Citrus Sinensis ID: 028572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHcEEEEccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccEEEEEEEEEEccccHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccccccccEEEcEEEEcccEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEEEccEEEEEEccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEEEcHHHHHccccEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccccEEEccccccccEEEEEcccEEcccEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MASRTVAKDIITLRGSAAIVSEFFGYAANSIlynrgvypeesfvkvkkyglpmlltedEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSitylpcldetcvfdvlaytdkdvavpftwiesdpklianpqmvklhsfdtkiHKVDTLVSykndewdeq
Flexible Loop (DISEMBL)
masrtvakdiitlrgsaaIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVlerwnfsietdnevvekgvsreksdkEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Low Complexity Region (SEG)
MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Disordered region (IsUnstruct)
******AKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVV************IMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSY********
Disordered Region (DISOPRED)
*************RGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNE*************EIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVS*********
Disordered Region (DISEMBL)
MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Disordered Region (DISPRO)
*******KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKND*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9LU93	209	Mitotic spindle checkpoin	yes	no	1.0	0.990	0.903	1e-108
Q9XFH3	208	Mitotic spindle checkpoin	N/A	no	1.0	0.995	0.859	1e-101
Q556Y9	203	Mitotic spindle assembly	yes	no	0.956	0.975	0.542	2e-59
Q9Z1B5	205	Mitotic spindle assembly	yes	no	0.971	0.980	0.497	2e-54
Q13257	205	Mitotic spindle assembly	yes	no	0.966	0.975	0.48	1e-51
O14417	203	Mitotic spindle checkpoin	yes	no	0.913	0.931	0.457	3e-49
P40958	196	Mitotic spindle checkpoin	yes	no	0.893	0.943	0.433	1e-37
D3Z8D9	211	Mitotic spindle assembly	no	no	0.855	0.838	0.261	1e-07
Q9D752	211	Mitotic spindle assembly	no	no	0.855	0.838	0.261	1e-07
Q4KWZ6	211	Mitotic spindle assembly	no	no	0.855	0.838	0.265	2e-07

>sp|Q9LU93|MAD2_ARATH Mitotic spindle checkpoint protein MAD2 OS=Arabidopsis thaliana GN=MAD2 PE=2 SV=1

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 197/208 (94%), Gaps = 1/208 (0%)

Query: 1   MASRTVA-KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDE 59
           MAS+T A KDIITL GSAAIVSEFF YAANSILYNR VYPEESFVKVKKYGLPMLL EDE
Sbjct: 1   MASKTAAAKDIITLHGSAAIVSEFFCYAANSILYNRAVYPEESFVKVKKYGLPMLLIEDE 60

Query: 60  GVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREK 119
            VKSF++NLT+Q+SEWLEAGKLQRVVLVIMSKAT EVLERWNF IETDNEVV+KGVSREK
Sbjct: 61  SVKSFMSNLTSQISEWLEAGKLQRVVLVIMSKATGEVLERWNFRIETDNEVVDKGVSREK 120

Query: 120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
           SDKEIMREIQAIMRQ+ASS+TYLPCLDETCVFDVLAYTD DVAVPFTWIESDPKLIANPQ
Sbjct: 121 SDKEIMREIQAIMRQVASSVTYLPCLDETCVFDVLAYTDTDVAVPFTWIESDPKLIANPQ 180

Query: 180 MVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           MVKLH FDTKIHKVDTLVSYKNDEWDE+
Sbjct: 181 MVKLHGFDTKIHKVDTLVSYKNDEWDEE 208

Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and delays the onset of anaphase when this process is not complete. It inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XFH3|MAD2_MAIZE Mitotic spindle checkpoint protein MAD2 OS=Zea mays GN=MAD2 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/207 (85%), Positives = 189/207 (91%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MASR+ +KDIITLRGSAAIVSEFFGYAANSILYNR VYPEESF KVKKYGL MLLT+DEG
Sbjct: 1   MASRSASKDIITLRGSAAIVSEFFGYAANSILYNRAVYPEESFSKVKKYGLTMLLTQDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VK+FIA+LT+QLSEWLEAGKLQR+VLVIMSKAT EVLERWNF+I TD EVVEKG  +EKS
Sbjct: 61  VKNFIASLTSQLSEWLEAGKLQRIVLVIMSKATSEVLERWNFNIVTDAEVVEKGAIKEKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIAS ITYLPCLDE CVFDVLAYTD DV  P TW+ESD KLI NPQM
Sbjct: 121 DKEIMREIQAIMRQIASCITYLPCLDEPCVFDVLAYTDTDVDAPGTWVESDAKLIDNPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYK DEWDE+
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKKDEWDEE 207

Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and delays the onset of anaphase when this process is not complete. It inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate.

Zea mays (taxid: 4577)

>sp|Q556Y9|MD2L1_DICDI Mitotic spindle assembly checkpoint protein MAD2A OS=Dictyostelium discoideum GN=mad2l1-1 PE=3 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 146/201 (72%), Gaps = 3/201 (1%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           M +   +K  I+L+GS  IV+EFF Y+ N+IL+ RG+YP ESF +V KYGLP+L+T D+ 
Sbjct: 1   MQAAVASKTNISLKGSTEIVTEFFSYSINTILFQRGLYPPESFTRVAKYGLPILVTNDQS 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKG-VSREK 119
           +K ++ N+  QLSEWL +G +Q++VLVI    TKEVLERW F + TD  + ++G   R+K
Sbjct: 61  LKDYLDNVLKQLSEWLLSGDVQKLVLVITDIVTKEVLERWVFDVTTD--IPKEGEAPRQK 118

Query: 120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
            +KEIM EIQAI+RQI +S+T+LP L   C FD+L YT KD+AVP  W ESDPK I N Q
Sbjct: 119 PEKEIMNEIQAIIRQITASVTFLPLLPNACTFDLLVYTSKDLAVPQKWEESDPKFITNSQ 178

Query: 180 MVKLHSFDTKIHKVDTLVSYK 200
            VKL SF T IHKV+++V+YK
Sbjct: 179 QVKLRSFTTTIHKVESMVAYK 199

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and inhibits the activity of the anaphase promoting complex until all chromosomes are aligned at the metaphase plate.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Z1B5|MD2L1_MOUSE Mitotic spindle assembly checkpoint protein MAD2A OS=Mus musculus GN=Mad2l1 PE=2 SV=2

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/201 (49%), Positives = 139/201 (69%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L T D  
Sbjct: 1   MAQQLAREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLTTTDPE 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL EWL    +Q++V+VI +  + EVLERW F IE D    E+GV REKS
Sbjct: 61  LIKYLNNVVEQLKEWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKEEGVRREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNCEE 180

Query: 181 VKLHSFDTKIHKVDTLVSYKN 201
           V+L SF T IHKV+++V+YK 
Sbjct: 181 VRLRSFTTTIHKVNSMVAYKT 201

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate.

Mus musculus (taxid: 10090)

>sp|Q13257|MD2L1_HUMAN Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens GN=MAD2L1 PE=1 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 137/200 (68%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct: 1   MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct: 61  LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180

Query: 181 VKLHSFDTKIHKVDTLVSYK 200
           V+L SF T IHKV+++V+YK
Sbjct: 181 VRLRSFTTTIHKVNSMVAYK 200

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. Required for the execution of the mitotic checkpoint which monitors the process of kinetochore-spindle attachment and inhibits the activity of the anaphase promoting complex by sequestering CDC20 until all chromosomes are aligned at the metaphase plate.

Homo sapiens (taxid: 9606)

>sp|O14417|MAD2_SCHPO Mitotic spindle checkpoint component mad2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mad2 PE=1 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 136/190 (71%), Gaps = 1/190 (0%)

Query: 12  TLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQ 71
           +L+GS+ +VSEFF YA NSIL+ RG+YP E F  V+KYGL ML++ DE VK++I  + +Q
Sbjct: 11  SLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQ 70

Query: 72  LSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIE-TDNEVVEKGVSREKSDKEIMREIQA 130
           L +W+ A K+Q+++LVI SK + E LERW F++E  D     + +  ++ +  + +EIQA
Sbjct: 71  LHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQA 130

Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
           ++RQI +++T+LP L+E C F+VL Y DKD  VP  W++SDP+++ + + V+L SF T +
Sbjct: 131 LIRQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSM 190

Query: 191 HKVDTLVSYK 200
           HK+D  V+Y+
Sbjct: 191 HKIDCQVAYR 200

Feedback control that prevents cells with incompletely assembled spindles from leaving mitosis. It interacts with the anaphase promoting complex/cyclosome (APC/C) thereby inhibiting APC/C-dependent proteolysis, a step required for exit from mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40958|MAD2_YEAST Mitotic spindle checkpoint component MAD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAD2 PE=1 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 119/196 (60%), Gaps = 11/196 (5%)

Query: 11  ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
           I+L+GS   V+EFF Y+ NSILY RGVYP E FV VKKY L +L T D+ +K +I  +  
Sbjct: 5   ISLKGSTRTVTEFFEYSINSILYQRGVYPAEDFVTVKKYDLTLLKTHDDELKDYIRKILL 64

Query: 71  QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSD----KEIMR 126
           Q+  WL  GK  ++VL I+ K   EV+ERW+F+++  +     G S  + D         
Sbjct: 65  QVHRWLLGGKCNQLVLCIVDKDEGEVVERWSFNVQHIS-----GNSNGQDDVVDLNTTQS 119

Query: 127 EIQAIMRQIASSITYLPCL--DETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLH 184
           +I+A++RQI SS+T+LP L  +    F VLAYTD D  VP  W +S+ K I + ++V+  
Sbjct: 120 QIRALIRQITSSVTFLPELTKEGGYTFTVLAYTDADAKVPLEWADSNSKEIPDGEVVQFK 179

Query: 185 SFDTKIHKVDTLVSYK 200
           +F T  HKV   VSYK
Sbjct: 180 TFSTNDHKVGAQVSYK 195

Central component of the spindle assembly checkpoint which is a feedback control that prevents cells with incompletely assembled spindles from leaving mitosis. Thought to be recruited to unattached kinetochores by MAD1. During checkpoint activity, MAD2 is relayed from the MAD1-MAD2 complex to the mitotic checkpoint complex (MCC). MCC and presumably the MAD2-CDC20 subcomplex inhibit the ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) by preventing its activation by CDC20.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|D3Z8D9|MD2L2_RAT Mitotic spindle assembly checkpoint protein MAD2B OS=Rattus norvegicus GN=Mad2l2 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 26/203 (12%)

Query: 17  AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
           A ++SEF   A + ILY R VYP   F K KKY +P+ ++    +  +I +    +   L
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIA 136
           E   +++VV+VI+ K  + V E++ F      E+ +  +    SD  ++  ++ ++R   
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVF------EITQPPLLSINSDS-LLSHVEQLLRAFI 127

Query: 137 SSITYL-PCLDET---CVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMV 181
             I+     LD     C F VL +T +          V   F WI +D +   + +P+++
Sbjct: 128 LKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLI 187

Query: 182 KLHSFDTKIHKVDTLV---SYKN 201
            L +  + I K+   V   ++KN
Sbjct: 188 PLKTMTSDILKMQLYVEERAHKN 210

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1. Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q9D752|MD2L2_MOUSE Mitotic spindle assembly checkpoint protein MAD2B OS=Mus musculus GN=Mad2l2 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 26/203 (12%)

Query: 17  AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
           A ++SEF   A + ILY R VYP   F K KKY +P+ ++    +  +I +    +   L
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIA 136
           E   +++VV+VI+ K  + V E++ F      E+ +  +    SD  ++  ++ ++R   
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVF------EITQPPLLSINSDS-LLSHVEQLLRAFI 127

Query: 137 SSITYL-PCLDET---CVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMV 181
             I+     LD     C F VL +T +          V   F WI +D +   + +P+++
Sbjct: 128 LKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLI 187

Query: 182 KLHSFDTKIHKVDTLV---SYKN 201
            L +  + I K+   V   ++KN
Sbjct: 188 PLKTMTSDILKMQLYVEERAHKN 210

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also regulate another aspect of cellular response to DNA damage through regulation of the JNK-mediated phosphorylation and activation of the transcriptional activator ELK1. Inhibits the FZR1- and probably CDC20-mediated activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Regulates TCF7L2-mediated gene transcription and may play a role in epithelial-mesenchymal transdifferentiation.

Mus musculus (taxid: 10090)

>sp|Q4KWZ6|MD2L2_CHICK Mitotic spindle assembly checkpoint protein MAD2B OS=Gallus gallus GN=MAD2L2 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 15/192 (7%)

Query: 17  AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
           A ++SEF   A + ILY R VYP   F K KKY +P+ ++    +  +I +    +   L
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75

Query: 77  EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIA 136
           E   +++VV+VI+ K    V ER+ F I     +     S     ++++R   A + +I+
Sbjct: 76  EKNDVEKVVVVILDKEHHPV-ERFVFEITQPPLLSISSESLLSHVEQLLR---AFILKIS 131

Query: 137 SSITYLPCLDETCVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMVKLHS 185
                L      C F VL +T +          V   F WI +D +   + +P+++ L +
Sbjct: 132 VCDAVLDNNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKT 191

Query: 186 FDTKIHKVDTLV 197
             + I K+   V
Sbjct: 192 MTSDILKMQLYV 203

Adapter protein able to interact with different proteins and involved in different biological processes. Mediates the interaction between the error-prone DNA polymerase zeta catalytic subunit REV3L and the inserter polymerase REV1, thereby mediating the second polymerase switching in translesion DNA synthesis. Translesion DNA synthesis releases the replication blockade of replicative polymerases, stalled in presence of DNA lesions. May also play a role in signal transduction in response to DNA damage. May regulate the activation of the anaphase promoting complex APC thereby regulating progression through the cell cycle. Through transcriptional regulation may play a role in epithelial-mesenchymal transdifferentiation.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
356567338	207	PREDICTED: mitotic spindle checkpoint pr	1.0	1.0	0.971	1e-114
356540181	207	PREDICTED: mitotic spindle checkpoint pr	1.0	1.0	0.966	1e-114
224100069	207	predicted protein [Populus trichocarpa]	1.0	1.0	0.961	1e-114
255547820	207	plant mitotic spindle assembly checkpoin	1.0	1.0	0.961	1e-113
224107667	209	predicted protein [Populus trichocarpa]	1.0	0.990	0.956	1e-112
357463101	207	Mitotic spindle checkpoint protein MAD2	1.0	1.0	0.942	1e-110
225425890	207	PREDICTED: mitotic spindle checkpoint pr	0.995	0.995	0.946	1e-110
449435035	207	PREDICTED: mitotic spindle checkpoint pr	1.0	1.0	0.898	1e-106
297814824	209	hypothetical protein ARALYDRAFT_904777 [	1.0	0.990	0.908	1e-106
15230956	209	mitotic spindle checkpoint protein MAD2	1.0	0.990	0.903	1e-106

>gi|356567338|ref|XP_003551878.1| PREDICTED: mitotic spindle checkpoint protein MAD2-like [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/207 (97%), Positives = 205/207 (99%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA+RTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG
Sbjct: 1   MAARTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VKSF+ANLTAQLSEWLEAGKLQRVVLVIMSKAT EVLERWNFSIETD+EVVEKGVSREKS
Sbjct: 61  VKSFLANLTAQLSEWLEAGKLQRVVLVIMSKATSEVLERWNFSIETDSEVVEKGVSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE CVFDVLAYTDKDVAVPFTW+ESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTDKDVAVPFTWVESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540181|ref|XP_003538568.1| PREDICTED: mitotic spindle checkpoint protein MAD2-like [Glycine max]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/207 (96%), Positives = 204/207 (98%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG
Sbjct: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VK+F+ANLTAQLSEWLEAGKLQRVVLVIMSKAT EVLERWNFSIETD EVVEKGVSREKS
Sbjct: 61  VKTFLANLTAQLSEWLEAGKLQRVVLVIMSKATSEVLERWNFSIETDCEVVEKGVSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE C+FDVLAYTDKDVAVPFTW+ESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDEPCIFDVLAYTDKDVAVPFTWVESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100069|ref|XP_002311730.1| predicted protein [Populus trichocarpa] gi|222851550|gb|EEE89097.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/207 (96%), Positives = 205/207 (99%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLT+DEG
Sbjct: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTQDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           V+SFI+NL AQLSEWLEAGKLQRVVLVIMSKAT EVLERWNFSIETD+EVVE+GVSREKS
Sbjct: 61  VRSFISNLNAQLSEWLEAGKLQRVVLVIMSKATNEVLERWNFSIETDSEVVEQGVSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE+CVFDVLAYTDKDVAVPFTWIESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDESCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547820|ref|XP_002514967.1| plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis] gi|223546018|gb|EEF47521.1| plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/207 (96%), Positives = 203/207 (98%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MAS+TVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESF KVKKYGLPMLLT+DEG
Sbjct: 1   MASKTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFAKVKKYGLPMLLTQDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VKSFIANL AQLSEWLEAGKLQRVVLVIMSKAT EVLERWNFSIETD+EVV+KGVSREKS
Sbjct: 61  VKSFIANLNAQLSEWLEAGKLQRVVLVIMSKATNEVLERWNFSIETDSEVVQKGVSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE CVFDVLAYTDKDVAVPFTWIESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDEACVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107667|ref|XP_002314554.1| predicted protein [Populus trichocarpa] gi|222863594|gb|EEF00725.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1049), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/209 (95%), Positives = 202/209 (96%), Gaps = 2/209 (0%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLT+DEG
Sbjct: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTQDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VKSFIANL AQLSEWLEAGKLQRVVLVIMSKAT EVLERWNFSIETD EVVEKG+SREKS
Sbjct: 61  VKSFIANLNAQLSEWLEAGKLQRVVLVIMSKATNEVLERWNFSIETDAEVVEKGLSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE CVFDVLAYTDKDV VPFTWIESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTDKDVTVPFTWIESDPKLIANPQM 180

Query: 181 VKLHSFDTK--IHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTK  IHKVDTLVSYKNDEWDEQ
Sbjct: 181 VKLHSFDTKAIIHKVDTLVSYKNDEWDEQ 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463101|ref|XP_003601832.1| Mitotic spindle checkpoint protein MAD2 [Medicago truncatula] gi|355490880|gb|AES72083.1| Mitotic spindle checkpoint protein MAD2 [Medicago truncatula]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/207 (94%), Positives = 199/207 (96%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MAS+TV KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG
Sbjct: 1   MASKTVTKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VKSFI NLTAQLSEWLEAGKLQR+VLVIMSK+T EVLERWNFSIETDNEVVEKG SREKS
Sbjct: 61  VKSFITNLTAQLSEWLEAGKLQRIVLVIMSKSTGEVLERWNFSIETDNEVVEKGESREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE CVFDVLAYT+ DV VPFTW ESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTNTDVEVPFTWTESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYKNDEWDEQ
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425890|ref|XP_002270903.1| PREDICTED: mitotic spindle checkpoint protein MAD2 isoform 1 [Vitis vinifera] gi|297738345|emb|CBI27546.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/206 (94%), Positives = 197/206 (95%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MASRT  KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESF KVKKYGLPMLLT+DEG
Sbjct: 1   MASRTATKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFGKVKKYGLPMLLTQDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VKSFIANLTAQLSEWLE GKLQRVVLVIMSKAT EVLERWNFSIETD EVVE GVSREKS
Sbjct: 61  VKSFIANLTAQLSEWLETGKLQRVVLVIMSKATNEVLERWNFSIETDGEVVENGVSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPC+DE CVFDVLAYTD DVAVPFTWIESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCIDEPCVFDVLAYTDTDVAVPFTWIESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDE 206
           VKLHSFDTKIHKVDTLVSYKNDEWDE
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDEWDE 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435035|ref|XP_004135301.1| PREDICTED: mitotic spindle checkpoint protein MAD2-like [Cucumis sativus] gi|449531017|ref|XP_004172484.1| PREDICTED: LOW QUALITY PROTEIN: mitotic spindle checkpoint protein MAD2-like [Cucumis sativus]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/207 (89%), Positives = 199/207 (96%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MAS+T  KDIITLRGSAAIVSEFFGYAANSILYNRG+YPEESFV+VKKYGLPMLLT+DEG
Sbjct: 1   MASKTATKDIITLRGSAAIVSEFFGYAANSILYNRGLYPEESFVRVKKYGLPMLLTQDEG 60

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           VK+FI+NLTAQLSEWLEAGKLQRVVLVIMSK+  EVLERWNF IETD EVVE+GVSREKS
Sbjct: 61  VKTFISNLTAQLSEWLEAGKLQRVVLVIMSKSNNEVLERWNFRIETDGEVVEQGVSREKS 120

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
           DKEIMREIQAIMRQIASSITYLPCLDE CVFDVLAYTDKD+AVPFTW+ESDPKLIANPQM
Sbjct: 121 DKEIMREIQAIMRQIASSITYLPCLDEPCVFDVLAYTDKDLAVPFTWMESDPKLIANPQM 180

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           VKLHSFDTKIHKVDTLVSYKND+ D++
Sbjct: 181 VKLHSFDTKIHKVDTLVSYKNDDDDDE 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297814824|ref|XP_002875295.1| hypothetical protein ARALYDRAFT_904777 [Arabidopsis lyrata subsp. lyrata] gi|297321133|gb|EFH51554.1| hypothetical protein ARALYDRAFT_904777 [Arabidopsis lyrata subsp. lyrata]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 198/208 (95%), Gaps = 1/208 (0%)

Query: 1   MASRTVA-KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDE 59
           MAS+TVA KDIITL GSAAIVSEFF YAANSILYNR VYPEESFVKVKKYGLPMLL EDE
Sbjct: 1   MASKTVAAKDIITLHGSAAIVSEFFCYAANSILYNRAVYPEESFVKVKKYGLPMLLIEDE 60

Query: 60  GVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREK 119
            VKSF++NLT+Q+SEWLEAGKLQRVVLVIMSKAT EVLERWNF IETDNEVV+KGVSREK
Sbjct: 61  SVKSFMSNLTSQISEWLEAGKLQRVVLVIMSKATGEVLERWNFRIETDNEVVDKGVSREK 120

Query: 120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
           SDKEIMREIQAIMRQ+ASS+TYLPCLDETCVFDVLAYTD DVAVPFTWIESDPKLIANPQ
Sbjct: 121 SDKEIMREIQAIMRQVASSVTYLPCLDETCVFDVLAYTDTDVAVPFTWIESDPKLIANPQ 180

Query: 180 MVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           MVKLH FDTKIHKVDTLVSYKNDEWDE+
Sbjct: 181 MVKLHGFDTKIHKVDTLVSYKNDEWDEE 208

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230956|ref|NP_189227.1| mitotic spindle checkpoint protein MAD2 [Arabidopsis thaliana] gi|12230292|sp|Q9LU93.1|MAD2_ARATH RecName: Full=Mitotic spindle checkpoint protein MAD2 gi|9279603|dbj|BAB01061.1| cell cycle checkpoint protein MAD2-like [Arabidopsis thaliana] gi|37202030|gb|AAQ89630.1| At3g25980 [Arabidopsis thaliana] gi|51968734|dbj|BAD43059.1| putative mitotic checkpoint protein [Arabidopsis thaliana] gi|51970868|dbj|BAD44126.1| putative mitotic checkpoint protein [Arabidopsis thaliana] gi|332643576|gb|AEE77097.1| mitotic spindle checkpoint protein MAD2 [Arabidopsis thaliana]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 197/208 (94%), Gaps = 1/208 (0%)

Query: 1   MASRTVA-KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDE 59
           MAS+T A KDIITL GSAAIVSEFF YAANSILYNR VYPEESFVKVKKYGLPMLL EDE
Sbjct: 1   MASKTAAAKDIITLHGSAAIVSEFFCYAANSILYNRAVYPEESFVKVKKYGLPMLLIEDE 60

Query: 60  GVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREK 119
            VKSF++NLT+Q+SEWLEAGKLQRVVLVIMSKAT EVLERWNF IETDNEVV+KGVSREK
Sbjct: 61  SVKSFMSNLTSQISEWLEAGKLQRVVLVIMSKATGEVLERWNFRIETDNEVVDKGVSREK 120

Query: 120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
           SDKEIMREIQAIMRQ+ASS+TYLPCLDETCVFDVLAYTD DVAVPFTWIESDPKLIANPQ
Sbjct: 121 SDKEIMREIQAIMRQVASSVTYLPCLDETCVFDVLAYTDTDVAVPFTWIESDPKLIANPQ 180

Query: 180 MVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
           MVKLH FDTKIHKVDTLVSYKNDEWDE+
Sbjct: 181 MVKLHGFDTKIHKVDTLVSYKNDEWDEE 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2092125	209	MAD2 "AT3G25980" [Arabidopsis	1.0	0.990	0.903	8.4e-97
DICTYBASE|DDB_G0273727	203	DDB_G0273727 "mitotic spindle	0.966	0.985	0.541	6.1e-55
DICTYBASE|DDB_G0273201	203	DDB_G0273201 "mitotic spindle	0.966	0.985	0.541	6.1e-55
UNIPROTKB|E1BUL1	206	MAD2L1 "Uncharacterized protei	0.937	0.941	0.515	4e-51
RGD|1310889	205	Mad2l1 "MAD2 mitotic arrest de	0.966	0.975	0.5	3.6e-50
MGI|MGI:1860374	205	Mad2l1 "MAD2 mitotic arrest de	0.966	0.975	0.5	5.8e-50
UNIPROTKB|F1S1S9	205	MAD2L1 "Uncharacterized protei	0.966	0.975	0.485	2.3e-48
UNIPROTKB|E1BL65	205	MAD2L1 "Uncharacterized protei	0.966	0.975	0.485	2.9e-48
UNIPROTKB|Q13257	205	MAD2L1 "Mitotic spindle assemb	0.966	0.975	0.48	7.7e-48
ASPGD|ASPL0000043446	225	mad2 [Emericella nidulans (tax	0.536	0.493	0.464	4.2e-47

TAIR|locus:2092125 MAD2 "AT3G25980" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 188/208 (90%), Positives = 197/208 (94%)

Query:     1 MASRTVA-KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDE 59
             MAS+T A KDIITL GSAAIVSEFF YAANSILYNR VYPEESFVKVKKYGLPMLL EDE
Sbjct:     1 MASKTAAAKDIITLHGSAAIVSEFFCYAANSILYNRAVYPEESFVKVKKYGLPMLLIEDE 60

Query:    60 GVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREK 119
              VKSF++NLT+Q+SEWLEAGKLQRVVLVIMSKAT EVLERWNF IETDNEVV+KGVSREK
Sbjct:    61 SVKSFMSNLTSQISEWLEAGKLQRVVLVIMSKATGEVLERWNFRIETDNEVVDKGVSREK 120

Query:   120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
             SDKEIMREIQAIMRQ+ASS+TYLPCLDETCVFDVLAYTD DVAVPFTWIESDPKLIANPQ
Sbjct:   121 SDKEIMREIQAIMRQVASSVTYLPCLDETCVFDVLAYTDTDVAVPFTWIESDPKLIANPQ 180

Query:   180 MVKLHSFDTKIHKVDTLVSYKNDEWDEQ 207
             MVKLH FDTKIHKVDTLVSYKNDEWDE+
Sbjct:   181 MVKLHGFDTKIHKVDTLVSYKNDEWDEE 208

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISS;IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0010369 "chromocenter" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0008283 "cell proliferation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

DICTYBASE|DDB_G0273727 DDB_G0273727 "mitotic spindle assembly checkpoint protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 111/205 (54%), Positives = 149/205 (72%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             M +   +K  I+L+GS  IV+EFF Y+ N+IL+ RG+YP ESF +V KYGLP+L+T D+ 
Sbjct:     1 MQAAVASKTNISLKGSTEIVTEFFSYSINTILFQRGLYPPESFTRVAKYGLPILVTNDQS 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVS-REK 119
             +K ++ N+  QLSEWL +G +Q++VLVI    TKEVLERW F + TD  + ++G + R+K
Sbjct:    61 LKDYLDNVLKQLSEWLLSGDVQKLVLVITDIVTKEVLERWVFDVTTD--IPKEGEAPRQK 118

Query:   120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
              +KEIM EIQAI+RQI +S+T+LP L   C FD+L YT KD+AVP  W ESDPK I N Q
Sbjct:   119 PEKEIMNEIQAIIRQITASVTFLPLLPNACTFDLLVYTSKDLAVPQKWEESDPKFITNSQ 178

Query:   180 MVKLHSFDTKIHKVDTLVSYK--ND 202
              VKL SF T IHKV+++V+YK  ND
Sbjct:   179 QVKLRSFTTTIHKVESMVAYKISND 203

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0000776 "kinetochore" evidence=IEA;ISS

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

DICTYBASE|DDB_G0273201 DDB_G0273201 "mitotic spindle assembly checkpoint protein 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 111/205 (54%), Positives = 149/205 (72%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             M +   +K  I+L+GS  IV+EFF Y+ N+IL+ RG+YP ESF +V KYGLP+L+T D+ 
Sbjct:     1 MQAAVASKTNISLKGSTEIVTEFFSYSINTILFQRGLYPPESFTRVAKYGLPILVTNDQS 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVS-REK 119
             +K ++ N+  QLSEWL +G +Q++VLVI    TKEVLERW F + TD  + ++G + R+K
Sbjct:    61 LKDYLDNVLKQLSEWLLSGDVQKLVLVITDIVTKEVLERWVFDVTTD--IPKEGEAPRQK 118

Query:   120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
              +KEIM EIQAI+RQI +S+T+LP L   C FD+L YT KD+AVP  W ESDPK I N Q
Sbjct:   119 PEKEIMNEIQAIIRQITASVTFLPLLPNACTFDLLVYTSKDLAVPQKWEESDPKFITNSQ 178

Query:   180 MVKLHSFDTKIHKVDTLVSYK--ND 202
              VKL SF T IHKV+++V+YK  ND
Sbjct:   179 QVKLRSFTTTIHKVESMVAYKISND 203

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISS

GO:0000776 "kinetochore" evidence=IEA;ISS

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

UNIPROTKB|E1BUL1 MAD2L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 100/194 (51%), Positives = 136/194 (70%)

Query:    11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
             ITLRGSA IV+EFF Y  NSILY RG+YP E+F +V+KYGL +L+T D  +K+++ N+  
Sbjct:    12 ITLRGSAEIVAEFFSYGINSILYQRGIYPPETFTRVQKYGLTLLVTTDPELKNYLNNVVE 71

Query:    71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
             Q+ EWL    +QR+V+VI S    EVLERW F IE D     +   REKS K I  EI++
Sbjct:    72 QMKEWLYKCTVQRLVVVISSIENNEVLERWQFDIECDKNARGESAPREKSQKAIQDEIRS 131

Query:   131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
             ++RQI +++T+LP L+  C FD+L YTDKD+ VP  W ES P+ IAN + V+L SF T I
Sbjct:   132 VIRQITATVTFLPLLETACAFDLLIYTDKDLVVPEKWEESGPQFIANSEEVRLRSFTTTI 191

Query:   191 HKVDTLVSYKNDEW 204
             HKV+++V+YK D +
Sbjct:   192 HKVNSMVAYKKDSF 205

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IEA

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=IEA

RGD|1310889 Mad2l1 "MAD2 mitotic arrest deficient-like 1 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 100/200 (50%), Positives = 139/200 (69%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             MA +      ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct:     1 MAQQLARDQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDPE 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
             +  ++ N+  QL EWL    +Q++V+VI +  + EVLERW F IE D    E+GV REKS
Sbjct:    61 LIKYLNNVVEQLKEWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKEEGVRREKS 120

Query:   121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
              K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct:   121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180

Query:   181 VKLHSFDTKIHKVDTLVSYK 200
             V+L SF T IHKV+++V+YK
Sbjct:   181 VRLRSFTTTIHKVNSMVAYK 200

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0000922 "spindle pole" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA;ISO

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISO

GO:0042177 "negative regulation of protein catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IEA;ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=IEA;ISO

MGI|MGI:1860374 Mad2l1 "MAD2 mitotic arrest deficient-like 1" [Mus musculus (taxid:10090)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 100/200 (50%), Positives = 139/200 (69%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L T D  
Sbjct:     1 MAQQLAREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLTTTDPE 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
             +  ++ N+  QL EWL    +Q++V+VI +  + EVLERW F IE D    E+GV REKS
Sbjct:    61 LIKYLNNVVEQLKEWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKEEGVRREKS 120

Query:   121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
              K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct:   121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNCEE 180

Query:   181 VKLHSFDTKIHKVDTLVSYK 200
             V+L SF T IHKV+++V+YK
Sbjct:   181 VRLRSFTTTIHKVNSMVAYK 200

GO:0000070 "mitotic sister chromatid segregation" evidence=IMP

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000776 "kinetochore" evidence=ISO;IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISA;IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0045841 "negative regulation of mitotic metaphase/anaphase transition" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=ISO;IMP

UNIPROTKB|F1S1S9 MAD2L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 97/200 (48%), Positives = 137/200 (68%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct:     1 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDPE 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
             +  ++ N+  QL EWL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct:    61 LIKYLNNVVEQLKEWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120

Query:   121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
              K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct:   121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180

Query:   181 VKLHSFDTKIHKVDTLVSYK 200
             V+L SF T IHKV+++V+YK
Sbjct:   181 VRLRSFTTTIHKVNSMVAYK 200

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=IEA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

UNIPROTKB|E1BL65 MAD2L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 97/200 (48%), Positives = 137/200 (68%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct:     1 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDPE 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
             +  ++ N+  QL EWL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct:    61 LIKYLNNVVDQLKEWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120

Query:   121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
              K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct:   121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180

Query:   181 VKLHSFDTKIHKVDTLVSYK 200
             V+L SF T IHKV+++V+YK
Sbjct:   181 VRLRSFTTTIHKVNSMVAYK 200

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=IEA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

UNIPROTKB|Q13257 MAD2L1 "Mitotic spindle assembly checkpoint protein MAD2A" [Homo sapiens (taxid:9606)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 96/200 (48%), Positives = 137/200 (68%)

Query:     1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct:     1 MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60

Query:    61 VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
             +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct:    61 LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120

Query:   121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
              K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct:   121 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180

Query:   181 VKLHSFDTKIHKVDTLVSYK 200
             V+L SF T IHKV+++V+YK
Sbjct:   181 VRLRSFTTTIHKVNSMVAYK 200

GO:0051301 "cell division" evidence=IEA

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005643 "nuclear pore" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0007093 "mitotic cell cycle checkpoint" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0042177 "negative regulation of protein catabolic process" evidence=IDA

GO:0060564 "negative regulation of mitotic anaphase-promoting complex activity" evidence=IDA

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

ASPGD|ASPL0000043446 mad2 [Emericella nidulans (taxid:162425)]

 Score = 273 (101.2 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 53/114 (46%), Positives = 80/114 (70%)

Query:    11 ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
             ++++GS+ +V+EFF Y+ NSIL+ RGVYP E F  VKKYGL ML+T D+ VK++I  + +
Sbjct:    15 LSIKGSSKLVAEFFEYSINSILFQRGVYPPEDFTTVKKYGLNMLVTADDQVKAYIKKIMS 74

Query:    71 QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS-DKE 123
             QL++W+  GK+ ++V+VI  K T E +ERW F ++   +  +K  S  KS DKE
Sbjct:    75 QLNKWMLGGKISKLVVVITDKETGEHVERWQFDVQIFGK--QKSQSTRKSGDKE 126

GO:0005643 "nuclear pore" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0060565 "inhibition of mitotic anaphase-promoting complex activity" evidence=IEA

GO:0051312 "chromosome decondensation" evidence=IEA

GO:0044774 "mitotic DNA integrity checkpoint" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0000776 "kinetochore" evidence=IDA

GO:0007067 "mitosis" evidence=IEA

GO:0010997 "anaphase-promoting complex binding" evidence=IEA

GO:0033597 "mitotic checkpoint complex" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LU93	MAD2_ARATH	No assigned EC number	0.9038	1.0	0.9904	yes	no
Q13257	MD2L1_HUMAN	No assigned EC number	0.48	0.9661	0.9756	yes	no
P40958	MAD2_YEAST	No assigned EC number	0.4336	0.8937	0.9438	yes	no
Q9XFH3	MAD2_MAIZE	No assigned EC number	0.8599	1.0	0.9951	N/A	no
Q9Z1B5	MD2L1_MOUSE	No assigned EC number	0.4975	0.9710	0.9804	yes	no
Q556Y9	MD2L1_DICDI	No assigned EC number	0.5422	0.9565	0.9753	yes	no
O14417	MAD2_SCHPO	No assigned EC number	0.4578	0.9130	0.9310	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VIII2373	hypothetical protein (207 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.01820024	hypothetical protein (542 aa)					•	•			0.496
	gw1.I.2892.1	thymidylate kinase (EC-2.7.4.9) (210 aa)				•					0.463
	estExt_fgenesh4_pm.C_LG_XII0260	hypothetical protein (576 aa)				•	•	•	•		0.454
	CPC901	condensin complex components subunit (1256 aa)				•					0.402
	estExt_Genewise1_v1.C_LG_IX3930	proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (265 aa)				•					0.401
	estExt_Genewise1_v1.C_LG_I1046	proliferating cell nuclear antigen (PCNA); This protein is an auxiliary protein of DNA polymera [...] (268 aa)				•					0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
pfam02301	186	pfam02301, HORMA, HORMA domain	3e-59

>gnl|CDD|216966 pfam02301, HORMA, HORMA domain

 Score =  183 bits (467), Expect = 3e-59
 Identities = 75/190 (39%), Positives = 104/190 (54%), Gaps = 14/190 (7%)

Query: 12  TLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQ 71
           TL+ S  +V EF   A NSILY RG+YPEESF   KKY LP+L++ED  +  ++      
Sbjct: 1   TLKQSLELVKEFLEVAINSILYLRGIYPEESFEDRKKYNLPVLVSEDPQLIDYLEK---G 57

Query: 72  LSEWLEAGKLQRVVLVIMSK---ATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREI 128
           + + LE G L+++VLVI         EVLER+ F               EK++ E  +EI
Sbjct: 58  VFDALEKGYLKKLVLVIYDDKDPEKNEVLERYQFDFSYF-PSGGNSSDSEKTEDETRQEI 116

Query: 129 QAIMRQIASSITYLPCL--DETCVFDVLAYTDKDVAVP-FTWIES--DPKLIAN--PQMV 181
           +A++RQ+ + + +LP L  + T  F +L YT  D   P F W +S  D KLI N  P+ V
Sbjct: 117 RALIRQLIALVQFLPPLPEERTLTFKLLYYTPPDYEPPGFKWADSDSDVKLIENSEPEEV 176

Query: 182 KLHSFDTKIH 191
            L SF T  H
Sbjct: 177 SLGSFSTGHH 186

The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins. MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG3285	203	consensus Spindle assembly checkpoint protein [Cel	100.0
KOG3186	202	consensus Mitotic spindle checkpoint protein [Cell	100.0
PF02301	208	HORMA: HORMA domain; InterPro: IPR003511 The HORMA	100.0
KOG4652	324	consensus HORMA domain [Chromatin structure and dy	99.37
PF07855	163	DUF1649: Protein of unknown function (DUF1649); In	98.47
PF10033	233	ATG13: Autophagy-related protein 13; InterPro: IPR	95.1
KOG4493	219	consensus Uncharacterized conserved protein [Funct	91.56
PF06581	264	p31comet: Mad1 and Cdc20-bound-Mad2 binding; Inter	80.16

>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=100.00  E-value=9.8e-74  Score=465.77  Aligned_cols=201  Identities=58%  Similarity=0.945  Sum_probs=192.4

Q ss_pred             cccccccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccc
Q 028572            3 SRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQ   82 (207)
Q Consensus         3 ~~~~~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~   82 (207)
                      ++.++++.||||||+++|+|||+|+||+|||||||||+|+|.++||||++++++.+++|+.||++++.|+++||.+|+++
T Consensus         2 ~~~~~~~~isLkGSa~iV~EFf~y~iNSILyQRgiYPaEdF~~vkKYgLtllvs~D~elk~f~~~ilsQ~~~WL~~~kiq   81 (203)
T KOG3285|consen    2 TAVATKNCISLKGSAQIVSEFFEYGINSILYQRGIYPAEDFVRVKKYGLTLLVSHDEELKTFIRNILSQVHEWLSKGKIQ   81 (203)
T ss_pred             ccccccceeEeechHHHHHHHHHhhhhHHHHhccCCcHHHhhHHHhcCceEEEecCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCcceeEEEeeeccccccccccc-cCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCCC
Q 028572           83 RVVLVIMSKATKEVLERWNFSIETDNEVVEKG-VSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDV  161 (207)
Q Consensus        83 kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~-~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~~  161 (207)
                      ||+|||.++.++|++|||.||++....+.+.+ ....++++.+|+||||+||||+++++|||.|++.|||+|++||+.|.
T Consensus        82 klvlvI~~~~tgEvlErWqFnie~~~~~~d~~na~~~k~~~~iq~EIraviRQItasVtfLP~Le~~ctFdvLiyTdkD~  161 (203)
T KOG3285|consen   82 KLVLVITSKHTGEVLERWQFNIETENTASDGQNATRVKDLKRIQNEIRAVIRQITASVTFLPLLEEICTFDVLIYTDKDT  161 (203)
T ss_pred             eEEEEEEecccccchhheeeeeeeeccccCcccccchhHHHHHHHHHHHHHHHHhhheeecccccceeEEEEEEEeCCCc
Confidence            99999999999999999999999988776554 45668899999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCcccccCCceeeeeeeecCceeeeeEEEEecCc
Q 028572          162 AVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDE  203 (207)
Q Consensus       162 ~~p~~Wi~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y~~~~  203 (207)
                      .+|..|++|+|+.|+||+.|+||||||++|||++.|+||.+.
T Consensus       162 ~vP~~W~eS~~~~I~n~e~VqlrsFsT~~HKVdt~V~YK~~~  203 (203)
T KOG3285|consen  162 EVPEKWDESGPKLIQNPEAVQLRSFSTSIHKVDTQVSYKMDT  203 (203)
T ss_pred             cCCcchhcCCCeEecChhhEEEeeccccceeecceEEeccCC
Confidence            999999999999999999999999999999999999999863

>KOG3186 consensus Mitotic spindle checkpoint protein [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7.7e-44  Score=289.35  Aligned_cols=182  Identities=23%  Similarity=0.356  Sum_probs=161.6

Q ss_pred             hHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEEEEeCCCc
Q 028572           15 GSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATK   94 (207)
Q Consensus        15 ~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lvI~~~~~~   94 (207)
                      ..++.++||+|+++|+|||.|++||.++|.++|+||.|||+||||.||+||.++|++++++|++|.|++++|+|+++++.
T Consensus         5 ~~ad~~~e~meV~Vh~ILYvR~~YP~~iF~k~rkYN~pv~~S~hP~Ln~Yi~~vl~s~~elL~~~~v~~v~l~i~~KE~r   84 (202)
T KOG3186|consen    5 ENADGWSEKMEVSVHCILYVRRLYPQDIFIKARKYNTPVWQSRHPILNEYIEEVLQSCIELLQTGSVHQVALSIINKEQR   84 (202)
T ss_pred             ecchHHHHHHHHHHHhheeecccccHHHHHHHHhcCCceeeecCchHHHHHHHHHHHHHHHHhcCCeeEEEEEEEccccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             ceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCC-ceEEEEEEecCCCC---------CC
Q 028572           95 EVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDET-CVFDVLAYTDKDVA---------VP  164 (207)
Q Consensus        95 e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~-ctF~vlv~t~~~~~---------~p  164 (207)
                       .+|||+|.++..+...+...   .-+.++++.+||+|.||+.+..-||.+|++ |||+|++||++.+.         .|
T Consensus        85 -~~E~yvf~~~s~p~~~~~~d---~~l~~~eq~mRa~i~kis~~~n~lp~~p~G~Ctftv~vht~~~a~r~~~~~~~~~~  160 (202)
T KOG3186|consen   85 -EEERYVFSTDSIPIIPDFLD---EFLDAYEQYMRASIIKISNITNGLPLIPQGICTFTVRVHTKDGAPRPKQWEEWFLP  160 (202)
T ss_pred             -hhhheEeeccCCCcCchhHH---HHHHHHHHHHHHHHHHHHHhhcCCCCCCCceeEEEEEEEeccccccCcchHHhhcC
Confidence             89999999998776433211   135678999999999999999999999988 99999999998754         35


Q ss_pred             CccccCCcc--cccCCceeeeeeeecCceeeeeEEEEe
Q 028572          165 FTWIESDPK--LIANPQMVKLHSFDTKIHKVDTLVSYK  200 (207)
Q Consensus       165 ~~Wi~sd~~--~i~n~~~v~lrsfsT~~h~v~~~V~y~  200 (207)
                      +||+-++..  ...+.-.+|||.++.+++||+.+|+-+
T Consensus       161 FPw~~~~~~~~q~~gv~liPl~~vd~~~lkm~i~ve~~  198 (202)
T KOG3186|consen  161 FPWARETDATRQFKGVILIPLRNVDIGPLKMEIWVEKY  198 (202)
T ss_pred             CchhhcchhhhhccCcEEEeeeecccCceEEEEEEEee
Confidence            688866644  456678999999999999999999754

>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins

Probab=100.00  E-value=4e-33  Score=233.43  Aligned_cols=177  Identities=31%  Similarity=0.446  Sum_probs=138.9

Q ss_pred             ehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCcc------ccccCHhHHHHHHHHHHHHHHHHHcCccceEE
Q 028572           12 TLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPM------LLTEDEGVKSFIANLTAQLSEWLEAGKLQRVV   85 (207)
Q Consensus        12 tl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v------~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~   85 (207)
                      |.++|+.++++||++|||+|||+||+||++.|++++.||+.+      +.++||.|++||++   ++.++|.+|.|++|+
T Consensus         1 t~~qS~~~v~~~L~~~is~Ily~R~lyP~~~F~~~~~~~~~~k~l~~~~~~~~~~l~~~i~~---~v~dai~k~~L~~v~   77 (208)
T PF02301_consen    1 TEQQSLELVKEFLEVAISQILYLRGLYPEDCFEDRRFYGLKLKVLVPNYSSRAPQLIDYIEK---GVFDAIEKGYLKKVV   77 (208)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHTTSS-GGGEEEEEETTEEE-----TEEE--HHHHHHHHH---HHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccCCHHHCcEEEecCccccccccccCCCcHHHHHHHHh---hHHHHHhhCcceEEE
Confidence            678999999999999999999999999999999999998888      79999999999988   999999999999999


Q ss_pred             EEEEeC---CCcceeEEEeeecccccccccccc-------------CCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCC-
Q 028572           86 LVIMSK---ATKEVLERWNFSIETDNEVVEKGV-------------SREKSDKEIMREIQAIMRQIASSITYLPCLDET-  148 (207)
Q Consensus        86 lvI~~~---~~~e~lEr~~Fdi~~~~~~~~~~~-------------~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~-  148 (207)
                      ++|++.   ++++++|||+|++++.+...+...             ....+..++++++|++|++|..+.+.||+||++ 
T Consensus        78 l~I~~~d~~~~~~~lE~y~F~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~L~~LP~~~  157 (208)
T PF02301_consen   78 LVIYDDDPPKSNEVLERYTFSFSYFPDGGPMSPEGSSISISNNTSEIDPITLDEVQEQLRALLRKLISSTQSLPPLPDER  157 (208)
T ss_dssp             EEEE----ETTTCEEEEEEEEEEE-TTGGGTSSC----------HHHCSSCHHHHHHHHHHHHHHHHHHHCTSSS--TTS
T ss_pred             EEEEecccCCCCceeEEEEEEEEecCCCCcccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHhccCCCccCCc
Confidence            999964   456899999999999765432110             013578899999999999999999999999876 


Q ss_pred             -ceEEEEEEec--CCCCCCC-ccccC--Ccc--cccCCceeeeeeeecCce
Q 028572          149 -CVFDVLAYTD--KDVAVPF-TWIES--DPK--LIANPQMVKLHSFDTKIH  191 (207)
Q Consensus       149 -ctF~vlv~t~--~~~~~p~-~Wi~s--d~~--~i~n~~~v~lrsfsT~~h  191 (207)
                       ++|+|.++.+  ++...|. .|.+.  ...  .-.+++.|++++++|+.|
T Consensus       158 ~~~~~l~~~~~tp~dy~pp~f~~~~~~~~~~~~~~~~~~~~~vg~v~t~~H  208 (208)
T PF02301_consen  158 TLTFKLLYYDDTPEDYEPPGFEAAEEATSFPLIFDEEPERVSVGSVSTGHH  208 (208)
T ss_dssp             SEEEEEEEEES-ETTSCSST-TEEES--STEEESSCSEEEEEEEEEEESSE
T ss_pred             eEEEEEEEEeCCCccccCCCCCCcccccccccccccceEEEEEeeeeCCCC
Confidence             6667777763  2333332 45544  222  224568999999999998

Hop1 is a meiosis-specific protein, Rev7 is required for DNA damage induced mutagenesis, and MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity [, ].; GO: 0007067 mitosis; PDB: 3ABD_B 3ABE_C 4AEZ_H 2V64_A 2VFX_A 1GO4_D 2QYF_C 3GMH_B 1KLQ_A 1S2H_A ....

>KOG4652 consensus HORMA domain [Chromatin structure and dynamics]

Probab=99.37  E-value=4.5e-12  Score=112.34  Aligned_cols=186  Identities=22%  Similarity=0.305  Sum_probs=138.5

Q ss_pred             ehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcC--Ccccc-ccCHhHHH-HHHHHHHHHHHHHHcCccceEEEE
Q 028572           12 TLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYG--LPMLL-TEDEGVKS-FIANLTAQLSEWLEAGKLQRVVLV   87 (207)
Q Consensus        12 tl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~--l~v~~-sr~p~l~~-YI~~~l~~v~~~L~~g~v~kl~lv   87 (207)
                      .-++|..++++.|.+|+-.|||.|||.|.+.|..+.-++  +-+-. .+.|.=.. -|..++..+...+..|.++++.++
T Consensus         8 ~e~~Sl~f~~rll~~ais~Ilr~Rgi~pe~yf~~~~v~~~~l~~~~~~~~~a~~~~li~~l~kg~~dai~~k~Lk~lslv   87 (324)
T KOG4652|consen    8 NEKQSLEFMTRLLYVAISTILRERGIFPEEYFKDRYVDGNLLVMTLLRRQDAPEGRLVSWLEKGVHDAIRQKLLKKLSLV   87 (324)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhcccchHHhcccccccchhhhhhhhccCCccccchHHHHHHHHHHHHHHHHHhheEEE
Confidence            446899999999999999999999999999999988887  43332 22222221 266667788888899999999999


Q ss_pred             EEeCCCcceeEEEeeecccccccccc-----ccC-Cc--------CCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEE
Q 028572           88 IMSKATKEVLERWNFSIETDNEVVEK-----GVS-RE--------KSDKEIMREIQAIMRQIASSITYLPCLDETCVFDV  153 (207)
Q Consensus        88 I~~~~~~e~lEr~~Fdi~~~~~~~~~-----~~~-~~--------~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~v  153 (207)
                      |++.++.+.+|.|+|.+.++....-.     +.. ++        .+..+..+++...+||+--+...|-+||++|.-.-
T Consensus        88 i~~~~d~~~IE~yifsF~Y~e~g~v~~~in~~~n~~s~~~~e~s~l~~ddtrr~~~~lir~~~i~~q~LePLP~~~~~~~  167 (324)
T KOG4652|consen   88 ITESEDPEDIEVYIFSFVYDEEGSVSARINYGINGQSSKAFELSQLSMDDTRRQFAKLIRKLHICTQLLEPLPQGLILSM  167 (324)
T ss_pred             EecCCCCcceeEEEEEEEecCCCceeEEEecCCCCCcCchhhhhhhhhHHHHHHHHHHHHHHHHHHHhccCccchhhhhh
Confidence            99999889999999999997654211     000 00        12234678899999999999999999998776654


Q ss_pred             EEEecCC---CCCCCccccCCccc---ccCCceeeeeeeecCceeeeeEE
Q 028572          154 LAYTDKD---VAVPFTWIESDPKL---IANPQMVKLHSFDTKIHKVDTLV  197 (207)
Q Consensus       154 lv~t~~~---~~~p~~Wi~sd~~~---i~n~~~v~lrsfsT~~h~v~~~V  197 (207)
                      .+|=++.   ...|...-++++..   =.|++.+-+...+|++|++...|
T Consensus       168 rl~Y~e~~ppDyqP~gFkd~~~~~y~~p~~p~~~~IG~v~~~hH~~~~kv  217 (324)
T KOG4652|consen  168 RLYYTERVPPDYQPEGFKDSTRAFYTLPVNPEQINIGAVSTPHHKGFVKV  217 (324)
T ss_pred             eeeecccCCccCCCcccccCccceeecCCCccceeeccccCccceeEEEE
Confidence            4444332   23466677775332   24788899999999999887755

>PF07855 DUF1649: Protein of unknown function (DUF1649); InterPro: IPR012445 This family represents Autophagy-related protein 101

Probab=98.47  E-value=2.7e-06  Score=69.75  Aligned_cols=127  Identities=17%  Similarity=0.235  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhhhhhhhccCCCCCCcch--hhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccc--------eEEE
Q 028572           17 AAIVSEFFGYAANSILYNRGVYPEESFV--KVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQ--------RVVL   86 (207)
Q Consensus        17 ~~~v~efLe~aih~ILy~RgiYP~~~F~--~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~--------kl~l   86 (207)
                      ...+.|-+...+|+|||+|-+ ++=.-.  .+-.+|++.-.+.+|+|..-|++-+.++.+||.++.-.        .|.|
T Consensus         7 ~~~v~evv~~ilHTIlFhR~~-G~v~p~dv~~e~ldiTy~~~~~~el~~~Id~ki~~f~~~l~~~~~~~~~~~~~gqI~l   85 (163)
T PF07855_consen    7 RSQVREVVKAILHTILFHRAF-GTVRPKDVTCEFLDITYPRCNDPELESLIDEKINQFIRQLEKHPSKSSNGLGRGQISL   85 (163)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc-CcccccccccceecceeeccCcHHHHHHHHHHHHHHHHHHHhCcCccCCCcceEEEEE
Confidence            345899999999999999943 222223  45677999889999999999999999999999887654        7888


Q ss_pred             EEEeCCCc-----------ceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhh----hcCCCCC
Q 028572           87 VIMSKATK-----------EVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSI----TYLPCLD  146 (207)
Q Consensus        87 vI~~~~~~-----------e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~----~~Lp~L~  146 (207)
                      .++.+..+           .+.|+|..++...+...+++  ..+-.+.+.+.|++.+.+|...+    .++|+++
T Consensus        86 ~F~ekr~kk~WF~~~~~e~v~WE~W~I~v~v~~~~~~~e--r~~~r~~~~~~L~~~l~~Ii~~vn~~kdhIPpIt  158 (163)
T PF07855_consen   86 QFYEKRRKKSWFVGSGEEEVPWEQWTINVTVATPRTESE--RQKVREAVEDSLREALFKIIEIVNRHKDHIPPIT  158 (163)
T ss_pred             EEEeecccccccccCCcccccceEEEEEEEEEcCCCchH--HHHHHHHHHHHHHHHHHHHHHHHCcCcccCCCCC
Confidence            88776433           37799999998866432211  22334566778899999887654    5677775

>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation

Probab=95.10  E-value=1.1  Score=38.53  Aligned_cols=170  Identities=21%  Similarity=0.312  Sum_probs=97.3

Q ss_pred             HHHHHHHhhhhhhhccC--------CCCCCcc-hhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccc----eEEE
Q 028572           20 VSEFFGYAANSILYNRG--------VYPEESF-VKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQ----RVVL   86 (207)
Q Consensus        20 v~efLe~aih~ILy~Rg--------iYP~~~F-~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~----kl~l   86 (207)
                      |.+|+.-+.|-||--|-        ......+ ..-+-||+-+  -..|+       +...++.|...+...    -+++
T Consensus         1 I~~F~~Kaa~iIl~SR~~~~~~~~~~~~~~~~~~~nkWFNL~~--~e~~~-------~~~~l~~w~~~~~~~~~~pPlvI   71 (233)
T PF10033_consen    1 IQNFFLKAAQIILQSRLNLSPSSSSSSSSSSSRKRNKWFNLEI--DESDE-------LREELKRWRSCSDLESRLPPLVI   71 (233)
T ss_pred             ChHHHHHHHHHheeeccccCCCcccccccCCCCCCCccEeecC--CCcHH-------HHHHHHHhhhcccccCCCCCEEE
Confidence            46899999999999998        1222222 4566788766  23333       455667777633332    2333


Q ss_pred             EEE-e---------------------------CCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhh
Q 028572           87 VIM-S---------------------------KATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASS  138 (207)
Q Consensus        87 vI~-~---------------------------~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s  138 (207)
                      -|+ +                           +.+..+||||++.++....... ..........+-+.+-=.+|-|-+.
T Consensus        72 ei~Ld~~~l~~~~~l~l~d~~g~~~~v~~~~~~~~~ivLERW~i~~~~~~~~~~-~~~~~~~l~~vYK~~ivLfRSLys~  150 (233)
T PF10033_consen   72 EIYLDTRQLSSNQSLVLKDDDGKRWDVCKGRSKKSEIVLERWLIELDSSSSPPS-PSDSGPELPTVYKRSIVLFRSLYSL  150 (233)
T ss_pred             EEEEecCCCCCCCceEecCCCCceeeecccccCCCcEEEEEEEEEEecCCCCCC-ccccchhHHHHHHHHHHHHHHHHHH
Confidence            222 1                           1245688999999982111111 1111234556666666666677777


Q ss_pred             hhcCCC------C----CCCceEEEEEEecCCCC--CCC-------ccccCCcccccCCceeeeeeeecCceeeeeEEEE
Q 028572          139 ITYLPC------L----DETCVFDVLAYTDKDVA--VPF-------TWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSY  199 (207)
Q Consensus       139 ~~~Lp~------L----~~~ctF~vlv~t~~~~~--~p~-------~Wi~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y  199 (207)
                      ...||.      +    -..+.|.+..-.-....  .+.       +-++++..   .-+...+..+.|.+-.+...|+|
T Consensus       151 ~RlLPA~kl~~~l~~~~~~~~~l~i~~Ri~~g~~~~~~~g~~~ls~p~~~~~~~---~~~~~~f~pv~Tp~G~L~isV~Y  227 (233)
T PF10033_consen  151 TRLLPAYKLFRRLAKSSSSSSSLSIGYRISDGSPPILSKGRIGLSKPIIPSESN---HMEQYSFGPVETPLGSLCISVSY  227 (233)
T ss_pred             HHhChHHHHHHHhhhccCCCCcceeEEEEecCCcccccCCcccccccccCCCCC---ceeEEEECCcccCCccEEEEEEe
Confidence            777773      2    02346666655542110  001       11111111   22578899999999999999999


Q ss_pred             ecC
Q 028572          200 KND  202 (207)
Q Consensus       200 ~~~  202 (207)
                      |.+
T Consensus       228 R~~  230 (233)
T PF10033_consen  228 RTD  230 (233)
T ss_pred             cCC
Confidence            974

They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].

>KOG4493 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.56  E-value=1.5  Score=37.49  Aligned_cols=140  Identities=17%  Similarity=0.199  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhhhhhhccCC----CCCC---cchhhh-------hcCCccccccCHhHHHHHHHHHHHHHHHHHcCc---c
Q 028572           19 IVSEFFGYAANSILYNRGV----YPEE---SFVKVK-------KYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGK---L   81 (207)
Q Consensus        19 ~v~efLe~aih~ILy~Rgi----YP~~---~F~~~r-------~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~---v   81 (207)
                      =+.|-..+.+|++||.|.+    |-.+   +|..+.       ...++.-.+...+|+.=|+..+.+.+.||++..   +
T Consensus        16 qv~eaV~~ifh~vLlhR~vgkf~y~~~~~~s~GtVg~kdvdce~iDiTYV~~~s~EL~~kl~~~i~qF~~~ir~~~~~g~   95 (219)
T KOG4493|consen   16 QVTEAVTCIFHTVLLHREVGKFVYGVELHRSFGTVGAKDVDCEFIDITYVRCVSAELNEKLDEKIAQFIDTIRNEAGAGV   95 (219)
T ss_pred             ccchhhhhHHHHHHHHHhhhheEecceeEEEeccccccccceeEEEEEEEEechHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            3677888899999999975    3322   222221       233344468889999999999999999998744   4


Q ss_pred             ceEEEEEEeC---------CCcceeEEEeeeccccccccccccCCcCC--HHHHHHHHHHHHHHHHhhhhcCCCCCCCce
Q 028572           82 QRVVLVIMSK---------ATKEVLERWNFSIETDNEVVEKGVSREKS--DKEIMREIQAIMRQIASSITYLPCLDETCV  150 (207)
Q Consensus        82 ~kl~lvI~~~---------~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~--~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ct  150 (207)
                      ..+.|-++.+         +..-+.|.|...++.......++.+.-.+  .+.+.+.. --+-+....-++||..|...-
T Consensus        96 gQi~L~FYekskK~~Wf~~~e~ipWEqW~l~l~vl~~~~~~e~q~~rs~vs~~l~ekv-~~i~E~~Nr~~y~pk~ptq~e  174 (219)
T KOG4493|consen   96 GQISLEFYEKSKKKRWFFKDETIPWEQWTLHLDVLEEESEDERQYCRSHVSDLLEEKV-EQIVEAMNRRSYLPKMPTQSE  174 (219)
T ss_pred             ceEeeeeeecccCCCCCcCCCCccceeEEEEEEEeecccccccHHHHHHHHHHHHHHH-HHHHHHhhhhccCcCCchhhh
Confidence            5689999987         34567899998888766533222110000  11122211 123345567789999998777


Q ss_pred             EEEEEEecC
Q 028572          151 FDVLAYTDK  159 (207)
Q Consensus       151 F~vlv~t~~  159 (207)
                      |...-.|.-
T Consensus       175 ~~~iF~t~~  183 (219)
T KOG4493|consen  175 SDNIFDTPF  183 (219)
T ss_pred             cchhccCCc
Confidence            766644443

>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []

Probab=80.16  E-value=33  Score=30.44  Aligned_cols=145  Identities=14%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             cceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHh-----------------HHHHHHHHHHH
Q 028572            9 DIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG-----------------VKSFIANLTAQ   71 (207)
Q Consensus         9 ~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~-----------------l~~YI~~~l~~   71 (207)
                      ..+|.+|..++++|+|.+    |||||+=-|-- ++.-+.|--...++.+..                 +-+=+++++..
T Consensus        53 g~vtqd~ccrfV~ElLK~----iLYQRqQiPlp-YeQL~~f~~k~pq~~d~~~kk~~~~~~~~~kKcqq~L~eLE~vl~h  127 (264)
T PF06581_consen   53 GPVTQDGCCRFVCELLKH----ILYQRQQIPLP-YEQLAFFYRKSPQAKDDVRKKVSFSTEQSNKKCQQALQELESVLSH  127 (264)
T ss_dssp             S---HHHHHHHHHHHHHH----HHHHTTSSSS--HHHHT-----------------------HHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhHHHHHHHHHH----HHhhhhcCCCh-HHHHHHHHhcCcccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            357888999999998774    89999988762 222111111111211111                 22223344444


Q ss_pred             HHHHHHcCccceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCC--CCCCc
Q 028572           72 LSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPC--LDETC  149 (207)
Q Consensus        72 v~~~L~~g~v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~--L~~~c  149 (207)
                      +...-....|.++.+.+=. .---+-|-|..|+.-.....     .+.+. ....=+|..+|.|..++.|=-.  .|---
T Consensus       128 Le~lFs~t~Vp~VLILLGg-t~~SPKE~YeInl~~l~~~s-----~e~sl-st~~clRkLfRsLf~aD~Fse~~~~Pl~~  200 (264)
T PF06581_consen  128 LEQLFSLTLVPRVLILLGG-TAVSPKEFYEINLERLVPNS-----KEQSL-STAVCLRKLFRSLFTADAFSELQAPPLMG  200 (264)
T ss_dssp             HHHHHHHS---EEEEEESS--SSS-SEEEEEE-TTS-------------S-HHHHHHHHHHHHHHHTTTT---S-----E
T ss_pred             HHHHHhcCccceEEEEecC-ccCCcceeEEEcchhhcccc-----ccccc-ccHHHHHHHHHHHHcccchhhccCCCccc
Confidence            4444445667777665543 33347799999986433211     11122 1223466667777666544321  22222


Q ss_pred             eEEEEEEecCCCCCCCccc
Q 028572          150 VFDVLAYTDKDVAVPFTWI  168 (207)
Q Consensus       150 tF~vlv~t~~~~~~p~~Wi  168 (207)
                      | -|++....|..  .+|-
T Consensus       201 T-iVmv~~hRdcg--~dWF  216 (264)
T PF06581_consen  201 T-IVMVQGHRDCG--SDWF  216 (264)
T ss_dssp             E-EEEEEEECCC----SSS
T ss_pred             e-EEEEEcCCCCC--cccc
Confidence            3 45566655543  4565

This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2v64_A	213	Crystallographic Structure Of The Conformational Di		1e-52
1klq_A	197	The Mad2 Spindle Checkpoint Protein Undergoes Simil		1e-52
3gmh_A	207	Crystal Structure Of The Mad2 Dimer Length = 207		1e-52
2vfx_A	206	Structure Of The Symmetric Mad2 Dimer Length = 206		2e-52
1go4_A	205	Crystal Structure Of Mad1-Mad2 Reveals A Conserved		7e-52
1s2h_A	206	The Mad2 Spindle Checkpoint Protein Possesses Two D		7e-52
2qyf_A	206	Crystal Structure Of The Mad2P31(COMET)MAD2-Binding		1e-51
2v64_D	207	Crystallographic Structure Of The Conformational Di		4e-51
1duj_A	187	Solution Structure Of The Spindle Assembly Checkpoi		2e-50
4aez_B	203	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-49
4fjo_C	210	Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Compl		6e-08
3abd_A	227	Structure Of Human Rev7 In Complex With A Human Rev		4e-07

>pdb|2V64|A Chain A, Crystallographic Structure Of The Conformational Dimer Of The Spindle Assembly Checkpoint Protein Mad2. Length = 213

Iteration: 1
 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 133/190 (70%)
Query: 11  ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
           ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  +  ++ N+  
Sbjct: 19  ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 78
Query: 71  QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
           QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS K I  EI++
Sbjct: 79  QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 138
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
           ++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + V+L SF T I
Sbjct: 139 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 198
Query: 191 HKVDTLVSYK 200
           HKV+++V+YK
Sbjct: 199 HKVNSMVAYK 208

>pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Undergoes Similar Major Conformational Changes Upon Binding To Either Mad1 Or Cdc20 Length = 197

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 133/190 (70%)
Query: 11  ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
           ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  +  ++ N+  
Sbjct: 3   ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 62
Query: 71  QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
           QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS K I  EI++
Sbjct: 63  QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 122
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
           ++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + V+L SF T I
Sbjct: 123 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 182
Query: 191 HKVDTLVSYK 200
           HKV+++V+YK
Sbjct: 183 HKVNSMVAYK 192

>pdb|3GMH|A Chain A, Crystal Structure Of The Mad2 Dimer Length = 207

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 133/190 (70%)
Query: 11  ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
           ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  +  ++ N+  
Sbjct: 13  ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 72
Query: 71  QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
           QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS K I  EI++
Sbjct: 73  QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 132
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
           ++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + V+L SF T I
Sbjct: 133 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 192
Query: 191 HKVDTLVSYK 200
           HKV+++V+YK
Sbjct: 193 HKVNSMVAYK 202

>pdb|2VFX|A Chain A, Structure Of The Symmetric Mad2 Dimer Length = 206

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 137/200 (68%)
Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  IT RGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct: 2   MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61
Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE+D    +    REKS
Sbjct: 62  LIKYLNNVVEQLKDWLYKSSVQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKS 121
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 122 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
           V+L SF T IHKV+++V+YK
Sbjct: 182 VRLRSFTTTIHKVNSMVAYK 201

>pdb|1GO4|A Chain A, Crystal Structure Of Mad1-Mad2 Reveals A Conserved Mad2 Binding Motif In Mad1 And Cdc20. Length = 205

Iteration: 1
 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 136/200 (68%)
Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct: 1   MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 60
Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct: 61  LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 120
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++ QI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 121 QKAIQDEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 180
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
           V+L SF T IHKV+++V+YK
Sbjct: 181 VRLRSFTTTIHKVNSMVAYK 200

>pdb|1S2H|A Chain A, The Mad2 Spindle Checkpoint Protein Possesses Two Distinct Natively Folded States Length = 206

Iteration: 1
 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 136/200 (68%)
Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct: 2   MALQLSREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61
Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct: 62  LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 121
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++ QI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 122 QKAIQDEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
           V+L SF T IHKV+++V+YK
Sbjct: 182 VRLRSFTTTIHKVNSMVAYK 201

>pdb|2QYF|A Chain A, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding Peptide Ternary Complex Length = 206

Iteration: 1
 Score =  199 bits (506), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 95/200 (47%), Positives = 135/200 (67%)
Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  IT RGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct: 2   MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61
Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS
Sbjct: 62  LIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKS 121
Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 122 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181
Query: 181 VKLHSFDTKIHKVDTLVSYK 200
           V+L SF T IHKV++ V+YK
Sbjct: 182 VRLRSFTTTIHKVNSXVAYK 201

>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of The Spindle Assembly Checkpoint Protein Mad2. Length = 207

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 134/190 (70%), Gaps = 6/190 (3%)
Query: 11  ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
           ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  +  ++ N+  
Sbjct: 19  ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 78
Query: 71  QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
           QL +WL    +Q++V+VI +  + EVLERW F IE D     KG S EKS K I  EI++
Sbjct: 79  QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECD-----KG-SGEKSQKAIQDEIRS 132
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
           ++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + V+L SF T I
Sbjct: 133 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 192
Query: 191 HKVDTLVSYK 200
           HKV+++V+YK
Sbjct: 193 HKVNSMVAYK 202

>pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assembly Checkpoint Protein Human Mad2 Length = 187

Iteration: 1
 Score =  195 bits (495), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 128/185 (69%)
Query: 11  ITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTA 70
           ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  +  ++ N+  
Sbjct: 3   ITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVE 62
Query: 71  QLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQA 130
           QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS K I  EI++
Sbjct: 63  QLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRS 122
Query: 131 IMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKI 190
           ++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + V+L SF T I
Sbjct: 123 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFTTTI 182
Query: 191 HKVDT 195
           HKV++
Sbjct: 183 HKVNS 187

>pdb|4AEZ|B Chain B, Crystal Structure Of Mitotic Checkpoint Complex Length = 203

Iteration: 1
 Score =  189 bits (480), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 133/188 (70%), Gaps = 1/188 (0%)
Query: 14  RGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLS 73
           +GS+ +VSEFF YA NSIL+ RG+YP E F  V+KYGL ML++ DE VK++I  + +QL 
Sbjct: 13  KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLH 72
Query: 74  EWLEAGKLQRVVLVIMSKATKEVLERWNFSIE-TDNEVVEKGVSREKSDKEIMREIQAIM 132
           +W+ A K+Q+++LVI SK + E LERW F++E  D     + +  ++ +  + +EIQA++
Sbjct: 73  KWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALI 132
Query: 133 RQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFDTKIHK 192
            QI +++T+LP L+E C F+VL Y DKD  VP  W++SDP+++ + + V+L SF T +HK
Sbjct: 133 AQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHK 192
Query: 193 VDTLVSYK 200
           +D  V+Y+
Sbjct: 193 IDCQVAYR 200

>pdb|4FJO|C Chain C, Structure Of The Rev1 Ctd-Rev37-Pol Kappa Rir Complex Length = 210

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 94/202 (46%), Gaps = 24/202 (11%)
Query: 17  AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
           A ++SEF   A + ILY R VYP   F K KKY +P+ ++    +  +I +    +   L
Sbjct: 16  ADVLSEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 75
Query: 77  EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSD---KEIMREIQAIMR 133
           E   +++VV+VI+ K  + V E++ F      E+ +  +    SD     + + + A + 
Sbjct: 76  EKNDVEKVVVVILDKEHRPV-EKFVF------EITQPPLLSINSDSLLSHVEQLLAAFIL 128
Query: 134 QIASSITYLPCLDETCVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMVK 182
           +I+     L      C F VL +T +          V   F WI +D +   + +P+++ 
Sbjct: 129 KISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIP 188
Query: 183 LHSFDTKIHKVDTLV---SYKN 201
           L +  + I K+   V   ++KN
Sbjct: 189 LKTMTSDILKMQLYVEERAHKN 210

>pdb|3ABD|A Chain A, Structure Of Human Rev7 In Complex With A Human Rev3 Fragment In A Monoclinic Crystal Length = 227

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 87/192 (45%), Gaps = 15/192 (7%)
Query: 17  AAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWL 76
           A ++ EF   A + ILY R VYP   F K KKY +P+ ++    +  +I +    +   L
Sbjct: 32  ADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLL 91
Query: 77  EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIA 136
           E   +++VV+VI+ K  + V E++ F I     +     S     ++++    A + +I+
Sbjct: 92  EKNDVEKVVVVILDKEHRPV-EKFVFEITQPPLLSISSDSLLSHVEQLL---AAFILKIS 147
Query: 137 SSITYLPCLDETCVFDVLAYTDK---------DVAVPFTWIESDPK--LIANPQMVKLHS 185
                L      C F VL +T +          V   F WI +D +   + +P+++ L +
Sbjct: 148 VCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKT 207
Query: 186 FDTKIHKVDTLV 197
             + I K+   V
Sbjct: 208 MTSDILKMQLYV 219

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2vfx_A	206	Mitotic spindle assembly checkpoint protein MAD2A;	1e-86
4aez_B	203	MAD2, mitotic spindle checkpoint component MAD2; c	1e-77
3abd_A	227	Mitotic spindle assembly checkpoint protein MAD2B;	1e-64
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A Length = 206

 Score =  253 bits (647), Expect = 1e-86
 Identities = 96/205 (46%), Positives = 138/205 (67%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           MA +   +  IT RGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  
Sbjct: 2   MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLE 61

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  ++ N+  QL +WL    +Q++V+VI +  + EVLERW F IE+D    +    REKS
Sbjct: 62  LIKYLNNVVEQLKDWLYKSSVQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKS 121

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQM 180
            K I  EI++++RQI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + 
Sbjct: 122 QKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEE 181

Query: 181 VKLHSFDTKIHKVDTLVSYKNDEWD 205
           V+L SF T IHKV+++V+YK    D
Sbjct: 182 VRLRSFTTTIHKVNSMVAYKIPVND 206

>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 203

 Score =  230 bits (588), Expect = 1e-77
 Identities = 86/203 (42%), Positives = 140/203 (68%), Gaps = 2/203 (0%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
           M+S    +   + +GS+ +VSEFF YA NSIL+ RG+YP E F  V+KYGL ML++ DE 
Sbjct: 1   MSS-VPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEE 59

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVE-KGVSREK 119
           VK++I  + +QL +W+ A K+Q+++LVI SK + E LERW F++E  +   + + +  ++
Sbjct: 60  VKTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKE 119

Query: 120 SDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQ 179
            +  + +EIQA++ QI +++T+LP L+E C F+VL Y DKD  VP  W++SDP+++ + +
Sbjct: 120 DELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAE 179

Query: 180 MVKLHSFDTKIHKVDTLVSYKND 202
            V+L SF T +HK+D  V+Y+ +
Sbjct: 180 QVQLRSFSTSMHKIDCQVAYRVN 202

>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C* Length = 227

 Score =  198 bits (504), Expect = 1e-64
 Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 1   MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEG 60
             +    +D+   +  A ++ EF   A + ILY R VYP   F K KKY +P+ ++    
Sbjct: 16  SMTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPE 75

Query: 61  VKSFIANLTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKS 120
           +  +I +    +   LE   +++VV+VI+ K     +E++ F I     +    +S +  
Sbjct: 76  LNQYIQDTLHCVKPLLEKNDVEKVVVVILDKEH-RPVEKFVFEITQPPLL---SISSDSL 131

Query: 121 DKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVP---------FTWIESD 171
              + + + A + +I+     L      C F VL +T +              F WI +D
Sbjct: 132 LSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILAD 191

Query: 172 PKL--IANPQMVKLHSFDTKIHKVDTLVSYKND 202
            +   + +P+++ L +  + I K+   V  +  
Sbjct: 192 EQDVHMHDPRLIPLKTMTSDILKMQLYVEERAH 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 33/190 (17%), Positives = 63/190 (33%), Gaps = 63/190 (33%)

Query: 55  LTEDEGVKSFIANLTAQLSEWL--EAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVE 112
           LT DE     +  L  +  + L  E        L I++++ ++ L  W+           
Sbjct: 298 LTPDEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNW--------- 347

Query: 113 KGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFT-----W 167
                +  + + +  I      I SS+  L   +   +FD L+       +P       W
Sbjct: 348 -----KHVNCDKLTTI------IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 168 ---IESDPKLIANPQMVK--------------LHS--FDTK--------IHKVDTLV-SY 199
              I+SD  ++ N ++ K              + S   + K        +H+  ++V  Y
Sbjct: 397 FDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR--SIVDHY 453

Query: 200 KN----DEWD 205
                 D  D
Sbjct: 454 NIPKTFDSDD 463

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
4aez_B	203	MAD2, mitotic spindle checkpoint component MAD2; c	100.0
2vfx_A	206	Mitotic spindle assembly checkpoint protein MAD2A;	100.0
3abd_A	227	Mitotic spindle assembly checkpoint protein MAD2B;	100.0
2qyf_B	240	MAD2L1-binding protein; MAD2 family, spindle assem	93.84

>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-73  Score=479.19  Aligned_cols=201  Identities=44%  Similarity=0.811  Sum_probs=175.4

Q ss_pred             CccccccccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCc
Q 028572            1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGK   80 (207)
Q Consensus         1 ma~~~~~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~   80 (207)
                      |++ +++++.||||||+++|+|||++|||+|||+|||||+++|+++|+||+||++||||+|++||++++.++++||.+|+
T Consensus         1 ~~~-~~~~~~itlkgS~~iv~eFl~~aInsILY~RgIYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~wL~~g~   79 (203)
T 4aez_B            1 MSS-VPIRTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKK   79 (203)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCc-ccccccccHHHHHHHHHHHHHHHHHHHHhccccCChHHchHhhhcCccceeecCHHHHHHHHHHHHHHHHHHHhCC
Confidence            554 6678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHH-HHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecC
Q 028572           81 LQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKE-IMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDK  159 (207)
Q Consensus        81 v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~-i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~  159 (207)
                      |+||+++|+++++++++|||+||++..+...+++...++++++ +++||||+|+||++++++||+||++|||+|++||++
T Consensus        80 v~klvlvI~~~~t~~~lEr~~Fdv~~~~~~~~~d~~~~k~~~e~iq~eira~lrqItasvt~Lp~L~~~ctF~vlvyt~~  159 (203)
T 4aez_B           80 IQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADK  159 (203)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEEECC---------CHHHHHHHHHHHHHHHHHHHHGGGTSCCCCSCEEEEEEEEEET
T ss_pred             ceEEEEEEEcCCCCceEEEEEEeccccCccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceEEEEEEeCC
Confidence            9999999999999999999999999976543322223466777 999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCcccccCCceeeeeeeecCceeeeeEEEEecC
Q 028572          160 DVAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKND  202 (207)
Q Consensus       160 ~~~~p~~Wi~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y~~~  202 (207)
                      ++++|.+|++|||+.|.|+++||||||||++|||+++|+||.+
T Consensus       160 da~vp~~W~~sd~~~i~~~~~v~lrsfsT~~hkv~~~v~yk~~  202 (203)
T 4aez_B          160 DSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKIDCQVAYRVN  202 (203)
T ss_dssp             TCCCCTTEEECCCCCCSSCEEEEEEEEECSSEEEEEEEEECC-
T ss_pred             CCCCCCccccCCCeeccCccEEeeeeEecCCeeeeeEEEecCC
Confidence            9999999999999999999999999999999999999999974

>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A

Probab=100.00  E-value=6.3e-72  Score=470.96  Aligned_cols=205  Identities=47%  Similarity=0.823  Sum_probs=194.3

Q ss_pred             CccccccccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCc
Q 028572            1 MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGK   80 (207)
Q Consensus         1 ma~~~~~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~   80 (207)
                      ||+++.+++.||++||+++|+|||++|||+|||+|||||+++|+++|+||+||++||||+|++||+++++++++||.+|+
T Consensus         2 ~~~~~~~~~~itlk~s~~iv~efl~~ain~ILY~RgiYP~e~F~~~k~y~l~v~~sr~p~l~~YI~~~l~~l~~~L~~g~   81 (206)
T 2vfx_A            2 MALQLSREQGITARGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKSS   81 (206)
T ss_dssp             EEEEECCCCSBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCccccccceeeHHHHHHHHHHHHHHHHHHHHHhccCCChHHhHHHHHcCceeeEecCHHHHHHHHHHHHHHHHHHHhCc
Confidence            88877889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCC
Q 028572           81 LQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKD  160 (207)
Q Consensus        81 v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~  160 (207)
                      ++||+|+|+++++++++|||+||++.++...+.+...++++.++++||||+|+||++++++||+||++|||+|++||+++
T Consensus        82 v~klvlvI~~~~~~~~lEr~~Fd~~~~~~~~~~~~~~~~~~~ei~~eira~l~qi~~s~~~Lp~L~~~ctF~i~v~t~~~  161 (206)
T 2vfx_A           82 VQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAIQDEIRSVIRQITATVTFLPLLEVSCSFDLLIYTDKD  161 (206)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEEECTTC---CCCBSCCHHHHHHHHHHHHHHHHHHHTTSCCCCSCEEEEEEEEECTT
T ss_pred             eeEEEEEEEeCCCCceEEEEEEEeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEEEcCC
Confidence            99999999999999999999999999876544334456899999999999999999999999999999999999999999


Q ss_pred             CCCCCccccCCcccccCCceeeeeeeecCceeeeeEEEEecCccc
Q 028572          161 VAVPFTWIESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWD  205 (207)
Q Consensus       161 ~~~p~~Wi~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y~~~~~~  205 (207)
                      +..|..|+++||+.|.|++.||||||||++|||+++|+||.++||
T Consensus       162 ~~~P~~W~~sd~~~i~~~~~v~lrs~sT~~h~v~~~V~y~~~~~~  206 (206)
T 2vfx_A          162 LVVPEKWEESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIPVND  206 (206)
T ss_dssp             SCCCTTCCCCCCCCCCSEEEEECCCEECSSEEEEEEEEEECCCCC
T ss_pred             CCCCCCcccCcccccCCCcEEeeeEEecCCeEEEEEEEEecCCCC
Confidence            999999999999999999999999999999999999999998876

>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*

Probab=100.00  E-value=1.7e-59  Score=400.38  Aligned_cols=190  Identities=25%  Similarity=0.411  Sum_probs=164.5

Q ss_pred             cccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEE
Q 028572            7 AKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVL   86 (207)
Q Consensus         7 ~~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~l   86 (207)
                      .++....++++++|+|||++|||+|||+|||||+++|+++|+||+||++||||+|++||++++.++++||.+|+|+||+|
T Consensus        22 ~~~~~~~~~~a~iv~eFlevainsILY~RgVYP~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~klvl  101 (227)
T 3abd_A           22 RQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVV  101 (227)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHhccccCChHHhhHHHhcCCceEEecCHHHHHHHHHHHHHHHHHHHhCceeEEEE
Confidence            44445556999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCCCC----
Q 028572           87 VIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVA----  162 (207)
Q Consensus        87 vI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~~~----  162 (207)
                      +|+++++ +++|||+||++.++....   ..++++.+++++|||+|+||++++++||+||++|||+|++||++++.    
T Consensus       102 vI~~~~~-e~lER~~Fdi~~~~~~~~---~~~~~~~eie~eira~l~qi~~s~~~Lp~L~~~ctF~ilv~t~~~~~~~~~  177 (227)
T 3abd_A          102 VILDKEH-RPVEKFVFEITQPPLLSI---SSDSLLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTREAATRNME  177 (227)
T ss_dssp             EEECTTS-CEEEEEEEEEECCC---------CCHHHHHHHHHHHHHHHHHTGGGTSCCCCTTCEEEEEEEEC--------
T ss_pred             EEEcCCC-cEEEEEEEEeeccCcccc---cCcccHHHHHHHHHHHHHHHHHHHhhCCCCCCCcEEEEEEEecCccccccc
Confidence            9999987 899999999998864321   12346789999999999999999999999999999999999998754    


Q ss_pred             ---C--CCccccCCccc--ccCCceeeeeeeecCceeeeeEEEEe
Q 028572          163 ---V--PFTWIESDPKL--IANPQMVKLHSFDTKIHKVDTLVSYK  200 (207)
Q Consensus       163 ---~--p~~Wi~sd~~~--i~n~~~v~lrsfsT~~h~v~~~V~y~  200 (207)
                         .  +++|+++|++.  +.+++.+|||||+|++|+|+++|+-.
T Consensus       178 ~~~~~~~~pWi~ad~~~~~~~~~~~vplrs~~t~~~~~~~~VEe~  222 (227)
T 3abd_A          178 KIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEER  222 (227)
T ss_dssp             ------CCCEEECCHHHHCCSSEEEEEEEEEECSSCEEEEEEEEE
T ss_pred             cccCcCCCCceECCccccccCCceEEeeEEEecCcEEEEEEEEcc
Confidence               2  35699999986  78899999999999999999999754

>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint, cell cycle, cell division, mitosis, nucleus, phosphorylation; 2.30A {Homo sapiens}

Probab=93.84  E-value=2.4  Score=35.80  Aligned_cols=130  Identities=13%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             ceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhh-hcCCc-----------------cccccCHhHHHHHHHHHHH
Q 028572           10 IITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVK-KYGLP-----------------MLLTEDEGVKSFIANLTAQ   71 (207)
Q Consensus        10 ~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r-~y~l~-----------------v~~sr~p~l~~YI~~~l~~   71 (207)
                      .+|.++.+.++.|++.    .|||+|+=-|-- |+.-+ .|.-+                 .-.-+...+.+=+++++..
T Consensus        29 ~~t~~~~~~~v~eiik----~lLYqR~QIP~~-y~~L~~~~~k~~~~~~d~~~~k~~~~~~~~~KK~~k~i~~l~~L~~~  103 (240)
T 2qyf_B           29 PVSQEGCCQFTCELLK----HIMYQRQQLPLP-YEQLKHFYRKPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSH  103 (240)
T ss_dssp             CC-CHHHHHHHHHHHH----HHHHHTTSSSSC-HHHHTC---------------------------CCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH----HHheecccCCch-HHHHHHHHhhhccccchhhhhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence            4556666666666665    588999866543 22221 12111                 1111112445557777777


Q ss_pred             HHHHHHcCccceEEEEEEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCC--CCCCCc
Q 028572           72 LSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLP--CLDETC  149 (207)
Q Consensus        72 v~~~L~~g~v~kl~lvI~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp--~L~~~c  149 (207)
                      +...+....+.+++ +|+....-.+-|-|.+++.......   .....+.   ..=+|.+||+|..++.+-.  -.|.--
T Consensus       104 L~~~f~~~~v~~V~-illGsS~~sPKE~Y~i~~~~~~~~~---~~~~ls~---~~~lRkl~RaLi~~d~~s~~~~~~lt~  176 (240)
T 2qyf_B          104 LEDFFARTLVPRVL-ILLGGNALSPKEFYELDLSLLAPYS---VDQSLST---AACLRRLFRAIFMADAFSELQAPPLMG  176 (240)
T ss_dssp             HHHHHHHSCCCEEE-EEESSCSSSCSEEEEEECTTSCC------CCCSCH---HHHHHHHHHHHHHTTTTCCCSCCCCCE
T ss_pred             HHHHHhcCCCcEEE-EEecCCCCCcceEEEEEcccccCcc---cccccch---HHHHHHHHHHHHhcCCccccccCCCee
Confidence            88777777788754 4554555568899999997643211   1111221   1227888888888866633  234444


Q ss_pred             eE
Q 028572          150 VF  151 (207)
Q Consensus       150 tF  151 (207)
                      ||
T Consensus       177 tf  178 (240)
T 2qyf_B          177 TV  178 (240)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1go4a_	196	d.135.1.1 (A:) The spindle assembly checkpoint pro	3e-83

>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  243 bits (622), Expect = 3e-83
 Identities = 93/193 (48%), Positives = 133/193 (68%)

Query: 8   KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIAN 67
           +  ITLRGSA IV+EFF +  NSILY RG+YP E+F +V+KYGL +L+T D  +  ++ N
Sbjct: 1   EQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNN 60

Query: 68  LTAQLSEWLEAGKLQRVVLVIMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMRE 127
           +  QL +WL    +Q++V+VI +  + EVLERW F IE D    +    REKS K I  E
Sbjct: 61  VVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDE 120

Query: 128 IQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTWIESDPKLIANPQMVKLHSFD 187
           I++++ QI +++T+LP L+ +C FD+L YTDKD+ VP  W ES P+ I N + V+L SF 
Sbjct: 121 IRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNSEEVRLRSFT 180

Query: 188 TKIHKVDTLVSYK 200
           T IHKV+++V+YK
Sbjct: 181 TTIHKVNSMVAYK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1go4a_	196	The spindle assembly checkpoint protein mad2 {Huma	100.0

>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-63  Score=413.73  Aligned_cols=195  Identities=48%  Similarity=0.854  Sum_probs=186.7

Q ss_pred             ccceehhhHHHHHHHHHHHhhhhhhhccCCCCCCcchhhhhcCCccccccCHhHHHHHHHHHHHHHHHHHcCccceEEEE
Q 028572            8 KDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKSFIANLTAQLSEWLEAGKLQRVVLV   87 (207)
Q Consensus         8 ~~~itl~~s~~~v~efLe~aih~ILy~RgiYP~~~F~~~r~y~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~kl~lv   87 (207)
                      ++.||+|||+++|+|||++|||+|||+|||||+++|+++++||+||++++||++++||+++++++.+||.+|.+++|+++
T Consensus         1 ~~~it~k~S~~~v~e~l~~ai~~ILY~RgiyP~~~F~~~~~~~l~v~~~~~~~l~~yi~~~~~~v~~~L~~~~l~~l~lv   80 (196)
T d1go4a_           1 EQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVV   80 (196)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHccCCChHHchhheECCeeEEEecCHHHHHHHHHHHHHHHHHHHhCccEEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcceeEEEeeeccccccccccccCCcCCHHHHHHHHHHHHHHHHhhhhcCCCCCCCceEEEEEEecCCCCCCCcc
Q 028572           88 IMSKATKEVLERWNFSIETDNEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDETCVFDVLAYTDKDVAVPFTW  167 (207)
Q Consensus        88 I~~~~~~e~lEr~~Fdi~~~~~~~~~~~~~~~~~~~i~~eiRa~l~qI~~s~~~Lp~L~~~ctF~vlv~t~~~~~~p~~W  167 (207)
                      |++.++++++|||+|++++++...+.+.+.+++.+++++++|++||||++++++||+||++|||+|++||++|.+.|+.|
T Consensus        81 I~~~~~~~vlEry~F~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ir~L~~~~~~Lp~Lp~~~tf~i~~yt~~d~~~P~~w  160 (196)
T d1go4a_          81 ISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIAQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKW  160 (196)
T ss_dssp             EEETTTCCEEEEEEEEEEECGGGGSCSSCBCCCHHHHHHHHHHHHHHHHHGGGTSCCCCSCEEEEEEEEEESSCCCCTTE
T ss_pred             EEeCCCCCeeEEEEEEEEecccCCcccccccCCHHHHHHHHHHHHHHHHHHHccCCCCCCCeEEEEEEEcCCCCCCCCcc
Confidence            99999999999999999998766555555567899999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccccCCceeeeeeeecCceeeeeEEEEecC
Q 028572          168 IESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKND  202 (207)
Q Consensus       168 i~sd~~~i~n~~~v~lrsfsT~~h~v~~~V~y~~~  202 (207)
                      +++||.+|.|++.|+||||||++|+|+++|+||..
T Consensus       161 ~~~~~~~i~~~e~v~lrs~sT~~H~v~~~V~yk~~  195 (196)
T d1go4a_         161 EESGPQFITNSEEVRLRSFTTTIHKVNSMVAYKIP  195 (196)
T ss_dssp             EECCCCCCBSCEEEECCCEECSSEEEEEEEEECCC
T ss_pred             cCCCCeecCCCcEEEEeEEecCCcEEeeEEEEecc
Confidence            99999999999999999999999999999999964