Citrus Sinensis ID: 028552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MMEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Secondary Structure (PSIPRED)
cccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHccccccccEEEEEEccccccccccccEEEEEEEccccccccccccccccccHccccccccccccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mmedqeekgnaengigrqkqvKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKvseqdvdsmesqpcftlckwassdngerssgeekslspqlrhrnnsqlseekvstrtgtpliLVDQQQRQKSLSVFgvlvspklrsAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Flexible Loop (DISEMBL)
mmedqeekgnaengigrqkqVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWassdngerssgeekslspqlrhrnnsqlseekvstrtgTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Low Complexity Region (SEG)
MMEDQEEKGNAENGIGRQKQVKDEYLLQFldsldgyltlldslsstlsQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Disordered region (IsUnstruct)
*********************KDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL*************PCFTLCKW*****************************************ILV*******SLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE***********
Disordered Region (DISOPRED)
***********************EYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHA*****IN**LLDLKVHAAAT****************************************************************************SVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE***********
Disordered Region (DISEMBL)
************NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL************QPCFTLCKWAS**********************************TGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Disordered Region (DISPRO)
*******************QVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASS***********************************************KSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q5EAR6	206	Coiled-coil domain-contai	yes	no	0.777	0.781	0.243	4e-08
Q8VE99	180	Coiled-coil domain-contai	yes	no	0.714	0.822	0.289	5e-06
Q96NT0	180	Coiled-coil domain-contai	yes	no	0.671	0.772	0.289	2e-05
Q3SZB5	180	Coiled-coil domain-contai	yes	no	0.714	0.822	0.295	0.0002

>sp|Q5EAR6|CC115_DANRE Coiled-coil domain-containing protein 115 OS=Danio rerio GN=ccdc115 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 20/181 (11%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRING----------ALLD 72
           DE LL F++ L+        L+S + +GW  +A AR++MG  +++           A ++
Sbjct: 10  DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69

Query: 73  LKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLS 132
             +    T+    E+  +  E Q   T+      D G + +G  + +  + +     +  
Sbjct: 70  TSLLEGGTAEFKCERSENKAEEQKTKTI-----EDIGAKETGLRRRVHTKQKEVKEGEQD 124

Query: 133 EEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTML 192
            ++V T+T +P       + +  L  FG+LV   L+ AQ +F+  +   VEIA+L +T+L
Sbjct: 125 TDEVKTKTDSPT-----PEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTIL 179

Query: 193 S 193
           +
Sbjct: 180 A 180

Danio rerio (taxid: 7955)

>sp|Q8VE99|CC115_MOUSE Coiled-coil domain-containing protein 115 OS=Mus musculus GN=Ccdc115 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 21/169 (12%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D   LQ L  L+       +L++ + +GWL LA AR+AMGA  + G L     +A+    
Sbjct: 11  DSKCLQLLSDLEELEAKRAALNARVEEGWLSLAKARYAMGAKSV-GPL----QYASRMEP 65

Query: 83  KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
           +V  +  ++ +    F + K A +   E     E S    LR R     ++E      G+
Sbjct: 66  QVCVRASEAQDGPQTFRVIK-ADAQTPEEVGPSEAS----LRRRKGPTKTKE-----LGS 115

Query: 143 PLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 191
            ++  D       L+ FG+LV   LR AQ SF   L+   +IA+L T +
Sbjct: 116 AVVPQD------PLNWFGILVPHSLRQAQASFRDGLQLAADIASLQTRI 158

Mus musculus (taxid: 10090)

>sp|Q96NT0|CC115_HUMAN Coiled-coil domain-containing protein 115 OS=Homo sapiens GN=CCDC115 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 30/169 (17%)

Query: 26  LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
           LL  L+ L+G  T+L++    + +GWL LA AR+AMGA  + G L     +A+    +V 
Sbjct: 17  LLGDLEELEGKRTVLNA---RVEEGWLSLAKARYAMGAKSV-GPL----QYASHMEPQVC 68

Query: 86  EQDVDSMESQPCFTLCK---WASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
               ++ E    F + +    A  + G R +G        LR R     + E  S+    
Sbjct: 69  LHASEAQEGLQKFKVVRAGVHAPEEVGPREAG--------LRRRKGPTKTPEPESS---- 116

Query: 143 PLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 191
                  +  Q  L+ FG+LV   LR AQ SF   L+   +IA+L   +
Sbjct: 117 -------EAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRI 158

Homo sapiens (taxid: 9606)

>sp|Q3SZB5|CC115_BOVIN Coiled-coil domain-containing protein 115 OS=Bos taurus GN=CCDC115 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 21/169 (12%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D  LLQ L  L+       +L++ + +GWL L+ AR+AMGA  + G L     +A+    
Sbjct: 11  DFVLLQLLGDLEQLEAKRQALNARVEEGWLSLSKARYAMGAKSV-GPL----QYASHMEP 65

Query: 83  KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGT 142
           +V    V + ESQ    L K+     G ++  E  S    LR R     + E  S+    
Sbjct: 66  QVR---VGTSESQDG--LQKFWMVRAGTQTPEEVGSREAALRRRKGLPRTPEPDSSPAP- 119

Query: 143 PLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 191
                     Q  L  FG+LV   LR AQ SF   L+   ++A+L + +
Sbjct: 120 ----------QNPLKWFGILVPHSLRQAQASFREGLQLAADMASLQSRI 158

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
147852293	225	hypothetical protein VITISV_041592 [Viti	0.980	0.902	0.584	2e-60
225457584	230	PREDICTED: uncharacterized protein LOC10	0.980	0.882	0.571	2e-60
224086062	220	predicted protein [Populus trichocarpa]	0.966	0.909	0.588	3e-55
297850496	215	hypothetical protein ARALYDRAFT_472313 [	0.855	0.823	0.578	3e-48
15218031	215	uncharacterized protein [Arabidopsis tha	0.937	0.902	0.516	5e-47
449455627	245	PREDICTED: uncharacterized protein LOC10	0.869	0.734	0.580	3e-46
255539264	212	conserved hypothetical protein [Ricinus	0.816	0.797	0.543	4e-42
388502112	207	unknown [Lotus japonicus]	0.821	0.821	0.505	3e-41
356572146	162	PREDICTED: coiled-coil domain-containing	0.739	0.944	0.491	2e-39
218195188	228	hypothetical protein OsI_16595 [Oryza sa	0.942	0.855	0.454	2e-36

>gi|147852293|emb|CAN80128.1| hypothetical protein VITISV_041592 [Vitis vinifera]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/219 (58%), Positives = 163/219 (74%), Gaps = 16/219 (7%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           MEDQ++   +EN +  ++  ++E ++ FLDS+D YLTL+DSLSSTL QGWLELASARH+M
Sbjct: 1   MEDQDKARTSENQLEEEQLDEEENVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSM 60

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGE------ 115
           GASRI+ +L DLK+H+AATSL+V+E DVDS  +QP FTLCKWASSDNG+  SGE      
Sbjct: 61  GASRISSSLFDLKLHSAATSLRVTEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGD 120

Query: 116 ---EKSLSPQLRHRNNSQLSE-----EKVSTRTGTPLILVD--QQQRQKSLSVFGVLVSP 165
              +KS+S QLR+R  SQ  E     EK  T  G+PL L    Q+QR KSLSVFG LVSP
Sbjct: 121 ELQKKSVSXQLRYRGTSQXDEPQEIQEKSPTSNGSPLSLDSPVQKQRHKSLSVFGTLVSP 180

Query: 166 KLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELEN 204
           KLR+AQ SFE ALE +VEIAN+ ++MLS F+QV K++E+
Sbjct: 181 KLRAAQFSFETALEXIVEIANMRSSMLSAFDQVQKDIES 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457584|ref|XP_002273059.1| PREDICTED: uncharacterized protein LOC100263247 [Vitis vinifera] gi|297745570|emb|CBI40735.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 162/224 (72%), Gaps = 21/224 (9%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           MEDQ++    EN +  ++  ++E ++ FLDS+D YLTL+DSLSSTL QGWLELASARH+M
Sbjct: 1   MEDQDKARTCENQLEEEQLDEEENVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSM 60

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGE------ 115
           GASRI+ +L DLK+H+AATSL+V+E DVDS  +QP FTLCKWASSDNG+  SGE      
Sbjct: 61  GASRISSSLFDLKLHSAATSLRVTEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGD 120

Query: 116 ---EKSLSPQLRHRNNSQLSEE----------KVSTRTGTPLILVD--QQQRQKSLSVFG 160
              +KS+S QLR+R  SQ  E           K  T  G+PL L    Q+QR KSLSVFG
Sbjct: 121 ELQKKSVSSQLRYRGTSQFDEPQEIQEKSPTCKSPTSNGSPLSLDSPVQKQRHKSLSVFG 180

Query: 161 VLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELEN 204
            LVSPKLR+AQ SFE ALET+VEIAN+ ++MLS F+QV K++E+
Sbjct: 181 TLVSPKLRAAQFSFETALETIVEIANMRSSMLSAFDQVQKDIES 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086062|ref|XP_002307800.1| predicted protein [Populus trichocarpa] gi|222857249|gb|EEE94796.1| predicted protein [Populus trichocarpa]

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 126/214 (58%), Positives = 161/214 (75%), Gaps = 14/214 (6%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           ME+QEE    E  I  +K V DE +L+F+DS D YLTLLDSLSSTL QGWL+LA AR +M
Sbjct: 1   MEEQEEATGFE--IEVRKVVGDEDVLRFMDSTDSYLTLLDSLSSTLRQGWLDLAIARQSM 58

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNG-----ERSSGEE 116
           GASRINGALLD K+H+AATS++V ++DVDSME+QP F L KWAS  +G     E+  GE+
Sbjct: 59  GASRINGALLDHKLHSAATSVQVDQEDVDSMEAQPRFILRKWASVADGKQCYEEQKLGED 118

Query: 117 ----KSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKS--LSVFGVLVSPKLRSA 170
               KS S QLRHR +SQLSEEK S  +G  L + DQ Q++++  LS+FG L+SPKLR+A
Sbjct: 119 KLPGKSGSLQLRHRGDSQLSEEKTS-ESGAQLDVDDQVQKERAKLLSMFGTLISPKLRAA 177

Query: 171 QLSFERALETLVEIANLHTTMLSMFEQVHKELEN 204
           QLSFE ALETLV+IAN+ + MLS +++V KEL++
Sbjct: 178 QLSFETALETLVKIANMRSAMLSSYDRVRKELDH 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850496|ref|XP_002893129.1| hypothetical protein ARALYDRAFT_472313 [Arabidopsis lyrata subsp. lyrata] gi|297338971|gb|EFH69388.1| hypothetical protein ARALYDRAFT_472313 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/190 (57%), Positives = 137/190 (72%), Gaps = 13/190 (6%)

Query: 19  KQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAA 78
           K+  DE +LQFLDSLDGYLTL+DSL+S L +GW +LASARH+MG  RIN  LLDLK H A
Sbjct: 26  KEGGDENVLQFLDSLDGYLTLMDSLNSKLREGWFDLASARHSMGTLRINSTLLDLKYHPA 85

Query: 79  ATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGERSSGEEKS-----LSPQLRHRNNSQ 130
           A++L+V++Q+V+S+ S P F L KWAS   S  G+  S +  S     LSPQLRHR    
Sbjct: 86  ASTLQVTDQEVESLGSVPHFALSKWASKGGSGKGKDLSTDTDSEIGSPLSPQLRHRG--- 142

Query: 131 LSEEKVSTRTGTPLILVDQ--QQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLH 188
            SEEK S +  T L+  ++  ++R KSLSVFG LVSPKLR AQLSFE ALETLVEIAN+ 
Sbjct: 143 FSEEKPSAKDETILVADEEIKKERAKSLSVFGGLVSPKLRGAQLSFETALETLVEIANMR 202

Query: 189 TTMLSMFEQV 198
            +MLS FE++
Sbjct: 203 ASMLSAFERI 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218031|ref|NP_173500.1| uncharacterized protein [Arabidopsis thaliana] gi|8886946|gb|AAF80632.1|AC069251_25 F2D10.26 [Arabidopsis thaliana] gi|38454150|gb|AAR20769.1| At1g20770 [Arabidopsis thaliana] gi|41349930|gb|AAS00350.1| At1g20770 [Arabidopsis thaliana] gi|332191899|gb|AEE30020.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/215 (51%), Positives = 146/215 (67%), Gaps = 21/215 (9%)

Query: 2   MEDQEEKGNAENGIGRQKQVK--------DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLE 53
           M +  E+G+    + ++ +VK        DE +LQFLDSLDGYLTL+DS++S L +GW +
Sbjct: 1   MAEIYEEGDESVDVNKESEVKTELGKGGGDENVLQFLDSLDGYLTLMDSVNSKLREGWFD 60

Query: 54  LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGE 110
           LASARH+MG  RIN  LLDLK H A+++L+V++QDV+S+ S P F L KWAS   S  G+
Sbjct: 61  LASARHSMGTLRINSTLLDLKYHPASSTLQVTDQDVESLGSVPHFALSKWASKGGSRKGK 120

Query: 111 RSSGEEKS-----LSPQLRHRNNSQLSEEKVSTRTGTPLILVDQ--QQRQKSLSVFGVLV 163
             S +  S     LSPQLRHR    +SEEK S +  T L   ++  ++R KSLSVFG LV
Sbjct: 121 DFSTDTDSEIGSPLSPQLRHRG---VSEEKPSAKDETVLAADEEIKKERAKSLSVFGGLV 177

Query: 164 SPKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 198
           SPKLR AQ SFE ALETLVEIAN+  +M+S FE++
Sbjct: 178 SPKLRGAQQSFETALETLVEIANMRASMISAFERI 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455627|ref|XP_004145554.1| PREDICTED: uncharacterized protein LOC101206061 [Cucumis sativus] gi|449485105|ref|XP_004157071.1| PREDICTED: uncharacterized LOC101206061 [Cucumis sativus]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 134/193 (69%), Gaps = 13/193 (6%)

Query: 26  LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
           LLQFLDS D YL LLD+LS+TL QGW ELASARH+MG SRI+ ALLD+K H+AATSL+V 
Sbjct: 40  LLQFLDSTDDYLNLLDALSATLRQGWFELASARHSMGTSRISTALLDMKNHSAATSLRVD 99

Query: 86  EQDVDSMESQPCFTLCKWASSDNGERSSGEEK--------SLSPQLRHRNNSQLSEE--K 135
           E+D  S+  QP   L KW SS+ G+ S GEEK        S SPQLR RN S LS+   K
Sbjct: 100 ERDDGSVGMQPFINLRKWTSSEGGD-SLGEEKYNDKLQRESGSPQLRQRNVSDLSDNLGK 158

Query: 136 VSTRTGTPLILVDQQQRQKS--LSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLS 193
            S +    LI+ DQ Q+++S  LS FG LVSPKLR AQLSFE ALE +VEIAN    MLS
Sbjct: 159 SSLKKEDALIVDDQVQKERSRTLSTFGTLVSPKLRLAQLSFENALELIVEIANKRIAMLS 218

Query: 194 MFEQVHKELENTN 206
            F++V K  E+T+
Sbjct: 219 SFDEVKKGSEDTS 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539264|ref|XP_002510697.1| conserved hypothetical protein [Ricinus communis] gi|223551398|gb|EEF52884.1| conserved hypothetical protein [Ricinus communis]

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/184 (54%), Positives = 134/184 (72%), Gaps = 15/184 (8%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D+ +LQFLDS+D YLTL DSLSSTL QGWLELASARH+MGA R+N +LLDLK H A+TSL
Sbjct: 35  DDNVLQFLDSVDSYLTLFDSLSSTLRQGWLELASARHSMGALRLNSSLLDLKSHPASTSL 94

Query: 83  KVSEQDVDSMESQPCFTLCKWAS-SDNGERSSGE---EKSLSPQLRHRNNSQLSEEKVST 138
           ++++      E +P F L KW S  D  E+++ +   EKS +PQL   +  + S ++ S+
Sbjct: 95  QLTKH----HEGEPQFILRKWLSLGDCDEQNTNDDLLEKSGTPQL---SEEETSPKQASS 147

Query: 139 RTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 198
           +    +    Q++R +SLSVFG LVSPKLR+AQLSFE ALET+VEIAN+ + MLS F++V
Sbjct: 148 KADDKV----QKERSRSLSVFGTLVSPKLRAAQLSFETALETVVEIANMRSAMLSAFDRV 203

Query: 199 HKEL 202
           H+EL
Sbjct: 204 HEEL 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502112|gb|AFK39122.1| unknown [Lotus japonicus]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 127/190 (66%), Gaps = 20/190 (10%)

Query: 21  VKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT 80
            +D+  LQF+DS+  YL+L D+LSSTL QGWL+LASARH+MGASRIN +LLDLK H AAT
Sbjct: 31  AEDKLALQFMDSVHNYLSLFDALSSTLGQGWLDLASARHSMGASRINSSLLDLKFHPAAT 90

Query: 81  SLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRT 140
           + K+    V     QPCF L KW SS++ E S  E+K          N +L +       
Sbjct: 91  TSKI----VKYQGEQPCFMLRKWVSSEH-ENSQLEDK----------NGKLQDSSAEVTA 135

Query: 141 GTPLI-LVD----QQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMF 195
              L  L D    Q++R KSLSVFG+L+SPKLRS QLSFE+ALETL+E+AN+ ++++  F
Sbjct: 136 ANNLSGLADDEEVQKERSKSLSVFGILISPKLRSTQLSFEKALETLIELANMRSSLIHSF 195

Query: 196 EQVHKELENT 205
            Q+H+E E+T
Sbjct: 196 HQLHRETEDT 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572146|ref|XP_003554231.1| PREDICTED: coiled-coil domain-containing protein 115 [Glycine max]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/183 (49%), Positives = 127/183 (69%), Gaps = 30/183 (16%)

Query: 30  LDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDV 89
           +DS+D YL+L D++SSTL QGW +LASARH+MGASRIN +LLDLK H+AAT+LK++  D 
Sbjct: 1   MDSMDNYLSLFDAVSSTLRQGWFDLASARHSMGASRINSSLLDLKFHSAATTLKITNYD- 59

Query: 90  DSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLI---L 146
               +QPCF L KW SS++                   +SQL +E V ++ G+ +    L
Sbjct: 60  ---GTQPCFMLRKWVSSEH------------------ESSQLEDENVQSQDGSSVKSSGL 98

Query: 147 VD----QQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL 202
           V+    Q +R KSLS+FGVL+SPKLR++QLSFE+ALETL+EIAN+ +++L  F Q+ + +
Sbjct: 99  VENAEVQNERSKSLSIFGVLISPKLRASQLSFEKALETLIEIANMQSSLLYSFHQL-RRV 157

Query: 203 ENT 205
           E+T
Sbjct: 158 EDT 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195188|gb|EEC77615.1| hypothetical protein OsI_16595 [Oryza sativa Indica Group]

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 123/207 (59%), Gaps = 12/207 (5%)

Query: 6   EEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASR 65
           EE   A  G GR  +  D+ +L+F+DS+DGYL L+DSLSS L  GWL+LASARH+MG SR
Sbjct: 23  EEVDEATEG-GRLGRGDDDEILRFMDSVDGYLLLMDSLSSVLRPGWLDLASARHSMGTSR 81

Query: 66  INGALLDLKVHAAATSLKVSEQ-DVDSMESQPCFTLCKWA--SSDNGERSSGEEKSLSPQ 122
           ++  L D K  +AA+ L+V +  D  S E  P F L KW      N   + G   +  P+
Sbjct: 82  VSSTLFDHKEQSAASKLQVVDSADSQSSEPNPHFILSKWCLQEKSNSNDAVGVRDTTKPK 141

Query: 123 LRHRNNSQLSEEKVSTRTGTP---LILVD-----QQQRQKSLSVFGVLVSPKLRSAQLSF 174
           LR+R ++   E+       TP      VD     Q+ R K+LS FG LVSPKLRSAQ+SF
Sbjct: 142 LRYRGSAATPEDGSHDSDATPAESATSVDTSSHVQKARSKALSTFGALVSPKLRSAQMSF 201

Query: 175 ERALETLVEIANLHTTMLSMFEQVHKE 201
           E ALE +VE+AN  + MLS F Q+  E
Sbjct: 202 ETALELIVELANSRSDMLSSFSQIKGE 228

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2030447	215	AT1G20770 "AT1G20770" [Arabido	0.937	0.902	0.451	7.2e-36
ZFIN|ZDB-GENE-050227-20	206	zgc:113121 "zgc:113121" [Danio	0.845	0.849	0.224	8.1e-07

TAIR|locus:2030447 AT1G20770 "AT1G20770" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 97/215 (45%), Positives = 129/215 (60%)

Query:     2 MEDQEEKGNAENGIGRQKQVK--------DEYLLQFXXXXXXXXXXXXXXXXXXXQGWLE 53
             M +  E+G+    + ++ +VK        DE +LQF                   +GW +
Sbjct:     1 MAEIYEEGDESVDVNKESEVKTELGKGGGDENVLQFLDSLDGYLTLMDSVNSKLREGWFD 60

Query:    54 LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGE 110
             LASARH+MG  RIN  LLDLK H A+++L+V++QDV+S+ S P F L KWAS   S  G+
Sbjct:    61 LASARHSMGTLRINSTLLDLKYHPASSTLQVTDQDVESLGSVPHFALSKWASKGGSRKGK 120

Query:   111 RSSGEEKS-----LSPQLRHRNNSQLSEEKVSTRTGTPLILVDQ--QQRQKSLSVFGVLV 163
               S +  S     LSPQLRHR    +SEEK S +  T L   ++  ++R KSLSVFG LV
Sbjct:   121 DFSTDTDSEIGSPLSPQLRHRG---VSEEKPSAKDETVLAADEEIKKERAKSLSVFGGLV 177

Query:   164 SPKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 198
             SPKLR AQ SFE ALETLVEIAN+  +M+S FE++
Sbjct:   178 SPKLRGAQQSFETALETLVEIANMRASMISAFERI 212

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050227-20 zgc:113121 "zgc:113121" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 8.1e-07, P = 8.1e-07
 Identities = 42/187 (22%), Positives = 83/187 (44%)

Query:    23 DEYLLQFXXXXXXXXXXXXXXXXXXXQGWLELASARHAMGASRINGALLDLKVHAAA--- 79
             DE LL F                   +GW  +A AR++MG  +++      ++   A   
Sbjct:    10 DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69

Query:    80 TSLK---VSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKV 136
             TSL     +E   +  E++      K    D G + +G  + +  + +     +   ++V
Sbjct:    70 TSLLEGGTAEFKCERSENKAEEQKTK-TIEDIGAKETGLRRRVHTKQKEVKEGEQDTDEV 128

Query:   137 STRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE 196
              T+T +P       + +  L  FG+LV   L+ AQ +F+  +   VEIA+L +T+L+  +
Sbjct:   129 KTKTDSPT-----PEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTILATRK 183

Query:   197 QVHKELE 203
             ++  +++
Sbjct:   184 EMQVQMK 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.339    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       188   0.00087  110 3  11 23  0.37    33
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  144 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.47u 0.13s 17.60t   Elapsed:  00:00:01
  Total cpu time:  17.47u 0.13s 17.60t   Elapsed:  00:00:01
  Start:  Sat May 11 01:21:25 2013   End:  Sat May 11 01:21:26 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00051580 hypothetical protein (220 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PRK00373	204	V-type ATP synthase subunit D; Reviewed	98.22
PF01813	196	ATP-synt_D: ATP synthase subunit D ; InterPro: IPR	98.16
TIGR00309	209	V_ATPase_subD H(+)-transporting ATP synthase, vacu	97.91
COG1394	211	NtpD Archaeal/vacuolar-type H+-ATPase subunit D [E	97.56
KOG1647	255	consensus Vacuolar H+-ATPase V1 sector, subunit D	97.55
PRK02195	201	V-type ATP synthase subunit D; Provisional	97.48

>PRK00373 V-type ATP synthase subunit D; Reviewed

Probab=98.22  E-value=1.5e-05  Score=67.07  Aligned_cols=139  Identities=23%  Similarity=0.383  Sum_probs=94.7

Q ss_pred             cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhh-hhhhceeeeecccc
Q 028552           11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDV   89 (207)
Q Consensus        11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~-~~~~~~v~v~~~~~   89 (207)
                      +.++..-++..-|.++.+++.+++++..++..+...+.+.|++|+.|++.+|...+..    ... ......|.+...-+
T Consensus        23 a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~----~~~~~~~~~~v~~~~~ni   98 (204)
T PRK00373         23 AERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEE----AAASPKESLEVDVSSKNI   98 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH----HHhCCCCCceEEEEeEEE
Confidence            3445555667779999999999999999999999999999999999999999754431    000 01112232222100


Q ss_pred             ccCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHH
Q 028552           90 DSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLR  168 (207)
Q Consensus        90 ~~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR  168 (207)
                      -+ -..|.|...      .                                       ......+|   ||.+ +|+.+.
T Consensus        99 ~G-V~vP~~~~~------~---------------------------------------~~~~~~~~---y~~~~t~~~~d  129 (204)
T PRK00373         99 MG-VVVPVIELS------V---------------------------------------KRTLPERG---YGFLGTSAELD  129 (204)
T ss_pred             EE-EEeceEEee------c---------------------------------------ccCCccCC---cCcccCCHHHH
Confidence            00 011111110      0                                       00000122   5665 799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          169 SAQLSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       169 ~AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      .|-..|..+++.++++|+++..+..+..+|+++.
T Consensus       130 ~a~~~~~~~l~~li~lA~~e~~~~~L~~ei~kT~  163 (204)
T PRK00373        130 EAAEKFEELLEKILELAEVEKTIQLLADEIEKTK  163 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998764

>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.16  E-value=1.1e-05  Score=67.33  Aligned_cols=139  Identities=24%  Similarity=0.377  Sum_probs=88.2

Q ss_pred             ccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhh-hhceeeeeccccc
Q 028552           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHA-AATSLKVSEQDVD   90 (207)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~-~~~~v~v~~~~~~   90 (207)
                      +++..-++...|.++.+++.++++|..++..+...+.+.|+.|+.|++.+|...+..    ..... ....|.+...-+-
T Consensus        14 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~ni~   89 (196)
T PF01813_consen   14 KRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSS----VAESVPESVEVEVKERNIM   89 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH----HHTS-S---EEEEEEEEET
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH----HHhcCCCCcEEEEEEEEEE
Confidence            444555667779999999999999999999999999999999999999988654432    11000 0112222221000


Q ss_pred             cCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHH
Q 028552           91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRS  169 (207)
Q Consensus        91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~  169 (207)
                      + -..|.|....                                               .....|..-+|.+ .|+.+-.
T Consensus        90 G-V~vP~~~~~~-----------------------------------------------~~~~~~~~~y~~~~~~~~~d~  121 (196)
T PF01813_consen   90 G-VRVPVLEVKE-----------------------------------------------VRRPFPSPPYGLLGTPPWLDE  121 (196)
T ss_dssp             T-EEEEEEEEE-------------------------------------------------GGTTS------TT--HHHHH
T ss_pred             E-EEeceEEeee-----------------------------------------------cccccccccCCcccCCHHHHH
Confidence            0 0011111100                                               0011222334443 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          170 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       170 AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      |...|..+++.++++|+++..+..+..+|+++.
T Consensus       122 a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~  154 (196)
T PF01813_consen  122 AREKFEELLELLIELAELETALRRLAEEIRKTQ  154 (196)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.

>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D

Probab=97.91  E-value=0.00015  Score=61.25  Aligned_cols=142  Identities=22%  Similarity=0.306  Sum_probs=92.9

Q ss_pred             cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhceeeeeccccc
Q 028552           11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVD   90 (207)
Q Consensus        11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~~v~v~~~~~~   90 (207)
                      +.++..-++..-|.++.+++.+++++..++..+...+.+.|++|+.|++..|...+..-.  .........|.+...-+-
T Consensus        21 a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~v~~~~~~v~~~~~ni~   98 (209)
T TIGR00309        21 AKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAA--LSVVTARFEVDMKSKNIM   98 (209)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH--hcCCcccceEEEEEEEEe
Confidence            344555566777999999999999999999999999999999999999998864321100  000000011212110000


Q ss_pred             cCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHH
Q 028552           91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRS  169 (207)
Q Consensus        91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~  169 (207)
                      + -..|.|+.+.     .                               .        .. ..+|.  +|.+ +|+.+-.
T Consensus        99 G-V~vP~~~~~~-----~-------------------------------~--------~~-~~~~~--y~l~~t~~~~d~  130 (209)
T TIGR00309        99 G-VVVPVFDSYE-----I-------------------------------R--------RK-VHERG--YGLLFTSYKVDE  130 (209)
T ss_pred             e-EEcceeEeec-----c-------------------------------c--------cC-ccccC--cCcccCCHHHHH
Confidence            0 0111121110     0                               0        00 00122  5654 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          170 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       170 AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      |=..|..+++.+|++|+++..+..+..+|+++.
T Consensus       131 a~~~~~~~l~~li~lA~~e~~~~~L~~eI~~T~  163 (209)
T TIGR00309       131 AAEIYEEAVELIVELAEIETTIRLLAEEIEITK  163 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764

Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.

>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]

Probab=97.56  E-value=0.0018  Score=55.09  Aligned_cols=136  Identities=25%  Similarity=0.314  Sum_probs=96.0

Q ss_pred             cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhc-eeeeeccc-
Q 028552           11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT-SLKVSEQD-   88 (207)
Q Consensus        11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~-~v~v~~~~-   88 (207)
                      ++.+..-++..=|.++.+|..++++|..++..+.+.+.+.|.+++-|-+.+|...+-.      +..... .+.|+... 
T Consensus        22 a~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~------~~~~~~~~~~v~~~~~   95 (211)
T COG1394          22 ARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEE------IALVQKEKLEVDVDVE   95 (211)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH------HHhCCCCCceeeecee
Confidence            3444555666779999999999999999999999999999999999999999765421      111111 11111100 


Q ss_pred             -cccCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCcccccc-CCCChh
Q 028552           89 -VDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFG-VLVSPK  166 (207)
Q Consensus        89 -~~~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG-~LvP~s  166 (207)
                       +-+ -..|.|...                                                 ....|..-|| +-+|+.
T Consensus        96 nI~G-V~vP~~~~~-------------------------------------------------~~~~~~~~~~~~~t~~~  125 (211)
T COG1394          96 NIMG-VVVPTFELV-------------------------------------------------ELTPPPYDLGILSTSAW  125 (211)
T ss_pred             eeee-eeeeeeeee-------------------------------------------------ccCCCcccccccCCcHH
Confidence             000 001111110                                                 0124556677 339999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          167 LRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       167 LR~AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      |=.|=..|..+|+.+|++|.++..+.-+.++|+++-
T Consensus       126 ld~a~~~~~elle~li~lae~e~~~~~L~~Ei~~T~  161 (211)
T COG1394         126 LDEAIEKFEELLEKLIELAELETTLRLLLEEIRKTK  161 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998764

>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]

Probab=97.55  E-value=0.0035  Score=53.49  Aligned_cols=133  Identities=18%  Similarity=0.226  Sum_probs=86.4

Q ss_pred             hhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhh--ceeeeeccccccCCC
Q 028552           17 RQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA--TSLKVSEQDVDSMES   94 (207)
Q Consensus        17 ~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~--~~v~v~~~~~~~~~~   94 (207)
                      -++-..|.+.++|=+++..|..-...+...++..+|+||.|+|.+|+-  +     .+.....  .+|.|-...    ++
T Consensus        32 LLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn~--~-----~~v~q~v~~a~v~vRsk~----en  100 (255)
T KOG1647|consen   32 LLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGNF--K-----HQVQQNVKQATVKVRSKK----EN  100 (255)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----HHHHhhhhhheeeeeeec----cc
Confidence            344566999999999999999999999999999999999999998852  2     2222111  123332211    22


Q ss_pred             CCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCCCChhHHHHHHHH
Q 028552           95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVLVSPKLRSAQLSF  174 (207)
Q Consensus        95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~LvP~sLR~AQ~~F  174 (207)
                      ...+.+....+..+                                         ....-||.-.|- --+++..|...|
T Consensus       101 v~GV~Lp~fe~~~d-----------------------------------------g~~~~~LtgL~r-gGqqv~~~r~~Y  138 (255)
T KOG1647|consen  101 VSGVKLPTFELYQD-----------------------------------------GIDAFPLTGLGR-GGQQVARLRENY  138 (255)
T ss_pred             cceeeechhhhhcc-----------------------------------------cCcccccccccc-chHHHHHHHHHH
Confidence            22222221111000                                         001134433211 348899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          175 ERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       175 ~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      .+||+.+|++|++|.....+-.-|+.++
T Consensus       139 ~kAve~LVelasLqtsf~~Lde~ik~TN  166 (255)
T KOG1647|consen  139 TKAVELLVELASLQTSFRTLDEAIKVTN  166 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999877766665443

>PRK02195 V-type ATP synthase subunit D; Provisional

Probab=97.48  E-value=0.0036  Score=52.82  Aligned_cols=131  Identities=8%  Similarity=0.000  Sum_probs=91.7

Q ss_pred             cccccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhceeeeeccccc
Q 028552           11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVD   90 (207)
Q Consensus        11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~~v~v~~~~~~   90 (207)
                      ++++..-++..-|.++..++++++++..++..+...+...|..|+-|+-.+|.....        .. ...|.+...-+=
T Consensus        22 a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~~~~--------~~-~~~v~~~~~nim   92 (201)
T PRK02195         22 LERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFDEDL--------IK-VKKVEKDYENIA   92 (201)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhc--------CC-cceEEEeeeeEe
Confidence            344455566677899999999999999999999999999999999999888764100        00 012222110000


Q ss_pred             cCCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHH
Q 028552           91 SMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRS  169 (207)
Q Consensus        91 ~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~  169 (207)
                      + -..|.|...                                                   ..+...||.+ +|+.+=.
T Consensus        93 G-V~vP~~~~~---------------------------------------------------~~~~~~Y~~~~t~~~lD~  120 (201)
T PRK02195         93 G-VEVPILDSI---------------------------------------------------EFEIIEYSLLNTPIWVDT  120 (201)
T ss_pred             e-eeeceeeee---------------------------------------------------ecCCCCcCCccCCHHHHH
Confidence            0 001111110                                                   0122337777 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          170 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       170 AQ~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      |=..|..+++.++++|+++..+..+..+|+++-
T Consensus       121 a~~~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~  153 (201)
T PRK02195        121 GIELLKELVQLKIEAEVLQERLLLLEEELRKTT  153 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 37/283 (13%), Positives = 73/283 (25%), Gaps = 90/283 (31%)

Query: 4   DQEEKGNAENGI-----GRQKQVKDEYLLQFLDSL----DGYLTLLDSLSSTLSQGWLEL 54
             + +   +  I             E +L+ L  L    D   T     SS +      +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 55  ASA-RHAMGASRINGALLDL------KVHAA----------------ATSLKVS-EQDVD 90
            +  R  + +      LL L      K   A                   L  +    + 
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 91  SMESQPCFT-------LCKWASSDNGERSSGEEKSLSPQL------------------RH 125
                   T       L K+      +    E  + +P+                   +H
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 126 RNNSQLSEE-KVSTRTGTPLILVDQQQRQKSLSVF--GVLVSP----------------- 165
            N  +L+   + S     P    + ++    LSVF     +                   
Sbjct: 350 VNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 166 ---KLRSAQLSFERALETLVEIANLHTTMLSMFE---QVHKEL 202
              KL    L  ++  E+ + I +++  +    E    +H+ +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3aon_A	217	V-type sodium ATPase subunit D; V-ATPase, coiled-c	98.1
3a5c_G	223	V-type ATP synthase subunit D; V-ATPase, asymmetri	97.84

>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=98.10  E-value=1.6e-05  Score=66.44  Aligned_cols=139  Identities=19%  Similarity=0.252  Sum_probs=92.1

Q ss_pred             cccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhh-hhhhceeeeecccccc
Q 028552           13 NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDVDS   91 (207)
Q Consensus        13 ~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~-~~~~~~v~v~~~~~~~   91 (207)
                      ++..=++..-|.|+.+|+++++++..++..+...+...|++|+.|++.+|...+..    ... ......|.+...-+-+
T Consensus        31 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~nImG  106 (217)
T 3aon_A           31 RGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE----LLALPAENVSISVVEKNIMS  106 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHTSCSCCCEEEEEEEEETT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH----HHhCCCCceEEEEEEEEEEE
Confidence            34444566679999999999999999999999999999999999999998643321    000 0001123222210000


Q ss_pred             CCCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHHH
Q 028552           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRSA  170 (207)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~A  170 (207)
                       -..|.|....     .                                       .......|  -||.+ .|+.+-.|
T Consensus       107 -V~vP~~~~~~-----~---------------------------------------~~~~~~~~--~ygl~~t~~~ld~a  139 (217)
T 3aon_A          107 -VKVPLMNFQY-----D---------------------------------------ETLNETPL--EYGYLHSNAELDRS  139 (217)
T ss_dssp             -EEEEEEEEEC-----C---------------------------------------GGGTTSCC--CCCCTTCCHHHHHH
T ss_pred             -EEeceEEEEe-----c---------------------------------------ccccCCcC--CcCcccCCHHHHHH
Confidence             0111221110     0                                       00000011  25665 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          171 QLSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       171 Q~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      -..|..+++.+|++|+++..+..+-.+|+++.
T Consensus       140 ~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~  171 (217)
T 3aon_A          140 IDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTR  171 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998764

>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*

Probab=97.84  E-value=1.5e-05  Score=66.90  Aligned_cols=135  Identities=18%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             cccchhhhhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccchhhhhhhceeeeeccccccC
Q 028552           13 NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSM   92 (207)
Q Consensus        13 ~~~~~~~~~~D~lll~~L~lLd~Y~~l~~~L~~~~~~G~~~LArArys~G~~r~g~d~~Dl~~~~~~~~v~v~~~~~~~~   92 (207)
                      ++..=++..-|.|+.+|+++++++..++..+...+...|++|+.|++.+|...+..-.  .... ....|.+...     
T Consensus        23 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~~~-~~~~v~~~~~-----   94 (223)
T 3a5c_G           23 KGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAA--LGVP-PLEGVEAEVE-----   94 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH--hcCC-CCeEEEEEEE-----
Confidence            3444456667999999999999999999999999999999999999999975443200  0000 0011111110     


Q ss_pred             CCCCeeEEeeccccCCCCCCCCccCCCchhhhccCCCcCccccccCCCCCcccccccccccCccccccCC-CChhHHHHH
Q 028552           93 ESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEEKVSTRTGTPLILVDQQQRQKSLSVFGVL-VSPKLRSAQ  171 (207)
Q Consensus        93 ~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ  171 (207)
                       +.-.+.+                    |.+..                       ......|   ||.+ .|+.+-.|-
T Consensus        95 -nImGV~v--------------------P~~~~-----------------------~~~~~~~---ygl~~t~~~ld~a~  127 (223)
T 3a5c_G           95 -NVWGSKV--------------------PRLKA-----------------------TFPDGAL---LSPVGTPAYTLEAS  127 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -EEEEEEe--------------------ceEEe-----------------------ccCCCCC---cCcccCCHHHHHHH
Confidence             0000000                    00000                       0000012   5665 899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028552          172 LSFERALETLVEIANLHTTMLSMFEQVHKEL  202 (207)
Q Consensus       172 ~~F~~ale~~velanlq~~i~~~~~~l~~~~  202 (207)
                      ..|..+++.+|++|+++..+..+-.+|+++.
T Consensus       128 ~~~~~~l~~lvelA~le~~~~~L~~eIkkT~  158 (223)
T 3a5c_G          128 RAFRRYAEALIRVANTETRLKKIGEEIKKTT  158 (223)
T ss_dssp             ----CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00