Citrus Sinensis ID: 028570

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFSF
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccEEEcccEEEccccccccccccEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAQAMASmaglrgsshSQAVLEgsfqlsgpnrlnapsnsrvavarpgftvraqqasnepeTSRRAMLGLVAAGVASGSFVQAVladatpikvgpppppsgglpgtlnsdeprdldlplkerffiqplspAQAAERAKASAKDILNVKELidkkawpyvqNDLRLRASYLRYDLntiisakpkdeKQSLKNLTGKLFQTignvsffsf
Flexible Loop (DISEMBL)
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVavarpgftvraqqasnepeTSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVkelidkkawpyvqnDLRLRASYLRYDLNTIisakpkdekqslknltgklfqtignvsffsf
Low Complexity Region (SEG)
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVgpppppsgglpgTLNSDEPRDLDLPLKERFFIQPLSPaqaaerakasaKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFSF
Disordered region (IsUnstruct)
*****************************************************************MLGLVAAGVASGSFVQAVLAD***********************************FFI****************KDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA***********LTGKLFQTIGNVSF***
Disordered Region (DISOPRED)
******SMAGLRGSSHSQAVLEG*******************************************LGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTI*************NLTGKLFQTIGNVSFFSF
Disordered Region (DISEMBL)
*****************QAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVR***********RRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPL************AKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFSF
Disordered Region (DISPRO)
****************SQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQA***PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q41932	230	Oxygen-evolving enhancer	yes	no	0.961	0.865	0.703	4e-77
P12301	232	Oxygen-evolving enhancer	N/A	no	0.966	0.862	0.714	2e-68
Q9XFT3	224	Oxygen-evolving enhancer	no	no	0.932	0.861	0.683	2e-68
Q41048	217	Oxygen-evolving enhancer	N/A	no	0.888	0.847	0.598	5e-49
O22591	231	Oxygen-evolving enhancer	N/A	no	0.927	0.831	0.570	8e-47
Q0D5P8	217	Oxygen-evolving enhancer	yes	no	0.898	0.857	0.606	2e-42
P83646	217	Oxygen-evolving enhancer	N/A	no	0.898	0.857	0.606	2e-42
Q41806	213	Oxygen-evolving enhancer	N/A	no	0.874	0.849	0.546	2e-42
Q9XI73	190	PsbQ-like protein 1, chlo	no	no	0.425	0.463	0.284	2e-07
Q9SGH4	220	PsbQ-like protein 2, chlo	no	no	0.748	0.704	0.265	5e-07

>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 170/206 (82%), Gaps = 7/206 (3%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
           MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + 
Sbjct: 1   MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55

Query: 59  PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
           PE+SRR+++GLVAAG+A GSFV+AV A+A PIKVG PP PSGGLPGT NSD+ RD  L L
Sbjct: 56  PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           K+RF+IQPLSP +AA RAK SAK+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
           AKPK+EKQSLK+LT KLFQTI N+ +
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDY 201

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.
Arabidopsis thaliana (taxid: 3702)

>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/203 (71%), Positives = 169/203 (83%), Gaps = 3/203 (1%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASMAGLRG+  SQAVLEGS Q+SG NRL+ P+ SRVAV + G  +RAQQ S E E
Sbjct: 1   MAQAMASMAGLRGA--SQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAE 58

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-K 119
           TSRRAMLG VAAG+ASGSFV+AVLA+A PI VGPPPP SGGLPGT NSD+ RD  LP  K
Sbjct: 59  TSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTK 118

Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
           +RF++QPL P +AA+RAK SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISA
Sbjct: 119 DRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISA 178

Query: 180 KPKDEKQSLKNLTGKLFQTIGNV 202
           KPKDEK+SL+ LT KLF +I N+
Sbjct: 179 KPKDEKKSLQELTSKLFSSIDNL 201

Spinacia oleracea (taxid: 3562)

>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3

 Score =  258 bits (660), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/202 (68%), Positives = 162/202 (80%), Gaps = 9/202 (4%)

Query: 5   MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSR 63
           MASM GL G+S   AVLEGS +++G +RLN   + RVAVA R    VRAQQ+    ETSR
Sbjct: 1   MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSR 53

Query: 64  RAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLP-GTLNSDEPRDLDLPLKERF 122
           R+++GLVAAG+A GSFVQAVLADA  IKVGPPP PSGGLP GT NSD+ RD  L LK+RF
Sbjct: 54  RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113

Query: 123 FIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182
           ++QPL P +AA RAK SAKDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK
Sbjct: 114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173

Query: 183 DEKQSLKNLTGKLFQTIGNVSF 204
           DEK+SLK+LT KLF TI N+ +
Sbjct: 174 DEKKSLKDLTTKLFDTIDNLDY 195

Required for photosystem II assembly/stability and photoautotrophic growth under low light conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1

 Score =  194 bits (492), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 122/204 (59%), Positives = 146/204 (71%), Gaps = 20/204 (9%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNE-P 59
           MAQAMASM GL     SQ VL        P+R  A S +R AV      VRA    +   
Sbjct: 1   MAQAMASMTGL-----SQGVL--------PSR-RADSRTRTAV----VIVRASAEGDAVA 42

Query: 60  ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
           +  RRA++GLVA G+  G+  QA  A+    IK+G PPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 43  QAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPL 102

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           KERF++QPL PA+AA R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I+
Sbjct: 103 KERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIA 162

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNV 202
           +KPK+EK+SLK LTGKLF TI ++
Sbjct: 163 SKPKEEKKSLKELTGKLFSTIDDL 186

Zea mays (taxid: 4577)

>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1

 Score =  186 bits (473), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 122/214 (57%), Positives = 150/214 (70%), Gaps = 22/214 (10%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRA-------- 52
           MAQAMAS            +LEGS QL   +  ++ S+     A   F VRA        
Sbjct: 1   MAQAMAS-----------GLLEGSLQLMSGSNRSSSSSRTRGPAGV-FIVRAQQQEQQQG 48

Query: 53  -QQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEP 111
              ++ +P+++RRAMLGLVA G+AS SFVQAVLA+A PIKVG PPPPSGGL GTLNSDE 
Sbjct: 49  MSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEA 108

Query: 112 RDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY 171
           RDL LPLKERF+IQPLSP +AA+R + SAK+I+ VK+ ID+K      NDLRLRASYLRY
Sbjct: 109 RDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRY 168

Query: 172 DLNTIISAKPKDEKQSLKNLT-GKLFQTIGNVSF 204
           DLNT+IS+KPK++KQSLK  + GKLFQ I N+ +
Sbjct: 169 DLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDY 202

Onobrychis viciifolia (taxid: 3882)

>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 150/206 (72%), Gaps = 20/206 (9%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
           MAQAMASM GL     SQ V     QL +GP R  A   SR+AV R        Q     
Sbjct: 1   MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43

Query: 60  ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
            T RRA+LGLVA G+A G+  QA LA+A  PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44  -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           +ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
           +KPKDEK+ LK+LTGKLF TI  +  
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDH 188

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/206 (60%), Positives = 150/206 (72%), Gaps = 20/206 (9%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
           MAQAMASM GL     SQ V     QL +GP R  A   SR+AV R        Q     
Sbjct: 1   MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43

Query: 60  ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
            T RRA+LGLVA G+A G+  QA LA+A  PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44  -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           +ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
           +KPKDEK+ LK+LTGKLF TI  +  
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDH 188

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1

 Score =  171 bits (434), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/203 (54%), Positives = 134/203 (66%), Gaps = 22/203 (10%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASM GL     SQ V   +          A S +R AV     +    + +  P 
Sbjct: 1   MAQAMASMTGL-----SQGVCPAA----------ADSRTRTAVVVVRASAEGDRCAGGPR 45

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPLK 119
             R      + A  +S    QAV A+    IK+G PPPPSGGLPGTLNSD+ RD DLPLK
Sbjct: 46  CDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLK 99

Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
           ERF++QPL PA+A  R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++
Sbjct: 100 ERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIAS 159

Query: 180 KPKDEKQSLKNLTGKLFQTIGNV 202
           KPK+EK+SLK LTGKLF TI ++
Sbjct: 160 KPKEEKKSLKELTGKLFSTIDDL 182

Zea mays (taxid: 4577)

>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 50/88 (56%)

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           +KE++F+  LSP  AA R K +A+ + +++E++D  +W YV   +RL+ +YL  DL   +
Sbjct: 75  IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNVSFF 205
           +  P+  +        +L + +  + F+
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDFY 162

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 39  SRVAVARPGFTVRAQQASNEPET---SRRAMLGLVAAGVASGSFVQ--AVLADATPIKVG 93
           SR      GF  R  +   EP++   +RR  LG   +   +G   +    LA      + 
Sbjct: 23  SRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSIGLTGILGENNVSLAQDNGFWID 82

Query: 94  PPPPPSGGLPGTLNS--DEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELID 151
            P P    +P   N+  +E       +K+  ++  +       R K +A D+L +++LI 
Sbjct: 83  GPLP----IPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIG 138

Query: 152 KKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQ 197
                YV+  LRL++++L YD + +ISA   ++KQ L +L  +LF 
Sbjct: 139 PDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLFD 184

Required for both formation and activity of the chloroplast NAD(P)H dehydrogenase (NDH) complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
118486390	234	unknown [Populus trichocarpa]	0.966	0.854	0.804	3e-80
224116338	234	hypothetical protein POPTRDRAFT_834003 [	0.966	0.854	0.795	6e-79
224078826	234	hypothetical protein POPTRDRAFT_831063 [	0.966	0.854	0.804	4e-76
15234637	230	oxygen-evolving enhancer protein 3-2 [Ar	0.961	0.865	0.703	2e-75
388507526	234	unknown [Lotus japonicus]	0.975	0.863	0.710	1e-74
388510242	232	unknown [Medicago truncatula]	0.961	0.857	0.716	8e-73
225469185	231	PREDICTED: oxygen-evolving enhancer prot	0.966	0.865	0.811	7e-72
351724301	234	uncharacterized protein LOC100306034 [Gl	0.966	0.854	0.756	8e-72
449454700	231	PREDICTED: oxygen-evolving enhancer prot	0.975	0.874	0.745	8e-72
351727615	232	uncharacterized protein LOC100499794 [Gl	0.951	0.849	0.747	8e-70

>gi|118486390|gb|ABK95035.1| unknown [Populus trichocarpa]

 Score =  303 bits (775), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 176/205 (85%), Gaps = 5/205 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRL-NAPSNS-RVAVARPGFTVRAQQ-ASN 57
           MAQAMASMAGLRG+S  QAVLEGS QLSG NRL   PSN+ RVAVA PG TV+AQQ  S 
Sbjct: 1   MAQAMASMAGLRGTS--QAVLEGSLQLSGSNRLLKVPSNTARVAVALPGLTVKAQQQVSA 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           EPETSRR MLGLVAAG+ASGSFVQAVLA A PIKVGPPP PSGGL GTLNSDE RDL LP
Sbjct: 59  EPETSRRGMLGLVAAGLASGSFVQAVLAAALPIKVGPPPAPSGGLTGTLNSDEARDLVLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LKERFF+QPL PA AA RAK SAK+I+ VK LIDKKAWPYVQNDLRL+ASYLRYDLNT+I
Sbjct: 119 LKERFFLQPLPPAAAAARAKESAKEIIGVKGLIDKKAWPYVQNDLRLKASYLRYDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNV 202
           SAK KDEK+SLK LTGKLF TIGN+
Sbjct: 179 SAKSKDEKKSLKELTGKLFDTIGNL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116338|ref|XP_002317273.1| hypothetical protein POPTRDRAFT_834003 [Populus trichocarpa] gi|222860338|gb|EEE97885.1| hypothetical protein POPTRDRAFT_834003 [Populus trichocarpa]

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 163/205 (79%), Positives = 175/205 (85%), Gaps = 5/205 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRL-NAPSNS-RVAVARPGFTVRAQQ-ASN 57
           MAQAMASMAGLRG+S  QAVLEGS QLSG NRL   PSN+ RVAVA PG TV+AQQ  S 
Sbjct: 1   MAQAMASMAGLRGTS--QAVLEGSLQLSGSNRLLKVPSNTARVAVALPGLTVKAQQQVSA 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           EPETSRR MLGLVAAG+ASGSFVQAVLA A PIKVGPPP PSGGL GTLNSDE RDL LP
Sbjct: 59  EPETSRRGMLGLVAAGLASGSFVQAVLAAALPIKVGPPPAPSGGLTGTLNSDEARDLVLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LKERFF+QPL PA AA RAK SAK+I+ VK LIDKKAWPYVQNDLRL++SYLRYDLNT+I
Sbjct: 119 LKERFFLQPLPPAAAAARAKESAKEIIGVKGLIDKKAWPYVQNDLRLKSSYLRYDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNV 202
           SAK KDEK+SLK LTGKLF TI N+
Sbjct: 179 SAKSKDEKKSLKELTGKLFDTISNL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078826|ref|XP_002305643.1| hypothetical protein POPTRDRAFT_831063 [Populus trichocarpa] gi|118486762|gb|ABK95216.1| unknown [Populus trichocarpa] gi|222848607|gb|EEE86154.1| hypothetical protein POPTRDRAFT_831063 [Populus trichocarpa]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 178/205 (86%), Gaps = 5/205 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNR-LNAPSN-SRVAVARPGFTVRA-QQASN 57
           MAQAMASMAGLRG+  SQAVLEGS QLSG NR LN PSN +RVAVARPG  VRA QQ S 
Sbjct: 1   MAQAMASMAGLRGT--SQAVLEGSLQLSGSNRLLNVPSNTTRVAVARPGLAVRAQQQVSG 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           E ETSRRAMLGLVAAG+ASGSFVQ VLADA PIK+GPPPPPSGGLPGTLNSDE RD DLP
Sbjct: 59  ELETSRRAMLGLVAAGLASGSFVQVVLADALPIKLGPPPPPSGGLPGTLNSDEARDFDLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LK+RFF+QPL PA+AA RAK SAKDIL VK LID+KAWPYVQNDLRL+A YLR+DLNT+I
Sbjct: 119 LKQRFFLQPLPPAEAAVRAKESAKDILGVKSLIDQKAWPYVQNDLRLKAGYLRFDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNV 202
           SAK KDEK+SLK LTGKLF TI N+
Sbjct: 179 SAKSKDEKKSLKELTGKLFDTISNL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234637|ref|NP_192427.1| oxygen-evolving enhancer protein 3-2 [Arabidopsis thaliana] gi|18206249|sp|Q41932.2|PSBQ2_ARATH RecName: Full=Oxygen-evolving enhancer protein 3-2, chloroplastic; Short=OEE3; AltName: Full=16 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=OEC 16 kDa subunit; Flags: Precursor gi|13926288|gb|AAK49613.1|AF372897_1 AT4g05180/C17L7_100 [Arabidopsis thaliana] gi|7267278|emb|CAB81060.1| Oxygen-evolving enhancer protein 3 precursor-like protein [Arabidopsis thaliana] gi|21593587|gb|AAM65554.1| Oxygen-evolving enhancer protein 3 precursor-like protein [Arabidopsis thaliana] gi|23308489|gb|AAN18214.1| At4g05180/C17L7_100 [Arabidopsis thaliana] gi|332657088|gb|AEE82488.1| oxygen-evolving enhancer protein 3-2 [Arabidopsis thaliana]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 145/206 (70%), Positives = 170/206 (82%), Gaps = 7/206 (3%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
           MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + 
Sbjct: 1   MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55

Query: 59  PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
           PE+SRR+++GLVAAG+A GSFV+AV A+A PIKVG PP PSGGLPGT NSD+ RD  L L
Sbjct: 56  PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115

Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
           K+RF+IQPLSP +AA RAK SAK+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175

Query: 179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
           AKPK+EKQSLK+LT KLFQTI N+ +
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDY 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507526|gb|AFK41829.1| unknown [Lotus japonicus]

 Score =  284 bits (727), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 173/207 (83%), Gaps = 5/207 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLN---APSNSRVAVARPGFTVRAQQASN 57
           MAQAMASMAGLRGSS  QAVLEGS QLSG  RLN   + S+S   V+    TVRA Q  +
Sbjct: 1   MAQAMASMAGLRGSS--QAVLEGSLQLSGSTRLNIHSSSSSSNSRVSSTRLTVRANQVPS 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           EP++SRRA++GLVAAG+A+GSFVQAVLA+A  IKVG PPP SGGLPGTLNSDE RDL+LP
Sbjct: 59  EPQSSRRAVMGLVAAGLATGSFVQAVLAEAKSIKVGGPPPLSGGLPGTLNSDEARDLELP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           L+ERFF+QPLSP +AA+RAK SAK+I+ VK+ ID+KAWPYVQNDLRLRASYLRYDLNT+I
Sbjct: 119 LEERFFLQPLSPTEAAQRAKESAKEIVAVKKFIDQKAWPYVQNDLRLRASYLRYDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNVSF 204
           S+KP D+KQSLK L+ KLFQ I N+ +
Sbjct: 179 SSKPTDQKQSLKELSAKLFQDISNLDY 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510242|gb|AFK43187.1| unknown [Medicago truncatula]

 Score =  278 bits (712), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 149/208 (71%), Positives = 169/208 (81%), Gaps = 9/208 (4%)

Query: 1   MAQAMASMAG-LRGSSHSQAVLEGSFQLSGPNRLNA--PSNSRVAVARPGFTV-RAQQAS 56
           MAQAMASMAG LRGSS SQAV+EGS QLSG NRLN    SNS   V R   TV RAQQ  
Sbjct: 1   MAQAMASMAGCLRGSS-SQAVMEGSLQLSGSNRLNMLHGSNSN-KVTRSSVTVVRAQQ-- 56

Query: 57  NEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDL 116
            + E+SRRA++GLVA G+ S SFVQAVLA+A PIKVG PP PSGGLPGTLNSDE RDL L
Sbjct: 57  -QQESSRRAVIGLVATGLVSSSFVQAVLAEAIPIKVGGPPAPSGGLPGTLNSDEARDLKL 115

Query: 117 PLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTI 176
           PLKERF++QPL+P +AA RAK SAK+I+  K+ ID+KAWPY+QNDLRLRA YLRYDLNTI
Sbjct: 116 PLKERFYLQPLTPTEAAARAKESAKEIVAAKKFIDQKAWPYLQNDLRLRAGYLRYDLNTI 175

Query: 177 ISAKPKDEKQSLKNLTGKLFQTIGNVSF 204
           ISAKPKD+K+SLK LTGKLFQ I N+ +
Sbjct: 176 ISAKPKDQKKSLKELTGKLFQDIDNLDY 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469185|ref|XP_002275624.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic [Vitis vinifera]

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 164/202 (81%), Positives = 179/202 (88%), Gaps = 2/202 (0%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASMAGLRGS  SQAVLEGS Q+SG  RL++ S+SRV VARPGF+VRAQQA  EPE
Sbjct: 1   MAQAMASMAGLRGS--SQAVLEGSLQISGSTRLSSGSSSRVGVARPGFSVRAQQAPVEPE 58

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKE 120
           TSRRA+LGLVAAG+ASGSFVQAVLA+A  IKVGPPPPPSGGLPGTLNSDE RDLDLPLK+
Sbjct: 59  TSRRAVLGLVAAGLASGSFVQAVLAEAKSIKVGPPPPPSGGLPGTLNSDEARDLDLPLKD 118

Query: 121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
           RFFIQPL PA AA RAK SAKDI+ VK LIDKKAWPYVQ DLRL+A YLRYDLNT+ISAK
Sbjct: 119 RFFIQPLPPAAAAVRAKESAKDIVGVKTLIDKKAWPYVQMDLRLKAEYLRYDLNTVISAK 178

Query: 181 PKDEKQSLKNLTGKLFQTIGNV 202
           PKDEK+SLK LTGKLF TI ++
Sbjct: 179 PKDEKKSLKELTGKLFSTISDL 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724301|ref|NP_001236541.1| uncharacterized protein LOC100306034 [Glycine max] gi|255627343|gb|ACU14016.1| unknown [Glycine max]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 174/205 (84%), Gaps = 5/205 (2%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRA--QQASN 57
           MAQAMASMAGLRGS  SQAVLEGS Q+SG  RLN  S SRVA A R GFTVR   QQ S 
Sbjct: 1   MAQAMASMAGLRGS--SQAVLEGSLQVSGSTRLNVGSGSRVASATRAGFTVRVQQQQVSG 58

Query: 58  EPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
           E ++SRRA+L LVAAG+A+GSFVQAVLAD   IKVGPPPPPSGGLPGTLNSDE RDL LP
Sbjct: 59  EVQSSRRAVLSLVAAGLATGSFVQAVLADTKSIKVGPPPPPSGGLPGTLNSDEARDLQLP 118

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           LK+RFF+QPLSP +AA+RAK SAK+I+ VK+LI+KKAWPYVQNDLRLRA YLR+DLNT+I
Sbjct: 119 LKDRFFLQPLSPTEAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLRFDLNTVI 178

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNV 202
           + KPKDEK+SLK LTGKLFQ I N+
Sbjct: 179 AGKPKDEKKSLKELTGKLFQDISNL 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454700|ref|XP_004145092.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Cucumis sativus] gi|449471473|ref|XP_004153319.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Cucumis sativus] gi|449488405|ref|XP_004158022.1| PREDICTED: oxygen-evolving enhancer protein 3-2, chloroplastic-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 152/204 (74%), Positives = 174/204 (85%), Gaps = 2/204 (0%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
           MAQAMASMAGL GS  SQAVLEGS Q+SG +RL+  S  R +V R G  ++AQQ   EPE
Sbjct: 1   MAQAMASMAGLCGS--SQAVLEGSLQISGSSRLSVASTIRPSVPRSGLIIKAQQVPVEPE 58

Query: 61  TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKE 120
           TSRRA+LGLVAAG+ASGSFVQAVLA+A PIKVGPPPPPSGGLPGTLNSDEPRDLDLPLK+
Sbjct: 59  TSRRAVLGLVAAGLASGSFVQAVLAEAKPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKD 118

Query: 121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
           RFF+QP SPA A  RAK SAKDI+NVK  I+KKAWP+V++DLRL+A YLRYDL TIISAK
Sbjct: 119 RFFLQPQSPAMAVARAKESAKDIINVKGQIEKKAWPFVRDDLRLKAEYLRYDLKTIISAK 178

Query: 181 PKDEKQSLKNLTGKLFQTIGNVSF 204
           PK+EKQ+LK+LTGKLFQ I N+ +
Sbjct: 179 PKEEKQALKDLTGKLFQDINNLDY 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727615|ref|NP_001236143.1| uncharacterized protein LOC100499794 [Glycine max] gi|255626655|gb|ACU13672.1| unknown [Glycine max]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 171/206 (83%), Gaps = 9/206 (4%)

Query: 1   MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVA-VARPGFTVRAQQAS--- 56
           MAQAMASM  LRGS  SQAVLEGS    G  RLN  S SRVA V R GFTVRAQQ     
Sbjct: 1   MAQAMASMTSLRGS--SQAVLEGSL---GSTRLNVGSGSRVASVTRAGFTVRAQQQQVNG 55

Query: 57  NEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDL 116
            E ++SRRA+L LVAAG+ +GSFVQAVLADA PIKVGPPPPPSGGLPGTLNSDEPRDL L
Sbjct: 56  GEVQSSRRAVLSLVAAGLTTGSFVQAVLADAKPIKVGPPPPPSGGLPGTLNSDEPRDLKL 115

Query: 117 PLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTI 176
           PLK+RFF+QPLSP  AA+RAK SAK+I+ VK+LI+KKAWPYVQNDLRLRA YLR+DLNT+
Sbjct: 116 PLKDRFFLQPLSPTDAAQRAKESAKEIVGVKKLIEKKAWPYVQNDLRLRAEYLRFDLNTV 175

Query: 177 ISAKPKDEKQSLKNLTGKLFQTIGNV 202
           I+AKPKDEK+SLK LTGKLFQ I N+
Sbjct: 176 IAAKPKDEKKSLKELTGKLFQDISNL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2115703	230	PSBQ-2 "photosystem II subunit	0.961	0.865	0.621	1.2e-58
TAIR|locus:2127393	224	PSBQA "photosystem II subunit	0.932	0.861	0.594	1.9e-51
UNIPROTKB|P83646	217	OsI_025465 "Oxygen-evolving en	0.874	0.834	0.532	3.5e-43
TAIR|locus:2035775	190	PnsL2 "Photosynthetic NDH subc	0.425	0.463	0.227	3.6e-05
TAIR|locus:2096707	220	PnsL3 "Photosynthetic NDH subc	0.265	0.25	0.381	0.00072

TAIR|locus:2115703 PSBQ-2 "photosystem II subunit Q-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 128/206 (62%), Positives = 152/206 (73%)

Query:     1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
             MAQA+ SMAGLRG+S  QAVLEGS Q++G NRLN    SRV+V   R G  +RAQQ  + 
Sbjct:     1 MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55

Query:    59 PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL 118
             PE+SRR+++GLVAAG+A GSFV+AV A+A PIKV            T NSD+ RD  L L
Sbjct:    56 PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115

Query:   119 KERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
             K+RF+IQPLSP           K+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct:   116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175

Query:   179 AKPKDEKQSLKNLTGKLFQTIGNVSF 204
             AKPK+EKQSLK+LT KLFQTI N+ +
Sbjct:   176 AKPKEEKQSLKDLTAKLFQTIDNLDY 201

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;RCA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2127393 PSBQA "photosystem II subunit QA" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 120/202 (59%), Positives = 143/202 (70%)

Query:     5 MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSR 63
             MASM GL G+S   AVLEGS +++G +RLN   + RVAVA R    VRAQQ+    ETSR
Sbjct:     1 MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSR 53

Query:    64 RAMLGLVAAGVASGSFVQAVLADATPIKVXXXXXXXXXX-XXTLNSDEPRDLDLPLKERF 122
             R+++GLVAAG+A GSFVQAVLADA  IKV             T NSD+ RD  L LK+RF
Sbjct:    54 RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113

Query:   123 FIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182
             ++QPL P           KDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK
Sbjct:   114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173

Query:   183 DEKQSLKNLTGKLFQTIGNVSF 204
             DEK+SLK+LT KLF TI N+ +
Sbjct:   174 DEKKSLKDLTTKLFDTIDNLDY 195

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|P83646 OsI_025465 "Oxygen-evolving enhancer protein 3, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 107/201 (53%), Positives = 133/201 (66%)

Query:     1 MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
             MAQAMASM GL     SQ V     QL +GP R  A   SR+AV      VRA  A+ + 
Sbjct:     1 MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAV------VRADAAAADV 42

Query:    60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVXXXXXXXXXXXXTLNSDEPRDLDLPL 118
             +T RRA+LGLVA G+A G+  QA LA+A  PIK+            TLNSD+ RD DLPL
Sbjct:    43 QTGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102

Query:   119 KERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
             +ERF++QPL P           +DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct:   103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162

Query:   179 AKPKDEKQSLKNLTGKLFQTI 199
             +KPKDEK+ LK+LTGKLF TI
Sbjct:   163 SKPKDEKKGLKDLTGKLFATI 183

GO:0009536 "plastid" evidence=IC

TAIR|locus:2035775 PnsL2 "Photosynthetic NDH subcomplex L 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 20/88 (22%), Positives = 44/88 (50%)

Query:   118 LKERFFIQPLSPXXXXXXXXXXXKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
             +KE++F+  LSP           + + +++E++D  +W YV   +RL+ +YL  DL   +
Sbjct:    75 IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query:   178 SAKPKDEKQSLKNLTGKLFQTIGNVSFF 205
             +  P+  +        +L + +  + F+
Sbjct:   135 NILPESRRNDYVQAANELVENMSELDFY 162

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0006098 "pentose-phosphate shunt" evidence=RCA

TAIR|locus:2096707 PnsL3 "Photosynthetic NDH subcomplex L 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00072, P = 0.00072
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query:   142 DILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLF 196
             D+L +++LI      YV+  LRL++++L YD + +ISA   ++KQ L +L  +LF
Sbjct:   129 DLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLF 183


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       184   0.00078  110 3  11 22  0.45    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.70u 0.11s 14.81t   Elapsed:  00:00:00
  Total cpu time:  14.70u 0.11s 14.81t   Elapsed:  00:00:00
  Start:  Sat May 11 02:04:16 2013   End:  Sat May 11 02:04:16 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009523 "photosystem II" evidence=IEA

GO:0009654 "oxygen evolving complex" evidence=IEA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IMP

GO:0009344 "nitrite reductase complex [NAD(P)H

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P83646	PSBQ_ORYSI	No assigned EC number	0.6067	0.8985	0.8571	N/A	no
O22591	PSBQ_ONOVI	No assigned EC number	0.5700	0.9275	0.8311	N/A	no
P12301	PSBQ_SPIOL	No assigned EC number	0.7142	0.9661	0.8620	N/A	no
Q0D5P8	PSBQ_ORYSJ	No assigned EC number	0.6067	0.8985	0.8571	yes	no
Q41932	PSBQ2_ARATH	No assigned EC number	0.7038	0.9613	0.8652	yes	no
Q41806	PSBQ2_MAIZE	No assigned EC number	0.5467	0.8743	0.8497	N/A	no
Q41048	PSBQ1_MAIZE	No assigned EC number	0.5980	0.8888	0.8479	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XI0110 SubName- Full=Putative uncharacterized protein; (234 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam05757	203	pfam05757, PsbQ, Oxygen evolving enhancer protein	1e-79
PLN02729	220	PLN02729, PLN02729, PSII-Q subunit	1e-13
PLN02956	185	PLN02956, PLN02956, PSII-Q subunit	3e-10
PLN02999	190	PLN02999, PLN02999, photosystem II oxygen-evolving	2e-09

>gnl|CDD|191366 pfam05757, PsbQ, Oxygen evolving enhancer protein 3 (PsbQ)

 Score =  236 bits (603), Expect = 1e-79
 Identities = 119/175 (68%), Positives = 137/175 (78%), Gaps = 1/175 (0%)

Query: 32  RLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPI 90
            L++ S SRVA  R G  VRA     EP+TSRRA+LG LVA G+A G+F QA  A A PI
Sbjct: 1   SLSSTSRSRVATRRSGLVVRASAEPAEPQTSRRAVLGGLVATGLAGGAFAQAAAAAAKPI 60

Query: 91  KVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELI 150
           KVG PPPPSGGLPGT NSDE RD DLPLKERF++QPLSP +AA RAK SAKDIL++KE I
Sbjct: 61  KVGLPPPPSGGLPGTDNSDEARDFDLPLKERFYLQPLSPEEAAARAKESAKDILDLKEFI 120

Query: 151 DKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFF 205
           DKKAWPYV+N LRL+A YLRYDLNT+ISAKPK+EK+SLK+L  KLF  I N+ F 
Sbjct: 121 DKKAWPYVRNYLRLKAGYLRYDLNTLISAKPKEEKKSLKDLANKLFDNIENLDFA 175

This family consists of the plant specific oxygen evolving enhancer protein 3 (PsbQ). Photosystem II (PSII)1 is a pigment-protein complex, which consists of at least 25 different protein subunits, at present denoted PsbA-Z according to the genes that encode them. PsbQ plays an important role in the lumenal oxygen-evolving activity of PSII from higher plants and green algae. Length = 203

>gnl|CDD|215388 PLN02729, PLN02729, PSII-Q subunit

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 17/196 (8%)

Query: 5   MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEP--ETS 62
           MA +A L G + +   L    +L    R      +R      GF  +  +   E   +T+
Sbjct: 1   MAHLANLNGLTET---LPAIPKLRNLQR------TRKRGKIIGFLCKKAENFQEDSFQTT 51

Query: 63  RRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNS--DEPRDLDLPLKE 120
           RR  LGL +  +   S     LA+     +  P P    +P   N   +E       LK+
Sbjct: 52  RRLALGLASIALIGNSGNGVSLAEDNGFWLDGPLP----VPSVDNKIVNEKTGTRSFLKK 107

Query: 121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK 180
             ++  +       R K  A D+L +++LI      YV+  LRL+++++ YD + +ISA 
Sbjct: 108 GIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVRKYLRLKSTFMYYDFDKLISAA 167

Query: 181 PKDEKQSLKNLTGKLF 196
           P D+KQ L +L  +LF
Sbjct: 168 PVDDKQPLTDLANRLF 183

Length = 220

>gnl|CDD|215515 PLN02956, PLN02956, PSII-Q subunit

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 122 FFIQPLSPAQAAERAKA----SAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           F ++  +P +  E A++     A+++L VK LI+ ++W   Q  LR  AS L+ DL  II
Sbjct: 71  FDLRLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAII 130

Query: 178 SAKPKDEKQSLKNLTGKLFQTI 199
            AKP  ++  L+ L   LF ++
Sbjct: 131 QAKPGKDRPQLRRLYSDLFNSV 152

Length = 185

>gnl|CDD|178577 PLN02999, PLN02999, photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 24/88 (27%), Positives = 50/88 (56%)

Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
           +KE++F+  LSP  AA R K +A+ + +++E++D  +W YV   +RL+ +YL  DL   +
Sbjct: 75  IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134

Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNVSFF 205
           +  P+  +        +L + +  + ++
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDYY 162

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
PLN02729	220	PSII-Q subunit	100.0
PF05757	202	PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); I	100.0
PLN02999	190	photosystem II oxygen-evolving enhancer 3 protein	100.0
PLN02956	185	PSII-Q subunit	99.97
TIGR03042	142	PS_II_psbQ_bact photosystem II protein PsbQ. This	99.86
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	88.21

>PLN02729 PSII-Q subunit

Probab=100.00  E-value=6.9e-63  Score=424.20  Aligned_cols=188  Identities=28%  Similarity=0.416  Sum_probs=176.7

Q ss_pred             hHHhhcccCCCcccccccccccccCCCcccCCCCCccccccceeEEeec-c-cCCCcchhhHHHHHHHHHHHhhhhhhhh
Q 028570            5 MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQ-Q-ASNEPETSRRAMLGLVAAGVASGSFVQA   82 (207)
Q Consensus         5 ma~ma~l~g~s~~~~~~~~~~~~~g~~r~~~~~~~~~~~~~~g~~vra~-~-~~~~~~~sRRa~lgl~aa~la~~~~~~~   82 (207)
                      |||+++|+|.+  +++ |.+++|+|.+|.      +.++...|+.|+.+ | |+++.|++||++|||+++|+++++|+++
T Consensus         1 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~------~~~~~~~g~l~~~~~~~~~~~~~~~rr~~lgl~a~~l~~~s~~~~   71 (220)
T PLN02729          1 MAHLANLNGLT--ETL-PAIPKLRNLQRT------RKRGKIIGFLCKKAENFQEDSFQTTRRLALGLASIALIGNSGNGV   71 (220)
T ss_pred             Ccchhcccccc--ccc-ccchhhhcchhh------hhhhhhhhHhhhhhhhcccchhhhhHHHHHHHHHHHHhcchhhhH
Confidence            89999999999  888 999999999887      89999999888777 3 6678999999999999999999999999


Q ss_pred             hhhcccCcccCCC-CCCCCCCCCCCCC--CCCCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHH
Q 028570           83 VLADATPIKVGPP-PPPSGGLPGTLNS--DEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQ  159 (207)
Q Consensus        83 ~~A~~~~i~~~p~-P~ps~~~~Gt~~~--~eardl~l~lkerf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~  159 (207)
                      ++||+++||++|| ||||     |+|+  ||..++|.|||||||+||++|+||++|||++|++|++||+|||+++|+|||
T Consensus        72 ~~A~~~~i~~~~P~P~ps-----t~n~~~~e~~gtRsfLKerfy~~~l~p~~aa~RiK~sA~dLl~vKdLId~~sW~yVq  146 (220)
T PLN02729         72 SLAEDNGFWLDGPLPVPS-----VDNKIVNEKTGTRSFLKKGIYMADIGTKGRMYRVKKYAFDLLALEDLIGPDTLNYVR  146 (220)
T ss_pred             HHhcccCceeCCCCCCCc-----cccccccccchHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHhhCcchHHHHH
Confidence            9999999999888 8888     4554  777777779999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          160 NDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       160 ~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      +|||+|++||||||++||+++|+++||+|++|+|+||++|++||||+
T Consensus       147 ~~LRLKAsyL~yDL~tvIsskP~~eKk~L~~LankLFdn~~eLD~Aa  193 (220)
T PLN02729        147 KYLRLKSTFMYYDFDKLISAAPVDDKQPLTDLANRLFDNFEKLEDAS  193 (220)
T ss_pred             HHHHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997

>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=7.6e-60  Score=403.60  Aligned_cols=172  Identities=63%  Similarity=0.973  Sum_probs=82.4

Q ss_pred             CCCCCccccccceeEEeecccCCCcchhhHHHHH-HHHHHHhhhhhhhhhhhcccCcccCCCCCCCCCCCCCCCCCCCCC
Q 028570           35 APSNSRVAVARPGFTVRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRD  113 (207)
Q Consensus        35 ~~~~~~~~~~~~g~~vra~~~~~~~~~sRRa~lg-l~aa~la~~~~~~~~~A~~~~i~~~p~P~ps~~~~Gt~~~~eard  113 (207)
                      +.++.++.+.+.+++|||++++++.+++||++|| |+++++++++++++++|+.+||++++||||+++++||+|+||+||
T Consensus         3 ~~~~~~~~~~r~~~~vra~~~~~~~~~~RRa~l~~l~a~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~g~~~~~~aRd   82 (202)
T PF05757_consen    3 STSSSRVASRRAGVVVRASQSPAQQQTSRRAVLGSLLAAALAGGSFAQAAAAAAWAIKVGLPPPPSGNLPGTNNSDGARD   82 (202)
T ss_dssp             ------------------------------------------------------S-EE----------------------
T ss_pred             CCcCCccccccccceeccccCcccccccHHHHHHHHHHHHHHhhhcccccccchhhhccCCCCCCCCCCCCccccccccc
Confidence            3455577778888999999988889999999999 999999999999999998999999999999999999999999999


Q ss_pred             CCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHH
Q 028570          114 LDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTG  193 (207)
Q Consensus       114 l~l~lkerf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~  193 (207)
                      ++||||+|||+|+++|+||++|||+++++|+.||+|||+++|+|||+|||+|++||||||++||++||+++||+|++|+|
T Consensus        83 ~~l~lk~rf~~~~l~~~ea~~Rik~sa~~L~~lk~lIdk~sW~~v~~~LRlka~~Lr~DL~~liss~p~~~kk~l~~La~  162 (202)
T PF05757_consen   83 FDLPLKERFYIQPLSPEEAAARIKESAKRLLSLKELIDKKSWPYVRNYLRLKAGYLRYDLNTLISSKPKDEKKALTDLAN  162 (202)
T ss_dssp             -----TT--EE----CCCHHHHHHHHHHHHCCCHHHHHTT-HHHHHHHHHCCCCCHHHHHHHHHCCS-HHHHHHHHHHHH
T ss_pred             cccchhhceecCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhcccccC
Q 028570          194 KLFQTIGNVSFFS  206 (207)
Q Consensus       194 kLF~~le~LD~Aa  206 (207)
                      +||++||+||||+
T Consensus       163 ~lf~~ie~LD~Aa  175 (202)
T PF05757_consen  163 KLFDNIEELDYAA  175 (202)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999996

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.

>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)

Probab=100.00  E-value=4.8e-42  Score=290.03  Aligned_cols=133  Identities=25%  Similarity=0.452  Sum_probs=118.0

Q ss_pred             EeecccCCCcchhhHHHHH-HHHHHHhhhhhhhhhhhcccCcccCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCC
Q 028570           50 VRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLS  128 (207)
Q Consensus        50 vra~~~~~~~~~sRRa~lg-l~aa~la~~~~~~~~~A~~~~i~~~p~P~ps~~~~Gt~~~~eardl~l~lkerf~~~~ls  128 (207)
                      |.++-+..+..++||.++. |++++++++++.               |+....+|||         |+|||||||+||++
T Consensus        30 ~~~~~~~~~~~~~rr~~~~~~l~~~~~~~~~~---------------~~~~~e~~Gt---------RsfLKerfy~p~ls   85 (190)
T PLN02999         30 VCCTGEPQQDIFTRRRTLTSLITFTVIGGATS---------------SALAQEKWGT---------RSFIKEKYFMPGLS   85 (190)
T ss_pred             hhcCCCchhhhHHHHHHHHHHHHHHHHhhccC---------------cHHHHhhhhh---------HHHHHHhccCCCCC
Confidence            4555444567789999888 999998755522               3444456666         47999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          129 PAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       129 ~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      |+||++|||++|++|++||+|||+++|+|||+|||++++||||||+++|+++|+++|++|++|+++|||||++|||||
T Consensus        86 peeAaaRiK~sA~dLl~vK~LId~~aW~YVq~~LRlkasyLryDL~tiIsskP~~eK~~L~~LankLFdnvt~LDyAA  163 (190)
T PLN02999         86 PEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDYYV  163 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999997

>PLN02956 PSII-Q subunit

Probab=99.97  E-value=3.5e-30  Score=218.31  Aligned_cols=86  Identities=30%  Similarity=0.522  Sum_probs=84.6

Q ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhh
Q 028570          121 RFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIG  200 (207)
Q Consensus       121 rf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le  200 (207)
                      |||+|+++||||++|||++|++|++||+||++++|+|||||||+|++||+|||++||++||+++||++++|+++||++|+
T Consensus        74 ~~~~p~~speeA~ar~k~~A~~l~~LK~LI~k~~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~  153 (185)
T PLN02956         74 RLTAPERTVEEAESGVRGHAENLLRVKALIESESWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVT  153 (185)
T ss_pred             eecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC
Q 028570          201 NVSFFS  206 (207)
Q Consensus       201 ~LD~Aa  206 (207)
                      +|||||
T Consensus       154 ~LD~AA  159 (185)
T PLN02956        154 KLDYAA  159 (185)
T ss_pred             HHHHHH
Confidence            999997

>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ

Probab=99.86  E-value=9.2e-22  Score=161.35  Aligned_cols=77  Identities=13%  Similarity=0.226  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          130 AQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       130 ~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      ++-+.+|.+.+++|.+|+.||++++|++|||+||+++|+||+||++||++||+++||++++|+++||+++++||+||
T Consensus        39 ~~~~~~i~~~~~r~~eLk~lI~kk~W~~vrn~irgp~g~Lr~dl~~l~~sl~p~dqk~a~~L~~~Lf~~L~~LD~AA  115 (142)
T TIGR03042        39 QRQAEGIEAAKDRLPELASLVAKEDWVFTRNLIHGPMGEVRREMTYLNQSLLPKDQKEALALAKELKDDLEKLDEAA  115 (142)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhcchHHHHHHHhccHHHHHHHHHHHHHccCHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45588999999999999999999999999999999999999999999999999999999999999999999999997

This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=88.21  E-value=0.82  Score=41.59  Aligned_cols=35  Identities=40%  Similarity=0.527  Sum_probs=21.5

Q ss_pred             eEEeecccCCCcchhhHHHHHHHHHHHhhhhhhhhh
Q 028570           48 FTVRAQQASNEPETSRRAMLGLVAAGVASGSFVQAV   83 (207)
Q Consensus        48 ~~vra~~~~~~~~~sRRa~lgl~aa~la~~~~~~~~   83 (207)
                      ++||+|.++. ...|||..|.+++..++.++-+..+
T Consensus        38 ~~~~~~~~~~-~~~srr~~l~~~~ga~a~~~~~~pa   72 (260)
T PLN00042         38 VVCRAQEEDN-SAVSRRAALALLAGAAAAGAKVSPA   72 (260)
T ss_pred             eeeecccccc-ccccHHHHHHHHHHHHHhhcccCch
Confidence            9999986543 4468888776665444434434333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
1nze_A	149	Crystal Structure Of Psbq Polypeptide Of Photosyste		2e-29

>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii From Higher Plants Length = 149

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 86  DATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL-KERFFIQPLSPXXXXXXXXXXXKDIL 144
           +A PI V            T NSD+ RD  LP  K+RF++QPL P            +IL
Sbjct: 1   EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL 60
Query: 145 NVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNV 202
           NVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I N+
Sbjct: 61  NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNL 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	4e-47
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	3e-10
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	4e-10

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Length = 149

 Score =  151 bits (381), Expect = 4e-47
 Identities = 82/120 (68%), Positives = 98/120 (81%), Gaps = 1/120 (0%)

Query: 86  DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-KERFFIQPLSPAQAAERAKASAKDIL 144
           +A PI VGPPPP SGGLPGT NSD+ RD  LP  K+RF++QPL P +AA+RAK SA +IL
Sbjct: 1   EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL 60

Query: 145 NVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSF 204
           NVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I N+  
Sbjct: 61  NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDH 120

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Length = 133

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 13/74 (17%), Positives = 26/74 (35%)

Query: 131 QAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
                A A       ++ LI  + W   Q  +      LR D+  + S+    ++   K 
Sbjct: 28  YVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKT 87

Query: 191 LTGKLFQTIGNVSF 204
           L  ++F  +  +  
Sbjct: 88  LAKEVFGHLERLDA 101

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Length = 130

 Score = 54.8 bits (131), Expect = 4e-10
 Identities = 9/74 (12%), Positives = 25/74 (33%)

Query: 131 QAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
                 + +A+   +++  + K  W   +N +R     +  D+  +       ++ +   
Sbjct: 25  DYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTA 84

Query: 191 LTGKLFQTIGNVSF 204
           LT  L      +  
Sbjct: 85  LTRALTDDFLKIDQ 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
1vyk_A	149	Oxygen-evolving enhancer protein 3; photosystem II	100.0
3zsu_A	130	TLL2057 protein, cyanoq; photosystem II assembly,	99.69
3ls0_A	133	SLL1638 protein, PSBQ; photosynthesis, four helix	99.68
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	88.43

>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A

Probab=100.00  E-value=2.3e-50  Score=330.35  Aligned_cols=121  Identities=68%  Similarity=1.098  Sum_probs=99.0

Q ss_pred             cccCcccCCCCCCCCCCCCCCCCCCCCCCCccc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhh
Q 028570           86 DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRL  164 (207)
Q Consensus        86 ~~~~i~~~p~P~ps~~~~Gt~~~~eardl~l~l-kerf~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRl  164 (207)
                      |+.+||++||||||||+|||+||||||||+||+ |||||+|+++|+||++|||++|++|++|++||++++|+|||||||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~   80 (149)
T 1vyk_A            1 EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL   80 (149)
T ss_dssp             CCSCEECCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence            357999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          165 RASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       165 ka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      |++||||||++||++||+++|+++++||++||++|++||+||
T Consensus        81 ~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AA  122 (149)
T 1vyk_A           81 RASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAA  122 (149)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999997

>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}

Probab=99.69  E-value=2.8e-17  Score=132.11  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          132 AAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       132 Aa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      =+.+|.+..++|.+|+.||++++|.++||+||++.|.||+||++|..+|++.+||++++|+++||++|++||+||
T Consensus        26 y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA  100 (130)
T 3zsu_A           26 YLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGA  100 (130)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999655555599999999999999999986

>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A

Probab=99.68  E-value=5.6e-17  Score=130.86  Aligned_cols=75  Identities=15%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHH-HHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          132 AAERAKASAKDILN-VKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       132 Aa~RIkesA~~L~~-lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      =+.+|.+..++|.+ |+.||++++|.++||+||++.|.||+||++|.++|++.+||++++|+++||++|++||+||
T Consensus        28 y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA  103 (133)
T 3ls0_A           28 YVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAA  103 (133)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999 9999999999999999999999999999999999654444599999999999999999986

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=88.43  E-value=1.1  Score=41.02  Aligned_cols=71  Identities=14%  Similarity=0.184  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHhhh---cChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhcccccC
Q 028570          136 AKASAKDILNVKELIDK---KAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNVSFFS  206 (207)
Q Consensus       136 IkesA~~L~~lk~lIdk---ksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~LD~Aa  206 (207)
                      ||+-=+.|..+-++|.-   |.|.-+.++++.-+..|..+=+.|+.+.|.++|++..+|.++|=..|++|..++
T Consensus        50 ~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~~~~  123 (369)
T 3rfy_A           50 IREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIV  123 (369)
T ss_dssp             HHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566677777765   999999999999999999999999999999999999999999999999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1nzea_	112	a.24.18.1 (A:) Oxygen-evolving enhancer protein 3,	4e-32

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 112

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  110 bits (277), Expect = 4e-32
 Identities = 57/83 (68%), Positives = 70/83 (84%)

Query: 122 FFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKP 181
           F++QPL P +AA+RAK SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKP
Sbjct: 1   FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKP 60

Query: 182 KDEKQSLKNLTGKLFQTIGNVSF 204
           KDEK+SL+ LT KLF +I N+  
Sbjct: 61  KDEKKSLQELTSKLFSSIDNLDH 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1nzea_	112	Oxygen-evolving enhancer protein 3, {Spinach (Spin	99.97

>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Oxygen-evolving enhancer protein 3,
family: Oxygen-evolving enhancer protein 3,
domain: Oxygen-evolving enhancer protein 3,
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.97  E-value=1.4e-32  Score=212.83  Aligned_cols=85  Identities=67%  Similarity=1.070  Sum_probs=84.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHhhhhhhhhHhHHHHHHhcCChhhhHHHHHHHHHHhhhhhc
Q 028570          122 FFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGN  201 (207)
Q Consensus       122 f~~~~ls~~eAa~RIkesA~~L~~lk~lIdkksW~yv~~~LRlka~~Lr~DL~tlIsskPkdqKk~l~~La~kLF~~le~  201 (207)
                      ||+|+++|+||+.||++++++|.+|++||++++|+||++|||+|++||||||++||+++|+++||++++|+++||++|++
T Consensus         1 f~~~~l~p~eaa~ri~~sa~~L~~l~~lI~k~~W~~v~~~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf~~le~   80 (112)
T d1nzea_           1 FYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDN   80 (112)
T ss_dssp             CCCCCCCTTTHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 028570          202 VSFFS  206 (207)
Q Consensus       202 LD~Aa  206 (207)
                      ||+||
T Consensus        81 LD~Aa   85 (112)
T d1nzea_          81 LDHAA   85 (112)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99996