Citrus Sinensis ID: 028562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcEEEHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcEcccHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVSLLLSSmadnvspskqFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGyrklsnekklewnnrgfsTFHAFIASTASLYLLLLSDlfsedyydELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDvaglkssniyICNGVALFLGWLVMSCMP
Flexible Loop (DISEMBL)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINrtsslsetVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Low Complexity Region (SEG)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAslyllllsdlfsedyydELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Disordered region (IsUnstruct)
****************KQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSC**
Disordered Region (DISOPRED)
**SL***SMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Disordered Region (DISEMBL)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Disordered Region (DISPRO)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSLLLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCMP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q6PGS5	262	Transmembrane protein 56-	N/A	no	0.714	0.564	0.297	5e-15
Q96MV1	263	Transmembrane protein 56	yes	no	0.681	0.536	0.299	3e-13
Q550S9	257	Transmembrane protein 56	yes	no	0.772	0.622	0.308	7e-13
Q5XIY2	264	Transmembrane protein 56-	no	no	0.695	0.545	0.293	1e-12
Q8CGF5	276	Transmembrane protein 56	yes	no	0.661	0.496	0.304	3e-12
Q6GLX2	258	Transmembrane protein 56-	N/A	no	0.685	0.550	0.322	4e-12
Q6P4N1	259	Transmembrane protein 56	no	no	0.685	0.548	0.302	4e-11
Q55BP8	272	Transmembrane protein 56	no	no	0.632	0.481	0.349	7e-08
Q0VD42	245	Transmembrane protein 136	no	no	0.603	0.510	0.280	1e-06
Q1LXV8	242	Transmembrane protein 136	no	no	0.584	0.5	0.285	2e-06

>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 49  GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSE 106
           G+ KLS  +K+EWN+R  S+FHA +     LY+L+  D  + D  + D  ++        
Sbjct: 37  GFHKLSARQKIEWNSRTVSSFHALVVGCFCLYILVYDDAVNADPVWGDPFMVKLN----- 91

Query: 107 TVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTE 166
             + ++ GY +SDL +I++ +  +G   +V HH  ++++ +  L  G    +    L  E
Sbjct: 92  --VAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVLGEGMLPYFGNFRLIAE 149

Query: 167 ITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVM 203
            +TPFVN RW+ +V G  K S   + NGV + + + ++
Sbjct: 150 FSTPFVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFIV 187

Xenopus laevis (taxid: 8355)

>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 49  GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
           G+  LS +KK+EWN+R  ST H+ +     LY+ L  +    D      +    SL+   
Sbjct: 37  GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKAD-----PLWGGPSLANVN 91

Query: 109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
           + I+ GY +SDL++I+  +  +G   +++HH  S+++ +L L +G         L  E++
Sbjct: 92  IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query: 169 TPFVNLRWYLDVAGL-KSSNIYICNGV 194
           +PFVN RW+ +     K S   + NG+
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGI 178

Homo sapiens (taxid: 9606)

>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 12/172 (6%)

Query: 38  LTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELI 97
           L  II ++  K        K++EW NR  ST +A + S  S+Y L         YY+E I
Sbjct: 26  LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCL---------YYNEWI 76

Query: 98  INR---TSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGK 154
           +N    TS +S  +      YF+ D  +  +    L     +LHH +++ S       G 
Sbjct: 77  VNSLRSTSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGL 136

Query: 155 AQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCM 206
           A   +L   FTEITTP +NLR++L    LK+  +Y+ NG+ +F+G+++    
Sbjct: 137 AHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVLFRVF 188

Dictyostelium discoideum (taxid: 44689)

>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 6/150 (4%)

Query: 48  KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
           +GY KL   K  +WN+R  ST HA I     LY+L   D  +ED      +    +L + 
Sbjct: 33  QGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILWYDDAVNED-----PVWGDPNLVKL 87

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
            + I+ GY   DL ++   +  +G + +V HH  ++++    L  G    +    L +E+
Sbjct: 88  NVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPYFANFRLISEL 147

Query: 168 TTPFVNLRWYLD-VAGLKSSNIYICNGVAL 196
           +TPFVN RW+ + +A  ++  + + NG+A+
Sbjct: 148 STPFVNQRWFFEALAYPRTHQLVVANGIAM 177

Danio rerio (taxid: 7955)

>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 14/151 (9%)

Query: 49  GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETV 108
           GY  LS +KK+EWN+R  ST H+ +     LYL          ++DE  I        T 
Sbjct: 50  GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLF---------FFDEATITDPLWGDPTY 100

Query: 109 LGISI----GYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF 164
           + I+I    GY +SDL +IL+ +  +G   +++HH   + + +  L +G         L 
Sbjct: 101 VNINIATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLL 160

Query: 165 TEITTPFVNLRWYLDVAGL-KSSNIYICNGV 194
            E+++PFVN RW+ +     K S   + NG+
Sbjct: 161 AELSSPFVNQRWFFEALKYPKFSKANVINGI 191

Mus musculus (taxid: 10090)

>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1

 Score = 71.6 bits (174), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 50  YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
           YR+LS  K+ EW++R  ST HA I  +A LY+L   D  + D  + D   +         
Sbjct: 37  YRQLSFGKQCEWDSRFVSTNHALIVGSACLYILAYDDAVNADPIWGDPFWVKMN------ 90

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
            + I+ GY + DL ++   +  +     V HH    +S    L  G    +    L +E+
Sbjct: 91  -VAITCGYLVQDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 149

Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFL 198
           +TPFVN RW+ DV G  +SS   + NG+A+ L
Sbjct: 150 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMAL 181

Xenopus laevis (taxid: 8355)

>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 10/152 (6%)

Query: 50  YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDELIINRTSSLSET 107
           YR+LS  K+ EW++R  ST HA +  +  LY+L   +  + D  + D   +         
Sbjct: 38  YRQLSFGKQCEWDSRCVSTTHALVVGSGCLYILAYDEAVNADPIWGDPFWVKMN------ 91

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
            + I+ GY + DL ++   +  +     V HH    +S    L  G    +    L +E+
Sbjct: 92  -VAITCGYLVHDLLLLARFWKVMRDPYMVCHHLAVFYSYGYVLNRGVLPYFANFRLISEL 150

Query: 168 TTPFVNLRWYLDVAG-LKSSNIYICNGVALFL 198
           +TPFVN RW+ DV G  +SS   + NG+A+ L
Sbjct: 151 STPFVNQRWFFDVIGKPRSSWPVLLNGLAMAL 182

Xenopus tropicalis (taxid: 8364)

>sp|Q55BP8|TM56C_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56c PE=3 SV=1

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 12/143 (8%)

Query: 48  KGYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSET 107
           K Y  L+ +KKLEW+ R  S  HAF+     L   ++S + S  Y D       S L   
Sbjct: 53  KAYTTLTEKKKLEWDQRVVSMIHAFLV----LPFCIISAVESFKYGDIFYFQNDSLL--M 106

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHH--GLSMFSIFLALVSGKAQIY--ILMVL 163
           VL IS GYF+ DL +I +  P L G   ++H   GLS  +I++AL  G+      + ++L
Sbjct: 107 VLSISSGYFIWDL-IICYKDPKLVGTPMIIHAIMGLSS-NIYVALPHGRPCFVPIVAILL 164

Query: 164 FTEITTPFVNLRWYLDVAGLKSS 186
            TEI+T  +N++ ++ V   KS 
Sbjct: 165 ITEISTIPLNMKGFIQVVNSKSK 187

Dictyostelium discoideum (taxid: 44689)

>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 52  KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGI 111
           +L+  +  EWN R  +  H  ++   S Y+  +   +   +      +  + L   VL +
Sbjct: 25  RLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPG----SPNTPLQVHVLCL 80

Query: 112 SIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TEITTP 170
           ++GYF+ DL   ++      G   + HH LS+  I +ALV G++   +  VLF +EIT P
Sbjct: 81  TLGYFIFDLGWCIYFRSE--GPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEITNP 138

Query: 171 FVNLRWYLDVAG 182
            + +RW+L   G
Sbjct: 139 LLQIRWFLRETG 150

Bos taurus (taxid: 9913)

>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 19/140 (13%)

Query: 54  SNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLF------SEDYYDELIINRTSSLSET 107
           ++ +  EWN R  + FH  +    + Y+  ++  +      +E+ Y +++          
Sbjct: 26  NSGRDSEWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTYFQIL---------- 75

Query: 108 VLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF-TE 166
            L +S+GYFL D+A  ++      G   + HH +S+F I LAL  G++ I    VLF +E
Sbjct: 76  TLVLSLGYFLFDMAWCVYFRTE--GPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSE 133

Query: 167 ITTPFVNLRWYLDVAGLKSS 186
           IT P +  RW+L   G   S
Sbjct: 134 ITNPLLQARWFLKRMGCYDS 153

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
297745726	257	unnamed protein product [Vitis vinifera]	0.917	0.739	0.773	9e-82
225434283	267	PREDICTED: transmembrane protein 56-like	0.917	0.711	0.773	1e-81
255570873	267	conserved hypothetical protein [Ricinus	0.922	0.715	0.717	7e-77
363807648	280	uncharacterized protein LOC100780614 [Gl	0.951	0.703	0.685	2e-73
356569957	280	PREDICTED: LOW QUALITY PROTEIN: transmem	0.956	0.707	0.666	2e-72
356553204	269	PREDICTED: transmembrane protein 56-B-li	0.927	0.713	0.687	4e-71
449444320	260	PREDICTED: transmembrane protein 56-B-li	0.942	0.75	0.661	2e-70
388501646	264	unknown [Medicago truncatula]	0.917	0.719	0.689	4e-69
363814483	259	uncharacterized protein LOC100777722 [Gl	0.932	0.745	0.666	9e-68
224145378	265	predicted protein [Populus trichocarpa]	0.913	0.713	0.735	2e-67

>gi|297745726|emb|CBI15782.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 147/190 (77%), Positives = 170/190 (89%)

Query: 13  VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
           VS SK+F+W+ SVF G+I C IVY+LTG++S LCFKGY KLSN +K+EWNNRGFSTFHA 
Sbjct: 4   VSSSKEFHWMTSVFFGMIFCKIVYELTGLLSNLCFKGYTKLSNTEKVEWNNRGFSTFHAI 63

Query: 73  IASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG 132
           I + ASLYLLL+SDLF ED  DE IINR S+LS+T+LGISIGYFLSDLAMILW +PALGG
Sbjct: 64  IVAVASLYLLLVSDLFDEDSRDESIINRASTLSDTILGISIGYFLSDLAMILWNFPALGG 123

Query: 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
           LEYVLHHGLSMFSIFL+L+SG+ Q+YILMVLF+E TTPFVNLRW+LDVAGLKSSN+YICN
Sbjct: 124 LEYVLHHGLSMFSIFLSLISGQGQVYILMVLFSESTTPFVNLRWHLDVAGLKSSNLYICN 183

Query: 193 GVALFLGWLV 202
           G+ALF GWLV
Sbjct: 184 GIALFFGWLV 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434283|ref|XP_002263097.1| PREDICTED: transmembrane protein 56-like [Vitis vinifera]

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/190 (77%), Positives = 170/190 (89%)

Query: 13  VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
           VS SK+F+W+ SVF G+I C IVY+LTG++S LCFKGY KLSN +K+EWNNRGFSTFHA 
Sbjct: 14  VSSSKEFHWMTSVFFGMIFCKIVYELTGLLSNLCFKGYTKLSNTEKVEWNNRGFSTFHAI 73

Query: 73  IASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG 132
           I + ASLYLLL+SDLF ED  DE IINR S+LS+T+LGISIGYFLSDLAMILW +PALGG
Sbjct: 74  IVAVASLYLLLVSDLFDEDSRDESIINRASTLSDTILGISIGYFLSDLAMILWNFPALGG 133

Query: 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
           LEYVLHHGLSMFSIFL+L+SG+ Q+YILMVLF+E TTPFVNLRW+LDVAGLKSSN+YICN
Sbjct: 134 LEYVLHHGLSMFSIFLSLISGQGQVYILMVLFSESTTPFVNLRWHLDVAGLKSSNLYICN 193

Query: 193 GVALFLGWLV 202
           G+ALF GWLV
Sbjct: 194 GIALFFGWLV 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570873|ref|XP_002526388.1| conserved hypothetical protein [Ricinus communis] gi|223534250|gb|EEF35964.1| conserved hypothetical protein [Ricinus communis]

 Score =  292 bits (747), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 140/195 (71%), Positives = 167/195 (85%), Gaps = 4/195 (2%)

Query: 8   SMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFS 67
           S+ D V+P     WL S+FSGIIMC IVYKLTG++S+LCF GY KL+  +K+EWNNRGFS
Sbjct: 12  SIMDTVNP----MWLASIFSGIIMCIIVYKLTGVLSLLCFNGYGKLTKAQKIEWNNRGFS 67

Query: 68  TFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLY 127
           TFHA + ++AS YLL+LS LF ED +DELIINR+S +S +VLG+SIGYFL+DLAMILW +
Sbjct: 68  TFHAIVVASASFYLLMLSGLFDEDSHDELIINRSSDISNSVLGVSIGYFLADLAMILWYF 127

Query: 128 PALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSN 187
           PALGGLEYVLHHGLSM+SI LAL+SG+AQIYILM+LF+E TTPFVNLRWYLDVAG KSS 
Sbjct: 128 PALGGLEYVLHHGLSMYSIILALLSGQAQIYILMILFSESTTPFVNLRWYLDVAGQKSSK 187

Query: 188 IYICNGVALFLGWLV 202
           +Y+ NGV LFLGWLV
Sbjct: 188 LYVSNGVLLFLGWLV 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807648|ref|NP_001242160.1| uncharacterized protein LOC100780614 [Glycine max] gi|255640748|gb|ACU20658.1| unknown [Glycine max]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 165/197 (83%)

Query: 6   LSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRG 65
           L S +D  +P+K+  WL SVF+GII C IVY+LT I+S L FKGY KLS+ +K+EWNNRG
Sbjct: 13  LVSSSDFATPNKEIQWLGSVFTGIIFCVIVYRLTAILSSLLFKGYDKLSSAQKIEWNNRG 72

Query: 66  FSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILW 125
           FSTFHA  AS  S YLL+LSD+F++D ++ELIINR+S+ S  VLGISIGYFL+DLAMILW
Sbjct: 73  FSTFHALFASFMSFYLLVLSDIFNKDSHEELIINRSSTFSNLVLGISIGYFLADLAMILW 132

Query: 126 LYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKS 185
            +PALGGLEYVLHHGLSMFSI  +L+SG+  IYILMVLF+E TTPFVNLRW+LD+AGLKS
Sbjct: 133 HFPALGGLEYVLHHGLSMFSIIQSLLSGQGLIYILMVLFSESTTPFVNLRWHLDIAGLKS 192

Query: 186 SNIYICNGVALFLGWLV 202
           S +Y+ NG+ALF GWL+
Sbjct: 193 SKLYVWNGIALFFGWLI 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569957|ref|XP_003553160.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 56-B-like [Glycine max]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 165/198 (83%)

Query: 5   LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNR 64
           +L S  D  +P+K+  WL SVF+GII C +VY+LT I+S L FKGY KLS+ +K+EWNNR
Sbjct: 12  VLVSSYDFATPNKEIQWLGSVFTGIIFCVVVYRLTAILSSLLFKGYGKLSSAEKIEWNNR 71

Query: 65  GFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMIL 124
           GFSTFHA  AS  S YLL+LSD+F++D ++EL+INR+S+ S +VLGISIGYFL+DLAMIL
Sbjct: 72  GFSTFHALFASFTSFYLLVLSDIFNKDSHEELVINRSSTFSNSVLGISIGYFLADLAMIL 131

Query: 125 WLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLK 184
           W +PALGGLEYVLHHGLSMFSI  +L+ G+ QIYILMVLF+E TTPFVNLRW+LD+A LK
Sbjct: 132 WHFPALGGLEYVLHHGLSMFSIIQSLLCGQGQIYILMVLFSESTTPFVNLRWHLDIADLK 191

Query: 185 SSNIYICNGVALFLGWLV 202
           SS +Y+ NG+ALF GWL+
Sbjct: 192 SSKLYVWNGIALFFGWLI 209

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553204|ref|XP_003544948.1| PREDICTED: transmembrane protein 56-B-like [Glycine max]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 160/192 (83%)

Query: 11  DNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFH 70
           D  +PSK   WL S+FSGII+C + Y  T I+S L FKGY KLS+E+K+EWNNRGFSTFH
Sbjct: 14  DYATPSKVVLWLASIFSGIILCVLAYTSTAILSSLLFKGYGKLSSEEKIEWNNRGFSTFH 73

Query: 71  AFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL 130
           A   S+AS YLL+LSD+F+ +  D+++INR+S LS+TVLG+SIGYFL+DLAMILW +PAL
Sbjct: 74  ALFVSSASFYLLILSDVFNVNSQDDIVINRSSRLSDTVLGVSIGYFLTDLAMILWNFPAL 133

Query: 131 GGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYI 190
           GGLEYVLHHG+S+ SI L L+SG+  IYILMVLF+E TTPFVNLRWYLDVAGLKSS +YI
Sbjct: 134 GGLEYVLHHGISIGSITLCLLSGQVHIYILMVLFSESTTPFVNLRWYLDVAGLKSSKLYI 193

Query: 191 CNGVALFLGWLV 202
            NG+ALF GWLV
Sbjct: 194 WNGIALFFGWLV 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444320|ref|XP_004139923.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus] gi|449475829|ref|XP_004154563.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/195 (66%), Positives = 157/195 (80%)

Query: 8   SMADNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFS 67
           +++D   PSK+  WL SVFSG + C IVY LTGIIS+  FK Y KLSN  K+EWNNRGFS
Sbjct: 2   TISDTSGPSKELLWLASVFSGFVFCKIVYTLTGIISLQSFKAYVKLSNFGKVEWNNRGFS 61

Query: 68  TFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLY 127
           TFHA +A+++SLYL+L S  F     +EL+I RTSSLS+  LG SIGYFLSDLAM+LW++
Sbjct: 62  TFHALVAASSSLYLVLFSSTFDPSSSNELLIRRTSSLSDMTLGFSIGYFLSDLAMVLWVF 121

Query: 128 PALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSN 187
           PALGG EYV+HH LS+FSI  +L+SG+ Q+YILMVLFTE TTPFVNLRWYLD AG K+SN
Sbjct: 122 PALGGFEYVVHHVLSLFSIIQSLLSGQGQVYILMVLFTESTTPFVNLRWYLDNAGQKNSN 181

Query: 188 IYICNGVALFLGWLV 202
           +Y+ NG+ALFLGWLV
Sbjct: 182 LYVINGIALFLGWLV 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501646|gb|AFK38889.1| unknown [Medicago truncatula]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 153/190 (80%)

Query: 13  VSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAF 72
            + SK+  WL+SVFSGII   IVY+LT   S   F GYRKLS+  K+EWNNRGFSTFHAF
Sbjct: 11  ATQSKEAQWLLSVFSGIIFSLIVYQLTAAFSSRLFIGYRKLSSAGKVEWNNRGFSTFHAF 70

Query: 73  IASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG 132
            AS  SLYLL+LSDLF +D  ++L++NRTS+ S +VL  S GYFL+DLA I+W +PALGG
Sbjct: 71  FASFTSLYLLILSDLFKDDSQEKLVVNRTSTFSNSVLSFSTGYFLTDLAFIIWNFPALGG 130

Query: 133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICN 192
           LEYVLHHGLS+FSI  +L+SG+A IYILMVLFTE TTPFVNLRWYLD AGLKSS +YI N
Sbjct: 131 LEYVLHHGLSLFSIIQSLLSGQAHIYILMVLFTEGTTPFVNLRWYLDTAGLKSSKLYIWN 190

Query: 193 GVALFLGWLV 202
           GVALF GWLV
Sbjct: 191 GVALFFGWLV 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814483|ref|NP_001242876.1| uncharacterized protein LOC100777722 [Glycine max] gi|255634999|gb|ACU17858.1| unknown [Glycine max]

 Score =  261 bits (668), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 160/195 (82%), Gaps = 2/195 (1%)

Query: 11  DNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFH 70
           D  +PSK   WL S+FSGII+C +VY  T I+S L FKGY KLS+ +K+EWNNRGFSTFH
Sbjct: 14  DYATPSKVVLWLASIFSGIILCVLVYTSTAILSSLLFKGYGKLSSAEKIEWNNRGFSTFH 73

Query: 71  AFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL 130
           A   S+AS YLL+LSD+F+ + + +++INR+S+LS+ VLGISIGYFL+DLAMILW +PAL
Sbjct: 74  ALFVSSASFYLLILSDVFNVNSHGDVVINRSSTLSDAVLGISIGYFLTDLAMILWNFPAL 133

Query: 131 GGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYI 190
           GGLEYVLHHGLS+ SI L L+SG+  IYILMVLF+E TTPFVNLRWYLD+AGLKSS +YI
Sbjct: 134 GGLEYVLHHGLSIGSITLCLLSGQVHIYILMVLFSESTTPFVNLRWYLDIAGLKSSKLYI 193

Query: 191 CNGVALFLGWLVMSC 205
            NG+ALF G  V+ C
Sbjct: 194 WNGIALFFG--VVGC 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145378|ref|XP_002325620.1| predicted protein [Populus trichocarpa] gi|222862495|gb|EEF00002.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 162/189 (85%)

Query: 14  SPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFI 73
           + +KQF+ L SV SGII C IVYKLT  +S L FKGY KL++ +K+EWNNRGFSTFHA  
Sbjct: 13  TATKQFHLLSSVLSGIIACGIVYKLTAFVSRLYFKGYGKLTDAQKVEWNNRGFSTFHALF 72

Query: 74  ASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGL 133
            ++ASLYLLLLS LF ED  DEL++NRTS+LS + LGISIGYFLSDLAMIL+ +PALGG+
Sbjct: 73  VASASLYLLLLSGLFYEDSRDELVVNRTSTLSNSTLGISIGYFLSDLAMILFHFPALGGM 132

Query: 134 EYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNG 193
           EY+LHHGLSMFSI LAL+SG+AQIYILMVLF+EITTPFVNLRWYLDVAG KSS +YI NG
Sbjct: 133 EYLLHHGLSMFSIILALLSGQAQIYILMVLFSEITTPFVNLRWYLDVAGQKSSKLYIWNG 192

Query: 194 VALFLGWLV 202
           V LF+GWLV
Sbjct: 193 VLLFMGWLV 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2122814	266	AT4G10360 "AT4G10360" [Arabido	0.927	0.721	0.541	3.5e-52
TAIR|locus:504955499	268	AT4G19645 "AT4G19645" [Arabido	0.859	0.664	0.502	1.7e-43
TAIR|locus:2197480	278	AT1G31300 "AT1G31300" [Arabido	0.864	0.643	0.486	6.6e-42
UNIPROTKB|F1NSV0	261	TMEM56 "Uncharacterized protei	0.869	0.689	0.276	1.4e-16
ZFIN|ZDB-GENE-090402-1	276	tmem56a "transmembrane protein	0.425	0.318	0.333	6.1e-16
UNIPROTKB|Q96MV1	263	TMEM56 "Transmembrane protein	0.724	0.570	0.256	8.4e-16
RGD|1563041	263	Tmem56 "transmembrane protein	0.724	0.570	0.262	3.4e-13
ZFIN|ZDB-GENE-070912-350	263	si:dkey-10f21.4 "si:dkey-10f21	0.734	0.577	0.281	5.6e-13
UNIPROTKB|E2RSK2	263	TMEM56 "Uncharacterized protei	0.864	0.680	0.236	1.6e-12
UNIPROTKB|G3MZJ1	266	G3MZJ1 "Uncharacterized protei	0.763	0.593	0.273	2.3e-12

TAIR|locus:2122814 AT4G10360 "AT4G10360" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 104/192 (54%), Positives = 129/192 (67%)

Query:    11 DNVSPSKQFYWLVSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFH 70
             D    S+Q   L S+ SG +MC IVY LT  IS L F  Y KL ++ ++EWNNRGFSTFH
Sbjct:     7 DGFVSSRQLLLLASICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFH 66

Query:    71 AFIASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPAL 130
             A   S A                 + +IN T+ LSE+V+GIS+GYFL+DLAMI W +P L
Sbjct:    67 AVFTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTL 126

Query:   131 GGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYI 190
             GG+EYV HH LSMF+I L++ SG++Q YI +VL +E TTPFVNLRWYLD +G K S  Y 
Sbjct:   127 GGIEYVFHHFLSMFAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYT 186

Query:   191 CNGVALFLGWLV 202
              NG+ALFLGWLV
Sbjct:   187 LNGIALFLGWLV 198

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:504955499 AT4G19645 "AT4G19645" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 90/179 (50%), Positives = 115/179 (64%)

Query:    24 SVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHA-FIASTAXXXXX 82
             SV  GI +C +VY LT + S +  K Y  L+  K++EWNNRG ST HA FI+  A     
Sbjct:    28 SVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKRIEWNNRGISTVHAIFISFMALYFAF 87

Query:    83 XXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLS 142
                          L + R S LS   LG+S+GYFL+DL MI WLYP+LGG EY+LHH LS
Sbjct:    88 FSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLS 147

Query:   143 MFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWL 201
               ++  +L SG+AQ+Y  MVL +E+TTP +NLRWYLD+AGLK S  Y+ NGVA+F  WL
Sbjct:   148 GTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRWYLDIAGLKRSKAYLVNGVAIFFAWL 206

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2197480 AT1G31300 "AT1G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 87/179 (48%), Positives = 113/179 (63%)

Query:    24 SVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXX 83
             SV +GI +C +VY L   IS    K Y  L+  +++EWNNRG ST HA   S        
Sbjct:    37 SVLTGIFLCKVVYDLCHFISNSHSKTYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVF 96

Query:    84 XXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSM 143
                        +L++ R+S LS   LGISIGYFL+DL MI W YP+LGG+EY++HH LS 
Sbjct:    97 WSDLFSDRWHNDLVVFRSSRLSSLGLGISIGYFLADLGMIFWKYPSLGGIEYIVHHSLSG 156

Query:   144 FSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLV 202
              ++  +L SG+ Q+Y  MVL +EITTP +NLRWYLD AG+K S  Y+ NGV +FL WLV
Sbjct:   157 VAVAYSLFSGEGQLYTYMVLISEITTPEINLRWYLDTAGMKKSLAYVVNGVFIFLAWLV 215

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NSV0 TMEM56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 52/188 (27%), Positives = 92/188 (48%)

Query:    23 VSVFSGIIMCTIVYKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXX 82
             +++ S  I   + + L+  +S     G+  LS ++K+EWN+R  STFHA +         
Sbjct:    10 IALASFTIFQLLFHVLSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYIL 69

Query:    83 XXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLS 142
                            +    S+ +  + I+ GY +SDL +I+  + A+G   +V+HH  +
Sbjct:    70 LYDEAVNADH-----LWGDPSIVKLNIAITTGYLISDLLLIICYWKAIGDKFFVIHHLAA 124

Query:   143 MFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWL 201
             +++ +  L  G    +    L  E +TPFVN RW+ +V G  KSS   + NGV + + + 
Sbjct:   125 LYAYYFVLSKGLLAYFGNFRLLAEFSTPFVNQRWFFEVLGYPKSSKANMINGVLMTVVFF 184

Query:   202 VM--SCMP 207
             V+  + MP
Sbjct:   185 VVRIAVMP 192

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-090402-1 tmem56a "transmembrane protein 56a" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
 Identities = 30/90 (33%), Positives = 50/90 (55%)

Query:   109 LGISIGYFLS-DLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEI 167
             + I+ GY +S DL +I + + A+G   +V+HH  ++++ +  L  G    +    L  E 
Sbjct:   105 VSITTGYLISADLLLIFYYWRAIGDKFFVIHHLAALYAYYYVLGQGMLPYFANFRLLAEF 164

Query:   168 TTPFVNLRWYLDVAGL-KSSNIYICNGVAL 196
             +TP VN RW+ +V G  KSS   + NGV +
Sbjct:   165 STPCVNQRWFFEVLGYPKSSRPNMANGVLM 194

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q96MV1 TMEM56 "Transmembrane protein 56" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
 Identities = 40/156 (25%), Positives = 76/156 (48%)

Query:    49 GYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETV 108
             G+  LS +KK+EWN+R  ST H+ +                        +    SL+   
Sbjct:    37 GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEATKADP-----LWGGPSLANVN 91

Query:   109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
             + I+ GY +SDL++I+  +  +G   +++HH  S+++ +L L +G         L  E++
Sbjct:    92 IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query:   169 TPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVM 203
             +PFVN RW+ +     K S   + NG+ + + + ++
Sbjct:   152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFFIV 187

GO:0016021 "integral to membrane" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1563041 Tmem56 "transmembrane protein 56" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 41/156 (26%), Positives = 73/156 (46%)

Query:    49 GYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXXXXXXXXXXXXXELIINRTSSLSETV 108
             GY  LS EKK+EWN+R  ST H+ +                        +    SL +  
Sbjct:    37 GYNSLSTEKKIEWNSRVVSTCHSMLVGIFGLYLFFFDEATIADP-----LWGDPSLVKIN 91

Query:   109 LGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEIT 168
             +  + GY +SDL +IL+ +  +G   +++HH   + + +  L  G         L  E++
Sbjct:    92 ISTASGYLISDLLIILFNWKVIGDKFFIIHHCAGLIAYYFVLKIGVLAYIANFRLLAELS 151

Query:   169 TPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWLVM 203
             +PFVN RW+ +V    K S + + NG+ + + + ++
Sbjct:   152 SPFVNQRWFFEVLKYPKFSKVNVINGILMTVVFFIV 187

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-350 si:dkey-10f21.4 "si:dkey-10f21.4" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 45/160 (28%), Positives = 78/160 (48%)

Query:    45 LCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXXXXXXXXXXXXXXELIINRTSSL 104
             LC  G+ +LS  +K EWN+R  ST HA +                        +   ++L
Sbjct:    34 LC-GGFLRLSPTQKTEWNSRAVSTVHALVVGLFCLYIYIFDESIQKDP-----VWGDATL 87

Query:   105 SETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLF 164
              +  + ++ GY +SDL ++   + ++G   +V+HH  ++++ +  L  G    +    L 
Sbjct:    88 VKLNVAVTSGYLMSDLLLMFTSWESIGEKYFVIHHFAALYAYYYVLSQGILPYFANFRLL 147

Query:   165 TEITTPFVNLRWYLDVAGL-KSSNIYICNGVAL-FLGWLV 202
             +E +TPFVN RW+  + G  K S   + NGVA+ F  +LV
Sbjct:   148 SEFSTPFVNQRWFFHMLGYHKLSKPSLLNGVAMAFTFFLV 187

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2RSK2 TMEM56 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 167 (63.8 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 44/186 (23%), Positives = 85/186 (45%)

Query:    24 SVFSGIIMCTIV-YKLTGIISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXXXXX 82
             +VF+      ++ Y ++   S     G+  LS EKK+EWN+R  ST H+ +         
Sbjct:    11 TVFTSFFTFQLLFYFISFWFSAKVSPGFVSLSFEKKIEWNSRVVSTCHSLVVGLFGLYLF 70

Query:    83 XXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLS 142
                            +   SSL +  + I+ GY +SDL +++  +  +G   +++HH  +
Sbjct:    71 FFDEATMADP-----LWGDSSLVKVNISIATGYLISDLLILILYWKVIGDKYFIIHHCAA 125

Query:   143 MFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGL-KSSNIYICNGVALFLGWL 201
             +++ +  L  G         L  E+++PFVN RW+ +     K S   + NG+ + + + 
Sbjct:   126 LYAYYYVLRYGVLASIGNFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILMTVVFF 185

Query:   202 VMSCMP 207
             ++   P
Sbjct:   186 IVRIAP 191

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3MZJ1 G3MZJ1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 2.3e-12, P = 2.3e-12
 Identities = 46/168 (27%), Positives = 80/168 (47%)

Query:    22 LVSV-FSGIIMCTIVYKLTGI-ISVLCFKGYRKLSNEKKLEWNNRGFSTFHAFIASTAXX 79
             L+S  F+      I++ +     S     G+  L+ +KK+EWN+R  ST H+ +      
Sbjct:     8 LISTCFASFFTFQIIFHVVSYWFSAKISPGFNNLNFKKKIEWNSRVVSTCHSLVVGLVGL 67

Query:    80 XXXXXXXXXXXXXXXELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHH 139
                            + +   TS L +  + I+ GY +SDL +++W +  +G   +V+HH
Sbjct:    68 YIFLFDEAGIA----DPLWGDTS-LGKVNVAIASGYLVSDLLILIWYWKVIGDKYFVIHH 122

Query:   140 GLSMFSIFLALVSGKAQIYI-LMVLFTEITTPFVNLRWYLDVAGLKSS 186
               ++++    L  G   +Y+    L  E+++PFVN RW L    LKSS
Sbjct:   123 CTALYAYHFVLNDG-VLVYVGNFRLLAELSSPFVNQRW-LKFNMLKSS 168

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023899001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (257 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	2e-19
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	2e-15

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score = 81.6 bits (202), Expect = 2e-19
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 57  KKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYF 116
           K  E +NR  S  H+ IA   +LY           Y     I   S L++     S+GYF
Sbjct: 2   KFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLY----PIQGMSPLAKFYYLFSLGYF 57

Query: 117 LSDLAMILWLYPALG--GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNL 174
           + DL  +L           E ++HH  ++  I L+ V    ++ +L++L  E++ PF++L
Sbjct: 58  IHDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHL 117

Query: 175 RWYLDVAGLKSSNIYICNGVALFLGWLV 202
           R  L+ AG K S +Y  N V   + + V
Sbjct: 118 RKLLNYAGRKKSLLYDVNFVLFAVVFFV 145

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 60  EWNNRGFSTFHAFIASTASLYLLLLSDLFSE-----DYYDELIINRTSSLSETVLGISIG 114
           ++N RG S  H  ++    LY+LL    F         Y + I+  TS+L +    I +G
Sbjct: 1   KFNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLG 60

Query: 115 YFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNL 174
           YFL DL ++L+ Y      E +LHH +++  I  +      ++ +L++L  E++ PF++L
Sbjct: 61  YFLHDLLVLLF-YEKRRKWEMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 175 RWYLDVAGLKSSNIYICNGVALFLGWLV 202
           R +L+  G K S   +   V   + + +
Sbjct: 120 RKFLNYLGKKKSCDVLF--VLFLVSFFL 145

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG4561	281	consensus Uncharacterized conserved protein, conta	99.98
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	99.95
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.95
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	99.94
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	97.39
KOG1607	318	consensus Protein transporter of the TRAM (translo	95.64

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.98  E-value=6.3e-35  Score=242.95  Aligned_cols=196  Identities=36%  Similarity=0.550  Sum_probs=164.2

Q ss_pred             hhhhhhccCCCCcchHHHHHHHHHHHHHHHHHHHh---HHhHHhhcccccCCCccccccee-eeehhHHHHHHHHHHHHH
Q 028562            5 LLSSMADNVSPSKQFYWLVSVFSGIIMCTIVYKLT---GIISVLCFKGYRKLSNEKKLEWN-NRGFSTFHAFIASTASLY   80 (207)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~v~~~s---~~~s~~~~k~y~~l~~~~k~~w~-~r~vS~vHA~v~~~~al~   80 (207)
                      +.|.+.++.++..+.+.+......+++++.+|...   +..++...++|+++++++|++|| +|+||++|++++.  +++
T Consensus        12 ~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y   89 (281)
T KOG4561|consen   12 LTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVSS--SLY   89 (281)
T ss_pred             ccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhhc--ccc
Confidence            35677889999999999999999999999999988   66665566899999999999999 9999999999988  888


Q ss_pred             HHHhcCCCC-ccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHhcCchhHHH
Q 028562           81 LLLLSDLFS-EDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYI  159 (207)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~~~~~l~HH~~~l~~~~~~l~~~~~~~~~  159 (207)
                      +++.++.+. |....+++....+......    .|||++|+..+..+++..+|.+|++||+++..........|.+++++
T Consensus        90 ~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~~g~y~~  165 (281)
T KOG4561|consen   90 FLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRGVGQYYA  165 (281)
T ss_pred             eeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecCccceee
Confidence            988777665 4344444444433332222    55999999755557778899999999998844445556678899999


Q ss_pred             HHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhccC
Q 028562          160 LMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCM  206 (207)
Q Consensus       160 ~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~Ri~  206 (207)
                      +.+|++|+||||+|+||+++++|+|+|++|++||++++++||++||+
T Consensus       166 ~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIl  212 (281)
T KOG4561|consen  166 GTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARIL  212 (281)
T ss_pred             eeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999985

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=99.95  E-value=4.6e-28  Score=193.82  Aligned_cols=146  Identities=34%  Similarity=0.579  Sum_probs=125.5

Q ss_pred             ceeeeehhHHHHHHHHHHHHHHHHhcCCCCccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccCC-hhHHHH
Q 028562           60 EWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALGG-LEYVLH  138 (207)
Q Consensus        60 ~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~~-~~~l~H  138 (207)
                      ||++|++|.+||++++.+|++++..+++..++. .++...++++..+...++++|||++|+.++...+++.+| +++++|
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H   79 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDW-PDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH   79 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhc-ccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            699999999999999999999999766322111 133445556777889999999999999999976544433 899999


Q ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHc-CC-CCChhHHHHHHHHHHHHhhhccC
Q 028562          139 HGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVA-GL-KSSNIYICNGVALFLGWLVMSCM  206 (207)
Q Consensus       139 H~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~-g~-~~s~~y~~n~~l~~~~Ff~~Ri~  206 (207)
                      |++++.++..+...+.+.+++..++++|+||||+|+||++++. |+ +++..+.+|+++++++|+++|++
T Consensus        80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~  149 (198)
T PF03798_consen   80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIV  149 (198)
T ss_pred             HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888999999999999999999999999999 77 68899999999999999999985

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=7.2e-28  Score=196.79  Aligned_cols=151  Identities=25%  Similarity=0.304  Sum_probs=135.4

Q ss_pred             CCCcccccceeeeehhHHHHHHHHHHHHHHHHhcCCCCccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccC
Q 028562           52 KLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG  131 (207)
Q Consensus        52 ~l~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~  131 (207)
                      .++..+|++|.|+.||++||++++.++..++..++.     +.+|++...+..+..+.++|+|||+||+++|..+.+...
T Consensus        37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~-----~~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~  111 (253)
T KOG4474|consen   37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDPE-----MVDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL  111 (253)
T ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCcc-----cccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            567777999999999999999999999999997653     345567778889999999999999999999997654445


Q ss_pred             ChhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCC-CChhHHHHHHHHHHHHhhhccCC
Q 028562          132 GLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLK-SSNIYICNGVALFLGWLVMSCMP  207 (207)
Q Consensus       132 ~~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~-~s~~y~~n~~l~~~~Ff~~Ri~p  207 (207)
                      .+++++||++++.++..++..+++..++.+.+++|+|+||+|+|.+++..|.+ +++.++++..+++.+||++|++|
T Consensus       112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~  188 (253)
T KOG4474|consen  112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIP  188 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcc
Confidence            68999999999999999999999888999999999999999999999999984 55679999999999999999988

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=99.94  E-value=5.2e-27  Score=189.86  Aligned_cols=146  Identities=30%  Similarity=0.357  Sum_probs=126.2

Q ss_pred             ccccceeeeehhHHHHHHHHHHHHHHHHh-cCCCCccccccccccccChhHHHHHHHHHHHHHHHHHHHHHhccccC--C
Q 028562           56 EKKLEWNNRGFSTFHAFIASTASLYLLLL-SDLFSEDYYDELIINRTSSLSETVLGISIGYFLSDLAMILWLYPALG--G  132 (207)
Q Consensus        56 ~~k~~w~~r~vS~vHA~v~~~~al~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~~~~~~--~  132 (207)
                      +|+.||++|++|.+||++++..+++.... +|..     .++...+.++..+...++++|||++|++++...++..+  +
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~   75 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPK-----SLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDF   75 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCc-----ccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Confidence            57899999999999999999988877552 1111     12345678999999999999999999999986554433  7


Q ss_pred             hhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhccC
Q 028562          133 LEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSCM  206 (207)
Q Consensus       133 ~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~Ri~  206 (207)
                      ++|++||++++.++..+...+....+....++.|+||||+|+||++++.|+|+++.+..|+.+++++|+++|++
T Consensus        76 ~~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~  149 (205)
T smart00724       76 KEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLI  149 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999888888888888888899999999999999999999999999999999999999999986

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=97.39  E-value=0.00011  Score=62.69  Aligned_cols=148  Identities=16%  Similarity=0.195  Sum_probs=93.9

Q ss_pred             CcccccceeeeehhHHHHHHHHHHHHHHHHhcCCCCcc--ccccc-cccccChhHHHHHHHHHHHHHHHHHHHHH--hcc
Q 028562           54 SNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED--YYDEL-IINRTSSLSETVLGISIGYFLSDLAMILW--LYP  128 (207)
Q Consensus        54 ~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~s~GYF~~D~~~~~~--~~~  128 (207)
                      ++++..+++...-+..--.++++.|+|++..+|.+..|  ...++ ..+..++.-...-.+-.||.+....+..+  ..+
T Consensus       150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilvLqlEkp  229 (395)
T COG5058         150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILVLQLEKP  229 (395)
T ss_pred             CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhheeeecch
Confidence            55555788888888888889999999998877765422  11121 22344555566666778888888544443  223


Q ss_pred             ccCChhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhc
Q 028562          129 ALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMS  204 (207)
Q Consensus       129 ~~~~~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~R  204 (207)
                      +..-.+++.||++.++-.......+..-...+....+.+|-|||.+...++-+|-  ...+.+-+ +++..|.-.|
T Consensus       230 rkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~--~l~~~iF~-iFv~~wIysR  302 (395)
T COG5058         230 RKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS--VLATFIFG-IFVFIWIYSR  302 (395)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc--hhHHHHHH-HHHHHHHHHH
Confidence            3334799999999887554443322222122234469999999999988777665  33333333 5666666666

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.1  Score=45.03  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=94.4

Q ss_pred             cccCCCcccccceeeeehhHHHHHHHHHHHHHHHHhcCCCCcc-ccccc-cccccChhHHHHHHHHHHHHHHHHHHHHHh
Q 028562           49 GYRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSED-YYDEL-IINRTSSLSETVLGISIGYFLSDLAMILWL  126 (207)
Q Consensus        49 ~y~~l~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~s~GYF~~D~~~~~~~  126 (207)
                      .++.-+++++....+..=..+-=.++.+.|++++..++-+.+. ...++ ......+.-...-.+-+||-..-+......
T Consensus        77 ~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d  156 (318)
T KOG1607|consen   77 RLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLD  156 (318)
T ss_pred             hcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            4444455555666666667777788888999998864433321 11111 112234555666677788888888777754


Q ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcchhhhHHHHHHHcCCCCChhHHHHHHHHHHHHhhhcc
Q 028562          127 YPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILMVLFTEITTPFVNLRWYLDVAGLKSSNIYICNGVALFLGWLVMSC  205 (207)
Q Consensus       127 ~~~~~~~~~l~HH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElStpFlnlRw~l~~~g~~~s~~y~~n~~l~~~~Ff~~Ri  205 (207)
                      .++..-.++++||+++++-...+...+..-.......+...|-++|-+..+++-.|.+  .+-...=.+++..|+..|+
T Consensus       157 ~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~RL  233 (318)
T KOG1607|consen  157 EKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTRL  233 (318)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHHH
Confidence            4433347899999988875444433222222223344589999999998777666554  2333344466777777774

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 29/195 (14%), Positives = 61/195 (31%), Gaps = 67/195 (34%)

Query: 2   VSLLLSSMADNVSPS--KQFYWLVSVFS----------GIIMCTIVYKLTGIISVLCFKG 49
           ++ ++ S  + + P+  ++ +  +SVF            +I   ++     ++     K 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413

Query: 50  YRKLSNEKKLEWNNRGFSTFHAFIASTASLYLLLLSDLFSE--------DYYDELIINRT 101
              L  +           +         S+YL L   L +E        D+Y+   I +T
Sbjct: 414 -YSLVEK----QPKESTISIP-------SIYLELKVKLENEYALHRSIVDHYN---IPKT 458

Query: 102 SSLSETVLGISIGYFLSDLAMILWLYPALGGLEYVLHHGLSMFSIFLALVSGKAQIYILM 161
               + +      YF S                ++ HH L              +    M
Sbjct: 459 FDSDDLIPPYLDQYFYS----------------HIGHH-LK-----------NIEHPERM 490

Query: 162 VLFTEITTPFVNLRW 176
            LF  +   F++ R+
Sbjct: 491 TLFRMV---FLDFRF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00