Citrus Sinensis ID: 028556

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccEEEEcccEEEEEccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccEEEcccEEEEEEccccccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEccccHHccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHHccHHcccccccEEEccccEEEEEEEccccccccccccccccHHEEHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgngtstppeatVYGLYqcrgdlkttdcsRCIESAVNQISLvcpytygaslqlegcyvRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAqclgdltpadcTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWAsgyydltdsshddqvgKTVAIIVGVVAGLAILIVFLSICRRAMER
Flexible Loop (DISEMBL)
mgngtstppeaTVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Low Complexity Region (SEG)
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTvaiivgvvaglailivFLSICRRAMER
Disordered region (IsUnstruct)
***********TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICR*****
Disordered Region (DISOPRED)
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWAS*******************IIVGVVAGLAILIVFLSICRRAMER
Disordered Region (DISEMBL)
********PEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Disordered Region (DISPRO)
*******PPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAME*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q6NKQ9	279	Cysteine-rich repeat secr	yes	no	0.937	0.695	0.680	2e-77
Q9ZU94	288	Cysteine-rich repeat secr	no	no	0.985	0.708	0.421	3e-43
Q0WPN8	298	Cysteine-rich repeat secr	no	no	0.859	0.597	0.450	1e-39
Q8GUJ2	299	Cysteine-rich repeat secr	no	no	0.961	0.665	0.382	2e-33
O22784	304	Cysteine-rich repeat secr	no	no	0.917	0.625	0.306	6e-20
Q6NM73	307	Cysteine-rich repeat secr	no	no	0.913	0.615	0.296	5e-19
Q8GXV7	303	Cysteine-rich repeat secr	no	no	0.980	0.669	0.269	1e-18
Q9LV60	263	Cysteine-rich repeat secr	no	no	0.826	0.650	0.317	6e-17
Q9SH41	284	Putative cysteine-rich re	no	no	0.719	0.524	0.303	4e-15
Q9CAC7	305	Cysteine-rich repeat secr	no	no	0.787	0.534	0.280	5e-14

>sp|Q6NKQ9|CRR15_ARATH Cysteine-rich repeat secretory protein 15 OS=Arabidopsis thaliana GN=CRRSP15 PE=2 SV=1

 Score =  288 bits (736), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 171/197 (86%), Gaps = 3/197 (1%)

Query: 13  VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTS 72
           V+GLYQCR DL+++DCS+CI+++V+QI+L+CPY+YGASLQLEGC++RYE  DFLGK DTS
Sbjct: 83  VFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLRYETNDFLGKPDTS 142

Query: 73  IWYKKCS-KSVNNDVEFFKRRDDVLADLQ-TAVSFKVSSSGFVEGFAQCLGDLTPADCTT 130
           + YKKCS KSV ND +FFKRRDDVL+DL+ T + +KVS SG VEG+AQC+GDL+P+DCT 
Sbjct: 143 LRYKKCSSKSVENDYDFFKRRDDVLSDLESTQLGYKVSRSGLVEGYAQCVGDLSPSDCTA 202

Query: 131 CLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDL-TDSSHDDQVGKTVAIIVGVVA 189
           CLAE++ KLKNLCGSA AA+V+LAQCYARYW SGYYD  +D ++ D VGK++AIIVGV+A
Sbjct: 203 CLAESVGKLKNLCGSAVAAEVYLAQCYARYWGSGYYDFSSDPTNGDHVGKSIAIIVGVIA 262

Query: 190 GLAILIVFLSICRRAME 206
           G AIL+V LS+CR +M 
Sbjct: 263 GFAILVVLLSLCRNSMH 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU94|CRR12_ARATH Cysteine-rich repeat secretory protein 12 OS=Arabidopsis thaliana GN=CRRSP12 PE=2 SV=2

 Score =  174 bits (442), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/216 (42%), Positives = 137/216 (63%), Gaps = 12/216 (5%)

Query: 3   NGTSTPPEATVYGLYQCRGDLKTT--DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           NG S    ++VYGLYQCRGDL +   DC+RC+  AV+++  +C    G +LQLEGC+V+Y
Sbjct: 69  NGIS-GDSSSVYGLYQCRGDLSSGSGDCARCVARAVSRLGSLCAMASGGALQLEGCFVKY 127

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADL--QTAVSFKVSSSGFVEGFAQ 118
           ++  FLG  D ++  ++C   V  + +   RRD V+  L   +  S++V  SG ++G AQ
Sbjct: 128 DNTTFLGVEDKTVVVRRCGPPVGYNSDEMTRRDSVVGSLAASSGGSYRVGVSGELQGVAQ 187

Query: 119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYD-------LTDS 171
           C GDL+  +C  CL EAI +L+  CG A   DV+LA+CYARY A G +          ++
Sbjct: 188 CTGDLSATECQDCLMEAIGRLRTDCGGAAWGDVYLAKCYARYSARGGHSRANGYGGNRNN 247

Query: 172 SHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 207
           + DD++ KT+AIIVG++AG+ +L+VFLS   ++ ER
Sbjct: 248 NDDDEIEKTLAIIVGLIAGVTLLVVFLSFMAKSCER 283

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPN8|CRR60_ARATH Cysteine-rich repeat secretory protein 60 OS=Arabidopsis thaliana GN=CRRSP60 PE=1 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 116/182 (63%), Gaps = 4/182 (2%)

Query: 12  TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDT 71
           T  GL+QCRGDL   DC+ C+  AV+Q+  +CP+T G +LQL GCY++Y++I FLG+ D 
Sbjct: 86  TARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKYDNISFLGQEDK 145

Query: 72  SIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS-FKVSSSGFVEGFAQCLGDLTPADCTT 130
           ++  KKC  S   + +   RRD VL +L      F+   SG V+G  QC+GDLT ++C  
Sbjct: 146 TVVLKKCGSSEGYNTDGISRRDAVLTELVNGGGYFRAGGSGDVQGMGQCVGDLTVSECQD 205

Query: 131 CLAEAIAKLKNLCGSAPAADVFLAQCYARYWASG--YYDLTDSSHDDQVG-KTVAIIVGV 187
           CL  AI +LKN CG+A   D+FLA+CYARY   G  +Y  + +   +  G KT AII+G+
Sbjct: 206 CLGTAIGRLKNDCGTAVFGDMFLAKCYARYSTDGAQHYAKSHNYKTNYGGEKTFAIIIGL 265

Query: 188 VA 189
           +A
Sbjct: 266 LA 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUJ2|CRR2_ARATH Cysteine-rich repeat secretory protein 2 OS=Arabidopsis thaliana GN=CRRSP2 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 18/217 (8%)

Query: 9   PEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGK 68
           P  TVYG+YQCRGDL  T CS C+ SAV Q+  +C  +Y   LQ+E C +RY++  FLG 
Sbjct: 79  PTVTVYGIYQCRGDLDPTACSTCVSSAVAQVGALCSNSYSGFLQMENCLIRYDNKSFLGV 138

Query: 69  LDTSIWYKKCSKSVN-NDVEFFKRRDDVLADLQTA-VSFKVSSSGFVEGFAQCLGDLTPA 126
            D ++   KC + +  ND +   +  DV+  L T   S++   +G V+G AQC GDL+ +
Sbjct: 139 QDKTLILNKCGQPMEFNDQDALTKASDVIGSLGTGDGSYRTGGNGNVQGVAQCSGDLSTS 198

Query: 127 DCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY------------DLTDSSHD 174
            C  CL++AI +LK+ CG A    V+L++CYAR+   G +                +  D
Sbjct: 199 QCQDCLSDAIGRLKSDCGMAQGGYVYLSKCYARFSVGGSHARQTPGPNFGHEGEKGNKDD 258

Query: 175 DQVGKTVAIIVGVVAGLAILIVFLSI----CRRAMER 207
           + VGKT+AII+G+V  + +L+VFL+     CR+  + 
Sbjct: 259 NGVGKTLAIIIGIVTLIILLVVFLAFVGKCCRKLQDE 295

Arabidopsis thaliana (taxid: 3702)

>sp|O22784|CRR11_ARATH Cysteine-rich repeat secretory protein 11 OS=Arabidopsis thaliana GN=CRRSP11 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 98/215 (45%), Gaps = 25/215 (11%)

Query: 15  GLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIW 74
           GL+QCRGDL   DC  C+         +C  T  A +QL GCY+ YE   F       + 
Sbjct: 88  GLFQCRGDLSNNDCYNCVSRLPVLSGKLCGKTIAARVQLSGCYLLYEISGFAQISGMELL 147

Query: 75  YKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGF-------VEGFAQCLGDLTPAD 127
           +K C K+      F +RRD     +Q  V   V   GF       V    QC GD+  +D
Sbjct: 148 FKTCGKNNVAGTGFEQRRDTAFGVMQNGV---VQGHGFYATTYESVYVLGQCEGDIGDSD 204

Query: 128 CTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY--WASG-------------YYDLTDSS 172
           C+ C+  A+ + +  CGS+ +  ++L +C+  Y  + +G                 + SS
Sbjct: 205 CSGCIKNALQRAQVECGSSISGQIYLHKCFVGYSFYPNGVPKRSSPYPSSGSSGSSSSSS 264

Query: 173 HDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 207
                GKTVAIIVG  AG+  L++ L   +  M++
Sbjct: 265 SSGTTGKTVAIIVGGTAGVGFLVICLLFVKNLMKK 299

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NM73|CRR3_ARATH Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 96/219 (43%), Gaps = 30/219 (13%)

Query: 16  LYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTSIWY 75
           L+QCRGDL   DC  C+         +C  T  + +QL GCY+ YE   F       + +
Sbjct: 87  LFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVSGFSQISGMEMLF 146

Query: 76  KKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGF-------VEGFAQCLGDLTPADC 128
           K C K+      F +RRD     +Q  V   VS  GF       V    QC GD+   DC
Sbjct: 147 KTCGKNNIAGTGFEERRDTAFGVMQNGV---VSGHGFYATTYESVYVLGQCEGDVGDTDC 203

Query: 129 TTCLAEAIAKLKNLCGSAPAADVFLAQCYA--RYWASG------------------YYDL 168
           + C+  A+ K +  CGS+ +  ++L +C+    Y+ +G                    + 
Sbjct: 204 SGCVKNALEKAQVECGSSISGQIYLHKCFIAYSYYPNGVPRRSSSSSSSSSSSSSGSSNS 263

Query: 169 TDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 207
             S+     GKTVAIIVG  AG+  L++ L   +  M +
Sbjct: 264 DPSTSTGATGKTVAIIVGGAAGVGFLVICLLFAKNLMRK 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXV7|CRR56_ARATH Cysteine-rich repeat secretory protein 56 OS=Arabidopsis thaliana GN=CRRSP56 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 97/226 (42%), Gaps = 23/226 (10%)

Query: 5   TSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCP------YTYGASLQLEGCYV 58
           + T     V G++QCRGDL+   C  C+      +S +C           A + L GCY+
Sbjct: 70  SGTDNTTAVIGVFQCRGDLQNAQCYDCVSKIPKLVSKLCGGGRDDGNVVAARVHLAGCYI 129

Query: 59  RYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS------------FK 106
           RYE   F     T + ++ C K  +ND  F  +R+      +  V             F 
Sbjct: 130 RYESSGFRQTSGTEMLFRVCGKKDSNDPGFVGKRETAFGMAENGVKTGSSGGGGGGGGFY 189

Query: 107 VSSSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYA--RYWASG 164
                 V    QC G L  +DC  C+ +   K K+ CG + +  V+L +C+    Y++ G
Sbjct: 190 AGQYESVYVLGQCEGSLGNSDCGECVKDGFEKAKSECGESNSGQVYLQKCFVSYSYYSHG 249

Query: 165 YYD---LTDSSHDDQVGKTVAIIVGVVAGLAILIVFLSICRRAMER 207
             +   L+         +T+A+ VG V  L  +IV L + R AM++
Sbjct: 250 VPNIEPLSGGEKRQHTERTIALAVGGVFVLGFVIVCLLVLRSAMKK 295

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV60|CRR55_ARATH Cysteine-rich repeat secretory protein 55 OS=Arabidopsis thaliana GN=CRRSP55 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 15/186 (8%)

Query: 13  VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTS 72
           VYGL QCRGD+  TDCS CI+ A  +I  VC     + +  + C++RY   +F+GKLDT 
Sbjct: 74  VYGLAQCRGDISNTDCSTCIQDAAKKIREVCQNQSDSRILYDFCFLRYSQENFIGKLDTG 133

Query: 73  ---IWYKKCS------KSVNNDVE--FFK-RRDDVLADLQTAVSFKVSSSGFV--EGFAQ 118
              I++   +      K  +N++   F K R + VL   +     K   + FV   G  Q
Sbjct: 134 AGLIYFNVANVTEIDPKKFDNELGALFDKIRSEAVLPKNKGLGKGKTKLTPFVTLNGLVQ 193

Query: 119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY-WASGYYDLTDSSHDDQV 177
           C  DL+  DC  C A A+      C +     V  + CY RY +   Y+ L  +     V
Sbjct: 194 CTRDLSELDCAQCFATAVGSFMTTCHNKKGCRVLYSSCYVRYEFYPFYFPLDPAKTGPSV 253

Query: 178 GKTVAI 183
           G+  ++
Sbjct: 254 GRISSV 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH41|CRR7_ARATH Putative cysteine-rich repeat secretory protein 7 OS=Arabidopsis thaliana GN=CRRSP7 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 12  TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDT 71
           TVYG++ CRGD+ TT CS C+++A  +I+  C     A +  + C VRY ++ F  + ++
Sbjct: 75  TVYGMFLCRGDINTTSCSDCVQTAAIEIATNCTLNKRAFIYYDECMVRYSNVSFFSEFES 134

Query: 72  -SIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVE---------------G 115
             +  +   +S  N   F +   + L  L   VS       FVE                
Sbjct: 135 KPVIVRYSLRSAPNSNRFNQTLSNKLDQLIPNVSPSTLIPYFVEDQERVTQLEGSYDLVS 194

Query: 116 FAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
             QC  DL P++CT CL  A A +   CG   +A +F  +C  RY
Sbjct: 195 MIQCSPDLDPSNCTICLRFAYATVSTCCGVPSSALIFTPKCILRY 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAC7|CRR4_ARATH Cysteine-rich repeat secretory protein 4 OS=Arabidopsis thaliana GN=CRRSP4 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 2   GNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYE 61
            N T+     TV G++ CRGD+  T CS C+++A  +IS  C Y   A +  E C VRY 
Sbjct: 74  SNATAGISPDTVRGMFLCRGDISETSCSDCVQTATLEISRNCTYQKEAFIFYEECMVRYS 133

Query: 62  HIDFLGKLDTSIWYKKCSKSVNNDVEFFK-----RRDDVLAD-------------LQTAV 103
              F   +D   +  + S S   +++ F      + D+++ +             ++   
Sbjct: 134 DSSFFSLVDERPYIIRYSLSYAPNLDRFPQTLSDKMDELIINATSSPSLSSTPYFVEDQE 193

Query: 104 SFKVSSSGF-VEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWA 162
             K     F ++  AQC  DL P +CTTCL  A+ ++   C  +  A +F  +C  RY A
Sbjct: 194 RVKQFEGSFDIDSMAQCSPDLDPRNCTTCLKLAVQEMLECCNQSRWAQIFTPKCLLRYEA 253

Query: 163 SG 164
           + 
Sbjct: 254 TA 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
255541224	290	kinase, putative [Ricinus communis] gi|2	0.990	0.706	0.791	9e-94
296089184	396	unnamed protein product [Vitis vinifera]	1.0	0.522	0.779	1e-92
359489437	290	PREDICTED: cysteine-rich repeat secretor	0.990	0.706	0.787	4e-92
224127338	298	predicted protein [Populus trichocarpa]	1.0	0.694	0.793	4e-90
356498234	289	PREDICTED: cysteine-rich repeat secretor	0.985	0.705	0.746	6e-86
356495157	294	PREDICTED: cysteine-rich repeat secretor	0.990	0.697	0.703	7e-86
356537647	289	PREDICTED: cysteine-rich repeat secretor	0.985	0.705	0.726	3e-83
449498931	299	PREDICTED: LOW QUALITY PROTEIN: cysteine	0.990	0.685	0.655	2e-77
449454534	300	PREDICTED: cysteine-rich repeat secretor	0.990	0.683	0.655	2e-77
356506388	297	PREDICTED: LOW QUALITY PROTEIN: cysteine	0.966	0.673	0.666	1e-76

>gi|255541224|ref|XP_002511676.1| kinase, putative [Ricinus communis] gi|223548856|gb|EEF50345.1| kinase, putative [Ricinus communis]

 Score =  348 bits (893), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 163/206 (79%), Positives = 185/206 (89%), Gaps = 1/206 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNGTS P EA+V+GLYQCRGDLKT DCSRCI+S VNQI LVCPY+YGA+LQLEGCY+RY
Sbjct: 84  IGNGTSAPAEASVFGLYQCRGDLKTIDCSRCIQSTVNQIGLVCPYSYGAALQLEGCYLRY 143

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH DFLG+LDTS+ YKKCSKSVNNDVEFF+RRDDVLADLQT + FKVSSSG VEG+AQCL
Sbjct: 144 EHNDFLGQLDTSLRYKKCSKSVNNDVEFFRRRDDVLADLQTGIGFKVSSSGLVEGYAQCL 203

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLT-DSSHDDQVGK 179
           GDL  ADC++CLA  +  LKNLCGSA AADVFL QCYARYWASGYYD++ DSS++DQVGK
Sbjct: 204 GDLNSADCSSCLANVVGMLKNLCGSASAADVFLGQCYARYWASGYYDISVDSSNEDQVGK 263

Query: 180 TVAIIVGVVAGLAILIVFLSICRRAM 205
           TVAIIVGVVAGLA+LIV LS CR++M
Sbjct: 264 TVAIIVGVVAGLAVLIVLLSFCRKSM 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089184|emb|CBI38887.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/209 (77%), Positives = 185/209 (88%), Gaps = 2/209 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           MGNG+ST  E  VYGLYQCRGDLKTTDCSRCIESAV+QISLVCPY+YGA LQLEGCYVRY
Sbjct: 155 MGNGSSTSTEGAVYGLYQCRGDLKTTDCSRCIESAVSQISLVCPYSYGAGLQLEGCYVRY 214

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLG+LDTS+ YKKCSKSV+NDVEF++RRDDVLADLQTA  F+VSSSG V+GFAQCL
Sbjct: 215 EHVDFLGRLDTSLMYKKCSKSVSNDVEFYRRRDDVLADLQTATGFRVSSSGLVQGFAQCL 274

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDL--TDSSHDDQVG 178
           GDL+  DC+ CLAEA+ KLKNLCGSA A+DVFL+QCYARYWASGYYD     SS+ DQVG
Sbjct: 275 GDLSSGDCSACLAEAVGKLKNLCGSASASDVFLSQCYARYWASGYYDFSSDSSSNQDQVG 334

Query: 179 KTVAIIVGVVAGLAILIVFLSICRRAMER 207
           KTVAIIVGV+AGLAI++V LS  RRA+ +
Sbjct: 335 KTVAIIVGVLAGLAIVVVLLSFLRRALGK 363

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489437|ref|XP_002274389.2| PREDICTED: cysteine-rich repeat secretory protein 15-like [Vitis vinifera]

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 163/207 (78%), Positives = 184/207 (88%), Gaps = 2/207 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           MGNG+ST  E  VYGLYQCRGDLKTTDCSRCIESAV+QISLVCPY+YGA LQLEGCYVRY
Sbjct: 83  MGNGSSTSTEGAVYGLYQCRGDLKTTDCSRCIESAVSQISLVCPYSYGAGLQLEGCYVRY 142

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLG+LDTS+ YKKCSKSV+NDVEF++RRDDVLADLQTA  F+VSSSG V+GFAQCL
Sbjct: 143 EHVDFLGRLDTSLMYKKCSKSVSNDVEFYRRRDDVLADLQTATGFRVSSSGLVQGFAQCL 202

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDL--TDSSHDDQVG 178
           GDL+  DC+ CLAEA+ KLKNLCGSA A+DVFL+QCYARYWASGYYD     SS+ DQVG
Sbjct: 203 GDLSSGDCSACLAEAVGKLKNLCGSASASDVFLSQCYARYWASGYYDFSSDSSSNQDQVG 262

Query: 179 KTVAIIVGVVAGLAILIVFLSICRRAM 205
           KTVAIIVGV+AGLAI++V LS  RRA+
Sbjct: 263 KTVAIIVGVLAGLAIVVVLLSFLRRAL 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127338|ref|XP_002320049.1| predicted protein [Populus trichocarpa] gi|222860822|gb|EEE98364.1| predicted protein [Populus trichocarpa]

 Score =  336 bits (861), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/208 (79%), Positives = 187/208 (89%), Gaps = 1/208 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+STPPE   YGLYQCRGDL+T DCSRCIESAVNQISLVCPY+YGA+LQLEGCYVRY
Sbjct: 82  IGNGSSTPPEGICYGLYQCRGDLRTIDCSRCIESAVNQISLVCPYSYGAALQLEGCYVRY 141

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLG+LDTS+ +KKCS+SVNNDVEFFKRRDDVLADL TA+ FKVSSSG VEG+AQCL
Sbjct: 142 EHVDFLGRLDTSLRFKKCSRSVNNDVEFFKRRDDVLADLPTAMGFKVSSSGSVEGYAQCL 201

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY-DLTDSSHDDQVGK 179
           GDL+ +DC+ CL  A+A+LKNLCGSA AADV+L QCYARYWASGYY   +DSS +D VGK
Sbjct: 202 GDLSSSDCSACLVAAVAQLKNLCGSAAAADVYLGQCYARYWASGYYDRSSDSSSEDDVGK 261

Query: 180 TVAIIVGVVAGLAILIVFLSICRRAMER 207
           TVAIIVGV+AGL+ILIVFLS CRRAM R
Sbjct: 262 TVAIIVGVLAGLSILIVFLSFCRRAMGR 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498234|ref|XP_003517958.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  322 bits (825), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 153/205 (74%), Positives = 177/205 (86%), Gaps = 1/205 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+STP E  VYGLYQCRGDL   DCS+C+   VNQI LVCPY  GASLQLEGC VRY
Sbjct: 83  IGNGSSTPQEGNVYGLYQCRGDLHPVDCSKCVGRLVNQIGLVCPYALGASLQLEGCLVRY 142

Query: 61  EHI-DFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQC 119
           EH  DFLGKLDTS+ YKKCSK+V +DVEFF+RRDDVLADLQTA  F+VSSSG VEGFAQC
Sbjct: 143 EHAGDFLGKLDTSLRYKKCSKAVTSDVEFFRRRDDVLADLQTANGFRVSSSGLVEGFAQC 202

Query: 120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGK 179
           LGDL+ +DC++CLA+A+ KLK+LCGSA  ADVFL QCYARYWASGYYD +DSS++DQVGK
Sbjct: 203 LGDLSVSDCSSCLADAVGKLKSLCGSAATADVFLGQCYARYWASGYYDESDSSNNDQVGK 262

Query: 180 TVAIIVGVVAGLAILIVFLSICRRA 204
           +VAIIVGV AGLA+L+V LSIC++A
Sbjct: 263 SVAIIVGVFAGLAVLVVLLSICKKA 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495157|ref|XP_003516447.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  322 bits (824), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 180/206 (87%), Gaps = 1/206 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+S+PPE ++YGLYQCR DL+  +CS+C++S V+QI L+CP  +GASLQLEGCY+RY
Sbjct: 83  IGNGSSSPPEGSIYGLYQCRADLRPNECSKCVKSCVDQIGLICPLAFGASLQLEGCYIRY 142

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLGK DTS+WYK+CSK+V ND EFF+RRDDVLADLQ A  F VS+SGFVEGFA CL
Sbjct: 143 EHVDFLGKPDTSLWYKRCSKAVANDAEFFRRRDDVLADLQVANGFGVSTSGFVEGFALCL 202

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSH-DDQVGK 179
           GDL+ ADC++CL EA+ KL+++CGSA +ADVFLAQCYARYW +GYYD  +SS  DDQVGK
Sbjct: 203 GDLSMADCSSCLQEAVGKLRSICGSAASADVFLAQCYARYWEAGYYDEAESSKDDDQVGK 262

Query: 180 TVAIIVGVVAGLAILIVFLSICRRAM 205
           +VAIIVG++AGLAIL+V LSIC+RAM
Sbjct: 263 SVAIIVGILAGLAILVVILSICKRAM 288

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537647|ref|XP_003537337.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/205 (72%), Positives = 174/205 (84%), Gaps = 1/205 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+ TP E +VYGLYQCRGDL   DCS+C+   VNQI LVCPY  GASLQLEGC VRY
Sbjct: 83  VGNGSLTPQEGSVYGLYQCRGDLHPIDCSKCVGRLVNQIGLVCPYALGASLQLEGCLVRY 142

Query: 61  EHI-DFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQC 119
           EH  DFLGKLDTS+ YKKCSK+  +DVEFF RRDDVLADLQTA  F+VSSSG VEGFAQC
Sbjct: 143 EHAGDFLGKLDTSLRYKKCSKAATSDVEFFHRRDDVLADLQTANGFRVSSSGIVEGFAQC 202

Query: 120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQVGK 179
           LGDL+ +DC++C+A+A+ KLK+LCGSA AAD+FL QCYARYWASGYY  +DSS++DQVGK
Sbjct: 203 LGDLSVSDCSSCIADAVGKLKSLCGSAAAADLFLGQCYARYWASGYYHESDSSNNDQVGK 262

Query: 180 TVAIIVGVVAGLAILIVFLSICRRA 204
           +VAIIVGV AGLA+L+V LSIC+ A
Sbjct: 263 SVAIIVGVFAGLAVLVVILSICKTA 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449498931|ref|XP_004160674.1| PREDICTED: LOW QUALITY PROTEIN: cysteine-rich repeat secretory protein 15-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 170/212 (80%), Gaps = 7/212 (3%)

Query: 1   MGNGTST--PPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYV 58
           +GN +S     E  ++GLYQCRGDL T DCS+CI + V+QI L CP++YGA+LQ EGCYV
Sbjct: 87  IGNDSSNTIQLEGAIFGLYQCRGDLATIDCSKCIRNGVSQIHLACPFSYGATLQFEGCYV 146

Query: 59  RYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAV----SFKVSSSGFVE 114
           RYEH DFLGKLDTS+ +KKCS S +ND+EFF+RRDDVLAD+Q        F+VSSSG V+
Sbjct: 147 RYEHFDFLGKLDTSVKFKKCSASSSNDIEFFRRRDDVLADMQAGAGAGNGFRVSSSGLVQ 206

Query: 115 GFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY-DLTDSSH 173
           GFAQCLGDL+  DC++CLA+ + KLK+LCGSA AADVF+ QCYARYWASG+Y + + S  
Sbjct: 207 GFAQCLGDLSSQDCSSCLADCVGKLKSLCGSAAAADVFMGQCYARYWASGFYPNSSVSPS 266

Query: 174 DDQVGKTVAIIVGVVAGLAILIVFLSICRRAM 205
           DDQ GKTVAII+GVVA LAIL+V LS+CRRAM
Sbjct: 267 DDQAGKTVAIIIGVVAALAILVVLLSVCRRAM 298

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454534|ref|XP_004145009.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Cucumis sativus] gi|449470850|ref|XP_004153128.1| PREDICTED: cysteine-rich repeat secretory protein 15-like [Cucumis sativus]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 170/212 (80%), Gaps = 7/212 (3%)

Query: 1   MGNGTST--PPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYV 58
           +GN +S     E  ++GLYQCRGDL T DCS+CI + V+QI L CP++YGA+LQ EGCYV
Sbjct: 88  IGNDSSNTIQLEGAIFGLYQCRGDLATIDCSKCIRNGVSQIHLACPFSYGATLQFEGCYV 147

Query: 59  RYEHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAV----SFKVSSSGFVE 114
           RYEH DFLGKLDTS+ +KKCS S +ND+EFF+RRDDVLAD+Q        F+VSSSG V+
Sbjct: 148 RYEHFDFLGKLDTSVKFKKCSASSSNDIEFFRRRDDVLADMQAGAGAGNGFRVSSSGLVQ 207

Query: 115 GFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY-DLTDSSH 173
           GFAQCLGDL+  DC++CLA+ + KLK+LCGSA AADVF+ QCYARYWASG+Y + + S  
Sbjct: 208 GFAQCLGDLSSQDCSSCLADCVGKLKSLCGSAAAADVFMGQCYARYWASGFYPNSSVSPS 267

Query: 174 DDQVGKTVAIIVGVVAGLAILIVFLSICRRAM 205
           DDQ GKTVAII+GVVA LAIL+V LS+CRRAM
Sbjct: 268 DDQAGKTVAIIIGVVAALAILVVLLSVCRRAM 299

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506388|ref|XP_003521965.1| PREDICTED: LOW QUALITY PROTEIN: cysteine-rich repeat secretory protein 15-like [Glycine max]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 169/201 (84%), Gaps = 1/201 (0%)

Query: 1   MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
           +GNG+S+PPE  +YGLYQCR DL+  +CS+C+++ V+QI LVC    GASLQLEGCY+RY
Sbjct: 91  IGNGSSSPPEGFIYGLYQCRADLRPNNCSKCVKNCVDQIGLVCLLALGASLQLEGCYIRY 150

Query: 61  EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGFVEGFAQCL 120
           EH+DFLGK DT++WYK+CSK+V N+ EFF+RRDDVLADLQ A  F VS+SGFVEGFA CL
Sbjct: 151 EHVDFLGKPDTNLWYKRCSKAVANNAEFFQRRDDVLADLQVANGFGVSTSGFVEGFALCL 210

Query: 121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSH-DDQVGK 179
            DL+ ADC +CL EA+ KL+++CGSA +AD+FLAQCYA YW +GYYD  +SS  DDQVGK
Sbjct: 211 MDLSVADCPSCLQEAVEKLRSICGSAASADLFLAQCYAWYWXAGYYDEAESSEDDDQVGK 270

Query: 180 TVAIIVGVVAGLAILIVFLSI 200
           +VAIIVGV+AGLAIL+V L++
Sbjct: 271 SVAIIVGVLAGLAILVVLLNL 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2101811	279	PDLP8 "AT3G60720" [Arabidopsis	0.990	0.734	0.598	1.1e-66
TAIR|locus:2151709	298	PDLP7 "plasmodesmata-located p	0.772	0.536	0.460	2.4e-37
TAIR|locus:2065450	288	PDLP6 "AT2G01660" [Arabidopsis	0.985	0.708	0.384	5.7e-36
TAIR|locus:2033614	299	HWI1 "HOPW1-1-INDUCED GENE1" [	0.772	0.535	0.423	4.1e-33
TAIR|locus:2051089	304	PDLP3 "AT2G33330" [Arabidopsis	0.753	0.513	0.312	1.5e-19
TAIR|locus:2166091	263	AT5G48540 "AT5G48540" [Arabido	0.806	0.634	0.324	2.5e-19
TAIR|locus:2018314	307	PDLP2 "AT1G04520" [Arabidopsis	0.743	0.501	0.335	6.5e-19
TAIR|locus:2031311	284	AT1G63570 "AT1G63570" [Arabido	0.719	0.524	0.296	4.7e-16
TAIR|locus:2127323	642	CRK27 "cysteine-rich RLK (RECE	0.763	0.246	0.307	1.3e-13
TAIR|locus:2095662	252	AT3G22060 "AT3G22060" [Arabido	0.758	0.623	0.282	2.7e-13

TAIR|locus:2101811 PDLP8 "AT3G60720" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 125/209 (59%), Positives = 164/209 (78%)

Query:     1 MGNGTSTPPEAT-VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVR 59
             +GN +S+   ++ V+GLYQCR DL+++DCS+CI+++V+QI+L+CPY+YGASLQLEGC++R
Sbjct:    70 VGNDSSSSSSSSAVFGLYQCRDDLRSSDCSKCIQTSVDQITLICPYSYGASLQLEGCFLR 129

Query:    60 YEHIDFLGKLDTSIWYKKCS-KSVNNDVEFFKRRDDVLADLQ-TAVSFKVSSSGFVEGFA 117
             YE  DFLGK DTS+ YKKCS KSV ND +FFKRRDDVL+DL+ T + +KVS SG VEG+A
Sbjct:   130 YETNDFLGKPDTSLRYKKCSSKSVENDYDFFKRRDDVLSDLESTQLGYKVSRSGLVEGYA 189

Query:   118 QCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLT-DSSHDDQ 176
             QC+GDL+P+DCT CLAE++ KLKNLCGSA AA+V+LAQCYARYW SGYYD + D ++ D 
Sbjct:   190 QCVGDLSPSDCTACLAESVGKLKNLCGSAVAAEVYLAQCYARYWGSGYYDFSSDPTNGDH 249

Query:   177 VGKTXXXXXXXXXXXXXXXXFLSICRRAM 205
             VGK+                 LS+CR +M
Sbjct:   250 VGKSIAIIVGVIAGFAILVVLLSLCRNSM 278

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151709 PDLP7 "plasmodesmata-located protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 76/165 (46%), Positives = 105/165 (63%)

Query:     1 MGNGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
             MG+ +S     T  GL+QCRGDL   DC+ C+  AV+Q+  +CP+T G +LQL GCY++Y
Sbjct:    79 MGSSSSD----TARGLFQCRGDLSMPDCATCVARAVSQVGPLCPFTCGGALQLAGCYIKY 134

Query:    61 EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVS-FKVSSSGFVEGFAQC 119
             ++I FLG+ D ++  KKC  S   + +   RRD VL +L      F+   SG V+G  QC
Sbjct:   135 DNISFLGQEDKTVVLKKCGSSEGYNTDGISRRDAVLTELVNGGGYFRAGGSGDVQGMGQC 194

Query:   120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASG 164
             +GDLT ++C  CL  AI +LKN CG+A   D+FLA+CYARY   G
Sbjct:   195 VGDLTVSECQDCLGTAIGRLKNDCGTAVFGDMFLAKCYARYSTDG 239

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2065450 PDLP6 "AT2G01660" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 83/216 (38%), Positives = 123/216 (56%)

Query:     3 NGTSTPPEATVYGLYQCRGDLKTT--DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRY 60
             NG S    ++VYGLYQCRGDL +   DC+RC+  AV+++  +C    G +LQLEGC+V+Y
Sbjct:    69 NGISGD-SSSVYGLYQCRGDLSSGSGDCARCVARAVSRLGSLCAMASGGALQLEGCFVKY 127

Query:    61 EHIDFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAV--SFKVSSSGFVEGFAQ 118
             ++  FLG  D ++  ++C   V  + +   RRD V+  L  +   S++V  SG ++G AQ
Sbjct:   128 DNTTFLGVEDKTVVVRRCGPPVGYNSDEMTRRDSVVGSLAASSGGSYRVGVSGELQGVAQ 187

Query:   119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWA-------SGYYDLTDS 171
             C GDL+  +C  CL EAI +L+  CG A   DV+LA+CYARY A       +GY    ++
Sbjct:   188 CTGDLSATECQDCLMEAIGRLRTDCGGAAWGDVYLAKCYARYSARGGHSRANGYGGNRNN 247

Query:   172 SHDDQVGKTXXXXXXXXXXXXXXXXFLSICRRAMER 207
             + DD++ KT                FLS   ++ ER
Sbjct:   248 NDDDEIEKTLAIIVGLIAGVTLLVVFLSFMAKSCER 283

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2033614 HWI1 "HOPW1-1-INDUCED GENE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 69/163 (42%), Positives = 99/163 (60%)

Query:     5 TSTP-PEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHI 63
             T  P P  TVYG+YQCRGDL  T CS C+ SAV Q+  +C  +Y   LQ+E C +RY++ 
Sbjct:    74 TGKPEPTVTVYGIYQCRGDLDPTACSTCVSSAVAQVGALCSNSYSGFLQMENCLIRYDNK 133

Query:    64 DFLGKLDTSIWYKKCSKSVN-NDVEFFKRRDDVLADLQTAV-SFKVSSSGFVEGFAQCLG 121
              FLG  D ++   KC + +  ND +   +  DV+  L T   S++   +G V+G AQC G
Sbjct:   134 SFLGVQDKTLILNKCGQPMEFNDQDALTKASDVIGSLGTGDGSYRTGGNGNVQGVAQCSG 193

Query:   122 DLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASG 164
             DL+ + C  CL++AI +LK+ CG A    V+L++CYAR+   G
Sbjct:   194 DLSTSQCQDCLSDAIGRLKSDCGMAQGGYVYLSKCYARFSVGG 236

GO:0005576 "extracellular region" evidence=ISM

GO:0051707 "response to other organism" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2051089 PDLP3 "AT2G33330" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 50/160 (31%), Positives = 77/160 (48%)

Query:     5 TSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHID 64
             T T  + +V GL+QCRGDL   DC  C+         +C  T  A +QL GCY+ YE   
Sbjct:    78 TGTTSQTSVTGLFQCRGDLSNNDCYNCVSRLPVLSGKLCGKTIAARVQLSGCYLLYEISG 137

Query:    65 FLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAV----SFKVSSSGFVEGFAQCL 120
             F       + +K C K+      F +RRD     +Q  V     F  ++   V    QC 
Sbjct:   138 FAQISGMELLFKTCGKNNVAGTGFEQRRDTAFGVMQNGVVQGHGFYATTYESVYVLGQCE 197

Query:   121 GDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
             GD+  +DC+ C+  A+ + +  CGS+ +  ++L +C+  Y
Sbjct:   198 GDIGDSDCSGCIKNALQRAQVECGSSISGQIYLHKCFVGY 237

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IGI

GO:0046739 "spread of virus in multicellular host" evidence=IGI

TAIR|locus:2166091 AT5G48540 "AT5G48540" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 59/182 (32%), Positives = 86/182 (47%)

Query:    13 VYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDTS 72
             VYGL QCRGD+  TDCS CI+ A  +I  VC     + +  + C++RY   +F+GKLDT 
Sbjct:    74 VYGLAQCRGDISNTDCSTCIQDAAKKIREVCQNQSDSRILYDFCFLRYSQENFIGKLDTG 133

Query:    73 ---IWYKKCS------KSVNNDVE--FFKRRDD-VLADLQTAVSFKVSSSGFV--EGFAQ 118
                I++   +      K  +N++   F K R + VL   +     K   + FV   G  Q
Sbjct:   134 AGLIYFNVANVTEIDPKKFDNELGALFDKIRSEAVLPKNKGLGKGKTKLTPFVTLNGLVQ 193

Query:   119 CLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY-WASGYYDLTDSSHDDQV 177
             C  DL+  DC  C A A+      C +     V  + CY RY +   Y+ L  +     V
Sbjct:   194 CTRDLSELDCAQCFATAVGSFMTTCHNKKGCRVLYSSCYVRYEFYPFYFPLDPAKTGPSV 253

Query:   178 GK 179
             G+
Sbjct:   254 GR 255

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2018314 PDLP2 "AT1G04520" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 57/170 (33%), Positives = 80/170 (47%)

Query:     4 GTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHI 63
             GTST    T+ GL+QCRGDL   DC  C+         +C  T  + +QL GCY+ YE  
Sbjct:    78 GTST---TTITGLFQCRGDLSNHDCYNCVSRLPVLSDKLCGKTIASRVQLSGCYLLYEVS 134

Query:    64 DFLGKLDTSIWYKKCSKSVNNDVEFFKRRDDVLADLQTAVSFKVSSSGF-------VEGF 116
              F       + +K C K+      F +RRD     +Q  V   VS  GF       V   
Sbjct:   135 GFSQISGMEMLFKTCGKNNIAGTGFEERRDTAFGVMQNGV---VSGHGFYATTYESVYVL 191

Query:   117 AQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYY 166
              QC GD+   DC+ C+  A+ K +  CGS+ +  ++L +C+  Y    YY
Sbjct:   192 GQCEGDVGDTDCSGCVKNALEKAQVECGSSISGQIYLHKCFIAY---SYY 238

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009506 "plasmodesma" evidence=IDA

GO:0010497 "plasmodesmata-mediated intercellular transport" evidence=IGI

GO:0046739 "spread of virus in multicellular host" evidence=IGI

TAIR|locus:2031311 AT1G63570 "AT1G63570" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 49/165 (29%), Positives = 81/165 (49%)

Query:    12 TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLDT 71
             TVYG++ CRGD+ TT CS C+++A  +I+  C     A +  + C VRY ++ F  + ++
Sbjct:    75 TVYGMFLCRGDINTTSCSDCVQTAAIEIATNCTLNKRAFIYYDECMVRYSNVSFFSEFES 134

Query:    72 S-IWYKKCSKSVNNDVEFFK----RRDDVLADLQ--TAVSFKVSSSGFV---EG------ 115
               +  +   +S  N   F +    + D ++ ++   T + + V     V   EG      
Sbjct:   135 KPVIVRYSLRSAPNSNRFNQTLSNKLDQLIPNVSPSTLIPYFVEDQERVTQLEGSYDLVS 194

Query:   116 FAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
               QC  DL P++CT CL  A A +   CG   +A +F  +C  RY
Sbjct:   195 MIQCSPDLDPSNCTICLRFAYATVSTCCGVPSSALIFTPKCILRY 239

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2127323 CRK27 "cysteine-rich RLK (RECEPTOR-like protein kinase) 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 52/169 (30%), Positives = 74/169 (43%)

Query:    19 CRGDLKTT-DCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDFLGKLD-TSIWYK 76
             CRGD+K   DC  CI +A  Q+   CP    A++ LE C  RY     LG+++     Y 
Sbjct:    83 CRGDVKPNQDCISCITTAAKQLVESCPNIIEANIWLEKCMFRYTSRIILGQMEPVPFSYT 142

Query:    77 KCSKSVNNDVEFFKRRDDVL----ADLQTA-----VSFKVSSSGFVEGFAQCLGDLTPAD 127
               + SV +   F K   D+L    A +  A     V F     G +   AQC  DL+ +D
Sbjct:   143 SSNVSVTDKEGFSKGLGDLLDSLGAKIDAANETKEVKFAAGVKGTIYALAQCTPDLSESD 202

Query:   128 CTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGYYDLTDSSHDDQ 176
             C  CLA+  A +   C            CY R+    ++DL+ +S   Q
Sbjct:   203 CRICLAQIFAGVPTCCDGKTGGWWTNPSCYFRFEVYPFFDLSVTSEQKQ 251

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 48/170 (28%), Positives = 75/170 (44%)

Query:     3 NGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEH 62
             + T   P   V GL  CRGD  ++DC  C+E+A+ ++   CP      +  + C V+Y  
Sbjct:    75 SSTGNTPN-NVNGLALCRGDASSSDCRSCLETAIPELRQRCPNNKAGIVWYDNCLVKYSS 133

Query:    63 IDFLGKLD-TSIWYKKCSKSVNNDVEFFKRRDDVLADLQ----TAVSFKVSSSGF----- 112
              +F GK+D  + +Y    K+V++   F  +   +L +L     T  + K+ ++G      
Sbjct:   134 TNFFGKIDFENRFYLYNVKNVSDPSTFNSQTKALLTELTKKATTRDNQKLFATGEKNIGK 193

Query:   113 --VEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARY 160
               + G  QC  DL    C  CL   I +L N C       V    C  RY
Sbjct:   194 NKLYGLVQCTRDLKSITCKACLNGIIGELPNCCDGKEGGRVVGGSCNFRY 243

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NKQ9	CRR15_ARATH	No assigned EC number	0.6802	0.9371	0.6953	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026387001 SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (324 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam01657	106	pfam01657, Stress-antifung, Salt stress response/a	7e-18
pfam01657	106	pfam01657, Stress-antifung, Salt stress response/a	1e-15

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal

 Score = 75.2 bits (185), Expect = 7e-18
 Identities = 27/63 (42%), Positives = 37/63 (58%)

Query: 3   NGTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEH 62
            GTS     TVYGL QCRGDL  +DC  C+ +AV+++   CP   G  +  + C++RYE 
Sbjct: 44  AGTSGAAPDTVYGLAQCRGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYES 103

Query: 63  IDF 65
             F
Sbjct: 104 YPF 106

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 15/106 (14%)

Query: 75  YKKCSKSVNN-----DVEFFKRRDDVLADLQTAVS------FKVSSSGF----VEGFAQC 119
           +  CS + +      +  F    + +L+ L +  +      F   +SG     V G AQC
Sbjct: 1   FHLCSSNTSGNYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQC 60

Query: 120 LGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFLAQCYARYWASGY 165
            GDL+ +DC +CLA A+++L+  C +     ++   C+ RY +  +
Sbjct: 61  RGDLSASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PF01657	106	Stress-antifung: Salt stress response/antifungal;	99.88
PF01657	106	Stress-antifung: Salt stress response/antifungal;	99.74
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	95.96
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	94.72
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	93.9
PF14610	189	DUF4448: Protein of unknown function (DUF4448)	91.41
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	90.76
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	90.08
PF15102	146	TMEM154: TMEM154 protein family	89.22
PHA03265	402	envelope glycoprotein D; Provisional	85.4
PF15012	56	DUF4519: Domain of unknown function (DUF4519)	83.49
PF12669	58	P12: Virus attachment protein p12 family	83.05
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	82.47

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function

Probab=99.88  E-value=6.8e-23  Score=150.13  Aligned_cols=82  Identities=30%  Similarity=0.677  Sum_probs=65.4

Q ss_pred             CcHHHHHHHHHHHHHHHHhh------ccccc----CCcceEEEEeccCCCChhhHHHHHHHHHHHHHhhcCCCcccEEEc
Q 028556           84 NDVEFFKRRDDVLADLQTAV------SFKVS----SSGFVEGFAQCLGDLTPADCTTCLAEAIAKLKNLCGSAPAADVFL  153 (207)
Q Consensus        84 ~~~~~~~~~~~ll~~l~~~a------~f~~~----~~~~vYgLaQC~~DLs~~~C~~CL~~a~~~~~~~c~~~~gg~i~~  153 (207)
                      .+..|..++..+|..|...+      +|+++    +..+||||+||++||++.+|..||+.++.+++++|+.++||+|++
T Consensus        15 ~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~   94 (106)
T PF01657_consen   15 DNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWY   94 (106)
T ss_dssp             TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEEC
Confidence            34556677899998886543      46554    356999999999999999999999999999999999999999999


Q ss_pred             CceeEEEeccCC
Q 028556          154 AQCYARYWASGY  165 (207)
Q Consensus       154 ~~C~lRYe~~~F  165 (207)
                      ++|+||||+|+|
T Consensus        95 ~~C~lRY~~~~F  106 (106)
T PF01657_consen   95 DSCFLRYENYPF  106 (106)
T ss_dssp             SSEEEEEESS--
T ss_pred             CCEEEEEECCCC
Confidence            999999999998

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function

Probab=99.74  E-value=1.1e-18  Score=127.71  Aligned_cols=62  Identities=44%  Similarity=0.912  Sum_probs=51.0

Q ss_pred             CCCCCCCCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEEeeee
Q 028556            4 GTSTPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF   65 (207)
Q Consensus         4 ~~~~~~~~~vygl~qCr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f   65 (207)
                      |+.|.+.+++|||+||++|+++++|..||+.|..++++.|+..++++||++.|+|||++++|
T Consensus        45 ~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   45 GSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANISSCCPGSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             EE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred             eecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence            44567788999999999999999999999999999999999999999999999999999987

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=95.96  E-value=0.0021  Score=48.06  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             CCCcEEEEeeHHHHHHHHHHHHHHH-HHHhhcC
Q 028556          176 QVGKTVAIIVGVVAGLAILIVFLSI-CRRAMER  207 (207)
Q Consensus       176 ~~~~~~~iv~~~v~~~~~~~~~~~~-~~~~~~~  207 (207)
                      ..+.++.|++|++++++++++++.| +||++||
T Consensus        62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             cccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3456778999999998777766655 5666665

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=94.72  E-value=0.029  Score=33.47  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=11.4

Q ss_pred             EEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028556          182 AIIVGVVAGLAILIVFLSICRRAMER  207 (207)
Q Consensus       182 ~iv~~~v~~~~~~~~~~~~~~~~~~~  207 (207)
                      ++++|+++-+ ++++++.|+|||++|
T Consensus        16 ~VvVPV~vI~-~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen   16 GVVVPVGVII-IVLGAFLFFWYRRKK   40 (40)
T ss_pred             EEEechHHHH-HHHHHHhheEEeccC
Confidence            4455544422 333334444565554

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=93.90  E-value=0.042  Score=39.33  Aligned_cols=25  Identities=36%  Similarity=0.392  Sum_probs=15.9

Q ss_pred             CCCcEEEEeeHHHHHHHHHHHHHHH
Q 028556          176 QVGKTVAIIVGVVAGLAILIVFLSI  200 (207)
Q Consensus       176 ~~~~~~~iv~~~v~~~~~~~~~~~~  200 (207)
                      +++.|..|++++++.+..++.+++|
T Consensus        64 s~gaiagi~vg~~~~v~~lv~~l~w   88 (96)
T PTZ00382         64 STGAIAGISVAVVAVVGGLVGFLCW   88 (96)
T ss_pred             ccccEEEEEeehhhHHHHHHHHHhh
Confidence            4567888999877665444444443

>PF14610 DUF4448: Protein of unknown function (DUF4448)

Probab=91.41  E-value=0.14  Score=40.95  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             EEEEeeHHHHHHHHHHHHHHHHHHhhcC
Q 028556          180 TVAIIVGVVAGLAILIVFLSICRRAMER  207 (207)
Q Consensus       180 ~~~iv~~~v~~~~~~~~~~~~~~~~~~~  207 (207)
                      .++|++|+++++++++++..++|+|++|
T Consensus       159 ~laI~lPvvv~~~~~~~~~~~~~~R~~R  186 (189)
T PF14610_consen  159 ALAIALPVVVVVLALIMYGFFFWNRKKR  186 (189)
T ss_pred             eEEEEccHHHHHHHHHHHhhheeeccce
Confidence            7899999998776666666666666553

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=90.76  E-value=0.073  Score=35.01  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=0.4

Q ss_pred             cEEEEeeHHHHHHHHHHHHHHH-HHHhhcC
Q 028556          179 KTVAIIVGVVAGLAILIVFLSI-CRRAMER  207 (207)
Q Consensus       179 ~~~~iv~~~v~~~~~~~~~~~~-~~~~~~~  207 (207)
                      ...++|+|+|++++++++++.| +.|.+||
T Consensus        10 vlaavIaG~Vvgll~ailLIlf~iyR~rkk   39 (64)
T PF01034_consen   10 VLAAVIAGGVVGLLFAILLILFLIYRMRKK   39 (64)
T ss_dssp             ---------------------------S--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456666666665544443433 3444443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=90.08  E-value=0.25  Score=29.03  Aligned_cols=21  Identities=52%  Similarity=0.822  Sum_probs=14.5

Q ss_pred             cEEEEeeHHHHHHHHHHHHHH
Q 028556          179 KTVAIIVGVVAGLAILIVFLS  199 (207)
Q Consensus       179 ~~~~iv~~~v~~~~~~~~~~~  199 (207)
                      .+++|+++++++++++++...
T Consensus         4 s~IaIIv~V~vg~~iiii~~~   24 (38)
T PF02439_consen    4 STIAIIVAVVVGMAIIIICMF   24 (38)
T ss_pred             chhhHHHHHHHHHHHHHHHHH
Confidence            467888888887766655443

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF15102 TMEM154: TMEM154 protein family

Probab=89.22  E-value=0.24  Score=38.04  Aligned_cols=10  Identities=20%  Similarity=0.428  Sum_probs=6.7

Q ss_pred             EEEEeeHHHH
Q 028556          180 TVAIIVGVVA  189 (207)
Q Consensus       180 ~~~iv~~~v~  189 (207)
                      ++.|++|.|+
T Consensus        58 iLmIlIP~VL   67 (146)
T PF15102_consen   58 ILMILIPLVL   67 (146)
T ss_pred             EEEEeHHHHH
Confidence            6777888443

>PHA03265 envelope glycoprotein D; Provisional

Probab=85.40  E-value=1.1  Score=39.18  Aligned_cols=28  Identities=39%  Similarity=0.593  Sum_probs=19.3

Q ss_pred             cEEEEeeH-HHHHHHHHHHHHHHHHHhhc
Q 028556          179 KTVAIIVG-VVAGLAILIVFLSICRRAME  206 (207)
Q Consensus       179 ~~~~iv~~-~v~~~~~~~~~~~~~~~~~~  206 (207)
                      ..+.|++| .|++++++-+++.++|||+|
T Consensus       348 ~~~g~~ig~~i~glv~vg~il~~~~rr~k  376 (402)
T PHA03265        348 TFVGISVGLGIAGLVLVGVILYVCLRRKK  376 (402)
T ss_pred             cccceEEccchhhhhhhhHHHHHHhhhhh
Confidence            34555544 56677777777888888876

>PF15012 DUF4519: Domain of unknown function (DUF4519)

Probab=83.49  E-value=0.4  Score=30.65  Aligned_cols=27  Identities=15%  Similarity=0.328  Sum_probs=20.0

Q ss_pred             CcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556          178 GKTVAIIVGVVAGLAILIVFLSICRRA  204 (207)
Q Consensus       178 ~~~~~iv~~~v~~~~~~~~~~~~~~~~  204 (207)
                      .++.-||+|++++++++++++.|+..|
T Consensus        28 ~kv~tVVlP~l~~~~~~Ivv~vy~kTR   54 (56)
T PF15012_consen   28 QKVFTVVLPTLAAVFLFIVVFVYLKTR   54 (56)
T ss_pred             HhheeEehhHHHHHHHHHhheeEEecc
Confidence            346788999999887777777666554

>PF12669 P12: Virus attachment protein p12 family

Probab=83.05  E-value=1.9  Score=27.89  Aligned_cols=7  Identities=43%  Similarity=1.099  Sum_probs=2.9

Q ss_pred             EeeHHHH
Q 028556          183 IIVGVVA  189 (207)
Q Consensus       183 iv~~~v~  189 (207)
                      |++++++
T Consensus         2 iII~~Ii    8 (58)
T PF12669_consen    2 IIIGIII    8 (58)
T ss_pred             eeHHHHH
Confidence            3444433

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=82.47  E-value=0.69  Score=35.82  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=11.3

Q ss_pred             EEEEeeHHHHHHHHHHHHHH
Q 028556          180 TVAIIVGVVAGLAILIVFLS  199 (207)
Q Consensus       180 ~~~iv~~~v~~~~~~~~~~~  199 (207)
                      +|.+||||-++++++++++.
T Consensus        51 VIGvVVGVGg~ill~il~lv   70 (154)
T PF04478_consen   51 VIGVVVGVGGPILLGILALV   70 (154)
T ss_pred             EEEEEecccHHHHHHHHHhh
Confidence            56778886555544444343

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
3a2e_A	108	Crystal Structure Of Ginkbilobin-2, The Novel Antif		9e-06

>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 12  TVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF 65
           T YG   C+  +  +DC+ C+ + VN+I  +C    GA +QL  C+++YE   F
Sbjct: 55  TAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	5e-18
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	2e-13

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3a2e_A	108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.9
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.89
3a2e_A	108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.8
2e79_A	108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.78
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	93.79
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	93.68
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	92.48
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	90.54
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	83.31
1afo_A	40	Glycophorin A; integral membrane protein, transmem	81.33

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}

Probab=99.90  E-value=6.4e-24  Score=155.10  Aligned_cols=94  Identities=24%  Similarity=0.536  Sum_probs=78.2

Q ss_pred             cccccccCCC-cCCcHHHHHHHHHHHHHHHHhh-----ccccc-----CCcceEEEEeccCCCChhhHHHHHHHHHHHHH
Q 028556           72 SIWYKKCSKS-VNNDVEFFKRRDDVLADLQTAV-----SFKVS-----SSGFVEGFAQCLGDLTPADCTTCLAEAIAKLK  140 (207)
Q Consensus        72 ~~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~a-----~f~~~-----~~~~vYgLaQC~~DLs~~~C~~CL~~a~~~~~  140 (207)
                      ...++.|++. .+.+..|..+++.||..|...+     .|+++     +..+||||+||+|||++.+|+.||+.++.+++
T Consensus         4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~   83 (108)
T 3a2e_A            4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRIF   83 (108)
T ss_dssp             CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHH
T ss_pred             ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            4456677553 4556678888999999987654     23321     23589999999999999999999999999999


Q ss_pred             hhcCCCcccEEEcCceeEEEeccCC
Q 028556          141 NLCGSAPAADVFLAQCYARYWASGY  165 (207)
Q Consensus       141 ~~c~~~~gg~i~~~~C~lRYe~~~F  165 (207)
                      ++|++++||+|++++|+||||+++|
T Consensus        84 ~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           84 SICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             HHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             HHCCCCceEEEECCCEEEEEeCCcC
Confidence            9999999999999999999999998

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}

Probab=99.80  E-value=4.4e-20  Score=134.68  Aligned_cols=59  Identities=32%  Similarity=0.763  Sum_probs=56.2

Q ss_pred             CCCCCcEEEEEeccCCCChhchHHHHHHHHHHHhhhCCCCcceEEEcceeEEEEEeeee
Q 028556            7 TPPEATVYGLYQCRGDLKTTDCSRCIESAVNQISLVCPYTYGASLQLEGCYVRYEHIDF   65 (207)
Q Consensus         7 ~~~~~~vygl~qCr~D~~~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lrys~~~f   65 (207)
                      +.+.++||||+|||+|+++++|+.||+.|+.++++.||++++|+||++.|+||||+++|
T Consensus        50 ~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           50 SGGAPTAYGRATCKQSISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             STTCCCEEEEEEECTTSCHHHHHHHHHHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             CCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence            44568999999999999999999999999999999999999999999999999999987

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=93.79  E-value=0.021  Score=32.95  Aligned_cols=28  Identities=36%  Similarity=0.557  Sum_probs=19.2

Q ss_pred             CCcEEEEeeHHHHHHHHHHHHHHHHHHh
Q 028556          177 VGKTVAIIVGVVAGLAILIVFLSICRRA  204 (207)
Q Consensus       177 ~~~~~~iv~~~v~~~~~~~~~~~~~~~~  204 (207)
                      .+.+..||+++++++++++.+.+|+|||
T Consensus        10 ~GaIAGiVvG~v~gv~li~~l~~~~~rr   37 (38)
T 2k1k_A           10 GGEIVAVIFGLLLGAALLLGILVFRSRR   37 (38)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCceeeeehHHHHHHHHHHHHHHHHeec
Confidence            3456678888888877666666666655

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=93.68  E-value=0.012  Score=35.07  Aligned_cols=27  Identities=19%  Similarity=0.410  Sum_probs=14.0

Q ss_pred             EEEEeeHHHHHHHHHHHHHHHHHHhhc
Q 028556          180 TVAIIVGVVAGLAILIVFLSICRRAME  206 (207)
Q Consensus       180 ~~~iv~~~v~~~~~~~~~~~~~~~~~~  206 (207)
                      +.++|+|+++.+++.+++..|+|||+.
T Consensus        14 Ia~~vVGvll~vi~~l~~~~~~RRR~~   40 (44)
T 2jwa_A           14 IISAVVGILLVVVLGVVFGILIKRRQQ   40 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHHHHHHHHhheehhhh
Confidence            455677755444344444455666543

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=92.48  E-value=0.035  Score=33.06  Aligned_cols=12  Identities=8%  Similarity=0.099  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHhh
Q 028556          194 LIVFLSICRRAM  205 (207)
Q Consensus       194 ~~~~~~~~~~~~  205 (207)
                      +++.+.|++|++
T Consensus        27 i~~~~~~~~RRr   38 (44)
T 2ks1_B           27 VALGIGLFMRRR   38 (44)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhh
Confidence            333334444443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=90.54  E-value=0.2  Score=29.66  Aligned_cols=12  Identities=8%  Similarity=0.094  Sum_probs=5.1

Q ss_pred             HHHHHHHHHHhh
Q 028556          194 LIVFLSICRRAM  205 (207)
Q Consensus       194 ~~~~~~~~~~~~  205 (207)
                      +++.+.|++|++
T Consensus        26 i~~~~~~~~RRR   37 (44)
T 2l2t_A           26 VGLTFAVYVRRK   37 (44)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhh
Confidence            333344444444

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=83.31  E-value=0.22  Score=33.33  Aligned_cols=24  Identities=4%  Similarity=0.239  Sum_probs=15.9

Q ss_pred             EEEEeeHHHHHHHHHHHHHHHHHH
Q 028556          180 TVAIIVGVVAGLAILIVFLSICRR  203 (207)
Q Consensus       180 ~~~iv~~~v~~~~~~~~~~~~~~~  203 (207)
                      +++|+++++++++++.+++.++||
T Consensus        10 ~~~Iv~gvi~gilliGllllliwk   33 (79)
T 2knc_B           10 ILVVLLSVMGAILLIGLAALLIWK   33 (79)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHH
Confidence            566777888777666555555555

>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A

Probab=81.33  E-value=0.96  Score=25.83  Aligned_cols=28  Identities=36%  Similarity=0.558  Sum_probs=18.5

Q ss_pred             EEEEeeHHHHHHHHHHHHHHHH-HHhhcC
Q 028556          180 TVAIIVGVVAGLAILIVFLSIC-RRAMER  207 (207)
Q Consensus       180 ~~~iv~~~v~~~~~~~~~~~~~-~~~~~~  207 (207)
                      ++.|+.++.++++..++++.|+ ||..||
T Consensus        12 i~lII~~vmaGiIG~IllI~y~I~rl~Kk   40 (40)
T 1afo_A           12 ITLIIFGVMAGVIGTILLISYGIRRLIKK   40 (40)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4456778888877777777765 444444

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00