_pred             eEEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028546           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLV  127 (207)
Q Consensus        56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~  127 (207)
                      ..+.++++||||+.+|.......++-+|++|+|+|+.++-..++..-|......    ++|+++++||+|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----RIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCEEEEEEECHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----CCCeEEEEECcccc
Confidence            567899999999999999999999999999999999986655555544444333    58999999999953

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.42  E-value=4.6e-14  Score=103.59  Aligned_cols=110  Identities=15%  Similarity=-0.004  Sum_probs=66.6

Q ss_pred             EEEEEecCChhhhccccccc-----cccCCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028546           59 RLQLWDTAGQERFRSLIPSY-----IRDSSVAVIVYDVAN---RQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKR  130 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~-----~~~~d~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~  130 (207)
                      .+.++|+||+..+.......     ....+.+++++|+..   +..+..............  ..|.++++||+|+..+.
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccHH
Confidence            58899999987653322211     124668999999863   333332221111111111  57899999999987543


Q ss_pred             CCCHH--------------------------HHHHHHHH--hCCeEEEEecCCCCChHHHHHHHHHHc
Q 028546          131 QVSIE--------------------------EGDGKAKE--FGVMFIETSAKAGFNIKPLFRKIAAAL  170 (207)
Q Consensus       131 ~~~~~--------------------------~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~~  170 (207)
                      +....                          ........  ..++++++||.+|+|+++++..|.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            21100                          00000111  246899999999999999999998763

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.40  E-value=3.3e-13  Score=102.82  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=64.5

Q ss_pred             EEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028546           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEG  137 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (207)
                      +.+.|++|.|...-...   ....+|.+++|.....++..+..+.-+..+        +=++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~--------aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL--------ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH--------CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh--------hheeeEeccccccchHHHHHHH
Confidence            46788888874332222   335599999999999776555544332222        1289999999865544322222


Q ss_pred             HHHHHH----------hCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          138 DGKAKE----------FGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       138 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ......          +..+++.+|+++|.|+++++++|.++..
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            222221          3568999999999999999999988754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=3.6e-13  Score=102.68  Aligned_cols=102  Identities=16%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             EEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH--HH
Q 028546           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSI--EE  136 (207)
Q Consensus        59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~  136 (207)
                      .+.+++|.|.....   ..+...+|.+++|.+...++..+..+..+..+        +-++|+||+|.........  ..
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~--------aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV--------ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH--------CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc--------ccEEEEEeecccchHHHHHHHHH
Confidence            35555665532211   12446799999999887666555554444333        2278899999754322211  11


Q ss_pred             HHHHHH-------HhCCeEEEEecCCCCChHHHHHHHHHHcC
Q 028546          137 GDGKAK-------EFGVMFIETSAKAGFNIKPLFRKIAAALP  171 (207)
Q Consensus       137 ~~~~~~-------~~~~~~~~~s~~~~~~i~~~~~~l~~~~~  171 (207)
                      ......       .+..+++.||+.+|.|++++++.|.++..
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            111111       23468999999999999999999988654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.33  E-value=1.1e-11  Score=92.70  Aligned_cols=84  Identities=15%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCe------------E---EEEEEEecCChhh---
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDR------------T---VRLQLWDTAGQER---   70 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~i~D~~G~~~---   70 (207)
                      .+||.+||.|+||||||++++++........|.++++.....+.+.+.            .   ..+.++|+||.-.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999988876666777777766666665432            1   2588999999321   


Q ss_pred             ----hccccccccccCCEEEEEEECC
Q 028546           71 ----FRSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        71 ----~~~~~~~~~~~~d~~ilv~d~~   92 (207)
                          ........++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                2223445578999999999874

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=3e-11  Score=91.10  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEEEECCe---------------EEEEEEEecCChhh--
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER--   70 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--   70 (207)
                      .++|.++|.|+||||||++++++... .....|.+|++.....+.+.+.               ...+.+.|.||.-.  
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            48999999999999999999997754 3556788887776666665542               23688999998432  


Q ss_pred             -----hccccccccccCCEEEEEEECCC
Q 028546           71 -----FRSLIPSYIRDSSVAVIVYDVAN   93 (207)
Q Consensus        71 -----~~~~~~~~~~~~d~~ilv~d~~~   93 (207)
                           ........++++|+++.|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence                 12234445789999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.1e-10  Score=87.95  Aligned_cols=122  Identities=18%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCccccccceeeeEEEE-----------------------------------
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DTTYQATIGIDFLSKTM-----------------------------------   51 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~~~~-~~~~~~~~~~~~~~~~~-----------------------------------   51 (207)
                      ...+|+|+|..++|||||||+|++..+ +....+++.........                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            346899999999999999999999886 33333333211111100                                   


Q ss_pred             ---------------EECCeEEEEEEEecCChhh-------------hccccccccccCC-EEEEEEECCChHHHHHHHH
Q 028546           52 ---------------YLEDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSS-VAVIVYDVANRQSFLNTSR  102 (207)
Q Consensus        52 ---------------~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~  102 (207)
                                     .... ...+.++|+||...             ...++..|+...+ ++++|.+++...+-.....
T Consensus       105 ~~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~  183 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             CCCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH
Confidence                           0000 11488999999432             1233455666776 5566777765444444444


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028546          103 WIEEVRTERGGDVIIVLVGNKTDLVDKRQVS  133 (207)
Q Consensus       103 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (207)
                      +...+   .....++++|+||+|..++.+..
T Consensus       184 ~~~~~---~~~~~r~i~Vltk~D~~~~~~~~  211 (299)
T d2akab1         184 IAKEV---DPQGQRTIGVITKLDLMDEGTDA  211 (299)
T ss_dssp             HHHHH---CTTCSSEEEEEECGGGSCTTCCC
T ss_pred             HHHHh---CcCCCceeeEEeccccccchhhH
Confidence            44443   23346799999999987665443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=9.1e-11  Score=89.29  Aligned_cols=83  Identities=16%  Similarity=0.183  Sum_probs=46.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEE----------------------CCeEEEEEEEecCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYL----------------------EDRTVRLQLWDTAG   67 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~i~D~~G   67 (207)
                      ++|+++|.|++|||||+|++++.+......|.+|++........                      ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            58999999999999999999998876666676666543332210                      01235799999999


Q ss_pred             hhh-------hccccccccccCCEEEEEEECC
Q 028546           68 QER-------FRSLIPSYIRDSSVAVIVYDVA   92 (207)
Q Consensus        68 ~~~-------~~~~~~~~~~~~d~~ilv~d~~   92 (207)
                      .-.       ........++.+|++++|+|+.
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETT
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEeccc
Confidence            532       1222334467999999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.02  E-value=4.7e-10  Score=84.77  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             EEEEEecCChhh-------------hccccccccccCCEEEEEE-ECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546           59 RLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVY-DVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKT  124 (207)
Q Consensus        59 ~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  124 (207)
                      .+.++|+||...             ...++..|+.+++.+++++ +......-.....+...+   .+....+++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            588999999432             2245566788899766655 544322222233333333   23345799999999


Q ss_pred             CCCCCCC
Q 028546          125 DLVDKRQ  131 (207)
Q Consensus       125 D~~~~~~  131 (207)
                      |..+..+
T Consensus       209 D~~~~~~  215 (306)
T d1jwyb_         209 DLMDKGT  215 (306)
T ss_dssp             TSSCSSC
T ss_pred             ccccchh
Confidence            9875543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=3.6e-08  Score=72.99  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CccccccceeeeEEEEEECCeEEEEEEEecCCh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-TTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   68 (207)
                      ...++|+|+|.|++|||||+|++.+.... ....|+.|.+..  .+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC---CeEEecCCCc
Confidence            45699999999999999999999987763 444555554432  233333   5889999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1.6e-07  Score=66.88  Aligned_cols=88  Identities=19%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             ccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH--hCCeEEEEe
Q 028546           76 PSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKE--FGVMFIETS  152 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s  152 (207)
                      +..+.+.|.+++|+++.+|. +...+.+++......   +++.++|+||+|+.++.+.  .........  .+++++.+|
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vS   79 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTS   79 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECC
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEec
Confidence            34567899999999988754 445566666655544   6899999999999754332  222333332  347899999


Q ss_pred             cCCCCChHHHHHHHHH
Q 028546          153 AKAGFNIKPLFRKIAA  168 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (207)
                      ++++.|++++..+|..
T Consensus        80 a~~~~g~~~L~~~l~~   95 (225)
T d1u0la2          80 AKTGMGIEELKEYLKG   95 (225)
T ss_dssp             TTTCTTHHHHHHHHSS
T ss_pred             cccchhHhhHHHHhcC
Confidence            9999999999888754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.40  E-value=1.1e-06  Score=60.24  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=9.9e-08  Score=68.02  Aligned_cols=58  Identities=16%  Similarity=0.044  Sum_probs=34.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccccceeeeEEEEEECCeEEEEEEEecCChhhh
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFDTTY------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   71 (207)
                      ..+++|++|+|||||+|+|.+.....+.      ..+.-++.....+.+.+.   -.++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            5689999999999999999876432221      111111222233444443   378899996543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.30  E-value=2.5e-07  Score=68.39  Aligned_cols=114  Identities=13%  Similarity=0.080  Sum_probs=73.0

Q ss_pred             cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q 028546           75 IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGVMFIETSAK  154 (207)
Q Consensus        75 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (207)
                      ....+..+|++|+|+|+..|.+...  ..+..+.    .++|.++|+||+|+.+...  .+.........+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            4556889999999999987655443  1122222    1579999999999965432  112222233446789999999


Q ss_pred             CCCChHHHHHHHHHHcCCCccC----cccccccccccccCCCCCCc
Q 028546          155 AGFNIKPLFRKIAAALPGMETL----SSTKQEDMVDVNLKPTVNSS  196 (207)
Q Consensus       155 ~~~~i~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  196 (207)
                      ++.+..++.+.+.+.+.+....    ......-...+-+.|++|.|
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~PNvGKS  126 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKS  126 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHH
T ss_pred             cCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecCccchh
Confidence            9999988888777766543222    12222233456777777754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=1.8e-07  Score=66.87  Aligned_cols=89  Identities=18%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             ccccccCCEEEEEEECCChH-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHhCCeEEEEe
Q 028546           76 PSYIRDSSVAVIVYDVANRQ-SFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVS--IEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus        76 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~s  152 (207)
                      +..+.+.|.+++|+++.+|. .+..+.+++......   +++.++|+||+|+.++.+..  ...........+++++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeee
Confidence            34457899999999998754 455566666555443   68899999999997653321  1122233345689999999


Q ss_pred             cCCCCChHHHHHHHH
Q 028546          153 AKAGFNIKPLFRKIA  167 (207)
Q Consensus       153 ~~~~~~i~~~~~~l~  167 (207)
                      +.++.|++++..+|.
T Consensus        82 a~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          82 SKDQDSLADIIPHFQ   96 (231)
T ss_dssp             HHHHTTCTTTGGGGT
T ss_pred             cCChhHHHHHHHhhc
Confidence            999999988877653

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=9.2e-06  Score=57.83  Aligned_cols=72  Identities=14%  Similarity=0.150  Sum_probs=40.3

Q ss_pred             cCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--eEEEEecCCCC
Q 028546           81 DSSVAVIVYDVANRQSFLNT-SRWIEEVRTERGGDVIIVLVGNKTDLVDKRQVSIEEGDGKAKEFGV--MFIETSAKAGF  157 (207)
Q Consensus        81 ~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~  157 (207)
                      ..+.+|.|+|+........- ..+..++. ..  +   ++++||+|+.++.    +..+...+.++.  ++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-~A--D---~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVG-YA--D---RILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHH-TC--S---EEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHH-hC--C---cccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCcc
Confidence            35788999999864332221 11222232 11  2   7889999987542    345555666654  566544 3344


Q ss_pred             ChHHHH
Q 028546          158 NIKPLF  163 (207)
Q Consensus       158 ~i~~~~  163 (207)
                      .+..+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            555554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=4.5e-07  Score=64.20  Aligned_cols=91  Identities=13%  Similarity=0.052  Sum_probs=52.5

Q ss_pred             EEEEEEecCChhhhccc----ccc---ccc-----cCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           58 VRLQLWDTAGQERFRSL----IPS---YIR-----DSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~---~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      +.+.++||+|...+...    +..   .+.     ..+-.+||+|++..  .+.+..........    -+--++++|.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV----NVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc----CCceEEEeccc
Confidence            46899999994332211    111   111     24678999999742  33333333333322    23468899999


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546          126 LVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      ...  .  .-.+...+...+.++.+++  +|.+++
T Consensus       168 e~~--~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~  196 (213)
T d1vmaa2         168 GTA--K--GGITLAIARELGIPIKFIG--VGEKAE  196 (213)
T ss_dssp             GCS--C--TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCC--c--ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            532  2  3345666777899887776  455553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=2.2e-07  Score=66.36  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -..+++|++|+|||||+|+|.+...
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ceEEEECCCCccHHHHHHhhccHhH
Confidence            3567999999999999999997643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=1.9e-06  Score=60.75  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             EEEEEEecCChhhhcc----cc---ccccc-----cCCEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546           58 VRLQLWDTAGQERFRS----LI---PSYIR-----DSSVAVIVYDVANR-QSFLNTSRWIEEVRTERGGDVIIVLVGNKT  124 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~----~~---~~~~~-----~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  124 (207)
                      +.+.++||+|......    .+   ...++     ..+-.++|.|++.. +....+...+..+       .+--++++|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------CCceEEEeec
Confidence            4689999999433221    11   11122     24688999999743 2333333322222       2346889999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546          125 DLVDKRQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                      |....    .-.+.......+.++.+++  +|++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            95322    3345666778899988777  555553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.11  E-value=5e-07  Score=63.69  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             EEEEEEecCChhhhccc----cccc---c-----ccCCEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028546           58 VRLQLWDTAGQERFRSL----IPSY---I-----RDSSVAVIVYDVANR-QSFLNTSRWIEEVRTERGGDVIIVLVGNKT  124 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~---~-----~~~d~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~  124 (207)
                      +.+.++||+|...+...    +..+   +     ...+-.+||+|++.. +....+...+..+       -+--++++|.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------GLTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------CCSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------CCceEEEecc
Confidence            47899999995433221    1111   1     245778999999743 3444444444433       1236789999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q 028546          125 DLVDKRQVSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (207)
                      |.....    -.+...+...+.++..++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEE
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEe
Confidence            963322    233555677888886666

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.05  E-value=2.6e-06  Score=60.08  Aligned_cols=91  Identities=14%  Similarity=0.060  Sum_probs=53.5

Q ss_pred             EEEEEEecCChhhhcc------ccccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRS------LIPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDK  129 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~  129 (207)
                      +.+.++||+|...+..      ....+  .-..+-+++|++++...  +.+........ ..   .+--++++|.|..  
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~~~~-~~---~~~~lI~TKlDet--  166 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFNQ-AS---KIGTIIITKMDGT--  166 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHH-HC---TTEEEEEECTTSC--
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chHHHHhhhhc-cc---CcceEEEecccCC--
Confidence            4789999999543221      11111  22467889999998532  22222222222 21   2235779999953  


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEecCCCCChH
Q 028546          130 RQVSIEEGDGKAKEFGVMFIETSAKAGFNIK  160 (207)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (207)
                        ...-.+...+...++++..++  +|.+++
T Consensus       167 --~~~G~~l~~~~~~~lPi~~it--~Gq~v~  193 (211)
T d1j8yf2         167 --AKGGGALSAVAATGATIKFIG--TGEKID  193 (211)
T ss_dssp             --SCHHHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             --CcccHHHHHHHHHCcCEEEEe--CCCCcc
Confidence              235566777888899987777  466554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.88  E-value=4.4e-06  Score=56.73  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=23.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .++.++|+++|++||||||+.+.|-.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            47789999999999999999998853

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.79  E-value=1.4e-05  Score=56.17  Aligned_cols=85  Identities=19%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             EEEEEEecCChhhhccc----cccc--cccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028546           58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIVLVGNKTDLVDKRQ  131 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~  131 (207)
                      +.+.++||+|.......    +..+  ..+.+-+++|.|++....-..   ....+.+..+   +--++++|.|...   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~~---~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKVG---VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHTC---CCEEEEECGGGCS---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhCC---CCeeEEeecCccc---
Confidence            46899999995433221    1111  235788999999975432222   2222222222   2358899999522   


Q ss_pred             CCHHHHHHHHHHhCCeEEEEe
Q 028546          132 VSIEEGDGKAKEFGVMFIETS  152 (207)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (207)
                       ..-.+.......+.|+.+++
T Consensus       164 -~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 -RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             -SCHHHHHHHHHHCCCEEEEC
T ss_pred             -cchHHHHHHHHHCCCEEEEe
Confidence             24455667778888886664

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.77  E-value=7.8e-06  Score=54.27  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+++ |++.|+||||||||.++|...
T Consensus         1 Mkkl-Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           1 MKKI-ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             CCEE-EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHHh
Confidence            3444 788999999999999988643

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=9.6e-06  Score=55.42  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -+|+|+|++|+|||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.63  E-value=1.4e-05  Score=53.90  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..+|+++|+|||||||+.+.|.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999884

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.63  E-value=1.6e-05  Score=54.88  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      |+.++|+++|+|||||||+...|-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            466899999999999999998775

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.63  E-value=1.9e-05  Score=54.72  Aligned_cols=27  Identities=15%  Similarity=0.219  Sum_probs=22.3

Q ss_pred             CCCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            4 VSPLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         4 ~~~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      |+..+..-|+|+|+|||||||+...|.
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La   27 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            345566788999999999999998875

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.6e-05  Score=53.58  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      |+|+|++|||||||++++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=2.4e-05  Score=53.49  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|+|+|||||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998763

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.52  E-value=2.3e-05  Score=52.78  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      |++.|++||||||+.++|..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88899999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.49  E-value=2.6e-05  Score=53.83  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++++|+|+|+|||||||+...|.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.48  E-value=3.5e-05  Score=53.28  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=21.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+-++|+++|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999988753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=8e-05  Score=54.56  Aligned_cols=58  Identities=21%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--Ccc---ccccceeeeEEEEEE-CCeEEEEEEEecCChhh
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKFD--TTY---QATIGIDFLSKTMYL-EDRTVRLQLWDTAGQER   70 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   70 (207)
                      =|.|+|+.++|||+|+|.|++....  ...   ..|.++-.  +.... ++....+.++||.|...
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~--~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEE--EEeeccCCCCceEEEEecccccc
Confidence            4677899999999999999977642  111   12333322  22222 23345789999999644

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.46  E-value=3.2e-05  Score=53.00  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|+|+|||||||+...|.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La   21 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998775

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=4e-05  Score=52.43  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+++|+|||||||+...|.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998875

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=3.5e-05  Score=52.58  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|+|+|||||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998774

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=4.2e-05  Score=51.52  Aligned_cols=21  Identities=19%  Similarity=0.506  Sum_probs=18.3

Q ss_pred             eE-EEEcCCCCCHHHHHHHHhc
Q 028546           11 KL-VFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i-~v~G~~~sGKStli~~l~~   31 (207)
                      || .|+|.+|||||||+.+++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 5999999999999999874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.38  E-value=4.9e-05  Score=51.98  Aligned_cols=22  Identities=18%  Similarity=0.428  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .++|+|+|+|||||||+...|-
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La   23 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999998874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=9.7e-05  Score=50.18  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +...-|+++|.||||||||..++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556788999999999999998864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.2e-05  Score=49.40  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .|+++|++||||||+...|-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987753

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=8.4e-05  Score=50.38  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      .|.+.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58899999999999999886

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00011  Score=50.58  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.|+|+|+|||||||....|.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999998774

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=4.7e-05  Score=52.11  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+++||.|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999853

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=0.0001  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .=|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998863

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.16  E-value=0.00012  Score=51.45  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      |+.+.|+|-||+||||||+...|-
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            567899999999999999998774

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.00013  Score=52.20  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      =.++|+|+.|||||||++.+.+-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999888764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.11  E-value=0.00013  Score=49.60  Aligned_cols=19  Identities=32%  Similarity=0.321  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      |+|.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999999874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.09  E-value=0.00013  Score=48.98  Aligned_cols=20  Identities=35%  Similarity=0.446  Sum_probs=17.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 028546           10 YKLVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l   29 (207)
                      .+|+++|++||||||+...+
T Consensus         2 p~IvliG~~G~GKSTig~~L   21 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRL   21 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHH
Confidence            37999999999999998876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00015  Score=49.78  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.07  E-value=0.00015  Score=48.59  Aligned_cols=19  Identities=26%  Similarity=0.585  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028546           11 KLVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l   29 (207)
                      +|+++|++||||||+...|
T Consensus         2 ~I~liG~~GsGKsTi~k~L   20 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARAL   20 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHH
Confidence            5899999999999998877

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.07  E-value=0.00014  Score=49.54  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=17.4

Q ss_pred             eeEEE-EcCCCCCHHHHHHHHh
Q 028546           10 YKLVF-LGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v-~G~~~sGKStli~~l~   30 (207)
                      +||+| .|.+||||||+++.|.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            46665 5999999999998874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00016  Score=49.41  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999998744

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.00021  Score=49.69  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -++++|+.|+|||||++.+.+-..
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcccc
Confidence            468999999999999999987643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.04  E-value=0.00024  Score=48.68  Aligned_cols=26  Identities=19%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++..++=|.|.|++|||||||.++|.
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34556778899999999999999885

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00016  Score=48.44  Aligned_cols=20  Identities=20%  Similarity=0.423  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      ++++|++||||||+...|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45679999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.02  E-value=0.00019  Score=51.40  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      =.++++|+.|||||||++.+.+-.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999887654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.99  E-value=0.00019  Score=51.77  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            68999999999999999887653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.98  E-value=0.00018  Score=48.40  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999887543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00023  Score=51.28  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++++|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            68999999999999999887764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00038  Score=47.92  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++.--|+++|+|||||||+...|.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La   29 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLV   29 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            334457888999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00023  Score=48.96  Aligned_cols=20  Identities=20%  Similarity=0.580  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      |+|+||+||||+||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998853

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00031  Score=49.85  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999887654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.92  E-value=0.00024  Score=47.85  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      +-|.++|.+||||||+...|-
T Consensus         7 ~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            668899999999999988775

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00025  Score=51.99  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999988754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00027  Score=49.28  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|+||+||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.88  E-value=0.00028  Score=47.36  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      |++.|++||||||+.+.|..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45559999999999998864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.87  E-value=0.00035  Score=49.51  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47899999999999999777653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.87  E-value=0.00025  Score=48.85  Aligned_cols=19  Identities=16%  Similarity=0.407  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      |+|+|+|||||||+...|.
T Consensus        11 I~l~G~pGSGKsT~a~~La   29 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIV   29 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7789999999999999875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.86  E-value=0.0003  Score=50.16  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~   33 (207)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.85  E-value=0.00041  Score=51.82  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .+|+|.|+.|||||||+++++..-
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.85  E-value=0.00031  Score=47.33  Aligned_cols=19  Identities=16%  Similarity=0.420  Sum_probs=17.1

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028546           11 KLVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l   29 (207)
                      .|+++|++||||||+...|
T Consensus         4 ~Iil~G~~GsGKSTia~~L   22 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGREL   22 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            3789999999999999877

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.82  E-value=0.00042  Score=49.46  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      -+.++|+.|||||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            367999999999999999987754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.00043  Score=49.31  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999888764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.81  E-value=0.00025  Score=51.17  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      =+++|+|+.|||||||++.+.+-.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            378999999999999999777643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.80  E-value=0.00043  Score=49.46  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      ++++|+.|||||||++.+.+-..
T Consensus        35 ~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            68999999999999999988653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00025  Score=50.43  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++++|+.|||||||++.+.+-
T Consensus        28 ~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            689999999999999999874

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.74  E-value=0.00033  Score=49.57  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      ++++|+.|||||||++.+.+-..
T Consensus        29 ~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          29 FVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCcC
Confidence            78999999999999999988653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.73  E-value=0.00053  Score=48.88  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -+.++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999888764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00041  Score=49.48  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            36899999999999999888764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.69  E-value=0.00068  Score=48.81  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-|++.|+||+|||||..++-.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998854

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.00062  Score=49.05  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      +.++|+.|||||||++.+.+-..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCc
Confidence            68999999999999999988743

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.65  E-value=0.0006  Score=46.81  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=22.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +..+++=|+|-|..||||||+++.|..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            445567899999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.63  E-value=0.00055  Score=49.42  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999998754

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00036  Score=47.68  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=18.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      -.-|.++|++||||||+.+.|-
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3567788999999999999884

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.00063  Score=48.21  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.+++.||||+||||+.+.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999998763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.53  E-value=0.00064  Score=48.24  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.+++.||||+||||+++.+.+
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00079  Score=46.31  Aligned_cols=24  Identities=33%  Similarity=0.570  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+-+++++|+||+|||+++..|-.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345899999999999999987753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.00099  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ++=|+|.|+.|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4678999999999999998774

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.41  E-value=0.00053  Score=48.90  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999888764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00095  Score=48.35  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+=++++||+||+|||+++..|..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345899999999999999988753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.001  Score=46.82  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+++.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.30  E-value=0.0012  Score=45.68  Aligned_cols=20  Identities=15%  Similarity=0.406  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -|+|-|..||||||++..|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58889999999999998775

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.24  E-value=0.0029  Score=41.87  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      .-|++-|+-|||||||++.+...-
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            447788999999999999987543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0012  Score=45.92  Aligned_cols=19  Identities=16%  Similarity=0.330  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      |+|.|||||||+|+...|.
T Consensus         6 I~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6667999999999998764

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.0015  Score=44.56  Aligned_cols=24  Identities=13%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++=|.|.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            477889999999999999987643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0022  Score=45.67  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.+++.||+|+||||++..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46888999999999999988654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.16  E-value=0.0012  Score=47.30  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999998863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.08  E-value=0.0016  Score=46.55  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...|++.||||+|||+|++++-.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            35699999999999999998853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.06  E-value=0.0018  Score=46.29  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.03  E-value=0.0025  Score=44.32  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=20.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +.+=|.+.|.+|||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445688889999999999998863

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0016  Score=46.31  Aligned_cols=22  Identities=18%  Similarity=0.375  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++++.|++|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999988643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0022  Score=45.13  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+++.||+|+||||++..+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4899999999999999988643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.91  E-value=0.0021  Score=47.53  Aligned_cols=22  Identities=32%  Similarity=0.558  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.++++||||+|||.|.+++-.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4689999999999999998864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.0022  Score=45.83  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.|++.||||+|||+|++++-.
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3589999999999999998875

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.0022  Score=44.85  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      ++++.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999987753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.78  E-value=0.002  Score=46.36  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            344599999999999988744

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.0025  Score=44.57  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++++.|++|+||||++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999988753

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.0029  Score=45.49  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.|++.||||+|||+|++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            46999999999999999988653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0029  Score=43.80  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999998875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0032  Score=45.23  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -.+++.||||+|||++++.+-.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4589999999999999998863

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0026  Score=44.81  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466779999999999997754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0059  Score=42.21  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      +=|.|+|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45789999999999999987643

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0045  Score=42.47  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      +.|.|++|+|||+|..++..+-.
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            67889999999999998875443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.37  E-value=0.0077  Score=43.82  Aligned_cols=26  Identities=19%  Similarity=0.227  Sum_probs=20.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            5 SPLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         5 ~~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +...++=|.|-|++|||||||...+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34456888999999999999987653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.00081  Score=45.97  Aligned_cols=18  Identities=22%  Similarity=0.577  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028546           13 VFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        13 ~v~G~~~sGKStli~~l~   30 (207)
                      +|+|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999985

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0044  Score=43.03  Aligned_cols=19  Identities=21%  Similarity=0.441  Sum_probs=15.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      |+|-|+.||||||++..|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6666999999999887764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.33  E-value=0.0048  Score=42.59  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +=|.|.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999987753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.0074  Score=44.43  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      ..++=|.|.|++|||||||.+.|.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            446889999999999999988764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.0034  Score=47.87  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=18.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 028546            9 KYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +=++++||+||+|||+++..|-
T Consensus        43 k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHH
Confidence            3467999999999999996553

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.28  E-value=0.0047  Score=47.96  Aligned_cols=20  Identities=35%  Similarity=0.660  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 028546           10 YKLVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l   29 (207)
                      -+|+++||+|+|||-|.++|
T Consensus        50 sNILliGPTGvGKTlLAr~L   69 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRL   69 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHH
Confidence            48999999999999999987

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.27  E-value=0.0044  Score=44.68  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -.|++.|++|+|||+|++++...
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHH
Confidence            45889999999999999998644

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0054  Score=42.99  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~   33 (207)
                      ++|.|+||+|||+|..++..+-
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            6788999999999999887553

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.08  E-value=0.0081  Score=45.30  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHh
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      .+++-.+++.||||+|||+|...+.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHH
Confidence            3555678999999999999999875

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.08  E-value=0.0038  Score=45.68  Aligned_cols=18  Identities=28%  Similarity=0.523  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028546           12 LVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l   29 (207)
                      .+++|+.||||||++.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            368899999999999987

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.06  E-value=0.0032  Score=46.90  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028546           10 YKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~   30 (207)
                      -++++.|+||+|||+|+.++-
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            369999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.04  E-value=0.008  Score=40.41  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .-|++.|++|+||||+.-.|....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999886543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.92  E-value=0.0067  Score=42.78  Aligned_cols=23  Identities=17%  Similarity=0.174  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      ++|.|+||+|||+|.-++..+-.
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhh
Confidence            67889999999999998875543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0069  Score=42.60  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            466779999999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.78  E-value=0.0099  Score=39.96  Aligned_cols=25  Identities=12%  Similarity=0.327  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .-+++.|++|+||||+.-.|...-+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4588999999999999999886543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.68  E-value=0.0086  Score=45.79  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|.|+.||||||.++.++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.66  E-value=0.032  Score=40.05  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      +.+.|++++|||+|..++...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            467899999999999877643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.61  E-value=0.0059  Score=45.46  Aligned_cols=26  Identities=19%  Similarity=0.419  Sum_probs=22.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         7 ~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+-++|.|=|+.|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            45688999999999999999988654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.55  E-value=0.0097  Score=41.76  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      -++|.|+||+|||+|..++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999988754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.46  E-value=0.0092  Score=45.38  Aligned_cols=19  Identities=16%  Similarity=0.417  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      .+|+|+.|||||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999973

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.35  E-value=0.012  Score=42.53  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .-|.|.|..|.|||||..+++..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            34678999999999999988643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.011  Score=40.97  Aligned_cols=19  Identities=21%  Similarity=0.296  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      |+|-|..||||||+++.|.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7788999999999998775

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.29  E-value=0.011  Score=41.27  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028546           12 LVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~~   33 (207)
                      ++|.|++|+|||+|...+..+-
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6788999999999999987543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.27  E-value=0.014  Score=40.04  Aligned_cols=27  Identities=30%  Similarity=0.295  Sum_probs=22.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      .+++-.+++.||+++|||.|..++..-
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHH
Confidence            467778899999999999999987643

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.26  E-value=0.014  Score=38.88  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~~~   34 (207)
                      .-+++.|++|+||||+.-.+...-+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988876543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.24  E-value=0.015  Score=43.27  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      ++|.|=|+.|+||||+++.|...
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSG
T ss_pred             EEEEEECCccCCHHHHHHHHHHH
Confidence            78999999999999999987653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.18  E-value=0.013  Score=43.41  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ++|.|=|+.|+||||+++.|..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCcCCCHHHHHHHHHH
Confidence            6788889999999999998853

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.015  Score=40.86  Aligned_cols=23  Identities=17%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYDK   33 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~~   33 (207)
                      =++|.|++|+|||+|..++..+-
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36788999999999999997543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.88  E-value=0.017  Score=40.48  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -|.+.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378889999999999998853

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.018  Score=39.66  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.82  E-value=0.045  Score=39.28  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      +.+.|++++|||+|.-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            56789999999999876653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.79  E-value=0.01  Score=43.18  Aligned_cols=20  Identities=15%  Similarity=0.343  Sum_probs=14.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      =|+|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999998764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.72  E-value=0.018  Score=39.94  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028546           11 KLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~   31 (207)
                      -++|.|++|+|||+|..++..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467889999999999877653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.56  E-value=0.014  Score=42.27  Aligned_cols=15  Identities=33%  Similarity=0.521  Sum_probs=13.0

Q ss_pred             EEEEcCCCCCHHHHH
Q 028546           12 LVFLGDQSVGKTSII   26 (207)
Q Consensus        12 i~v~G~~~sGKStli   26 (207)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.021  Score=42.05  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      .++++||+|+|||.|..++-
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            58899999999999999874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.37  E-value=0.023  Score=40.70  Aligned_cols=20  Identities=10%  Similarity=0.348  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      ++|.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999887763

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.36  E-value=0.024  Score=39.26  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            788899999999999988654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.31  E-value=0.024  Score=39.79  Aligned_cols=19  Identities=42%  Similarity=0.618  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      +++.|++|+||||++..+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7888999999999998764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.022  Score=43.63  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      -+++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999887763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.21  E-value=0.019  Score=41.97  Aligned_cols=15  Identities=27%  Similarity=0.609  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 028546           12 LVFLGDQSVGKTSII   26 (207)
Q Consensus        12 i~v~G~~~sGKStli   26 (207)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999765

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.14  E-value=0.027  Score=41.49  Aligned_cols=20  Identities=20%  Similarity=0.388  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028546           12 LVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~   31 (207)
                      +++.|+||+|||.|.+++-+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44569999999999998853

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.029  Score=39.99  Aligned_cols=19  Identities=11%  Similarity=0.214  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      ++|+|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.72  E-value=0.043  Score=39.32  Aligned_cols=26  Identities=19%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 028546            6 PLAKYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         6 ~~~~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .+++--+.+.|++++|||+|++.+..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            35667788889999999999998764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.46  E-value=0.046  Score=41.06  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=19.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 028546            8 AKYKLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         8 ~~~~i~v~G~~~sGKStli~~l~   30 (207)
                      +.-+++++||.|+|||-|..+|-
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHH
Confidence            34679999999999999998874

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.043  Score=39.70  Aligned_cols=22  Identities=14%  Similarity=0.283  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999888654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.89  E-value=0.32  Score=33.22  Aligned_cols=65  Identities=14%  Similarity=0.058  Sum_probs=44.3

Q ss_pred             EEEEEEEecCChhhhccccccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCC
Q 028546           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVIIV-LVGNKTDLV  127 (207)
Q Consensus        57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~  127 (207)
                      .+.+.++|+++...  ......+..+|.++++...+ ..++..+.+....+.+.   +.|++ +|+|+.+..
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRS  176 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSC
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhcccccc
Confidence            35789999987532  23344466899999999876 45666666666655543   45654 889999864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.76  E-value=0.34  Score=32.09  Aligned_cols=101  Identities=10%  Similarity=0.070  Sum_probs=55.1

Q ss_pred             CceeEEEEcC-CCCCHHHHHHHHhcCCCCCccccccceeeeEEEEEECCeEEEEEEEecCChhhh---------------
Q 028546            8 AKYKLVFLGD-QSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------------   71 (207)
Q Consensus         8 ~~~~i~v~G~-~~sGKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------------   71 (207)
                      +.+||.|+|. .+.|-+ |+..+..+..-..                 ...+.+.++|.+.....               
T Consensus        23 ~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~-----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNH-LLFKLASGEVFGQ-----------------DQPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCEEEEEETTTSHHHHH-HHHHHHHTTTTCT-----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCcEEEEECCCcHHHHH-HHHHHHcCcccCC-----------------CceEEEEEecCccccchhcchhhhhccccccc
Confidence            4589999997 556755 4445554432111                 12245666666552210               


Q ss_pred             ------ccccccccccCCEEEEEEECCChH--H--------HHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028546           72 ------RSLIPSYIRDSSVAVIVYDVANRQ--S--------FLNTSRWIEEVRTERGGDVIIVLVGNKTDL  126 (207)
Q Consensus        72 ------~~~~~~~~~~~d~~ilv~d~~~~~--s--------~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~  126 (207)
                            .......+.++|++|++.......  +        ..-++.+.+.+.+..+++.-++++.|-.|.
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                  001122367899999988775411  1        111334445555555556667777777763

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.051  Score=40.69  Aligned_cols=18  Identities=28%  Similarity=0.532  Sum_probs=14.8

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028546           12 LVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l   29 (207)
                      .+|.|+||+||||++.++
T Consensus       166 ~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEECCTTSTHHHHHHHH
T ss_pred             EEEEcCCCCCceehHHHH
Confidence            567799999999987543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.36  E-value=0.1  Score=32.37  Aligned_cols=22  Identities=9%  Similarity=0.291  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      +-|.+.|..|+|||||.++|..
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            7889999999999999998853

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.35  E-value=0.088  Score=36.83  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      ++|.|+..+||||+++++-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5778999999999999863

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.00  E-value=0.097  Score=36.36  Aligned_cols=19  Identities=16%  Similarity=0.415  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028546           12 LVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~   30 (207)
                      +++.|+..+||||+++++-
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=89.98  E-value=0.08  Score=38.82  Aligned_cols=20  Identities=35%  Similarity=0.672  Sum_probs=17.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028546           11 KLVFLGDQSVGKTSIITRFM   30 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~   30 (207)
                      -++++|++|+|||.+...+-
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            56788999999999998764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.1  Score=37.18  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      +.+.|++|+|||+|.-++...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            567899999999999877644

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.98  E-value=0.13  Score=36.92  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028546           11 KLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+.++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998887654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=88.31  E-value=0.1  Score=38.00  Aligned_cols=15  Identities=47%  Similarity=0.731  Sum_probs=13.3

Q ss_pred             EEEcCCCCCHHHHHH
Q 028546           13 VFLGDQSVGKTSIIT   27 (207)
Q Consensus        13 ~v~G~~~sGKStli~   27 (207)
                      +++|..|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            689999999999873

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.73  E-value=0.78  Score=29.42  Aligned_cols=49  Identities=16%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             cccccCCEEEEEEECCCh---H-------HHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028546           77 SYIRDSSVAVIVYDVANR---Q-------SFLNTSRWIEEVRTERGGDVIIVLVGNKTD  125 (207)
Q Consensus        77 ~~~~~~d~~ilv~d~~~~---~-------s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D  125 (207)
                      ..++++|++|+.......   +       ...-++.+...+.+..+++.-++++.|-.|
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            346889999998876531   1       122234444555555544555666676666

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.46  E-value=0.18  Score=35.45  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028546           10 YKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~   31 (207)
                      .-|+|.|++|+||+.+...+-.
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4589999999999998887743

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.32  E-value=0.12  Score=37.81  Aligned_cols=16  Identities=44%  Similarity=0.661  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHHHH
Q 028546           12 LVFLGDQSVGKTSIIT   27 (207)
Q Consensus        12 i~v~G~~~sGKStli~   27 (207)
                      -+++|..|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4788999999999764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.25  E-value=0.13  Score=37.57  Aligned_cols=16  Identities=38%  Similarity=0.619  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHHHH
Q 028546           12 LVFLGDQSVGKTSIIT   27 (207)
Q Consensus        12 i~v~G~~~sGKStli~   27 (207)
                      -+++|..|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            3689999999999873

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.24  E-value=0.52  Score=30.32  Aligned_cols=23  Identities=4%  Similarity=0.121  Sum_probs=16.5

Q ss_pred             CceeEEEEcC-CCCCHHHHHHHHhc
Q 028546            8 AKYKLVFLGD-QSVGKTSIITRFMY   31 (207)
Q Consensus         8 ~~~~i~v~G~-~~sGKStli~~l~~   31 (207)
                      .++||.|+|. ..+|.+... .+..
T Consensus         2 ~p~KV~IiGA~G~VG~~la~-~l~~   25 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLY-SIGN   25 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHH-HHHT
T ss_pred             CceEEEEECCCCHHHHHHHH-HHHH
Confidence            4589999996 678887555 3443

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.86  E-value=0.25  Score=32.94  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028546           12 LVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        12 i~v~G~~~sGKStli~~l~~~   32 (207)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998754

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.33  E-value=0.2  Score=35.99  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =|+.++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            37899999999999998777644

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.27  E-value=0.32  Score=34.26  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             EEEEEEecCChhhhccc-cccccccCCEEEEEEECCChHHHHHHHHHHHHHHHhcC-CCCe-EEEEEeCCCCCCCCCCCH
Q 028546           58 VRLQLWDTAGQERFRSL-IPSYIRDSSVAVIVYDVANRQSFLNTSRWIEEVRTERG-GDVI-IVLVGNKTDLVDKRQVSI  134 (207)
Q Consensus        58 ~~~~i~D~~G~~~~~~~-~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-~ivv~nK~D~~~~~~~~~  134 (207)
                      +.+.++|+|+.-..... .......+|.++++.+.. ..++......+..+..... .+.. .-++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            56899999864322222 222234578888888764 4566665555555554332 1222 3478898875432    4


Q ss_pred             HHHHHHHHHhCCeEEE
Q 028546          135 EEGDGKAKEFGVMFIE  150 (207)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (207)
                      +..+.+.+.++.+++.
T Consensus       191 ~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             chhhhhHhhcCCeEEE
Confidence            4566677777776543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=84.26  E-value=4.8  Score=27.73  Aligned_cols=19  Identities=16%  Similarity=0.490  Sum_probs=16.0

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028546           11 KLVFLGDQSVGKTSIITRF   29 (207)
Q Consensus        11 ~i~v~G~~~sGKStli~~l   29 (207)
                      +|+|.|..|+||||+.-.|
T Consensus         3 ~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            5778999999999998544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.88  E-value=0.28  Score=30.59  Aligned_cols=22  Identities=9%  Similarity=0.253  Sum_probs=16.7

Q ss_pred             ceeE-EEEcCCCCCHHHHHHHHh
Q 028546            9 KYKL-VFLGDQSVGKTSIITRFM   30 (207)
Q Consensus         9 ~~~i-~v~G~~~sGKStli~~l~   30 (207)
                      +.++ ++.++.|+|||+++-.+.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            4555 567999999999886554

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=0.48  Score=33.59  Aligned_cols=39  Identities=18%  Similarity=0.089  Sum_probs=25.4

Q ss_pred             CEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCeE-EEEEeCCC
Q 028546           83 SVAVIVYDVANRQSFLNTSRWIEEVRTERGGDVII-VLVGNKTD  125 (207)
Q Consensus        83 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D  125 (207)
                      +.+++|.... ..+.....+.+..+...   ++|+ -+|+|+.-
T Consensus       199 t~~~lVt~pe-~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARLQ-KSTLQEVARTHLELAAI---GLKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEESC-HHHHHHHHHHHHHHHHH---TCCCEEEEEEEEC
T ss_pred             ceeeEecCcc-hhHHHHHHHHHHHHHhc---CCCceEEEEcCCc
Confidence            3566666554 46777777777777765   3444 57789863

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.64  E-value=0.29  Score=34.97  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028546           10 YKLVFLGDQSVGKTSIITRFMYD   32 (207)
Q Consensus        10 ~~i~v~G~~~sGKStli~~l~~~   32 (207)
                      =|+.++|.+|+|||+|+..+..+
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            37889999999999998765444

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.33  E-value=0.5  Score=31.84  Aligned_cols=23  Identities=4%  Similarity=0.013  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 028546            9 KYKLVFLGDQSVGKTSIITRFMY   31 (207)
Q Consensus         9 ~~~i~v~G~~~sGKStli~~l~~   31 (207)
                      ...+++-|++|+||+++...+..
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999987764