Citrus Sinensis ID: 028574

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELPL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEEEcHHHHHHHHHcccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHccccccccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVyfdveiagkpagrivmglfgkavpKTAENFRALCtgekgigksgkplhykgstfhriipsfmlqggdftlgdgrggesiygekfpdenfklkhtgpgllsmanagpdtngsqFFITTVTtswldgrhvVFGKVLSGMDVVYKVEaegrqngtpkskvvvadsgelpl
Flexible Loop (DISEMBL)
MASTNLLPLTMLWAIVLLATFSSIqakksdqnlKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCtgekgigksgkplHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVeaegrqngtpkskvvvadsgelpl
Low Complexity Region (SEG)
MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQggdftlgdgrggESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELPL
Disordered region (IsUnstruct)
*****LLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLK*****L**********NGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE***********************
Disordered Region (DISOPRED)
********LTMLWAIVLLATFSS***************KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVY***************VVVADSGELPL
Disordered Region (DISEMBL)
MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELPL
Disordered Region (DISPRO)
**STNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELPL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q9SP02	204	Peptidyl-prolyl cis-trans	yes	no	0.893	0.906	0.875	6e-92
Q8LDP4	201	Peptidyl-prolyl cis-trans	no	no	0.946	0.975	0.798	4e-91
Q9TW32	197	Peptidyl-prolyl cis-trans	yes	no	0.927	0.974	0.676	8e-73
P52015	171	Peptidyl-prolyl cis-trans	yes	no	0.806	0.976	0.742	2e-72
P52011	173	Peptidyl-prolyl cis-trans	no	no	0.811	0.971	0.714	1e-68
P21569	172	Peptidyl-prolyl cis-trans	N/A	no	0.806	0.970	0.706	1e-66
P21568	171	Peptidyl-prolyl cis-trans	N/A	no	0.806	0.976	0.706	2e-66
Q9SKQ0	174	Peptidyl-prolyl cis-trans	no	no	0.806	0.959	0.688	1e-65
P34790	172	Peptidyl-prolyl cis-trans	no	no	0.806	0.970	0.694	1e-65
Q39613	172	Peptidyl-prolyl cis-trans	N/A	no	0.806	0.970	0.688	2e-65

>sp|Q9SP02|CP20A_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1

 Score =  336 bits (862), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 162/185 (87%), Positives = 172/185 (92%)

Query: 23  SIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK 82
           +IQAKKS +NLKEIT+KVYFDVEI GK AGRIVMGLFGK VPKT ENFRALCTGEKGIGK
Sbjct: 20  AIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGK 79

Query: 83  SGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMA 142
           +GK LHYKGS+FHRIIPSFMLQGGDFT G+G GGESIYGEKF DENFKLKHTGPG LSMA
Sbjct: 80  NGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMA 139

Query: 143 NAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADS 202
           NAG DTNGSQFFITTVTTSWLDGRHVVFGKV++GMDVVYKVEAEG Q+GTPKSKVV+ DS
Sbjct: 140 NAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDS 199

Query: 203 GELPL 207
           GELPL
Sbjct: 200 GELPL 204

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Seems to be involved in root development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q8LDP4|CP19D_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2

 Score =  333 bits (855), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 159/199 (79%), Positives = 179/199 (89%), Gaps = 3/199 (1%)

Query: 9   LTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAE 68
             +L  + L    +SIQAK   ++LKE+T+KVYFDVEI GK AGR+V+GLFGKAVPKTAE
Sbjct: 6   FILLGTLFLFGAIASIQAK---EDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAE 62

Query: 69  NFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN 128
           NFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+QGGDFT G+G GGESIYG+KF DEN
Sbjct: 63  NFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADEN 122

Query: 129 FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR 188
           FKLKHTGPG+LSMAN+G DTNGSQFFITTVTTSWLDGRHVVFGKV+ GMDVVYK+EAEG+
Sbjct: 123 FKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGK 182

Query: 189 QNGTPKSKVVVADSGELPL 207
           Q+GTPKSKVV+ADSGELPL
Sbjct: 183 QSGTPKSKVVIADSGELPL 201

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TW32|PPIB_DICDI Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1

 Score =  273 bits (697), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 157/195 (80%), Gaps = 3/195 (1%)

Query: 11  MLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENF 70
           ++ AIVL+  ++       D    +ITNKV+FD+EI  KPAGRIV GL+GK VPKT ENF
Sbjct: 6   VVLAIVLVTLWAMPSEAGKDP---KITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENF 62

Query: 71  RALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFK 130
           RALCTGEKG+G SGKPLHYK S FHRIIP+FM+QGGDFT GDG GGESIYG+KF DENFK
Sbjct: 63  RALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFK 122

Query: 131 LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN 190
           +KH+ PGLLSMANAGP+TNGSQFFITTV TSWLDGRH VFG+V+ GMD+V  +E+ G Q+
Sbjct: 123 IKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQS 182

Query: 191 GTPKSKVVVADSGEL 205
           GTP     +++SGEL
Sbjct: 183 GTPSKIAKISNSGEL 197

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52015|CYP7_CAEEL Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2

 Score =  271 bits (694), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 124/167 (74%), Positives = 146/167 (87%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +V+FD+ IAGKP GRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLH+KGS FHRII
Sbjct: 5   RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRII 64

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM+QGGDFT G+G GGESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV
Sbjct: 65  PEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T+WLDG+HVVFG+V+ G+D+V KVE  G  +GTPKS+ ++AD G+L
Sbjct: 125 KTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52011|CYP3_CAEEL Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1

 Score =  259 bits (661), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 141/168 (83%)

Query: 38  NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
           +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRI
Sbjct: 4   SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63

Query: 98  IPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           IP+FM+QGGDFT G+G GGESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ T
Sbjct: 64  IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           V T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+L
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21569|CYPH_MAIZE Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1

 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 135/167 (80%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +V+FD+ + G PAGRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLHYKGSTFHR+I
Sbjct: 5   RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVI 64

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGDFT G+G GGESIYGEKFPDE F  K   PG+LSMANAGP+TNGSQFFI TV
Sbjct: 65  PEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTV 124

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WLDG+HVVFG+V+ GMDVV  +E  G +NG+    V VAD G+L
Sbjct: 125 ATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Zea mays (taxid: 4577)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21568|CYPH_SOLLC Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1

 Score =  251 bits (641), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 133/167 (79%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I G PAGR+VM LF    PKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+I
Sbjct: 5   KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVI 64

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGDFT G+G GGESIYG KF DENF  KHTGPG+LSMANAGP TNGSQFFI T 
Sbjct: 65  PGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTA 124

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WL+G+HVVFG+V+ GMDV+ K EA G  +G     VV+AD G+L
Sbjct: 125 KTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Solanum lycopersicum (taxid: 4081)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 137/167 (82%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I G PAG+IVM L+    PKTAENFRALCTGEKG+G+SGKPLH+KGS+FHR+I
Sbjct: 6   KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P+FM QGGDFT G+G GGESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV
Sbjct: 66  PNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTV 125

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VV+AD GE+
Sbjct: 126 KTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEI 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1

 Score =  249 bits (635), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 136/167 (81%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KVYFD+ I G+PAGRIVM L+    P+TAENFRALCTGEKG+G +GKPLH+KGS FHR+I
Sbjct: 5   KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P+FM QGGDFT G+G GGESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV
Sbjct: 65  PNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTV 124

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VVVAD G+L
Sbjct: 125 KTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Triggers the activation of bacterial AvrRpt2 protease activity upon infection by P.syringae. Activated AvrRpt2 confers virulence in plant lacking the RPS2 resistance gene. In plants expressing RPS2, the AvrRpt2-mediated degradation of RIN4 activates RPS2, which induces hypersensitive response (HR) and plant resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1

 Score =  248 bits (634), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 133/167 (79%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +V+FD+ + G+PAGRIVM LF    P+TAENFRALCTGEKG G+SGKPLHYK S+FHR+I
Sbjct: 5   RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVI 64

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGDFT G+G GGESIYG KF DENF  KHTGPG+LSMANAGP+TNGSQFFI T 
Sbjct: 65  PGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTA 124

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WLDG+HVVFG+V+ GMDVV  +E  G  +G    KVVV D G+L
Sbjct: 125 KTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Catharanthus roseus (taxid: 4058)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
224104269	207	predicted protein [Populus trichocarpa]	1.0	1.0	0.845	1e-99
210063564	207	cyclophilin [Camellia oleifera]	1.0	1.0	0.850	1e-99
118481371	207	unknown [Populus trichocarpa]	1.0	1.0	0.845	2e-99
395146517	206	peptidyl-prolyl cis-trans isomerase [Lin	0.971	0.975	0.865	1e-98
152206078	207	cyclophilin-like protein [Nicotiana taba	1.0	1.0	0.830	6e-98
346469779	202	hypothetical protein [Amblyomma maculatu	0.975	1.0	0.821	6e-96
255569359	204	cyclophilin, putative [Ricinus communis]	0.917	0.931	0.889	9e-96
449450816	204	PREDICTED: peptidyl-prolyl cis-trans iso	0.888	0.901	0.918	1e-95
388513449	204	unknown [Lotus japonicus]	0.985	1.0	0.830	1e-95
341575696	208	peptidyl-prolyl cis-trans isomerase [Car	0.942	0.937	0.866	3e-95

>gi|224104269|ref|XP_002313378.1| predicted protein [Populus trichocarpa] gi|118483106|gb|ABK93462.1| unknown [Populus trichocarpa] gi|118483497|gb|ABK93647.1| unknown [Populus trichocarpa] gi|118488634|gb|ABK96129.1| unknown [Populus trichocarpa] gi|222849786|gb|EEE87333.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 175/207 (84%), Positives = 189/207 (91%)

Query: 1   MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
           MA +  L +T+LW +VL  T + IQAKKS ++L EIT+KVYFDVE+ GKPAGRI +GLFG
Sbjct: 1   MARSGSLAVTLLWTLVLFGTLTLIQAKKSKEDLTEITHKVYFDVEVDGKPAGRITIGLFG 60

Query: 61  KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120
           K VPKT ENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+QGGDFTLGDGRGGESIY
Sbjct: 61  KTVPKTVENFRALCTGEKGVGKSGKPLHYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIY 120

Query: 121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
           GEKF DENFKLKHTGPG+LSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKV+SGMDVV
Sbjct: 121 GEKFADENFKLKHTGPGILSMANAGSDTNGSQFFITTVTTSWLDGRHVVFGKVISGMDVV 180

Query: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
           YKVEAEGRQNGTPKSKVVVADSGELPL
Sbjct: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|210063564|gb|ACJ06541.1| cyclophilin [Camellia oleifera]

 Score =  367 bits (943), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 176/207 (85%), Positives = 189/207 (91%)

Query: 1   MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
           MA T    L ++W +VL AT +  QAKKS ++LKE+T+KVYFDVEIAGKPAGRIVMGLFG
Sbjct: 1   MARTRSFSLALVWTLVLFATLALTQAKKSKEDLKEVTHKVYFDVEIAGKPAGRIVMGLFG 60

Query: 61  KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120
           KAVPKTAENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFMLQGGDFTLGDGRGGESIY
Sbjct: 61  KAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMLQGGDFTLGDGRGGESIY 120

Query: 121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
           G +F DENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV
Sbjct: 121 GGEFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180

Query: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
           YK+EAEG Q+GTPKS V +ADSGELPL
Sbjct: 181 YKIEAEGNQSGTPKSNVQIADSGELPL 207

Source: Camellia oleifera

Species: Camellia oleifera

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481371|gb|ABK92628.1| unknown [Populus trichocarpa]

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 175/207 (84%), Positives = 188/207 (90%)

Query: 1   MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
           MA + LL +T+LW +VL  T +  QAKKS ++LKEIT+KVYFDVEI GKPAGRI MGLFG
Sbjct: 1   MARSGLLAVTLLWTLVLFGTIAVTQAKKSKEDLKEITHKVYFDVEIDGKPAGRITMGLFG 60

Query: 61  KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120
           K VPKTAENFRALCTGEKGIGK GKPLHYKG+ FHRIIPSFM+QGGDFTLGDGRGGESIY
Sbjct: 61  KTVPKTAENFRALCTGEKGIGKDGKPLHYKGNVFHRIIPSFMIQGGDFTLGDGRGGESIY 120

Query: 121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
           GE F DENFKLKHTGPG LSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKV+SGMDVV
Sbjct: 121 GENFADENFKLKHTGPGTLSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVMSGMDVV 180

Query: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
           YK+EAEGRQNGTPKSKVV+ADSGELPL
Sbjct: 181 YKMEAEGRQNGTPKSKVVIADSGELPL 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146517|gb|AFN53672.1| peptidyl-prolyl cis-trans isomerase [Linum usitatissimum]

 Score =  364 bits (935), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/201 (86%), Positives = 186/201 (92%)

Query: 7   LPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKT 66
           L + +LW  +L  T + IQAKKSD+ LKEIT+KVYFDVEI GKPAGRI MGL+GKAVPKT
Sbjct: 6   LAVALLWGALLFGTLALIQAKKSDEKLKEITHKVYFDVEIDGKPAGRITMGLYGKAVPKT 65

Query: 67  AENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPD 126
           AENFRALCTGEKG+GKSGKPLHYKGS+FHRIIPSFMLQGGDFT GDGRGGESIYGEKF D
Sbjct: 66  AENFRALCTGEKGVGKSGKPLHYKGSSFHRIIPSFMLQGGDFTHGDGRGGESIYGEKFAD 125

Query: 127 ENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE 186
           ENFKLKHTGPGLLSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE
Sbjct: 126 ENFKLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE 185

Query: 187 GRQNGTPKSKVVVADSGELPL 207
           G+Q+GTPKSKVV+ DSGELPL
Sbjct: 186 GKQSGTPKSKVVIVDSGELPL 206

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|152206078|gb|ABS30424.1| cyclophilin-like protein [Nicotiana tabacum]

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 172/207 (83%), Positives = 189/207 (91%)

Query: 1   MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
           MA+T L P  ++  I ++ T +  QAK+S ++LKE+T+KVYFDVEI GKPAGRIVMGLFG
Sbjct: 1   MATTRLQPSVLILCIAVIGTLALAQAKESQESLKEVTHKVYFDVEIDGKPAGRIVMGLFG 60

Query: 61  KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120
           K V KTA+NFRALCTGEKG+GKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY
Sbjct: 61  KTVSKTADNFRALCTGEKGVGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120

Query: 121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
           GE F DENFK+KHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV
Sbjct: 121 GESFADENFKIKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180

Query: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
           YK+EAEG Q+GTPKSKVV+ADSGELPL
Sbjct: 181 YKIEAEGGQSGTPKSKVVIADSGELPL 207

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346469779|gb|AEO34734.1| hypothetical protein [Amblyomma maculatum]

 Score =  355 bits (911), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 170/207 (82%), Positives = 188/207 (90%), Gaps = 5/207 (2%)

Query: 1   MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
           MAS  LL L ++++I     F+ IQAK +  NLKE+T+KVYFD+EI GK AGR+VMGLFG
Sbjct: 1   MASKVLLSLVLIFSI-----FALIQAKATKDNLKEVTHKVYFDIEIDGKSAGRVVMGLFG 55

Query: 61  KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120
            AVPKTAENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+QGGDFTLGDGRGGESIY
Sbjct: 56  NAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTLGDGRGGESIY 115

Query: 121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
           GEKF DENFKLKHTGPG++SMAN+G DTNGSQFFITTVTTSWLDG+HVVFGKVLSGMDV+
Sbjct: 116 GEKFADENFKLKHTGPGVMSMANSGRDTNGSQFFITTVTTSWLDGKHVVFGKVLSGMDVI 175

Query: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
           YKVEAEGRQNGTPKSKVV+ADSGELPL
Sbjct: 176 YKVEAEGRQNGTPKSKVVIADSGELPL 202

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|255569359|ref|XP_002525647.1| cyclophilin, putative [Ricinus communis] gi|223535083|gb|EEF36765.1| cyclophilin, putative [Ricinus communis]

 Score =  355 bits (910), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 169/190 (88%), Positives = 179/190 (94%)

Query: 18  LATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGE 77
             T + IQAK   ++LKEIT+KVYFDVEIAGKPAGR+VMGLFGKAVPKTAENFRALCTGE
Sbjct: 15  FGTLTLIQAKNPKEDLKEITHKVYFDVEIAGKPAGRVVMGLFGKAVPKTAENFRALCTGE 74

Query: 78  KGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPG 137
           KG+GKSGKPLHYKGS FHRIIPSFM+QGGDFTLGDGRGGESIYGEKF DENFKLKHTGPG
Sbjct: 75  KGVGKSGKPLHYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPG 134

Query: 138 LLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKV 197
            LSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYK+EAEGRQ+GTPKSKV
Sbjct: 135 FLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGRQSGTPKSKV 194

Query: 198 VVADSGELPL 207
            +ADSGELPL
Sbjct: 195 TIADSGELPL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450816|ref|XP_004143158.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus] gi|449496575|ref|XP_004160169.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/184 (91%), Positives = 177/184 (96%)

Query: 24  IQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS 83
           IQAKKS +NLKE+T+KVYFDVEI GK AGRI MGLFGKAVPKTAENFRALCTGEKG+G+S
Sbjct: 21  IQAKKSKENLKEVTHKVYFDVEIDGKAAGRIEMGLFGKAVPKTAENFRALCTGEKGVGQS 80

Query: 84  GKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMAN 143
           GKPLHYKGS FHRIIPSFM+QGGDFTLGDGRGGESIYGEKF DENFKLKHTGPGLLSMAN
Sbjct: 81  GKPLHYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMAN 140

Query: 144 AGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
           AG DTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYK+EAEGRQNGTPKSKVV+ADSG
Sbjct: 141 AGSDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGRQNGTPKSKVVIADSG 200

Query: 204 ELPL 207
           ELPL
Sbjct: 201 ELPL 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513449|gb|AFK44786.1| unknown [Lotus japonicus]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/207 (83%), Positives = 189/207 (91%), Gaps = 3/207 (1%)

Query: 1   MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
           MA T  L   +L  ++L AT + IQAKKS ++LKE+T+KV+FDVEI GK AGRIVMGL+G
Sbjct: 1   MAKTTSL---LLCTVLLFATLAPIQAKKSKEDLKEVTHKVFFDVEIDGKAAGRIVMGLYG 57

Query: 61  KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY 120
           K VPKTAENFRALCTGEKGIGKSGKPLH+KGS+FHRIIPSFM+QGGDFT G+G GGESIY
Sbjct: 58  KTVPKTAENFRALCTGEKGIGKSGKPLHFKGSSFHRIIPSFMIQGGDFTQGNGMGGESIY 117

Query: 121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
           GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV
Sbjct: 118 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 177

Query: 181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
           YK+EAEG Q+GTPKSKVV+ADSGELPL
Sbjct: 178 YKMEAEGNQSGTPKSKVVIADSGELPL 204

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341575696|gb|AEK80448.1| peptidyl-prolyl cis-trans isomerase [Carica papaya]

 Score =  353 bits (905), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 169/195 (86%), Positives = 181/195 (92%)

Query: 13  WAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRA 72
           W + L  T + IQAKKS+++LKEITNKVYFD+EI GKPAGRIVMGLFGK VPKT ENFRA
Sbjct: 14  WFLALFGTLTLIQAKKSNEDLKEITNKVYFDIEIDGKPAGRIVMGLFGKTVPKTVENFRA 73

Query: 73  LCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLK 132
           LCTGEKGIGK+GKPLHYKGST HRIIPSFM+QGGDFT G+G GGESIYGEKF DENFKLK
Sbjct: 74  LCTGEKGIGKNGKPLHYKGSTLHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLK 133

Query: 133 HTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT 192
           HTGPGLLSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKV+SGMDVVYKVEAEGRQ+GT
Sbjct: 134 HTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVVSGMDVVYKVEAEGRQSGT 193

Query: 193 PKSKVVVADSGELPL 207
           PKSKVV+ADSGELPL
Sbjct: 194 PKSKVVIADSGELPL 208

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
TAIR|locus:2178863	204	ROC7 "rotamase CYP 7" [Arabido	0.985	1.0	0.787	5e-83
TAIR|locus:2045663	201	CYP5 "cyclophilin 5" [Arabidop	0.937	0.965	0.761	3e-78
TAIR|locus:2081993	228	AT3G55920 [Arabidopsis thalian	0.855	0.776	0.677	1.1e-70
WB|WBGene00000883	171	cyn-7 [Caenorhabditis elegans	0.806	0.976	0.688	3.8e-62
DICTYBASE|DDB_G0269120	197	cypB "cyclophilin B" [Dictyost	0.922	0.969	0.630	6.2e-62
WB|WBGene00000879	173	cyn-3 [Caenorhabditis elegans	0.811	0.971	0.660	2.5e-58
UNIPROTKB|P52011	173	cyn-3 "Peptidyl-prolyl cis-tra	0.811	0.971	0.660	2.5e-58
WB|WBGene00000878	172	cyn-2 [Caenorhabditis elegans	0.806	0.970	0.646	2e-56
TAIR|locus:2047097	174	AT2G21130 [Arabidopsis thalian	0.806	0.959	0.634	1.1e-55
TAIR|locus:2141747	172	ROC1 "rotamase CYP 1" [Arabido	0.806	0.970	0.640	1.8e-55

TAIR|locus:2178863 ROC7 "rotamase CYP 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 163/207 (78%), Positives = 177/207 (85%)

Query:     1 MASTNLLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFG 60
             MAS+  L   +LW+++LL T S+IQAKKS +NLKEIT+KVYFDVEI GK AGRIVMGLFG
Sbjct:     1 MASSVTL---LLWSLLLLGTLSAIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFG 57

Query:    61 KAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIY 120
             K VPKT ENFRALCTGEKGIGK+GK LHYKGS+FHRIIPSFMLQ            ESIY
Sbjct:    58 KTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIY 117

Query:   121 GEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV 180
             GEKF DENFKLKHTGPG LSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKV++GMDVV
Sbjct:   118 GEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVV 177

Query:   181 YKVEAEGRQNGTPKSKVVVADSGELPL 207
             YKVEAEG Q+GTPKSKVV+ DSGELPL
Sbjct:   178 YKVEAEGNQSGTPKSKVVIVDSGELPL 204

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0048364 "root development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2045663 CYP5 "cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 150/197 (76%), Positives = 169/197 (85%)

Query:    11 MLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENF 70
             +L  + L    +SIQAK   ++LKE+T+KVYFDVEI GK AGR+V+GLFGKAVPKTAENF
Sbjct:     8 LLGTLFLFGAIASIQAK---EDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENF 64

Query:    71 RALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFK 130
             RALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+Q            ESIYG+KF DENFK
Sbjct:    65 RALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFK 124

Query:   131 LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN 190
             LKHTGPG+LSMAN+G DTNGSQFFITTVTTSWLDGRHVVFGKV+ GMDVVYK+EAEG+Q+
Sbjct:   125 LKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQS 184

Query:   191 GTPKSKVVVADSGELPL 207
             GTPKSKVV+ADSGELPL
Sbjct:   185 GTPKSKVVIADSGELPL 201

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2081993 AT3G55920 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
 Identities = 120/177 (67%), Positives = 147/177 (83%)

Query:    31 QNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYK 90
             ++L+ +T+KVYFD++I G PAGRI++GLFG  VPKTAENFR+LCTGEKG+G  GKPL++K
Sbjct:    52 EDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGVGNMGKPLYFK 111

Query:    91 GSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNG 150
             GS+FHRIIP FM+Q            ESIYG+KF DENFKLKHTGPG LSMAN+GPD+NG
Sbjct:   112 GSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGFLSMANSGPDSNG 171

Query:   151 SQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELPL 207
             SQFFITTVTTSWLDG HVVFGKVLSGM+VV K+EA+G+ +G PK+ V++  SGE+ L
Sbjct:   172 SQFFITTVTTSWLDGHHVVFGKVLSGMEVVRKIEAQGQDSGVPKANVIIFASGEVSL 228

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

WB|WBGene00000883 cyn-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 115/167 (68%), Positives = 136/167 (81%)

Query:    39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
             +V+FD+ IAGKP GRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLH+KGS FHRII
Sbjct:     5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRII 64

Query:    99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             P FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV
Sbjct:    65 PEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query:   159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              T+WLDG+HVVFG+V+ G+D+V KVE  G  +GTPKS+ ++AD G+L
Sbjct:   125 KTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

DICTYBASE|DDB_G0269120 cypB "cyclophilin B" [Dictyostelium discoideum (taxid:44689)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 121/192 (63%), Positives = 145/192 (75%)

Query:    15 IVLLATFSSIQAKKSDQNLK-EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRAL 73
             +VL     ++ A  S+     +ITNKV+FD+EI  KPAGRIV GL+GK VPKT ENFRAL
Sbjct:     6 VVLAIVLVTLWAMPSEAGKDPKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRAL 65

Query:    74 CTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKH 133
             CTGEKG+G SGKPLHYK S FHRIIP+FM+Q            ESIYG+KF DENFK+KH
Sbjct:    66 CTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKH 125

Query:   134 TGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTP 193
             + PGLLSMANAGP+TNGSQFFITTV TSWLDGRH VFG+V+ GMD+V  +E+ G Q+GTP
Sbjct:   126 SKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTP 185

Query:   194 KSKVVVADSGEL 205
                  +++SGEL
Sbjct:   186 SKIAKISNSGEL 197

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00000879 cyn-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 111/168 (66%), Positives = 131/168 (77%)

Query:    38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
             +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRI
Sbjct:     4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63

Query:    98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
             IP+FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ T
Sbjct:    64 IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123

Query:   158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
             V T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+L
Sbjct:   124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005623 "cell" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|P52011 cyn-3 "Peptidyl-prolyl cis-trans isomerase 3" [Caenorhabditis elegans (taxid:6239)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 111/168 (66%), Positives = 131/168 (77%)

Query:    38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
             +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRI
Sbjct:     4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63

Query:    98 IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
             IP+FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ T
Sbjct:    64 IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123

Query:   158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
             V T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+L
Sbjct:   124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00000878 cyn-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 108/167 (64%), Positives = 128/167 (76%)

Query:    39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
             KV+FD+ I GK  GRIVM L+   VPKTAENFRALCTGEKG GKSGK LH+KGS FHRII
Sbjct:     5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRII 64

Query:    99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             P FM+Q            ESI+GEKF DENFK KHTGPG+LSMAN G +TNGSQFF+ TV
Sbjct:    65 PEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTV 124

Query:   159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              T+WLDG+HVVFGKV+ GMDVV  +E++G ++G P +  V+AD GE+
Sbjct:   125 KTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

TAIR|locus:2047097 AT2G21130 [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 106/167 (63%), Positives = 127/167 (76%)

Query:    39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
             KV+FD+ I G PAG+IVM L+    PKTAENFRALCTGEKG+G+SGKPLH+KGS+FHR+I
Sbjct:     6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65

Query:    99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             P+FM Q            ESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV
Sbjct:    66 PNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTV 125

Query:   159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VV+AD GE+
Sbjct:   126 KTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEI 172

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2141747 ROC1 "rotamase CYP 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 107/167 (64%), Positives = 126/167 (75%)

Query:    39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
             KVYFD+ I G+PAGRIVM L+    P+TAENFRALCTGEKG+G +GKPLH+KGS FHR+I
Sbjct:     5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVI 64

Query:    99 PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             P+FM Q            ESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV
Sbjct:    65 PNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTV 124

Query:   159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VVVAD G+L
Sbjct:   125 KTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009585 "red, far-red light phototransduction" evidence=IGI

GO:0009704 "de-etiolation" evidence=IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0009785 "blue light signaling pathway" evidence=IGI

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0007165 "signal transduction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P18253	CYPH_SCHPO	5, ., 2, ., 1, ., 8	0.6547	0.7777	0.9938	yes	no
Q39613	CYPH_CATRO	5, ., 2, ., 1, ., 8	0.6886	0.8067	0.9709	N/A	no
P0CP78	PPIB_CRYNJ	5, ., 2, ., 1, ., 8	0.6124	0.9758	0.8744	yes	no
P0CP79	PPIB_CRYNB	5, ., 2, ., 1, ., 8	0.6124	0.9758	0.8744	N/A	no
Q9TW32	PPIB_DICDI	5, ., 2, ., 1, ., 8	0.6769	0.9275	0.9746	yes	no
P35627	CYPX_USEUD	5, ., 2, ., 1, ., 8	0.7125	0.7971	0.9763	N/A	no
P0C1I7	CYP5_RHIO9	5, ., 2, ., 1, ., 8	0.6826	0.8067	0.9488	N/A	no
P0C1I0	PPIB2_RHIO9	5, ., 2, ., 1, ., 8	0.6041	0.8888	0.8803	N/A	no
Q26551	PPIB_SCHMA	5, ., 2, ., 1, ., 8	0.5966	0.8599	0.8356	N/A	no
P52010	CYP2_CAEEL	5, ., 2, ., 1, ., 8	0.7005	0.8067	0.9709	no	no
P14832	CYPH_YEAST	5, ., 2, ., 1, ., 8	0.6666	0.7777	0.9938	yes	no
O49886	CYPH_LUPLU	5, ., 2, ., 1, ., 8	0.6826	0.8067	0.9709	N/A	no
P21568	CYPH_SOLLC	5, ., 2, ., 1, ., 8	0.7065	0.8067	0.9766	N/A	no
P21569	CYPH_MAIZE	5, ., 2, ., 1, ., 8	0.7065	0.8067	0.9709	N/A	no
P0C1I8	CYP6_RHIO9	5, ., 2, ., 1, ., 8	0.6586	0.8067	0.9488	N/A	no
P30405	PPIF_HUMAN	5, ., 2, ., 1, ., 8	0.6506	0.7681	0.7681	yes	no
P30404	PPIF_BOVIN	5, ., 2, ., 1, ., 8	0.6506	0.7681	0.7644	yes	no
Q8LDP4	CP19D_ARATH	5, ., 2, ., 1, ., 8	0.7989	0.9468	0.9751	no	no
Q6C4W6	PPIB_YARLI	5, ., 2, ., 1, ., 8	0.6082	0.8840	0.8026	yes	no
Q9SP02	CP20A_ARATH	5, ., 2, ., 1, ., 8	0.8756	0.8937	0.9068	yes	no
P25007	PPIA_DROME	5, ., 2, ., 1, ., 8	0.6407	0.7729	0.7048	yes	no
P73789	PPI2_SYNY3	5, ., 2, ., 1, ., 8	0.6529	0.8212	0.9941	N/A	no
P52011	CYP3_CAEEL	5, ., 2, ., 1, ., 8	0.7142	0.8115	0.9710	no	no
P52015	CYP7_CAEEL	5, ., 2, ., 1, ., 8	0.7425	0.8067	0.9766	yes	no
P24525	CYPH_BRANA	5, ., 2, ., 1, ., 8	0.6823	0.8212	0.9941	N/A	no
Q01490	PPIB_ORPSP	5, ., 2, ., 1, ., 8	0.6262	0.8888	0.9064	N/A	no
P24369	PPIB_MOUSE	5, ., 2, ., 1, ., 8	0.6436	0.8019	0.7685	yes	no
P24368	PPIB_RAT	5, ., 2, ., 1, ., 8	0.6379	0.8019	0.7685	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX3737 RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8;; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	207
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-113
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	9e-99
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	2e-74
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-62
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	3e-59
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	1e-57
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	3e-49
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	6e-49
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	7e-44
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	1e-41
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	2e-38
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	5e-28
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	2e-27
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	5e-18
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	7e-14
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	8e-14
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	4e-08

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  319 bits (820), Expect = e-113
 Identities = 128/165 (77%), Positives = 140/165 (84%), Gaps = 2/165 (1%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I G+PAGRIVM LF   VPKTAENFRALCTGEKG G  GKP  YKGSTFHR+I
Sbjct: 2   KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG--GKPFGYKGSTFHRVI 59

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM+QGGDFT G+G GG+SIYGEKFPDENFKLKHTGPGLLSMANAGP+TNGSQFFITTV
Sbjct: 60  PDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTV 119

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
            T WLDG+HVVFGKV+ GMDVV K+E  G  NG PK KVV+AD G
Sbjct: 120 KTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  283 bits (726), Expect = 9e-99
 Identities = 118/167 (70%), Positives = 129/167 (77%), Gaps = 1/167 (0%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I   PAGRIV  LF    PKTAENFRALC G+K +G SGK LHYKGS FHRII
Sbjct: 17  KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDK-VGSSGKNLHYKGSIFHRII 75

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGD T  +G GGESIYG KF DENFKLKH  PGLLSMANAGP+TNGSQFFITTV
Sbjct: 76  PQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTV 135

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              WLDG+HVVFGKV+ GM+VV  +E EG Q+G PK  VVV D GEL
Sbjct: 136 PCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  222 bits (566), Expect = 2e-74
 Identities = 102/169 (60%), Positives = 116/169 (68%), Gaps = 6/169 (3%)

Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FDV I G PAGRI M LF    PKTAENFR  CTGE    K+G P  YKG  FHR+I 
Sbjct: 21  VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGE--FRKAGLPQGYKGCQFHRVIK 78

Query: 100 SFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM+QGGDF  GDG G  SIYG KF DENF  KHTGPGLLSMAN+GP+TNG QFFIT   
Sbjct: 79  DFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAK 138

Query: 160 TSWLDGRHVVFGKVL-SGMDVVYKVE--AEGRQNGTPKSKVVVADSGEL 205
             WLD +HVVFG+VL  G+ VV K+E  A G  N  PK   V+++ GE+
Sbjct: 139 CDWLDNKHVVFGRVLGDGLLVVRKIENVATG-PNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  190 bits (485), Expect = 2e-62
 Identities = 84/152 (55%), Positives = 98/152 (64%), Gaps = 14/152 (9%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           GRIV+ L+G   PKT ENF +L  G            Y G+TFHR+IP FM+QGGD T  
Sbjct: 7   GRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPT-- 54

Query: 112 DGRGGESIYGEKFPDENFKLK-HTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
              GG S  G KFPDENF LK H   G LSMANAGP+TNGSQFFITT  T  LDG+H VF
Sbjct: 55  GTGGGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVF 114

Query: 171 GKVLSGMDVVYKVE-AEGRQNGTPKSKVVVAD 201
           GKV+ GMDVV K+E  +  +NG P   V ++D
Sbjct: 115 GKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  182 bits (465), Expect = 3e-59
 Identities = 69/172 (40%), Positives = 86/172 (50%), Gaps = 22/172 (12%)

Query: 43  DVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 102
            V +     G I + L+    PKT  NF  L           K   Y G+ FHR+IP FM
Sbjct: 1   TVIL-ETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFM 49

Query: 103 LQGGDFTLGDGRGGESIYGEKFPDENFKLKH--TGPGLLSMANAG-PDTNGSQFFITTVT 159
           +QGGD T GDG GG       F DENF L       G LSMA AG P++NGSQFFIT V 
Sbjct: 50  IQGGDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVD 106

Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVVADSGELP 206
             +LDG++ VFG+V+ GMDVV K++       G     P   V +     + 
Sbjct: 107 NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIVE 158

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  177 bits (452), Expect = 1e-57
 Identities = 69/161 (42%), Positives = 86/161 (53%), Gaps = 18/161 (11%)

Query: 41  YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPS 100
           + D+       GRIV+ LFG   PKT ENF +LC  +KG         Y G+ FHR+IP 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG--------FYDGTIFHRVIPG 47

Query: 101 FMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTT 160
           FM+QGGD T G G GG+       PDE         G LSMA +GP++ GSQFFIT    
Sbjct: 48  FMIQGGDPT-GPGTGGK----RSIPDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDA 102

Query: 161 SWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVAD 201
             LDG + VFG+V+ GMDVV K+E        P   V +  
Sbjct: 103 PHLDGGYTVFGRVVEGMDVVEKIEKVETDGDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  157 bits (398), Expect = 3e-49
 Identities = 71/134 (52%), Positives = 89/134 (66%), Gaps = 12/134 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + LF +  PKT ENF           ++G   +Y  + FHR+I  FM+Q GD   G
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA-------RNG---YYNNTIFHRVIKGFMIQTGD-PTG 55

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
           DG GGESI+G++F DE +  LKH  P  LSMANAGP+TNGSQFFITTV T WLD +H VF
Sbjct: 56  DGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVF 115

Query: 171 GKVLSGMDVVYKVE 184
           G+V+ GMDVV ++E
Sbjct: 116 GRVVKGMDVVQRIE 129

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  156 bits (395), Expect = 6e-49
 Identities = 74/149 (49%), Positives = 94/149 (63%), Gaps = 12/149 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + L+    PKT +NF  L    +G        +Y G+ FHR+I  FM+QGGD T G
Sbjct: 7   GEITLELYWNHAPKTCKNFYELAK--RG--------YYNGTIFHRLIKDFMIQGGDPT-G 55

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            GRGG SIYG+KF DE + +LKHTG G+LSMANAGP+TNGSQFFIT   T WLDG+H +F
Sbjct: 56  TGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIF 115

Query: 171 GKVLSGMDVVYKVEAEGRQNGTPKSKVVV 199
           G+V  GM V+  +     Q   P  +V +
Sbjct: 116 GRVSKGMKVIENMVEVQTQTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  143 bits (363), Expect = 7e-44
 Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 13/153 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G + + L     PK  ENF  LC  +KG        +Y G+ FHR I +FM+QGGD T G
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG--------YYDGTIFHRSIRNFMIQGGDPT-G 57

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            GRGGESI+G+ F DE    L H G G+LSMAN+GP+TNGSQFFIT  +   LDG+H VF
Sbjct: 58  TGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVF 117

Query: 171 GKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADS 202
           G+V+ G++ +  +E         PK ++ + D+
Sbjct: 118 GRVVGGLETLEAMENVPDPGTDRPKEEIKIEDT 150

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  137 bits (347), Expect = 1e-41
 Identities = 69/152 (45%), Positives = 89/152 (58%), Gaps = 13/152 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + LF    PK  ENF ALC        SG   +Y G  FHR I  FM+Q GD T G
Sbjct: 10  GDIKIELFCDDCPKACENFLALCA-------SG---YYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 112 DGRGGESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            G+GGESI+G+KF DE  + LKH   G++SMAN GP+TNGSQFFIT      LDG++ VF
Sbjct: 59  TGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVF 118

Query: 171 GKVLSGMDVVYKVEA-EGRQNGTPKSKVVVAD 201
           GKV+ G + +  +E     +   P  ++ + D
Sbjct: 119 GKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  130 bits (328), Expect = 2e-38
 Identities = 57/124 (45%), Positives = 73/124 (58%), Gaps = 12/124 (9%)

Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTL 110
           AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++QGGD T 
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT- 62

Query: 111 GDGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
           G G GGESIYGE F DE + +L+    GL+ MANAG D+NGSQFF T      L+ +H +
Sbjct: 63  GTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTL 122

Query: 170 FGKV 173
           FGKV
Sbjct: 123 FGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  105 bits (264), Expect = 5e-28
 Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 7/172 (4%)

Query: 37  TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFH 95
           + + + D+ I    AGR+V  LF   VP+T ENFRAL TG  GI   +G  L Y  +  H
Sbjct: 52  SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVH 111

Query: 96  RIIPSFMLQGGDFTLGDGRG-GESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
            +            LG+      S  G    DE ++ +HT  GLL+M + GP T+GS F 
Sbjct: 112 HVDR----NNNIIVLGELDSFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFG 167

Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGEL 205
           IT   +  LD + VVFGK +  + ++ K+E+      G P   V V+  G L
Sbjct: 168 ITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGAL 219

Length = 249

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  102 bits (255), Expect = 2e-27
 Identities = 53/141 (37%), Positives = 72/141 (51%), Gaps = 20/141 (14%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G +V+ LF    P    NF  LC          K  +Y    F+ +   F+ Q GD T G
Sbjct: 7   GDLVIDLFTDECPLACLNFLKLC----------KLKYYNFCLFYNVQKDFIAQTGDPT-G 55

Query: 112 DGRGGESIYGEKFPDE--------NFKLKHTGPGLLSMANAGPDTNGSQFFIT-TVTTSW 162
            G GGESIY + +  +           LKH+  G +SM NAG + NGSQF+IT      +
Sbjct: 56  TGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDY 115

Query: 163 LDGRHVVFGKVLSGMDVVYKV 183
           LDG+H VFG+V+ G DV+ K+
Sbjct: 116 LDGKHTVFGQVVEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 76.7 bits (189), Expect = 5e-18
 Identities = 50/142 (35%), Positives = 65/142 (45%), Gaps = 23/142 (16%)

Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFT- 109
            G IV+ L+    P T ENF A     KG         Y  + FHR+I  F++QGG FT 
Sbjct: 6   LGDIVVELYDDKAPITVENFLAYV--RKG--------FYDNTIFHRVISGFVIQGGGFTP 55

Query: 110 -LGDGRGGESIYGEKFPDENFKLKHTGPGLLSMA-NAGPDTNGSQFFITTVTTSWLD--- 164
            L      + I  E        L +T  G ++MA    PD+  SQFFI     + LD   
Sbjct: 56  DLAQKETLKPIKNEA----GNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQN 110

Query: 165 --GRHVVFGKVLSGMDVVYKVE 184
               + VFG+V  GMDVV K+ 
Sbjct: 111 EQWGYTVFGEVTEGMDVVDKIA 132

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 66.0 bits (161), Expect = 7e-14
 Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 31/164 (18%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G IV+  F    P+T +NF   C       + G    Y  + FHR+I  FM+QGG F  G
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-------REG---FYNNTIFHRVINGFMIQGGGFEPG 58

Query: 112 DGRGG--ESIYGEKFPDENFKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLDGR-- 166
             +    E I  E     N  LK+T  G L+MA    P +  +QFFI  V   +L+    
Sbjct: 59  MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113

Query: 167 ------HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVV 199
                 + VF +V+ GMDVV K++       G     PK  V++
Sbjct: 114 SLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

Length = 164

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 66.8 bits (163), Expect = 8e-14
 Identities = 55/181 (30%), Positives = 74/181 (40%), Gaps = 52/181 (28%)

Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTL 110
           AG I + L  +  P + +NF            SG    Y  +TFHR+IP FM+QGG FT 
Sbjct: 37  AGNIELELNSQKAPVSVKNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFT- 85

Query: 111 GDGRGGESIYGEKFPDENFKLKHTGP--------------GLLSMA-NAGPDTNGSQFFI 155
                           E  + K   P              G ++MA  A  D+  SQFFI
Sbjct: 86  ----------------EQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFI 129

Query: 156 TTVTTSWLD-GR----HVVFGKVLSGMDVVYKV-----EAEGRQNGTPKSKVVVADSGEL 205
                ++LD G+    + VFGKV+ GMDV  K+        G     P   VV+  +  L
Sbjct: 130 NVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL 189

Query: 206 P 206
           P
Sbjct: 190 P 190

Length = 190

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 49/167 (29%), Positives = 66/167 (39%), Gaps = 46/167 (27%)

Query: 53  RIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGD----- 107
            IV  L G   P TA NF  L   E+G         Y G  FHR+   F++Q GD     
Sbjct: 10  TIV--LDGYNAPVTAGNFVDLV--ERGF--------YDGMEFHRVEGGFVVQTGDPQGKN 57

Query: 108 FTLGDGRGGES---------------IYGEKF-----PDENFKLKHTGPGLLSMANAGPD 147
               D   G+S               +YG+        DE   L     G ++MA    D
Sbjct: 58  PGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFD 117

Query: 148 TNG--SQFFI-------TTVTTSWLDGRHVVFGKVLSGMDVVYKVEA 185
            N   SQFF        T    + LDGR+ VFG V  G+D++ +++ 
Sbjct: 118 PNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.73
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.56
PRK00969	508	hypothetical protein; Provisional	96.55
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.21
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.07
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	95.99
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.18
PRK00969	508	hypothetical protein; Provisional	93.37
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	90.81
PF04126	120	Cyclophil_like: Cyclophilin-like; InterPro: IPR007	83.21

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-56  Score=347.57  Aligned_cols=173  Identities=71%  Similarity=1.182  Sum_probs=164.2

Q ss_pred             cccccccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhc-CCCCCCCCCCcccccCCEEEEeecCceeEec
Q 028574           28 KSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCT-GEKGIGKSGKPLHYKGSTFHRIIPSFMLQGG  106 (207)
Q Consensus        28 ~~~~~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~-~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G  106 (207)
                      ..+.+.|+++++|||||++++...|||+|+||++.+|+||+||.+||. +.+++       .|.+++||||+||||||||
T Consensus        30 ~~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~-------gY~gS~FhRVi~nfmIQGG  102 (217)
T KOG0880|consen   30 KKYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGY-------GYKGSKFHRVIPNFMIQGG  102 (217)
T ss_pred             cccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCc-------ccCCceeeeeecCceeecC
Confidence            345677899999999999999999999999999999999999999998 66665       4999999999999999999


Q ss_pred             cCCCCCCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHh-
Q 028574          107 DFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-  185 (207)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~-  185 (207)
                      |++.+++.++.++||+.++||++.++|+++|.||||+.||+++|||||||+...++||++|+|||+|++|||++.+|+. 
T Consensus       103 d~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~  182 (217)
T KOG0880|consen  103 DFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENV  182 (217)
T ss_pred             ccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999995 


Q ss_pred             CCCCCCCcccceEEeeeeeecC
Q 028574          186 EGRQNGTPKSKVVVADSGELPL  207 (207)
Q Consensus       186 ~~~~~~~P~~~i~I~~cg~l~~  207 (207)
                      ..+++++|.++++|.+||+|++
T Consensus       183 ~TD~~dkP~e~v~I~~~g~l~~  204 (217)
T KOG0880|consen  183 KTDERDKPLEDVVIANCGELPV  204 (217)
T ss_pred             ccCCCCCccccEEEeecCcccc
Confidence            4578899999999999999975

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.9e-56  Score=374.94  Aligned_cols=171  Identities=65%  Similarity=1.099  Sum_probs=163.8

Q ss_pred             cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCC-CCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~-~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      .+++|||||++++.+.|||+||||.|.||+||+||+.||+|++|.+ .+++.+.|.|+.||||+++|||||||+..++|+
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt   86 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT   86 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence            5789999999999999999999999999999999999999999964 578999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCc
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTP  193 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P  193 (207)
                      ||++|||..++||++.++|+++++||||+.|||++|||||||+.+.|||||+|+|||+||+|++|++.|+... +++.+|
T Consensus        87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP  166 (372)
T KOG0546|consen   87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP  166 (372)
T ss_pred             CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999665 555699


Q ss_pred             ccceEEeeeeeec
Q 028574          194 KSKVVVADSGELP  206 (207)
Q Consensus       194 ~~~i~I~~cg~l~  206 (207)
                      ..+|+|.+||+|.
T Consensus       167 ~~dV~I~dCGel~  179 (372)
T KOG0546|consen  167 LADVVISDCGELV  179 (372)
T ss_pred             ccceEeccccccc
Confidence            9999999999984

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=5.1e-49  Score=314.80  Aligned_cols=169  Identities=69%  Similarity=1.123  Sum_probs=156.0

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      ++++|||+++++++.|+|+||||.+.||++|+||++||+++..+. .++..+|+++.||||+|+++||+||+..+.+.++
T Consensus        15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g   93 (183)
T PTZ00060         15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG   93 (183)
T ss_pred             CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence            678999999999999999999999999999999999998765421 3467799999999999999999999876777888


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK  196 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~  196 (207)
                      .++++..+++|...++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++.++++++|.++
T Consensus        94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~  173 (183)
T PTZ00060         94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKP  173 (183)
T ss_pred             CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCC
Confidence            88888889899888899889999999999999999999999999999999999999999999999999888888999999


Q ss_pred             eEEeeeeeec
Q 028574          197 VVVADSGELP  206 (207)
Q Consensus       197 i~I~~cg~l~  206 (207)
                      |+|.+||+|.
T Consensus       174 v~I~~cg~~~  183 (183)
T PTZ00060        174 VVVTDCGELQ  183 (183)
T ss_pred             eEEEEeEEcC
Confidence            9999999983

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=5.2e-49  Score=309.96  Aligned_cols=164  Identities=77%  Similarity=1.296  Sum_probs=151.6

Q ss_pred             ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574           38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE  117 (207)
Q Consensus        38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~  117 (207)
                      |++|||+.+++++.|+|+||||.+.||++|+||++||++++++++  +..+|+++.|||++|+|+||+||+..+++.++.
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~   78 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK   78 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence            579999999999999999999999999999999999987665432  445899999999999999999998767777888


Q ss_pred             cccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccce
Q 028574          118 SIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKV  197 (207)
Q Consensus       118 ~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~i  197 (207)
                      ++++..+++|...++|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|+.+|
T Consensus        79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i  158 (164)
T cd01926          79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV  158 (164)
T ss_pred             cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence            88888899998889998999999999999999999999999999999999999999999999999998887789999999


Q ss_pred             EEeeee
Q 028574          198 VVADSG  203 (207)
Q Consensus       198 ~I~~cg  203 (207)
                      +|.+||
T Consensus       159 ~I~~cG  164 (164)
T cd01926         159 VIADCG  164 (164)
T ss_pred             EEEECC
Confidence            999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-48  Score=288.84  Aligned_cols=169  Identities=59%  Similarity=1.006  Sum_probs=160.1

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      +.++.||||+++++.+.|||.||||.|.+|++++||.++|+|+--  +.++..-|+++.|||++++|||||||+..++|.
T Consensus         8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt   85 (177)
T KOG0879|consen    8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_pred             CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceecCCCc
Confidence            447899999999999999999999999999999999999998743  456777899999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCc
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTP  193 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P  193 (207)
                      +..++|+..++||++.++|..+|++|||+++++++|.|||||...+.+||++|+|||||++|+.++++|+.+++ .|++|
T Consensus        86 G~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP  165 (177)
T KOG0879|consen   86 GVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP  165 (177)
T ss_pred             eEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998875 78999


Q ss_pred             ccceEEeeeeee
Q 028574          194 KSKVVVADSGEL  205 (207)
Q Consensus       194 ~~~i~I~~cg~l  205 (207)
                      +.+|.|..||++
T Consensus       166 Kl~v~i~qCGem  177 (177)
T KOG0879|consen  166 KLPVVIVQCGEM  177 (177)
T ss_pred             CCcEEEeecccC
Confidence            999999999974

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=4.1e-47  Score=304.31  Aligned_cols=167  Identities=60%  Similarity=1.016  Sum_probs=150.8

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      .+++|||+.+++++.|||+||||.+.||++|+||++||+++..  ..+....|+++.||||+++++||+||+..+++.++
T Consensus        18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~   95 (186)
T PLN03149         18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC   95 (186)
T ss_pred             CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence            5789999999999999999999999999999999999987542  11122349999999999999999999876778888


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEE-eCHHHHHHHHhCCC-CCCCcc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL-SGMDVVYKVEAEGR-QNGTPK  194 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi-~G~~vld~I~~~~~-~~~~P~  194 (207)
                      .++++..+++|....+|+++|+|+|++.++++++|||||++++.|+||++|+|||||+ +|||||++|+..++ ++++|.
T Consensus        96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~  175 (186)
T PLN03149         96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK  175 (186)
T ss_pred             ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence            8888888999988888999999999999999999999999999999999999999999 79999999997765 779999


Q ss_pred             cceEEeeeeee
Q 028574          195 SKVVVADSGEL  205 (207)
Q Consensus       195 ~~i~I~~cg~l  205 (207)
                      .+|+|.+||++
T Consensus       176 ~~i~I~~cG~~  186 (186)
T PLN03149        176 LACVISECGEM  186 (186)
T ss_pred             CCeEEEeCEeC
Confidence            99999999985

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=7.7e-47  Score=312.57  Aligned_cols=169  Identities=35%  Similarity=0.528  Sum_probs=152.1

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCC-CCCcccccCCEEEEeecC-ceeEeccCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPS-FMLQGGDFTLG  111 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~-~~k~~~Y~g~~f~rv~~~-~~iq~G~~~~~  111 (207)
                      +..+++||||+.+++.+.|+|+||||.+.||++|+||++||+|+++.+. .++..+|+++.||||+++ ++||+||+.. 
T Consensus        49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~-  127 (249)
T PTZ00221         49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS-  127 (249)
T ss_pred             CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence            4568999999999999999999999999999999999999998876542 344556999999999986 8999999763 


Q ss_pred             CCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCC
Q 028574          112 DGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQN  190 (207)
Q Consensus       112 ~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~  190 (207)
                         .+..++|..+++|...++|+++|+|+|++.++++++||||||+++.|+||++|+|||||++|||||++|+..+ +++
T Consensus       128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~  204 (249)
T PTZ00221        128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV  204 (249)
T ss_pred             ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC
Confidence               2345668889999888999999999999999999999999999999999999999999999999999999776 578


Q ss_pred             CCcccceEEeeeeeec
Q 028574          191 GTPKSKVVVADSGELP  206 (207)
Q Consensus       191 ~~P~~~i~I~~cg~l~  206 (207)
                      ++|..+|+|.+||+|+
T Consensus       205 grP~~~V~I~~Cgvl~  220 (249)
T PTZ00221        205 GRPLLPVTVSFCGALT  220 (249)
T ss_pred             CCCCCCeEEEECeEec
Confidence            9999999999999986

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-44  Score=280.21  Aligned_cols=145  Identities=47%  Similarity=0.781  Sum_probs=127.9

Q ss_pred             CeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCC
Q 028574           48 GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDE  127 (207)
Q Consensus        48 ~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e  127 (207)
                      .|+.|+|+||||++.||+||+||++||          +.+||+|+.||||+++|||||||+..+++.+++   +..+++|
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~----------~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E   71 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDE   71 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHH----------HcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccc
Confidence            378999999999999999999999999          455899999999999999999999976677776   4788999


Q ss_pred             CCCCccCC--CcEEEeeecC-CCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCC-----CCCcccceEE
Q 028574          128 NFKLKHTG--PGLLSMANAG-PDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-----NGTPKSKVVV  199 (207)
Q Consensus       128 ~~~~~h~~--~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~~~i~I  199 (207)
                      +....|.+  +|+|||||.+ |++++|||||++.+.|+||++|+|||+|++|||+||+|++..+.     ...|..+++|
T Consensus        72 ~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i  151 (158)
T COG0652          72 NFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI  151 (158)
T ss_pred             ccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEE
Confidence            88777776  9999999998 99999999999999999999999999999999999999975433     2456677888


Q ss_pred             eeeeee
Q 028574          200 ADSGEL  205 (207)
Q Consensus       200 ~~cg~l  205 (207)
                      .+..++
T Consensus       152 ~~~~~~  157 (158)
T COG0652         152 LSVKIV  157 (158)
T ss_pred             eeeeee
Confidence            776654

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-45  Score=270.52  Aligned_cols=152  Identities=49%  Similarity=0.856  Sum_probs=140.9

Q ss_pred             ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574           38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE  117 (207)
Q Consensus        38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~  117 (207)
                      +.|+++     |++|.|++|||-+.||++|.||.+|+          |.+||+|+.||||+++|+|||||++ ++|.++.
T Consensus        10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPT-GTGRGGa   73 (164)
T KOG0881|consen   10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPT-GTGRGGA   73 (164)
T ss_pred             CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCC-CCCCCcc
Confidence            456666     88999999999999999999999999          6679999999999999999999998 8899999


Q ss_pred             cccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhC-CCCCCCccc
Q 028574          118 SIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAE-GRQNGTPKS  195 (207)
Q Consensus       118 ~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~-~~~~~~P~~  195 (207)
                      ++||..++||.+ .++|..+|.++||+.+|++++|||||||.+.++||++|++||||..||+|+.++..+ .+.+++|+.
T Consensus        74 SIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~  153 (164)
T KOG0881|consen   74 SIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPID  153 (164)
T ss_pred             ccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCcc
Confidence            999999999966 689999999999999999999999999999999999999999999999999999855 566799999


Q ss_pred             ceEEeeeeee
Q 028574          196 KVVVADSGEL  205 (207)
Q Consensus       196 ~i~I~~cg~l  205 (207)
                      +++|.++-.+
T Consensus       154 ~~kIika~~~  163 (164)
T KOG0881|consen  154 EVKIIKAYPS  163 (164)
T ss_pred             ceeeEeeecC
Confidence            9999987554

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=1e-43  Score=278.41  Aligned_cols=147  Identities=46%  Similarity=0.786  Sum_probs=135.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .++|+++.|||++|++++|+||+. +++.++.++++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~   74 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCK----------KGYYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF   74 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHh----------cCccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence            679999999999999999999999993          448999999999999999999986 667788888888898886


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeeeeeec
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGELP  206 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~cg~l~  206 (207)
                      . .++|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|+..+ +++++|+++|+|.+|+++.
T Consensus        75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923          75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            4 5788899999999999999999999999999999999999999999999999999765 5779999999999999873

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=6.4e-44  Score=277.94  Aligned_cols=143  Identities=47%  Similarity=0.765  Sum_probs=131.7

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .+||+++.|||++|+|++||||+. +++.++.++++..+++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   75 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCA----------SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF   75 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHh----------cCccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence            789999999999999999999999994          348999999999999999999986 567777788888898887


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADS  202 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~c  202 (207)
                      . .++|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|++.+ +++++|..+|+|.+|
T Consensus        76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~  151 (153)
T cd01928          76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV  151 (153)
T ss_pred             ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence            5 5788889999999999999999999999999999999999999999999999999765 477999999999998

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.2e-43  Score=275.10  Aligned_cols=142  Identities=51%  Similarity=0.847  Sum_probs=130.8

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |++|+|+||||.+.||++|+||++||+          .+||+++.|||++|+|++|+||+. +++.++.++++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   72 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHAR----------NGYYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF   72 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence            679999999999999999999999994          448999999999999999999986 667778888888899887


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVAD  201 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~  201 (207)
                      . .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|+..+ +++++|.++|+|.+
T Consensus        73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            6 7888889999999999999999999999999999999999999999999999999776 56799999999975

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=1.3e-43  Score=274.15  Aligned_cols=142  Identities=51%  Similarity=0.872  Sum_probs=130.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||.+.||++|+||++||+          .+||+++.|||++|+|++|||++. +++.++.++++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~----------~g~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~   72 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAK----------RGYYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI   72 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHh----------cCCcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence            779999999999999999999999994          448999999999999999999986 566777778888888885


Q ss_pred             -CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccceEEee
Q 028574          129 -FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVAD  201 (207)
Q Consensus       129 -~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~i~I~~  201 (207)
                       ..++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|..+|+|.+
T Consensus        73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~  146 (146)
T cd01922          73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK  146 (146)
T ss_pred             ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence             4688888999999999999999999999999999999999999999999999999988777899999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=7.5e-43  Score=280.44  Aligned_cols=145  Identities=33%  Similarity=0.520  Sum_probs=124.0

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||          +.+||+|+.|||++|+|++|||++....+   ...++..+++|.
T Consensus        35 T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~  101 (190)
T PRK10903         35 TSAGNIELELNSQKAPVSVKNFVDYV----------NSGFYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEA  101 (190)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcc
Confidence            67999999999999999999999999          44589999999999999999998763321   122345677776


Q ss_pred             CCCccCCCcEEEeeecC-CCCCCceEEEecCCCCCCCC-----CccEEEEEEeCHHHHHHHHhCCCC-----CCCcccce
Q 028574          129 FKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLDG-----RHVVFGKVLSGMDVVYKVEAEGRQ-----NGTPKSKV  197 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld~-----~~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~~~i  197 (207)
                      ....|+.+|+|+|++.+ +++++|||||++++.++||+     +|+|||+|++|||||++|+..+++     +++|..+|
T Consensus       102 ~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v  181 (190)
T PRK10903        102 DNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPV  181 (190)
T ss_pred             cccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCe
Confidence            55556779999999965 89999999999999999984     899999999999999999977653     47999999


Q ss_pred             EEeeeeeec
Q 028574          198 VVADSGELP  206 (207)
Q Consensus       198 ~I~~cg~l~  206 (207)
                      +|.+|++++
T Consensus       182 ~I~~~~v~~  190 (190)
T PRK10903        182 VILSAKVLP  190 (190)
T ss_pred             EEEEEEEeC
Confidence            999999874

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=5e-43  Score=276.40  Aligned_cols=147  Identities=39%  Similarity=0.634  Sum_probs=129.1

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccC-------
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYG-------  121 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~-------  121 (207)
                      |+.|+|+||||.+.||++|+||++||+          .++|+++.|||++++++|||||+. +++.++.++++       
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~----------~~~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~   72 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCK----------LKYYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA   72 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHh----------cCCcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence            779999999999999999999999994          348999999999999999999986 55566655543       


Q ss_pred             CCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCC-CCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceE
Q 028574          122 EKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVT-TSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVV  198 (207)
Q Consensus       122 ~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~-~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~  198 (207)
                      ..+++|.. .++|+.+|+|+|++.++++++|||||++++ .++||++|+|||||++|||||++|+... +++++|+.+|+
T Consensus        73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~  152 (166)
T cd01921          73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR  152 (166)
T ss_pred             cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence            23556653 678989999999999999999999999975 7999999999999999999999999665 57799999999


Q ss_pred             Eeeeeeec
Q 028574          199 VADSGELP  206 (207)
Q Consensus       199 I~~cg~l~  206 (207)
                      |.+|++|+
T Consensus       153 I~~~~i~~  160 (166)
T cd01921         153 IKHTHILD  160 (166)
T ss_pred             EEEEEEEC
Confidence            99999984

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5e-44  Score=285.12  Aligned_cols=167  Identities=62%  Similarity=1.035  Sum_probs=161.5

Q ss_pred             ccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574           33 LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        33 ~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      ...-++.+|+++.++....|||+++|..|..|.+++||..||++++|+|       |.|++||||+|.||+||||++.++
T Consensus       132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~n  204 (298)
T KOG0111|consen  132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGN  204 (298)
T ss_pred             hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCC
Confidence            3456789999999999999999999999999999999999999999986       999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCC
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT  192 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~  192 (207)
                      |.++.++||..+.+|++.++|..+|+|||++++++++||||||+.....+||++|+|||.|++||+|+++++..+++.++
T Consensus       205 gtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgk  284 (298)
T KOG0111|consen  205 GTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK  284 (298)
T ss_pred             CCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEeeeeeec
Q 028574          193 PKSKVVVADSGELP  206 (207)
Q Consensus       193 P~~~i~I~~cg~l~  206 (207)
                      |.+.|.|.+||+|.
T Consensus       285 p~qkv~i~~cge~~  298 (298)
T KOG0111|consen  285 PQQKVKIVECGEIE  298 (298)
T ss_pred             cceEEEEEeccccC
Confidence            99999999999974

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=3.3e-41  Score=267.11  Aligned_cols=155  Identities=41%  Similarity=0.675  Sum_probs=137.1

Q ss_pred             cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCC
Q 028574           36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRG  115 (207)
Q Consensus        36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~  115 (207)
                      .+.+|.++     |++|+|+||||.+.||++|+||++||+          .+||+++.|||++|+|++|||++. +++.+
T Consensus         4 ~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~----------~~~Y~~~~f~Rvi~~f~iQgGd~~-~~g~g   67 (171)
T cd01925           4 TTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCL----------EGYYDNTIFHRVVPGFIIQGGDPT-GTGTG   67 (171)
T ss_pred             cccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHh----------cCCCCCCEEEEEcCCcEEEccccC-CCCcc
Confidence            34555555     779999999999999999999999994          448999999999999999999986 66777


Q ss_pred             CccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe-CHHHHHHHHhCC-CCCCC
Q 028574          116 GESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS-GMDVVYKVEAEG-RQNGT  192 (207)
Q Consensus       116 ~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~-G~~vld~I~~~~-~~~~~  192 (207)
                      +.++++..+++|.. .++|+++|+|+|++.++++++|||||++++.++||++|+|||||++ +++++++|+... +++++
T Consensus        68 ~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~  147 (171)
T cd01925          68 GESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDER  147 (171)
T ss_pred             CcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCC
Confidence            88888888988865 5678899999999999999999999999999999999999999994 688899999654 56789


Q ss_pred             cccceEEeeeeeec
Q 028574          193 PKSKVVVADSGELP  206 (207)
Q Consensus       193 P~~~i~I~~cg~l~  206 (207)
                      |.++|+|.+|++++
T Consensus       148 P~~~i~I~~~~i~~  161 (171)
T cd01925         148 PVYPPKITSVEVLE  161 (171)
T ss_pred             cCCCeEEEEEEEEc
Confidence            99999999999874

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-41  Score=288.80  Aligned_cols=158  Identities=42%  Similarity=0.745  Sum_probs=146.6

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      ..+..+-|+.+.++   .|.|.+||++|.+|++|+||++||          +.+||+|+.|||.+++||||||||+ ++|
T Consensus       272 ~rvKkkgyvrl~Tn---~G~lNlELhcd~~P~aceNFI~lc----------~~gYYnnt~FHRsIrnFmiQGGDPT-GTG  337 (518)
T KOG0883|consen  272 TRVKKKGYVRLVTN---HGPLNLELHCDYAPRACENFITLC----------KNGYYNNTIFHRSIRNFMIQGGDPT-GTG  337 (518)
T ss_pred             ccccccceEEEecc---CCceeeEeecCcchHHHHHHHHHH----------hcccccchHHHHHHHHHeeeCCCCC-CCC
Confidence            56677888888755   899999999999999999999999          5569999999999999999999998 899


Q ss_pred             CCCccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCC
Q 028574          114 RGGESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNG  191 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~  191 (207)
                      .||+++||.++.||+. .+.|+.||+||||++||+++||||||+..++.+||++|++||||+.|+++|++|+.++ ++++
T Consensus       338 ~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~D  417 (518)
T KOG0883|consen  338 RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKD  417 (518)
T ss_pred             CCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCC
Confidence            9999999999999976 6999999999999999999999999999999999999999999999999999999765 5679


Q ss_pred             CcccceEEeeeeee
Q 028574          192 TPKSKVVVADSGEL  205 (207)
Q Consensus       192 ~P~~~i~I~~cg~l  205 (207)
                      +|+.+|+|.+.-+.
T Consensus       418 rP~e~I~i~~~~VF  431 (518)
T KOG0883|consen  418 RPKEEIKIEDAIVF  431 (518)
T ss_pred             CcccceEEeeeEEe
Confidence            99999999987653

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=3.9e-40  Score=259.16  Aligned_cols=144  Identities=33%  Similarity=0.560  Sum_probs=120.4

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||          +.+||+++.||||+|+|+||||++..+.+.   ..++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~   72 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA   72 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHH----------hcCCcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcc
Confidence            77999999999999999999999999          444899999999999999999987533221   12345677775


Q ss_pred             CCCccCCCcEEEeeecC-CCCCCceEEEecCCCCCCC-------C-CccEEEEEEeCHHHHHHHHhCCCC-----CCCcc
Q 028574          129 FKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLD-------G-RHVVFGKVLSGMDVVYKVEAEGRQ-----NGTPK  194 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld-------~-~~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~  194 (207)
                      ....|+.+|+|+|++.+ +++++|||||++++.++||       + +|+|||||++|||||++|+..++.     +++|.
T Consensus        73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~  152 (164)
T PRK10791         73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_pred             cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence            44334579999999975 8999999999999988776       3 799999999999999999977653     36999


Q ss_pred             cceEEeeeeee
Q 028574          195 SKVVVADSGEL  205 (207)
Q Consensus       195 ~~i~I~~cg~l  205 (207)
                      .+|+|.+|.+.
T Consensus       153 ~~v~I~~~~i~  163 (164)
T PRK10791        153 EDVIIESVTVS  163 (164)
T ss_pred             CCeEEEEEEEe
Confidence            99999999764

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=2.1e-39  Score=253.09  Aligned_cols=140  Identities=33%  Similarity=0.492  Sum_probs=119.1

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||          +.+||+++.||||+|+|++|||++....+.   ..++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~----------~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~   70 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYV----------RKGFYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA   70 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHH----------hcCCCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence            67999999999999999999999999          344899999999999999999997643222   22345667776


Q ss_pred             CCCccCCCcEEEeeecC-CCCCCceEEEecCCCCCCCC-----CccEEEEEEeCHHHHHHHHhCCCCC-----CCcccce
Q 028574          129 FKLKHTGPGLLSMANAG-PDTNGSQFFITTVTTSWLDG-----RHVVFGKVLSGMDVVYKVEAEGRQN-----GTPKSKV  197 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~~~-~~~~~sqF~I~l~~~~~ld~-----~~~vfG~Vi~G~~vld~I~~~~~~~-----~~P~~~i  197 (207)
                      ....|+.+|+|+|++.+ +++++|||||++++.++||+     +|+|||+|++|||||++|++.++++     ++|..+|
T Consensus        71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v  150 (155)
T cd01920          71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV  150 (155)
T ss_pred             cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence            55556789999999965 89999999999999999995     7999999999999999999776533     5899999


Q ss_pred             EEee
Q 028574          198 VVAD  201 (207)
Q Consensus       198 ~I~~  201 (207)
                      +|.+
T Consensus       151 ~i~~  154 (155)
T cd01920         151 IIES  154 (155)
T ss_pred             EEEE
Confidence            9976

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=5.7e-39  Score=250.16  Aligned_cols=150  Identities=51%  Similarity=0.861  Sum_probs=128.9

Q ss_pred             EEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC-ccc
Q 028574           41 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG-ESI  119 (207)
Q Consensus        41 ~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~-~~~  119 (207)
                      |++|++++  .|+|+||||++.||++|+||++||+.          ++|+++.|||++|+++||+|++......+. ...
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~----------~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~   68 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTS----------GFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST   68 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHT----------TSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcc----------cccCCceeecccccceeeeeeccCCCCccccccc
Confidence            68888865  99999999999999999999999953          379999999999999999999874433111 122


Q ss_pred             cCCCCCCCCC--CCccCCCcEEEeeecC--CCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCccc
Q 028574          120 YGEKFPDENF--KLKHTGPGLLSMANAG--PDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS  195 (207)
Q Consensus       120 ~~~~~~~e~~--~~~h~~~G~v~~~~~~--~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~  195 (207)
                      .+..+++|..  .+.| ++|+|+|++.+  +++++|||||+|++.++||++|+|||+|++||++|++|++..+++ +|.+
T Consensus        69 ~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~  146 (155)
T PF00160_consen   69 GGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQ  146 (155)
T ss_dssp             TBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSS
T ss_pred             Cccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCC
Confidence            3446888874  3455 89999999975  788999999999999999999999999999999999999887766 9999


Q ss_pred             ceEEeeeee
Q 028574          196 KVVVADSGE  204 (207)
Q Consensus       196 ~i~I~~cg~  204 (207)
                      +|+|.+||+
T Consensus       147 ~v~I~~cgv  155 (155)
T PF00160_consen  147 DVTISSCGV  155 (155)
T ss_dssp             TEEEEEEEE
T ss_pred             CeEEEEeEC
Confidence            999999996

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-40  Score=239.75  Aligned_cols=143  Identities=46%  Similarity=0.709  Sum_probs=131.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |..|+|.||||.+.+|++|+||+.+|..          .||+++.|||-+|+|++|+|++. ..|.|+.++||..+++|.
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~~----------~~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~   75 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCAS----------DYYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY   75 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhhh----------hhccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence            5689999999999999999999999943          38999999999999999999988 778999999999999997


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC--CCCCcccceEEeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR--QNGTPKSKVVVADS  202 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~--~~~~P~~~i~I~~c  202 (207)
                      . .++|+.||+|+||++||++++|||||+.+..|+||-+|+|||+|++|+|+||.|+..+-  +..+|..++.|.+-
T Consensus        76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~i  152 (161)
T KOG0884|consen   76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDI  152 (161)
T ss_pred             HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeee
Confidence            6 58999999999999999999999999999999999999999999999999999997763  33799988887753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-40  Score=284.87  Aligned_cols=143  Identities=50%  Similarity=0.828  Sum_probs=135.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|.+.||+++||++|+||...|          +.+||||..||||+++||||+||+. ++|.||+++||+.++||.
T Consensus       411 tt~gdi~~kl~p~ecpktvenf~th~----------rngyy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedef  479 (558)
T KOG0882|consen  411 TTQGDIHIKLYPEECPKTVENFTTHS----------RNGYYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEF  479 (558)
T ss_pred             ecccceEEEecccccchhhhhhhccc----------cCccccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhc
Confidence            88999999999999999999999999          5569999999999999999999998 899999999999999998


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADS  202 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~c  202 (207)
                      + .+.|+++-+||||+.|+|++|||||||..+.|+||++|+|||||+.||||+++|+++. +++++|.+++.|.+-
T Consensus       480 h~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini  555 (558)
T KOG0882|consen  480 HPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI  555 (558)
T ss_pred             CcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence            7 6999999999999999999999999999999999999999999999999999999665 677999999999874

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=7.9e-38  Score=241.53  Aligned_cols=141  Identities=60%  Similarity=0.940  Sum_probs=123.9

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||.+.||++|+||++||++          .+|+++.|||++|++++|+|++......+  ..++..+++|.
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~----------~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~   71 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARG----------GFYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN   71 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhc----------CCcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence            6689999999999999999999999943          37999999999999999999987443322  34466788887


Q ss_pred             CCCc-cCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCcccceEEee
Q 028574          129 FKLK-HTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKSKVVVAD  201 (207)
Q Consensus       129 ~~~~-h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~~i~I~~  201 (207)
                      .... |+++|+|+|++.+++++++||||++++.++||++|+|||||++|||+|++|+..++ ++++|..+|+|.+
T Consensus        72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            7655 78899999999999999999999999999999999999999999999999996664 5899999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.4e-38  Score=243.91  Aligned_cols=163  Identities=67%  Similarity=1.163  Sum_probs=155.6

Q ss_pred             cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEe---ecCceeEeccCCCCC
Q 028574           36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI---IPSFMLQGGDFTLGD  112 (207)
Q Consensus        36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv---~~~~~iq~G~~~~~~  112 (207)
                      .++++|+|+.++++++|+++++||.|..|++++||..||++++|.+       |.++.|||+   +++|++||||.+..+
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn   74 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN   74 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence            4689999999999999999999999999999999999999988764       999999993   347999999999999


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCC
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT  192 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~  192 (207)
                      ++++.++|++.++||+..++|..+|.|+|++.+|++++|||||++....+||++|+|||+|.+||+++++++....++++
T Consensus        75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk  154 (167)
T KOG0865|consen   75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGK  154 (167)
T ss_pred             CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCc
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cccceEEeeeeee
Q 028574          193 PKSKVVVADSGEL  205 (207)
Q Consensus       193 P~~~i~I~~cg~l  205 (207)
                      +..+|+|.+||+|
T Consensus       155 ~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  155 TSKKITIADCGQL  167 (167)
T ss_pred             ccccEEEecCCcC
Confidence            9999999999986

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=1.2e-36  Score=241.76  Aligned_cols=128  Identities=33%  Similarity=0.510  Sum_probs=106.5

Q ss_pred             CeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC-------------
Q 028574           48 GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR-------------  114 (207)
Q Consensus        48 ~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~-------------  114 (207)
                      .|+.|+|+||||++.||++|+||++||          +.+||+++.||||+++||+|||++...+..             
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~----------~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p   72 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLV----------ERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP   72 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHH----------HhCCcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence            378999999999999999999999999          455899999999999999999998633110             


Q ss_pred             -------CCccccCCCC-----CCCCCCCccCCCcEEEeeecC--CCCCCceEEEecC-------CCCCCCCCccEEEEE
Q 028574          115 -------GGESIYGEKF-----PDENFKLKHTGPGLLSMANAG--PDTNGSQFFITTV-------TTSWLDGRHVVFGKV  173 (207)
Q Consensus       115 -------~~~~~~~~~~-----~~e~~~~~h~~~G~v~~~~~~--~~~~~sqF~I~l~-------~~~~ld~~~~vfG~V  173 (207)
                             .+.++++..+     .++...+.|+.+|+|+|++.+  +++++|||||+++       +.++||++|+|||||
T Consensus        73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V  152 (176)
T cd01924          73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV  152 (176)
T ss_pred             ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence                   1122333332     234455677889999999987  6999999999998       789999999999999


Q ss_pred             EeCHHHHHHHHh
Q 028574          174 LSGMDVVYKVEA  185 (207)
Q Consensus       174 i~G~~vld~I~~  185 (207)
                      ++|||||++|+.
T Consensus       153 veG~dvl~~I~~  164 (176)
T cd01924         153 TDGLDILRELKV  164 (176)
T ss_pred             ecCHHHHHhhcC
Confidence            999999999974

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-35  Score=249.33  Aligned_cols=147  Identities=42%  Similarity=0.643  Sum_probs=136.0

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCC-----
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEK-----  123 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~-----  123 (207)
                      |++|+|+|+||.+++|.+|.|||+||          |..||+.|.||.|..+|.+|+|||+ ++|.||.++|+.-     
T Consensus         7 TtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~   75 (479)
T KOG0415|consen    7 TTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQA   75 (479)
T ss_pred             eecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeecccccc
Confidence            88999999999999999999999999          7779999999999999999999998 7899999998633     


Q ss_pred             --CCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCC-CCCCCCCccEEEEEEeCHHHHHHHH-hCCCCCCCcccceE
Q 028574          124 --FPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVT-TSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVV  198 (207)
Q Consensus       124 --~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~-~~~ld~~~~vfG~Vi~G~~vld~I~-~~~~~~~~P~~~i~  198 (207)
                        ++.|.. .++|.+.|+|+|++.|.+..||||||||++ ...||++|+|||+|+||||+|.+|+ +..+++++|.++|+
T Consensus        76 rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIR  155 (479)
T KOG0415|consen   76 RFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIR  155 (479)
T ss_pred             hhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCccccee
Confidence              455644 789999999999999999999999999977 4689999999999999999999998 88999999999999


Q ss_pred             Eeeeeeec
Q 028574          199 VADSGELP  206 (207)
Q Consensus       199 I~~cg~l~  206 (207)
                      |.+.-+|+
T Consensus       156 I~HTiiLd  163 (479)
T KOG0415|consen  156 IKHTIILD  163 (479)
T ss_pred             eeeeEEec
Confidence            99998885

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-35  Score=250.30  Aligned_cols=158  Identities=39%  Similarity=0.646  Sum_probs=141.7

Q ss_pred             cccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCC
Q 028574           32 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG  111 (207)
Q Consensus        32 ~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~  111 (207)
                      .-|+.+.+|.+.     |+.|+|.||||+++||++|.||++||.          .+||+|+.|||++|+|.+||||++ +
T Consensus         7 ~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOG----------egyy~nt~fhrlvp~f~~Qggdp~-~   70 (439)
T KOG0885|consen    7 LEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCL----------EGYYDNTEFHRLVPGFLVQGGDPT-G   70 (439)
T ss_pred             cCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHH----------hccccCceeeeeccchhcccCCCC-C
Confidence            346777888777     889999999999999999999999994          348999999999999999999998 8


Q ss_pred             CCCCCccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe-CHHHHHHHH-hCCC
Q 028574          112 DGRGGESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS-GMDVVYKVE-AEGR  188 (207)
Q Consensus       112 ~~~~~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~-G~~vld~I~-~~~~  188 (207)
                      +|.||.++||.++.+|.+ ++.++++|+|+||+.+.+.+|||||+||++.|+|++++++||+|+- -+-.+-+|. ...+
T Consensus        71 ~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eid  150 (439)
T KOG0885|consen   71 TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEID  150 (439)
T ss_pred             CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccc
Confidence            899999999999999977 5788899999999999999999999999999999999999999993 455566665 4556


Q ss_pred             CCCCcccceEEeeeeee
Q 028574          189 QNGTPKSKVVVADSGEL  205 (207)
Q Consensus       189 ~~~~P~~~i~I~~cg~l  205 (207)
                      .+.+|..+..|.+|-+|
T Consensus       151 a~~Rp~~p~kI~s~EV~  167 (439)
T KOG0885|consen  151 ADDRPVDPPKIKSVEVL  167 (439)
T ss_pred             cccCCCCccceeeeEee
Confidence            78999999999999987

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00014  Score=64.75  Aligned_cols=139  Identities=22%  Similarity=0.275  Sum_probs=106.8

Q ss_pred             eEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCcc-cc-CC---CCCC-
Q 028574           53 RIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGES-IY-GE---KFPD-  126 (207)
Q Consensus        53 ~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~-~~-~~---~~~~-  126 (207)
                      -|.|+++.+-.|.-++-|...|          ...++++..|.||...+++|.||.......+|.- .| ++   .+|+ 
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~----------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~  182 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFC----------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT  182 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcC----------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence            8999999999999999999999          4458999999999999999999865333222221 11 11   1222 


Q ss_pred             -CCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH-hCCCCCCCcccceEEeee
Q 028574          127 -ENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADS  202 (207)
Q Consensus       127 -e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~-~~~~~~~~P~~~i~I~~c  202 (207)
                       .+..++|. .-++..........+-+|.+.-...+-++.+..|||++..|-++++.|+ ...+.+..|+.++.|.+-
T Consensus       183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V  259 (558)
T KOG0882|consen  183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV  259 (558)
T ss_pred             ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence             23456664 5666666666666678999999999999999999999999999999998 566777889888887653

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.56  E-value=0.017  Score=52.43  Aligned_cols=102  Identities=21%  Similarity=0.344  Sum_probs=63.6

Q ss_pred             eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCCCCC
Q 028574           52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKL  131 (207)
Q Consensus        52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~  131 (207)
                      =.+.+||. ..||.++++|+.+...+.          +   .+.+...-| |.           .....+...+.|+...
T Consensus       201 Ty~evE~~-~~~p~s~EH~la~~~~G~----------~---~Vd~~tsTf-i~-----------d~~L~g~~~p~En~~~  254 (503)
T TIGR03268       201 TYVEVELD-PNAPVSVEHFLALMEDGT----------F---RVDYRTSTF-IS-----------DDSLRGLDKPEENIEK  254 (503)
T ss_pred             EEEEEEEc-CCCChhHHHHHHHHhCCe----------E---EEeeeecce-Ee-----------cccccCccCCccccCc
Confidence            35777876 456999999999994321          1   111111111 11           1112234456666543


Q ss_pred             ccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH
Q 028574          132 KHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       132 ~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~  184 (207)
                        ..+|+|++.+.|.+  ....||--.+.+ -.-.|+|+|+|+.|||++|--+
T Consensus       255 --R~rGtVTVRn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~  302 (503)
T TIGR03268       255 --RRRGAVTVRNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQ  302 (503)
T ss_pred             --ccceeEEEEeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeeccc
Confidence              35899999987744  346888776655 3346999999999999987543

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.55  E-value=0.015  Score=52.90  Aligned_cols=102  Identities=23%  Similarity=0.378  Sum_probs=63.6

Q ss_pred             eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCCCCC
Q 028574           52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKL  131 (207)
Q Consensus        52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~  131 (207)
                      =.+.+||.+ .||.++++|+.+...+.          +   .+.+...-| |.           .....+...+.|+...
T Consensus       204 Ty~eve~~~-~~p~s~EH~la~~~~G~----------f---~Vd~~tstf-I~-----------d~~L~g~~~p~En~~~  257 (508)
T PRK00969        204 TYVEVELDP-GAPKSVEHFLALLEDGT----------F---EVDFETSTF-IA-----------DDRLQGLKIPEENFEP  257 (508)
T ss_pred             EEEEEEEcC-CCCchHHHHHHHHhCCe----------E---EEeeeecce-Ee-----------eccccCccCCccccCc
Confidence            357778775 46999999999994331          1   111111111 11           1112244556666543


Q ss_pred             ccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH
Q 028574          132 KHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       132 ~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~  184 (207)
                        ..+|+|++.+.|.+  ....||--.+.+ -.-.|+|+|+|++|||+++--+
T Consensus       258 --R~~GtVTVRt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~  305 (508)
T PRK00969        258 --RRRGTVTVRTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAK  305 (508)
T ss_pred             --cccceEEEEeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeeccc
Confidence              34899999987754  346888776655 3346999999999999987543

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.21  E-value=0.018  Score=50.80  Aligned_cols=101  Identities=29%  Similarity=0.462  Sum_probs=63.3

Q ss_pred             eeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEee--cCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           51 AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII--PSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        51 ~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~--~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      .=.+.+||.++ +|+++++|+.+.  ++|.              .||.  .+-++.           ..+.....++.|+
T Consensus       202 fTy~eve~s~n-sP~saEH~lalm--edG~--------------lri~~~tntfis-----------~~~lq~~~~~~en  253 (512)
T COG4070         202 FTYFEVELSRN-SPKSAEHFLALM--EDGT--------------LRIDVTTNTFIS-----------DDTLQEEKVPEEN  253 (512)
T ss_pred             EEEEEEEeCCC-CchhHHHHHHHh--hcce--------------EEEEEeccceee-----------ccccccccCChhh
Confidence            34577787754 699999999998  3331              1221  121111           1111234456666


Q ss_pred             CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHH
Q 028574          129 FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~  184 (207)
                      ....  .+|.++..+.|.+  ...-||.--+.++ --.|.|.|||++|||++|--+
T Consensus       254 ~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~  304 (512)
T COG4070         254 FDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAE  304 (512)
T ss_pred             hhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEecc
Confidence            5543  4899999887644  3467887655442 236899999999999987544

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.07  E-value=0.072  Score=48.46  Aligned_cols=114  Identities=18%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCCCCC
Q 028574           52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKL  131 (207)
Q Consensus        52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~~~~  131 (207)
                      --|.||||.+.||+++..|.+.. |-+-. .-|      -..+|=..++-++.-|+...          ...+.+|+..-
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~t-GL~~~-~VG------~L~v~F~~~d~~mFk~~~~~----------~k~LiPEN~P~  436 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFT-GLKTK-PVG------RLPVHFAFKEMIMFKGNKEL----------AKGLIPENTPE  436 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhc-CCccc-ccc------eeEEEEEeCCeeEeccCchh----------ccccCCCCCCC
Confidence            35899999999999999999986 11100 001      12333334443333222221          12233343322


Q ss_pred             ccCCCcEEEeeecCCCCCCceEEEec------CCCC-CCCCCccEEEEEEeCHHHHHHHHh
Q 028574          132 KHTGPGLLSMANAGPDTNGSQFFITT------VTTS-WLDGRHVVFGKVLSGMDVVYKVEA  185 (207)
Q Consensus       132 ~h~~~G~v~~~~~~~~~~~sqF~I~l------~~~~-~ld~~~~vfG~Vi~G~~vld~I~~  185 (207)
                      ....+|.+++-|...... .-.-|-+      +|.. .+++. -++|+|++++|.|.++..
T Consensus       437 ~~V~ag~IgvTN~a~k~~-G~IGVRl~d~defGPTGE~F~gT-NIiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       437 DKVEAGVIGVTNQACKHV-GMIGVRLEDSDEFGPTGEPFSGT-NIIGRVVEGMERLKGLKE  495 (503)
T ss_pred             CccccceEeeechhhhcC-ceEEEEccCCcccCCCCCCccCc-ceEEEecCChhHhccccc
Confidence            233466666655321100 0112222      2222 34443 567999999999988763

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=95.99  E-value=0.039  Score=42.54  Aligned_cols=108  Identities=17%  Similarity=0.120  Sum_probs=57.4

Q ss_pred             eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCc--eeEeccCCCCCCCCCccccCCCCCCCCC
Q 028574           52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSF--MLQGGDFTLGDGRGGESIYGEKFPDENF  129 (207)
Q Consensus        52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~--~iq~G~~~~~~~~~~~~~~~~~~~~e~~  129 (207)
                      -.++.+|..|.||+||+.|.+.-             =|.+..+|-...+.  |+.-++..           ....+.||.
T Consensus         8 ~~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~   63 (147)
T PF12903_consen    8 VSFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENH   63 (147)
T ss_dssp             EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SE
T ss_pred             eEEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcC
Confidence            36889999999999999999988             27777777776553  55555533           012234554


Q ss_pred             CCccCCCcEEEeee---cCC--CCC-CceEEEecCCCCC-CCC-----CccEEEEEEeCHHHHHHHH
Q 028574          130 KLKHTGPGLLSMAN---AGP--DTN-GSQFFITTVTTSW-LDG-----RHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       130 ~~~h~~~G~v~~~~---~~~--~~~-~sqF~I~l~~~~~-ld~-----~~~vfG~Vi~G~~vld~I~  184 (207)
                      ... -.+|-|.+.-   ...  +.. -++.-|.++...- +.+     --.+|++|++|+|-|.++-
T Consensus        64 T~~-P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~  129 (147)
T PF12903_consen   64 TVT-PIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEAC  129 (147)
T ss_dssp             ESS---TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHH
T ss_pred             ccc-CCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHH
Confidence            332 2468777761   111  111 1344444333221 111     1379999999999887775

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=0.067  Score=47.35  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCchhHHHHHHHh
Q 028574           53 RIVMGLFGKAVPKTAENFRALC   74 (207)
Q Consensus        53 ~ivieL~~~~aP~~~~nF~~l~   74 (207)
                      -|.||||.+.||.++..|.+..
T Consensus       377 iieIELyed~APrSv~yFRr~t  398 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRST  398 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhc
Confidence            4899999999999999999886

>PRK00969 hypothetical protein; Provisional

Probab=93.37  E-value=0.56  Score=42.92  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=65.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|.|+|||.  .+..++.-+++...            -|.|...+=--+ .-+..|-+.            ..++.+.
T Consensus        57 TtkG~i~Iel~--~~~~~~~~w~e~yk------------~~e~~~i~W~s~-~~vAfGp~~------------s~l~p~~  109 (508)
T PRK00969         57 TTKGEIVIELT--EENESVDFWLENYK------------EFEGKSLRWTSR-SAVAFGPFE------------SDLEPSR  109 (508)
T ss_pred             ccCceEEEEEc--cCcchhhHHHHhHH------------hhcCCceEeccc-cceeEcccc------------cCccccc
Confidence            78999999999  44556777777662            144544433322 233333221            1121111


Q ss_pred             CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCC--CccEEEEEEeCHHHHHHHHh
Q 028574          129 FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDG--RHVVFGKVLSGMDVVYKVEA  185 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~--~~~vfG~Vi~G~~vld~I~~  185 (207)
                      .. ....++-|.+.-+|-+...+.+.|+..+....-+  .--+||+|+.|..+|+++..
T Consensus       110 ~~-~~y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~gv~grVi~Gk~vl~~L~~  167 (508)
T PRK00969        110 EE-YEYERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPNDGVIGRVVGGKRVLDRLTD  167 (508)
T ss_pred             Cc-ceeecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCceEEEccchhhHhhccC
Confidence            11 1235788888887766666777777655432111  11799999999999999974

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=90.81  E-value=0.19  Score=35.95  Aligned_cols=23  Identities=39%  Similarity=0.434  Sum_probs=13.0

Q ss_pred             CCcCchHHHHHHHHHHHHhhcch
Q 028574            1 MASTNLLPLTMLWAIVLLATFSS   23 (207)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~   23 (207)
                      |.|..+++|.+++|++|+.++..
T Consensus         1 MaSK~~llL~l~LA~lLlisSev   23 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSEV   23 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhh
Confidence            66666666666665555544433

Some of them may be involved in resistance to environmental stress [].

>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function

Probab=83.21  E-value=7.4  Score=28.81  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=29.1

Q ss_pred             CCCcEEEeeecCCCCCCceEEEecCCCC-------CCCCCccEEEEEEeCHHHHHHHH
Q 028574          134 TGPGLLSMANAGPDTNGSQFFITTVTTS-------WLDGRHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       134 ~~~G~v~~~~~~~~~~~sqF~I~l~~~~-------~ld~~~~vfG~Vi~G~~vld~I~  184 (207)
                      ...|.++.-..+.+     |.|-+++.|       .+-....++|||.+|.+.+.++.
T Consensus        60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~  112 (120)
T PF04126_consen   60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK  112 (120)
T ss_dssp             B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred             ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence            35788887654433     778777774       34456899999999999988886

; PDB: 2KA0_A 1ZX8_C 2NNZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
1dyw_A	173	Biochemical And Structural Characterization Of A Di		3e-63
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		1e-56
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-55
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		2e-55
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		3e-55
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		3e-55
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		3e-55
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-53
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-53
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		4e-53
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		4e-53
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		4e-52
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		6e-52
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		7e-52
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		7e-52
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		8e-52
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		8e-52
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		9e-52
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		9e-52
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		1e-51
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-51
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-51
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-51
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-51
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		2e-51
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-51
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-51
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-51
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		3e-51
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		3e-51
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		4e-51
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		5e-51
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		6e-51
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-50
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-50
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		3e-49
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-49
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-49
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		3e-48
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		9e-48
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		1e-47
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		1e-46
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		8e-46
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-45
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		1e-44
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		2e-44
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-43
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		2e-43
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-43
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		2e-42
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-42
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		5e-40
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-39
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-34
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		4e-25
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		4e-25
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		5e-25
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		2e-23
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		2e-21
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		1e-20
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		4e-20
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		6e-20
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		6e-20
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		3e-18
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		9e-16
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-15
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		2e-12
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		8e-08
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		3e-07
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		3e-07
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		4e-07
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		2e-06
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		3e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		2e-05
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		8e-05

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 131/168 (77%)
Query: 38  NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
           +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRI
Sbjct: 4   SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           IP+FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ T
Sbjct: 64  IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           V T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+L
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 124/170 (72%), Gaps = 3/170 (1%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I  K AGRIVM L+   VPKTAENFRALCTGEKG G+SGKPLHYK S FHR+I
Sbjct: 9   KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 99  PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLK---HTGPGLLSMANAGPDTNGSQFFI 155
           P+FM+Q            ESIYG  F DE+F  K   HTG G LSMANAGP+TNGSQFFI
Sbjct: 69  PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T  T WLDG+HVVFG+V+ G+DVV KVE  G  +G  +S++VV+D GE+
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEV 178

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 114/164 (69%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           VYFD+ I   PAGRI M LF   VP TAENFRALCTGEKG+G+SGKPL Y GS FHRIIP
Sbjct: 22  VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM+Q            ESIYG KF DENF   H  P LLSMANAGP+TNGSQFFITTV 
Sbjct: 82  QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
             WLDG+HVVFGKVL GM+VV  +E  G QNG P   V +  SG
Sbjct: 142 CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
           SFM Q            +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ 
Sbjct: 59  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFG V+ GMDVV K+E+ G ++G    K+V+ D G+L
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 164

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
           SFM Q            +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ 
Sbjct: 59  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFG V+ GMDVV K+E+ G ++G    K+V+ D G+L
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 164

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP
Sbjct: 5   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
           SFM Q            +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ 
Sbjct: 58  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFG V+ GMDVV K+E+ G ++G    K+V+ D G+L
Sbjct: 118 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 163

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP
Sbjct: 7   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 59
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
           SFM Q            +SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+ 
Sbjct: 60  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 119
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFG V+ GMDVV K+E+ G ++G    K+V+ D G+L
Sbjct: 120 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 165

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 120/168 (71%), Gaps = 7/168 (4%)
Query: 38  NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
           ++VYFDVE  G+P GR+V  L+   VPKTAENFRALCTGEKG G       Y GS FHR+
Sbjct: 2   SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRV 54
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           IP FMLQ            +SIYG KFPDENFK  H  PGLLSMANAGP+TNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITT 114
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           V   WLDG+HVVFG+V+ G D+V KVE+ G  +G  K+++VVA SGEL
Sbjct: 115 VPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I    AGRI+  LF    P+T ENFRALCTGEK IG  GK LHYK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 99  PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM Q            ESIYG  F DENF +KH  PGLLSMANAGP+TN SQFFIT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              WLDG+HVVFGKV+ GM+VV ++E EG ++G  K  VV+ D GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +VY D++I  KPAGRI M L    VP TAENFR LCT EKG G       +KGS+FHRII
Sbjct: 5   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 57
Query: 99  PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM Q            +SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T  
Sbjct: 58  PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
            T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 118 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 119/166 (71%), Gaps = 7/166 (4%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +VY D++I  KPAGRI M L    VP TAENFR LCT EKG G       +KGS+FHRII
Sbjct: 13  QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 65
Query: 99  PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM Q            +SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T  
Sbjct: 66  PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
            T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 126 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I    AGRI+  LF    P+T ENFRALCTGEK IG  GK LHYK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 99  PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM Q            ESIYG  F DENF +KH  PGLLSMANAGP+TN SQF IT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
              WLDG+HVVFGKV+ GM+VV ++E EG ++G  K  VV+ D GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  199 bits (507), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 25  VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 77
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 78  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 137
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 138 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  199 bits (506), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  199 bits (506), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 5   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 58  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 118 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  199 bits (505), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 14  VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 66
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 67  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 126
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 127 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+L+MANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 115/166 (69%), Gaps = 7/166 (4%)
Query: 38  NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
           + V+FD+   G P G I   LF   VPKTA NFRALCTGEKG G       Y GS FHR+
Sbjct: 2   SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRV 54
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           IP FMLQ            +SIYG KF DENF+LKH  PGLLSMANAGP+TNGSQFFITT
Sbjct: 55  IPDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITT 114
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
           V TSWLDG+HVVFG+V+ GM+VV  +EAEG  +G P+S++ +A  G
Sbjct: 115 VVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 10  VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 62
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 63  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 122
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 123 TKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 122/176 (69%), Gaps = 12/176 (6%)
Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           ++T KVYFD+ I  +  GR+V+GLFGK VPKT +NF AL TGEKG G       YK S F
Sbjct: 10  KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKF 62
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I  FM+Q            +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 63  HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 122
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE---AEGRQNGTPKSKVVVADSGELPL 207
           ITTV T+WLDG+HVVFGKVL GM+VV KVE    +GR    P   V +AD G++ +
Sbjct: 123 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDK--PLKDVTIADCGKIEV 176

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FH+IIP
Sbjct: 6   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHKIIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 59  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 122/176 (69%), Gaps = 12/176 (6%)
Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           ++T KVYFD+ I  +  GR+V+GLFGK VPKT +NF AL TGEKG G       YK S F
Sbjct: 10  KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKF 62
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I  FM+Q            +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 63  HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 122
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE---AEGRQNGTPKSKVVVADSGELPL 207
           ITTV T+WLDG+HVVFGKVL GM+VV KVE    +GR    P   V +AD G++ +
Sbjct: 123 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDK--PLKDVTIADCGKIEV 176

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 5   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 58  GFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  GM++V  ++  G +NG    K+ +AD G+L
Sbjct: 118 TEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 125/182 (68%), Gaps = 10/182 (5%)
Query: 29  SDQNLK--EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKP 86
           SD+  K  ++T KVYFD+ I  +  GR++ GLFGK VPKT +NF AL TGEKG G     
Sbjct: 5   SDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG----- 59
Query: 87  LHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGP 146
             YK S FHR+I  FM+Q            +SIYGE+FPDENFKLKH GPG +SMANAG 
Sbjct: 60  --YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGK 117
Query: 147 DTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGEL 205
           DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VV KVE+ +      P   V++AD G++
Sbjct: 118 DTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
Query: 206 PL 207
            +
Sbjct: 178 EV 179

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 113/166 (68%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 5   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM Q            +SIYGEKF DENF LKHTGPG+LSMANAGP+TNGSQFFI T  
Sbjct: 58  GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFG V  GM++V  +E  G +NG    K+ +AD G+L
Sbjct: 118 TKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/174 (56%), Positives = 121/174 (69%), Gaps = 8/174 (4%)
Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           ++T KVYFD+ I  +  GR++ GLFGK VPKT +NF AL TGEKG G       YK S F
Sbjct: 3   KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKF 55
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I  FM+Q            +SIYGE+FPDENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 56  HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 115
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGELPL 207
           ITTV T+WLDG+HVVFGKVL GM+VV KVE+ +      P   V++AD G++ +
Sbjct: 116 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEV 169

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  196 bits (499), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 118/174 (67%), Gaps = 8/174 (4%)
Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           ++T++VYFD+EI GKP GRIV+GLFGK VPKTA NF  L    KG G       Y GS F
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF 56
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I  FM+Q             SIYGEKF DENFKLKH G G LSMANAG DTNGSQFF
Sbjct: 57  HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGELPL 207
           ITTV T WLDGRHVVFGK+L GMDVV K+E   +  G  PK  V++A SG + +
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 95/166 (57%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +VY D++I  KPAGRI   L    VP TAENFR LCT EKG G       +KGS+FHRII
Sbjct: 14  QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHRII 66
Query: 99  PSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P F  Q            +SIYG+KF DENF LKHTGPGLLS AN+GP+TNGSQFF+T  
Sbjct: 67  PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
            T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 127 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  194 bits (494), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRI 97
           +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG  +GKPLH+KG  FHRI
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           I  FM+Q            ESIYGEKF DENF  KH   GLLSMANAG +TNGSQFFITT
Sbjct: 77  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           V T  LDG+HVVFG+V+ GM V   +E    +   P    V+A+ GEL
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/166 (57%), Positives = 110/166 (66%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G       YKGS FHRIIP
Sbjct: 5   VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            F  Q            +SIYGEKF DENF LKHTGPG+LS ANAGP+TNGSQFFI T  
Sbjct: 58  GFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAK 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T WLDG+HVVFGKV  G ++V   E  G +NG    K+ +AD G+L
Sbjct: 118 TEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+F++ I  KP GRIV  L+ +AVPKTA+NFR L TG+ G G       YK S FHR+IP
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FMLQ            +SIYGEKF DENF++KHT PGLLSMANAG +TNGSQFFITTV 
Sbjct: 59  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 118
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           TSWLDG+HVVFG+V+ G+D+V KVE +G  +G   + + + D G +
Sbjct: 119 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 164

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 116/166 (69%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+F++ I  KP GRIV  L+ +AVPKTA+NFR L TG+ G G       YK S FHR+IP
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FMLQ            +SIYGEKF DENF++KHT PGLLSMANAG +TNGSQFFITTV 
Sbjct: 58  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 117
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           TSWLDG+HVVFG+V+ G+D+V KVE +G  +G   + + + D G +
Sbjct: 118 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 163

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 115/173 (66%), Gaps = 8/173 (4%)
Query: 36  ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
           +T+KV+FDV I  K  GRIV+GLFG  VPKT ENF AL TGEKG G       YKGS FH
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFH 58
Query: 96  RIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
           R+I  FM+Q             SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFI
Sbjct: 59  RVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 118
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGELPL 207
           T    +WLDG+HVVFGKVL GM VV+ +E +    +  P +   + +SG++ +
Sbjct: 119 TLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  186 bits (471), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 115/173 (66%), Gaps = 8/173 (4%)
Query: 36  ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
           +T KV+FDV I  K  GRIV+GLFGK VPKT ENF AL TGEKG G       YKGS FH
Sbjct: 14  VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFH 66
Query: 96  RIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
           R+I  FM+Q             SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFI
Sbjct: 67  RVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 126
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGELPL 207
           T    +WLDG+HVVFGKV+ GM VV+ +E +    +  P +   + +SG++ +
Sbjct: 127 TLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  185 bits (470), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 118/182 (64%), Gaps = 11/182 (6%)
Query: 24  IQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS 83
           ++ KK  +NL     +V+FD+ I    AGRIVM L    VP+TAENFRALCTGE+G G  
Sbjct: 1   MRTKKQKRNLP----RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-- 54
Query: 84  GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMAN 143
                Y    FHR+IP FM Q            +SIYG KF DENF+L+H G G+LSMAN
Sbjct: 55  -----YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMAN 109
Query: 144 AGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
           +GP+TNGSQFFI T    WLDG+HVVFG+V+ G +VV K+E+ G ++G  K  V+++  G
Sbjct: 110 SGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCG 169
Query: 204 EL 205
           EL
Sbjct: 170 EL 171

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/172 (56%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           E+T KVYFDV I  +P GRI +GLFGK  P T ENFR LCTGE G G       YK S F
Sbjct: 9   EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I +FM+Q            +SIYGEKF DEN  +KH   G LSMANAGP+TNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
           ITT  T WLDGRHVVFGKVL GMDVV ++E  +   +  P   V +  SGEL
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  179 bits (455), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 111/172 (64%), Gaps = 9/172 (5%)
Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           E+T KVYFDV I  +P GRI +GLFGK  P T ENFR LCTGE G G       YK S F
Sbjct: 9   EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I +FM+Q            +SIYGEKF DEN  +KH   G LSMANAGP+TNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
           ITT  T WLDG HVVFGKVL GMDVV ++E  +   +  P   V +  SGEL
Sbjct: 121 ITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 114/171 (66%), Gaps = 9/171 (5%)
Query: 36  ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
           +T+KVYFD+ I  +P GR+V+GLFG  VPKT ENF+ L +GE G G       YKGS FH
Sbjct: 4   VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFH 56
Query: 96  RIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
           R+I +FM+Q            +SIYG +F DEN K+KH   G +SMANAGP++NGSQFF+
Sbjct: 57  RVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFV 115
Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
           TT  T WLDGRHVVFGKV+ GMDVV KVE  +   N  PK  V + D G L
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  175 bits (444), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/174 (54%), Positives = 110/174 (63%), Gaps = 9/174 (5%)
Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
           KE +  VYFDV    +  GRIVM L    VPKTA+NFR LC   KG G       YKGST
Sbjct: 24  KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGST 76
Query: 94  FHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQF 153
           FHRIIP FM+Q             SIYGEKFPDENF+LKHT  G+LSMAN G  TNGSQF
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQF 136
Query: 154 FITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS--KVVVADSGEL 205
           FIT   T WLD +HVVFG+V+ GMDVV+K+   G ++G  K   ++ + D G L
Sbjct: 137 FITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVL 190

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 109/175 (62%), Gaps = 3/175 (1%)
Query: 32  NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKG 91
           N   +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKG
Sbjct: 5   NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKG 62
Query: 92  STFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGS 151
           STFHR+I  FM+Q             SIY   F DENFKL+H+ PGLLSMAN+GP TNG 
Sbjct: 63  STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 152 QFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
           QFFIT     WLDG+HVVFGK++ G+ V+ K+E      N  PK  VV++  GE+
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
           + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR+
Sbjct: 28  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           +  FM+Q            ESIYG  F DE+F +KH    LLSMAN G DTNGSQFFITT
Sbjct: 88  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
             T  LDG HVVFG+V+SG +VV ++E +     + P ++V +   GEL
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
           + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           +  FM+Q            ESIYG  F DE+F +KH    LLSMAN G DTNGSQFFITT
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
             T  LDG HVVFG+V+SG +VV ++E +     + P ++V +   GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  171 bits (433), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
           + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           +  FM+Q            ESIYG  F DE+F +KH    LLSMAN G DTNGSQFFITT
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
             T  LDG HVVFG+V+SG +VV ++E +     + P ++V +   GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 105/166 (63%), Gaps = 7/166 (4%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+FDV   G+P GRI M LF   VP+TAENFRALCTGEKG G       +K S FHR+IP
Sbjct: 9   VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIP 61
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            F+ Q            +SIYG+KF DENF +KHTGPGLLSMAN G +TN SQF IT   
Sbjct: 62  DFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKK 121
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              LD +HVVFG V  GMD V K+E+ G   G+   ++ + + G++
Sbjct: 122 AEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 110/174 (63%), Gaps = 2/174 (1%)
Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGS 92
           K+   +V+ DV I G  AGRIVM L+    P+T  NF  LCTG  G GK SGKPLHYKGS
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 93  TFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
           TFHR+I +FM+Q            ESIYG  F DE F +KH  P ++SMAN GP+TNGSQ
Sbjct: 63  TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 122
Query: 153 FFITTVTTSWLDGRHVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVADSGEL 205
           FFITT     L+  HVVFGKV+SG +VV K+E  +      P + VV+ + GEL
Sbjct: 123 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  160 bits (405), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/177 (50%), Positives = 109/177 (61%), Gaps = 16/177 (9%)
Query: 38  NKVYFDVE-----IAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGS 92
           ++V+FDVE      A    GRIV  LF K VPKTA+NFR LC    G G       Y+ S
Sbjct: 3   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRES 55
Query: 93  TFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
           TFHRIIP+FM+Q             SIYG+KF DENF  KH   G+LSMANAGP+TNGSQ
Sbjct: 56  TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 115
Query: 153 FFITTVTTSWLDGRHVVFGKVLS--GMDVVYKVEAEGRQNGTPKSKVV--VADSGEL 205
           FFITT  TSWLDG+HVVFG+V       VV ++EA G  +G+ +S     + + GEL
Sbjct: 116 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
           + +FD+EI  +P GRI+  LF    PKT +NF  LC+GEKG+GK+ GK L YKGSTFHR+
Sbjct: 21  QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 98  IPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           + +FM+Q            ESIYG  F DENF LKH    LLSMAN G  TNGSQFFITT
Sbjct: 81  VKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT-PKSKVVVADSGEL 205
                LDG HVVFG V+SG +V+ ++E       + P + V V D G L
Sbjct: 141 KPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  141 bits (355), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 40  VYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIP 99
           V+ D+ +     G+    LF   VPKT+ENFR  CTGE  +  +  P+ YK + FHR+I 
Sbjct: 62  VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIK 119
Query: 100 SFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
            FM+Q             SIYGEKF DENF +KH   GLLSMAN+GP+TNG QFFITT  
Sbjct: 120 EFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKK 179
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG----TPKSKVVVADSGEL 205
             WLDG++VVFG+++    ++   + E          PK  + V + GEL
Sbjct: 180 CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G IV+ L+ K  PKT +NF  L    +G        +Y G+ FHRII  FM+Q       
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
                 SIYG++F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +F
Sbjct: 71  GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 171 GKVLSGMDVVYKV 183
           G+V  G+ +V +V
Sbjct: 130 GRVCQGIGMVNRV 142

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  110 bits (276), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G IV+ L+ K  PKT +NF  L    +G        +Y G+ FHRII  FM+Q       
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
                 SIYG++F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +F
Sbjct: 71  GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 171 GKVLSGMDVVYKV 183
           G+V  G+ +V +V
Sbjct: 130 GRVCQGIGMVNRV 142

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G IV+ L+ K  PKT +NF  L    +G        +Y G+ FHRII  FM+Q       
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
                 SIYG++F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +F
Sbjct: 71  GRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129
Query: 171 GKVLSGMDVVYKV 183
           G+V  G+ +V +V
Sbjct: 130 GRVCQGIGMVNRV 142

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 77/142 (54%), Gaps = 12/142 (8%)
Query: 43  DVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM 102
           D  I     G I   LF    PKT ENF   C   +         +Y G TFHRII  FM
Sbjct: 22  DSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRN-------GYYNGHTFHRIIKGFM 71
Query: 103 LQXXXXXXXXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTS 161
           +Q            ESI+G +F DE +  L+H  P  LSMANAG +TNGSQFFIT V T 
Sbjct: 72  IQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 130
Query: 162 WLDGRHVVFGKVLSGMDVVYKV 183
           WLD +H VFG+V  GM+VV ++
Sbjct: 131 WLDNKHTVFGRVTKGMEVVQRI 152

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 71/134 (52%), Gaps = 12/134 (8%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G I + LF K   KT +NF                 +Y    FHR+I  FM+Q       
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSGD 64
Query: 112 XXXXXESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
                ESI+G +F DE F  L H+ P ++SMAN GP+TNGSQFFITTV   WLD +H VF
Sbjct: 65  GTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123
Query: 171 GKVLSGMDVVYKVE 184
           GKV  G  +V  +E
Sbjct: 124 GKVTQGSKIVLDIE 137

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 14/135 (10%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G + + L     PKT ENF  LC          K  +Y G+ FHR I +F++Q       
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 112 XXXXXESIYGEKFPDENFK--LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
                ES +G+ F DE F+  L HTG G+LSMAN+GP++N SQFFIT  + ++LD +H +
Sbjct: 79  GTGG-ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 170 FGKVLSGMDVVYKVE 184
           FG+V+ G DV+  +E
Sbjct: 137 FGRVVGGFDVLTAME 151

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 72/133 (54%), Gaps = 12/133 (9%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G   + L+    PKT  NF  LC  E G         Y  + FHR+IP+F++Q       
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMGF--------YDNTIFHRVIPNFVIQGGDPTGT 97
Query: 112 XXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
                +SIYGE F DE N +LKHTG G+LSM+N GP+TN SQFFIT      LDG+H +F
Sbjct: 98  GKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156
Query: 171 GKVLSGMDVVYKV 183
            +V   M  +  +
Sbjct: 157 ARVSKNMTCIENI 169

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
            G I + +F +  PKT ENF ALC             +Y G  FHR I  FM+Q      
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 111 XXXXXXESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
                  SI+G+KF DE  + LKH   G++SMAN GP+TNGSQFFIT      LD ++ V
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 170 FGKVLSGMDVVYKVE 184
           FGKV+ G++ + ++E
Sbjct: 118 FGKVIDGLETLDELE 132

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
            G I + +F +  PKT ENF ALC             +Y G  FHR I  FM+Q      
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 111 XXXXXXESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
                  SI+G+KF DE  + LKH   G++SMAN GP+TNGSQFFIT      LD ++ V
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 170 FGKVLSGMDVVYKVE 184
           FGKV+ G++ + ++E
Sbjct: 124 FGKVIDGLETLDELE 138

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGI---GKSGKPL--HYKGSTFHRIIPSFMLQXX 106
           G I + LFG   PKT  NF  L  G K       SG P    Y G+ FHR+I  FM+Q  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 107 XXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGR 166
                        + ++F  E   L+   P LL+MANAGP TNGSQFFIT   T  L+ R
Sbjct: 93  DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 167 HVVFGKVLSG-----MDVVYKVEAEGRQNGTPKSKVVV 199
           H +FG+V+       ++ + K   +G  N  P   VV+
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDG--NDRPTDPVVI 185

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 14/134 (10%)
Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
           AG I + L+ K  PK   NF  LC             +Y  + FHR++P F++Q      
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTG 82
Query: 111 XXXXXXESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVV 169
                 ESIYG  F DE + +L+    GL++MANAG   NGSQFF T      L+ +H +
Sbjct: 83  TGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTI 141
Query: 170 FGKVLSGMDVVYKV 183
           FGKV    D VY +
Sbjct: 142 FGKVTG--DTVYNM 153

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G +   LF    PK  +NF AL         SG   +YK + FH+ I  F++Q       
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 112 XXXXXESIYGEKFPDENF-KLKHTGPGLLSMANAG----PDTNGSQFFITTVTTSWLDGR 166
                ESIYG  F DE + +LK+   G+LSMA+ G    P+TNGSQFFIT  +   L+G 
Sbjct: 76  GKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 167 HVVFGKVLSGMDVVYKVE-AEGRQNGTPKSKVVVAD 201
           +V+FGK++ G + +  +E     ++  P  ++++ D
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G + + L     P+  ++F  LC  +          ++  + FHR I +FM+Q       
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 112 XXXXXESIY-----------GEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
                + +            G  F DE + +L H G G+LSMAN G  +N S+FFIT  +
Sbjct: 66  QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125
Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVE 184
              L+ +H +FG+V+ G+DV+ + E
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWE 150

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 70/164 (42%), Gaps = 31/164 (18%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXX-- 109
           G IV+  F    P+T +NF   C          +   Y  + FHR+I  FM+Q       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 110 XXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANA-GPDTNGSQFFITTVTTSWLDGR-- 166
                  E I  E     N  LK+T  G L+MA    P +  +QFFI  V   +L+    
Sbjct: 59  MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 167 ------HVVFGKVLSGMDVVYKVE--AEGR---QNGTPKSKVVV 199
                 + VF +V+ GMDVV K++  A GR       PK  V++
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
           AG I + L  +  P + +NF            SG    Y  +TFHR+IP FM+Q      
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 111 XXXXXXESIYGEKFPDENFK------LKHTGPGLLSMAN-AGPDTNGSQFFITTVTTSWL 163
                      +K P+   K      L++T  G ++MA  A  D+  SQFFI     ++L
Sbjct: 63  QMQ--------QKKPNPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFL 113
Query: 164 D-GR----HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVVADSGELP 206
           D G+    + VFGKV+ GMDV  K+        G     P   VV+  +  LP
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 75/173 (43%), Gaps = 36/173 (20%)
Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXX 110
           AG I + L  +  P + +NF            SG    Y  +TFHR+IP FM+Q      
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTE 62
Query: 111 XXXXXXESIYGEKFPDENFK------LKHTGPGLLSMAN-AGPDTNGSQFFITTVTTSWL 163
                      +K P+   K      L++T  G ++MA  A  D+  SQFFI     ++L
Sbjct: 63  QMQ--------QKKPNPPIKNEADNGLRNTR-GTIAMARTADKDSATSQFFINVADNAFL 113
Query: 164 D-GR----HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVVADSGELP 206
           D G+    + VFGKV+ GMDV  K+        G     P   VV+  +  LP
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 69/164 (42%), Gaps = 31/164 (18%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXX-- 109
           G IV+  F    P+T +NF   C          +   Y  + FHR+I  FM+Q       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 110 XXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANA-GPDTNGSQFFITTVTTSWLDGR-- 166
                  E I  E     N  LK+T  G L+MA    P +  +QFFI  V   +L+    
Sbjct: 59  MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 167 ------HVVFGKVLSGMDVVYKVE--AEGR---QNGTPKSKVVV 199
                 + VF +V+ GMD V K++  A GR       PK  V++
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 50/157 (31%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G I + LF    P+TA NF              K  HY G+ FHR+I  FM+Q       
Sbjct: 9   GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQ------- 51
Query: 112 XXXXXESIYGEKFPDENFKLKHTGPGLLSMANAG---------------PDTNGSQFFIT 156
                    G  F +   K K T   + + AN G               P +  +QFFI 
Sbjct: 52  ---------GGGF-EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFIN 101
Query: 157 TVTTSWLDGR--------HVVFGKVLSGMDVVYKVEA 185
               ++LD          + VFG+V+ G DVV ++++
Sbjct: 102 VKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKS 138

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGE------KGIGKSGKPLH---- 88
           +VY D+ +  +  GR+ + LF  A P   ENF  L  G+       G GK     H    
Sbjct: 16  RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 89  YKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEK-----FPDENFKLKHTGPGLLSMAN 143
           Y+G  FH ++ +  +              ++Y ++     F D  +   H   GLLS+  
Sbjct: 76  YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 144 AGPDTNGSQFFITTVTTSW-----------LDGRHVVFGKVLSGMDVVYKVEA 185
              D +G++++ +T   +            LD   VV G+V  G+DV+ K+ +
Sbjct: 133 PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINS 185

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 69/176 (39%), Gaps = 55/176 (31%)
Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXX 111
           G I + L     PKT ENF  L   +KG        HY G+ FHR+I  FM+Q       
Sbjct: 13  GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQ------- 55
Query: 112 XXXXXESIYGEKFPDENFKLKHTGPGLLSMANAG---------------PDTNGSQFFIT 156
                    G  F +   K K T   + + AN G               P +  +QFFI 
Sbjct: 56  ---------GGGF-EPGLKQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFIN 105
Query: 157 TVTTSWLDGR--------HVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVV 199
                +L+          + VFGKV+ G D+V K++A     +G     P   VV+
Sbjct: 106 VNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 31/155 (20%)
Query: 40  VYFDVEIAGK-----PAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           +YF     GK       G + + L+ +  P    NF  LC   +G        +Y  + F
Sbjct: 14  LYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCL--EG--------YYVNTIF 63
Query: 95  HRIIPSFMLQXXXXXXXXXXXXESIY-GEKFPDENF-KLKHTGPGLLSMANAGPD----- 147
           HR++  F++Q            ++ + G+ F  E   +LK    GL+ +AN G       
Sbjct: 64  HRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAE 123
Query: 148 ---------TNGSQFFITTVTTSWLDGRHVVFGKV 173
                    TNG+QFFIT      L+  + +FGKV
Sbjct: 124 NDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-129
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-128
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-127
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-127
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-126
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-125
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-125
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-121
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-121
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-120
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-119
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-119
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-119
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-119
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-118
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-118
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-118
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-113
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-112
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	2e-74
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-74
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	1e-73
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	7e-73
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-70
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	1e-65
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-65
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	3e-65
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	4e-63
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-61
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	6e-58
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	9e-54
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	1e-40
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	5e-40
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	7e-39
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-32

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  359 bits (925), Expect = e-129
 Identities = 120/168 (71%), Positives = 140/168 (83%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRII
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P+FM+QGGDFT G+G GGESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELP 206
            T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+L 
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLK 172

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  359 bits (923), Expect = e-128
 Identities = 96/189 (50%), Positives = 120/189 (63%), Gaps = 2/189 (1%)

Query: 21  FSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGI 80
            S      S   +   + + +FD+EI  +P GRI+  LF    PKT +NF  LC+GEKG+
Sbjct: 3   SSHHHHHHSSGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGL 62

Query: 81  GKS-GKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLL 139
           GK+ GK L YKGSTFHR++ +FM+QGGDF+ G+G+GGESIYG  F DENF LKH    LL
Sbjct: 63  GKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLL 122

Query: 140 SMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVV 198
           SMAN G  TNGSQFFITT     LDG HVVFG V+SG +V+ ++E         P + V 
Sbjct: 123 SMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVR 182

Query: 199 VADSGELPL 207
           V D G L  
Sbjct: 183 VIDCGVLAT 191

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  355 bits (913), Expect = e-127
 Identities = 118/174 (67%), Positives = 128/174 (73%), Gaps = 1/174 (0%)

Query: 31  QNLKEITN-KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHY 89
           +NL    N  VYFD+ I   PAGRI M LF   VP TAENFRALCTGEKG+G+SGKPL Y
Sbjct: 12  ENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCY 71

Query: 90  KGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTN 149
            GS FHRIIP FM+QGGDFT GDG GGESIYG KF DENF   H  P LLSMANAGP+TN
Sbjct: 72  TGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTN 131

Query: 150 GSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
           GSQFFITTV   WLDG+HVVFGKVL GM+VV  +E  G QNG P   V +  SG
Sbjct: 132 GSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  354 bits (911), Expect = e-127
 Identities = 100/174 (57%), Positives = 119/174 (68%), Gaps = 2/174 (1%)

Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGS 92
           K+   +V+ DV I G  AGRIVM L+    P+T  NF  LCTG  G GK SGKPLHYKGS
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62

Query: 93  TFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
           TFHR+I +FM+QGGDFT GDG GGESIYG  F DE F +KH  P ++SMAN GP+TNGSQ
Sbjct: 63  TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 122

Query: 153 FFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGEL 205
           FFITT     L+  HVVFGKV+SG +VV K+E         P + VV+ + GEL
Sbjct: 123 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  351 bits (902), Expect = e-126
 Identities = 107/167 (64%), Positives = 122/167 (73%), Gaps = 1/167 (0%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I    AGRI+  LF    P+T ENFRALCTGEK  G  GK LHYK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHRII 63

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGD T G+G GGESIYG  F DENF +KH  PGLLSMANAGP+TN SQFFIT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              WLDG+HVVFGKV+ GM+VV ++E EG ++G  K  VV+ D GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  349 bits (899), Expect = e-125
 Identities = 97/169 (57%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRI 97
           + +FD+ I  +PAGR+V  LF    PKT ENFR LCTGEKG GKS  KPLHYK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70

Query: 98  IPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           +  FM+QGGDF+ G+GRGGESIYG  F DE+F +KH    LLSMAN G DTNGSQFFITT
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGEL 205
             T  LDG HVVFG+V+SG +VV ++E +       P ++V +   GEL
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  349 bits (897), Expect = e-125
 Identities = 96/173 (55%), Positives = 116/173 (67%), Gaps = 3/173 (1%)

Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
             +   V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGST
Sbjct: 7   SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGST 64

Query: 94  FHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQF 153
           FHR+I  FM+QGGDF  GDG G  SIY   F DENFKL+H+ PGLLSMAN+GP TNG QF
Sbjct: 65  FHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQF 124

Query: 154 FITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGEL 205
           FIT     WLDG+HVVFGK++ G+ V+ K+E      N  PK  VV++  GE+
Sbjct: 125 FITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  340 bits (875), Expect = e-121
 Identities = 109/183 (59%), Positives = 131/183 (71%), Gaps = 8/183 (4%)

Query: 26  AKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGK 85
                +   ++T KVYFD+ I  +  GR++ GLFGK VPKT +NF AL TGEKG G    
Sbjct: 4   GSDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG---- 59

Query: 86  PLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAG 145
              YK S FHR+I  FM+QGGDFT GDG GG+SIYGE+FPDENFKLKH GPG +SMANAG
Sbjct: 60  ---YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAG 116

Query: 146 PDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGE 204
            DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VV KVE+        P   V++AD G+
Sbjct: 117 KDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGK 176

Query: 205 LPL 207
           + +
Sbjct: 177 IEV 179

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  347 bits (891), Expect = e-121
 Identities = 107/169 (63%), Positives = 125/169 (73%), Gaps = 1/169 (0%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRI 97
           +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG  +GKPLH+KG  FHRI
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76

Query: 98  IPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           I  FM+QGGDF+  +G GGESIYGEKF DENF  KH   GLLSMANAG +TNGSQFFITT
Sbjct: 77  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELP 206
           V T  LDG+HVVFG+V+ GM V   +E    +   P    V+A+ GEL 
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELK 185

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  336 bits (864), Expect = e-120
 Identities = 98/172 (56%), Positives = 121/172 (70%), Gaps = 7/172 (4%)

Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
           K    +V+FD+ I    AGRIVM L    VP+TAENFRALCTGE+G G       Y    
Sbjct: 7   KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCC 59

Query: 94  FHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQF 153
           FHR+IP FM QGGDF  GDG GG+SIYG KF DENF+L+H G G+LSMAN+GP+TNGSQF
Sbjct: 60  FHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQF 119

Query: 154 FITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           FI T    WLDG+HVVFG+V+ G +VV K+E+ G ++G  K  V+++  GEL
Sbjct: 120 FICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  335 bits (862), Expect = e-119
 Identities = 102/184 (55%), Positives = 121/184 (65%), Gaps = 9/184 (4%)

Query: 25  QAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSG 84
           Q +      KE +  VYFDV    +  GRIVM L    VPKTA+NFR LC   KG G   
Sbjct: 15  QTQGPGSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG--- 71

Query: 85  KPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANA 144
               YKGSTFHRIIP FM+QGGD+T  +G GG SIYGEKFPDENF+LKHT  G+LSMAN 
Sbjct: 72  ----YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANC 127

Query: 145 GPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPK--SKVVVADS 202
           G  TNGSQFFIT   T WLD +HVVFG+V+ GMDVV+K+   G ++G  K   ++ + D 
Sbjct: 128 GAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDC 187

Query: 203 GELP 206
           G L 
Sbjct: 188 GVLG 191

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  334 bits (860), Expect = e-119
 Identities = 106/170 (62%), Positives = 128/170 (75%), Gaps = 7/170 (4%)

Query: 36  ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFH 95
              +VY D++I  KPAGRI M L    VP TAENFR LCT EKG G       +KGS+FH
Sbjct: 10  SNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFH 62

Query: 96  RIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFI 155
           RIIP FM QGGDFT  +G GG+SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+
Sbjct: 63  RIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFL 122

Query: 156 TTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           T   T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV++AD GE 
Sbjct: 123 TCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  334 bits (858), Expect = e-119
 Identities = 101/167 (60%), Positives = 125/167 (74%), Gaps = 7/167 (4%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            V+F++ I  KP GRIV  L+ +AVPKTA+NFR L TG+ G G       YK S FHR+I
Sbjct: 4   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVI 56

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FMLQGGDFT  +G GG+SIYGEKF DENF++KHT PGLLSMANAG +TNGSQFFITTV
Sbjct: 57  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            TSWLDG+HVVFG+V+ G+D+V KVE +G  +G   + + + D G +
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV 163

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  333 bits (856), Expect = e-119
 Identities = 108/167 (64%), Positives = 127/167 (76%), Gaps = 7/167 (4%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG G       YKGSTFHR+I
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVI 57

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           PSFM Q GDFT  +G GG+SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+
Sbjct: 58  PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 117

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WLDG+HVVFG V+ GMDVV K+E+ G ++G    K+V+ D G+L
Sbjct: 118 KTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 164

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  333 bits (857), Expect = e-118
 Identities = 106/181 (58%), Positives = 127/181 (70%), Gaps = 7/181 (3%)

Query: 25  QAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSG 84
             +++      +   V+FD+ + G+P GR+   LF   VPKTAENFRAL TGEKG G   
Sbjct: 10  SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG--- 66

Query: 85  KPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANA 144
               YKGS FHRIIP FM QGGDFT  +G GG+SIYGEKF DENF LKHTGPG+LSMANA
Sbjct: 67  ----YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANA 122

Query: 145 GPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
           GP+TNGSQFFI T  T WLDG+HVVFGKV  GM++V  +E  G +NG    K+ +AD G+
Sbjct: 123 GPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQ 182

Query: 205 L 205
           L
Sbjct: 183 L 183

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  335 bits (860), Expect = e-118
 Identities = 80/171 (46%), Positives = 106/171 (61%), Gaps = 6/171 (3%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            V+ D+ +     G+    LF   VPKT+ENFR  CTGE  +  +  P+ YK + FHR+I
Sbjct: 61  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVI 118

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             FM+QGGDF   +G G  SIYGEKF DENF +KH   GLLSMAN+GP+TNG QFFITT 
Sbjct: 119 KEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 178

Query: 159 TTSWLDGRHVVFGKVLS--GMDVVYKVEAEG--RQNGTPKSKVVVADSGEL 205
              WLDG++VVFG+++    + ++ K+E          PK  + V + GEL
Sbjct: 179 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  331 bits (852), Expect = e-118
 Identities = 107/173 (61%), Positives = 120/173 (69%), Gaps = 9/173 (5%)

Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
            E+T KVYFDV I  +P GRI +GLFGK  P T ENFR LCTGE G G       YK S 
Sbjct: 8   PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSI 60

Query: 94  FHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQF 153
           FHR+I +FM+QGGDFT  DG GG+SIYGEKF DEN  +KH   G LSMANAGP+TNGSQF
Sbjct: 61  FHRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQF 119

Query: 154 FITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSGEL 205
           FITT  T WLDGRHVVFGKVL GMDVV ++E      +  P   V +  SGEL
Sbjct: 120 FITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  319 bits (820), Expect = e-113
 Identities = 99/176 (56%), Positives = 119/176 (67%), Gaps = 16/176 (9%)

Query: 39  KVYFDVE-----IAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
           +V+FDVE      A    GRIV  LF K VPKTA+NFR LC    G G       Y+ ST
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56

Query: 94  FHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQF 153
           FHRIIP+FM+QGGDFT G+G GG SIYG+KF DENF  KH   G+LSMANAGP+TNGSQF
Sbjct: 57  FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116

Query: 154 FITTVTTSWLDGRHVVFGKVL--SGMDVVYKVEAEGRQNGTPKS--KVVVADSGEL 205
           FITT  TSWLDG+HVVFG+V       VV ++EA G  +G+ +S  +  + + GEL
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  319 bits (818), Expect = e-112
 Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 24/193 (12%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGE------KGIGKSGK----PLH 88
           +VY D+ +  +  GR+ + LF  A P   ENF  L  G+       G GK          
Sbjct: 16  RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75

Query: 89  YKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPD---ENFKLKHTGPGLLSMA--- 142
           Y+G  FH ++ +  +  GD    +G    ++Y ++       ++   H   GLLS+    
Sbjct: 76  YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYT 135

Query: 143 -NAGPDTNGSQFFIT------TVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPK 194
             +G     S F IT      +     LD   VV G+V  G+DV+ K+ +      G   
Sbjct: 136 DESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKY 195

Query: 195 SKVVVADSGELPL 207
               +   G    
Sbjct: 196 PTFSIGKCGAYLD 208

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  220 bits (564), Expect = 2e-74
 Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 12/135 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + LF K   KT +NF                 +Y    FHR+I  FM+Q GD + G
Sbjct: 15  GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-G 63

Query: 112 DGRGGESIYGEKFPDENFK-LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
           DG GGESI+G +F DE F  L H+ P ++SMAN GP+TNGSQFFITTV   WLD +H VF
Sbjct: 64  DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 123

Query: 171 GKVLSGMDVVYKVEA 185
           GKV  G  +V  +E 
Sbjct: 124 GKVTQGSKIVLDIEK 138

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  220 bits (563), Expect = 3e-74
 Identities = 74/166 (44%), Positives = 91/166 (54%), Gaps = 14/166 (8%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           K   D  I     G I   LF    PKT ENF           ++G   +Y G TFHRII
Sbjct: 18  KRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-------RNG---YYNGHTFHRII 67

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
             FM+Q GD T G G GGESI+G +F DE +  L+H  P  LSMANAG +TNGSQFFIT 
Sbjct: 68  KGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITV 126

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAE--GRQNGTPKSKVVVAD 201
           V T WLD +H VFG+V  GM+VV ++       +   P   V + +
Sbjct: 127 VPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  220 bits (562), Expect = 1e-73
 Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 12/135 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G IV+ L+ K  PKT +NF  L    +G        +Y G+ FHRII  FM+QGGD T G
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPT-G 69

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            GRGG SIYG++F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +F
Sbjct: 70  TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129

Query: 171 GKVLSGMDVVYKVEA 185
           G+V  G+ +V +V  
Sbjct: 130 GRVCQGIGMVNRVGM 144

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  217 bits (554), Expect = 7e-73
 Identities = 71/135 (52%), Positives = 90/135 (66%), Gaps = 12/135 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G IV+ L+ K  PKT +NF  L    +G        +Y G+ FHRII  FM+QGGD T G
Sbjct: 21  GIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPT-G 69

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            GRGG SIYG++F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +F
Sbjct: 70  TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIF 129

Query: 171 GKVLSGMDVVYKVEA 185
           G+V  G+ +V +V  
Sbjct: 130 GRVCQGIGMVNRVGM 144

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  212 bits (541), Expect = 2e-70
 Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 12/135 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G   + L+    PKT  NF  LC  E G         Y  + FHR+IP+F++QGGD T G
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPT-G 96

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            G+GG+SIYGE F DE N +LKHTG G+LSM+N GP+TN SQFFIT      LDG+H +F
Sbjct: 97  TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156

Query: 171 GKVLSGMDVVYKVEA 185
            +V   M  +  + +
Sbjct: 157 ARVSKNMTCIENIAS 171

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  199 bits (509), Expect = 1e-65
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 22/146 (15%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G + + L     P+  ++F  LC  +          ++  + FHR I +FM+QGG   L 
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65

Query: 112 D----GRGGESIY-------GEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVT 159
                    +S         G  F DE + +L H G G+LSMAN G  +N S+FFIT  +
Sbjct: 66  QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125

Query: 160 TSWLDGRHVVFGKVLSGMDVVYKVEA 185
              L+ +H +FG+V+ G+DV+ + E 
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWEK 151

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  199 bits (507), Expect = 2e-65
 Identities = 62/157 (39%), Positives = 86/157 (54%), Gaps = 16/157 (10%)

Query: 34  KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGST 93
                 +YF         G +   LF    PK  +NF AL         SG   +YK + 
Sbjct: 8   SSGRENLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS-------ASG---YYKNTI 57

Query: 94  FHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENF-KLKHTGPGLLSMANAG----PDT 148
           FH+ I  F++QGGD T G G+GGESIYG  F DE + +LK+   G+LSMA+ G    P+T
Sbjct: 58  FHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNT 116

Query: 149 NGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA 185
           NGSQFFIT  +   L+G +V+FGK++ G + +  +E 
Sbjct: 117 NGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLEN 153

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  197 bits (503), Expect = 3e-65
 Identities = 67/150 (44%), Positives = 88/150 (58%), Gaps = 14/150 (9%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + +F +  PKT ENF ALC        S    +Y G  FHR I  FM+Q GD T G
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC-------ASN---YYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            GRGG SI+G+KF DE +  LKH   G++SMAN GP+TNGSQFFIT      LD ++ VF
Sbjct: 59  TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 118

Query: 171 GKVLSGMDVVYKVEAE--GRQNGTPKSKVV 198
           GKV+ G++ + ++E      +   P + V 
Sbjct: 119 GKVIDGLETLDELEKLPVNEKTYRPLNDVH 148

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  193 bits (492), Expect = 4e-63
 Identities = 62/135 (45%), Positives = 84/135 (62%), Gaps = 12/135 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G + + L     PKT ENF  LC       K     +Y G+ FHR I +F++QGGD T G
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC-------KKH---YYDGTIFHRSIRNFVIQGGDPT-G 77

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            G GGES +G+ F DE    L HTG G+LSMAN+GP++N SQFFIT  + ++LD +H +F
Sbjct: 78  TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIF 137

Query: 171 GKVLSGMDVVYKVEA 185
           G+V+ G DV+  +E 
Sbjct: 138 GRVVGGFDVLTAMEN 152

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  189 bits (482), Expect = 1e-61
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 13/136 (9%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + L+ K  PK   NF  LC             +Y  + FHR++P F++QGGD T G
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-------LEA---YYDNTIFHRVVPGFIVQGGDPT-G 82

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            G GGESIYG  F DE + +L+    GL++MANAG   NGSQFF T      L+ +H +F
Sbjct: 83  TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIF 142

Query: 171 GKVLS-GMDVVYKVEA 185
           GKV    +  + ++  
Sbjct: 143 GKVTGDTVYNMLRLSE 158

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  180 bits (458), Expect = 6e-58
 Identities = 64/142 (45%), Positives = 77/142 (54%), Gaps = 12/142 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEK-----GIGKSGKPLHYKGSTFHRIIPSFMLQGG 106
           G I + LFG   PKT  NF  L  G K               Y G+ FHR+I  FM+QGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 107 DFTLGDGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDG 165
           D T G GRGG    G KF DE + +L+   P LL+MANAGP TNGSQFFIT   T  L+ 
Sbjct: 93  DPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 166 RHVVFGKVLS--GMDVVYKVEA 185
           RH +FG+V+      VV  +  
Sbjct: 149 RHTIFGEVIDAESQRVVEAISK 170

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  170 bits (433), Expect = 9e-54
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 29/152 (19%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G + + L+ +  P    NF  LC         G   +Y  + FHR++  F++QGGD T G
Sbjct: 31  GDLDVELWARECPLACRNFVQLC-------LEG---YYVNTIFHRVVKDFIVQGGDPT-G 79

Query: 112 DGRGG--ESIYGEKFPDE-NFKLKHTGPGLLSMANAGPD--------------TNGSQFF 154
            GRGG   +  G+ F  E + +LK    GL+ +AN G                TNG+QFF
Sbjct: 80  TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139

Query: 155 ITTVTTSWLDGRHVVFGKVLS-GMDVVYKVEA 185
           IT      L+  + +FGKV    +  + K   
Sbjct: 140 ITLARADVLNNAYTLFGKVTGHTLYNLMKFND 171

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  134 bits (341), Expect = 1e-40
 Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + L     PKT ENF           K G   HY G+ FHR+I  FM+QGG F   
Sbjct: 13  GVIKLELDEAKAPKTVENFLNYV-------KKG---HYDGTIFHRVINGFMIQGGGFE-P 61

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMA-NAGPDTNGSQFFITTVTTSWLDGR--- 166
             +   +       +E N  LK+     ++MA    P +  +QFFI      +L+     
Sbjct: 62  GLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPT 118

Query: 167 -----HVVFGKVLSGMDVVYKVEA 185
                + VFGKV+ G D+V K++A
Sbjct: 119 PQGWGYAVFGKVVEGQDIVDKIKA 142

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  133 bits (337), Expect = 5e-40
 Identities = 46/144 (31%), Positives = 67/144 (46%), Gaps = 24/144 (16%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G IV+  F    P+T +NF   C       + G    Y  + FHR+I  FM+QGG F   
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-------REG---FYNNTIFHRVINGFMIQGGGFE-P 57

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMA-NAGPDTNGSQFFITTVTTSWLDGR--- 166
             +   +   E   +E N  LK+T  G L+MA    P +  +QFFI  V   +L+     
Sbjct: 58  GMKQKAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGES 114

Query: 167 -----HVVFGKVLSGMDVVYKVEA 185
                + VF +V+ GMD V K++ 
Sbjct: 115 LQGWGYCVFAEVVDGMDEVDKIKG 138

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  130 bits (330), Expect = 7e-39
 Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 21/141 (14%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + L  +  P + +NF            SG    Y  +TFHR+IP FM+QGG FT  
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV-------NSG---FYNNTTFHRVIPGFMIQGGGFT-E 62

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMA-NAGPDTNGSQFFITTVTTSWLDGR--- 166
             +  +        +E +  L++T  G ++MA  A  D+  SQFFI     ++LD     
Sbjct: 63  QMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119

Query: 167 --HVVFGKVLSGMDVVYKVEA 185
             + VFGKV+ GMDV  K+  
Sbjct: 120 FGYAVFGKVVKGMDVADKISQ 140

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  118 bits (297), Expect = 3e-32
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 50/208 (24%)

Query: 17  LLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKP-----AGRIVMGLFGKAVPKTAENFR 71
            +      +  +  +N+  +  +   D+++  K           + L G   P TA NF 
Sbjct: 148 DMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFV 207

Query: 72  ALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGD----------FTLGDGRG------ 115
            L   E+          Y G    R    F++Q GD           +    R       
Sbjct: 208 DLV--ERHF--------YDGMEIQRS-DGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIM 256

Query: 116 ----GESIYGEKFPD-----ENFKLKHTGPGLLSMANAG--PDTNGSQFFI-------TT 157
                   YG    +         +     G ++MA      D+  SQ F        T 
Sbjct: 257 VTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTP 316

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEA 185
             ++ LDGR+ VFG V    D +  ++ 
Sbjct: 317 SNSNILDGRYAVFGYVTDNEDFLADLKV 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	96.28
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	95.02
1zx8_A	136	Hypothetical protein TM1367; structural genomics,	80.5

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=6.3e-55  Score=344.79  Aligned_cols=170  Identities=71%  Similarity=1.234  Sum_probs=162.6

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      ++++|||+.+++++.|+|+||||++.||++|+||++||++++|.+..++..||+|+.||||+|+|||||||+..+++.++
T Consensus         3 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg   82 (173)
T 2igv_A            3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG   82 (173)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCCC
Confidence            67999999999999999999999999999999999999988777767788899999999999999999999987888899


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK  196 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~  196 (207)
                      +++|+..+++|+..++|.++|+||||+.+|++++|||||++++.|+||++|+|||||++|||||++|++.++++++|.++
T Consensus        83 ~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~  162 (173)
T 2igv_A           83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKD  162 (173)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSC
T ss_pred             CccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             eEEeeeeeec
Q 028574          197 VVVADSGELP  206 (207)
Q Consensus       197 i~I~~cg~l~  206 (207)
                      |+|.+||+|+
T Consensus       163 v~I~~~g~l~  172 (173)
T 2igv_A          163 CMIADCGQLK  172 (173)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEeEEEc
Confidence            9999999996

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=6.6e-54  Score=340.09  Aligned_cols=172  Identities=57%  Similarity=0.943  Sum_probs=160.0

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCC-CCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~-~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      ..++++|||+++++++.|+|+||||++.||++|+||++||++++|.++. ++..||+|+.||||+|+|+|||||+..+++
T Consensus         4 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g   83 (177)
T 1a58_A            4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   83 (177)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCC
Confidence            3568999999999999999999999999999999999999998876543 456699999999999999999999987888


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCC
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGT  192 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~  192 (207)
                      .+++++|+..+++|+..++|+++|+||||+.+|++++|||||++++.|+||++|+|||||++|||||++|++.++ ++++
T Consensus        84 ~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~  163 (177)
T 1a58_A           84 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  163 (177)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997765 4589


Q ss_pred             cccceEEeeeeeec
Q 028574          193 PKSKVVVADSGELP  206 (207)
Q Consensus       193 P~~~i~I~~cg~l~  206 (207)
                      |.++|+|.+||+|.
T Consensus       164 P~~~v~I~~~G~l~  177 (177)
T 1a58_A          164 PLADVVILNCGELV  177 (177)
T ss_dssp             BSSCEEEEEEEEEC
T ss_pred             CCCCeEEEEeEEEC
Confidence            99999999999984

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=7.6e-54  Score=340.18  Aligned_cols=171  Identities=56%  Similarity=0.954  Sum_probs=160.3

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCC-CCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~-~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      ..++++|||+++++|+.|+|+||||++.||++|+||++||+|++|.++ .++.+||+|+.||||+|+|||||||+..+++
T Consensus         7 ~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g   86 (179)
T 2wfi_A            7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNG   86 (179)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCC
Confidence            457899999999999999999999999999999999999999888763 4577899999999999999999999987888


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCC
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGT  192 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~  192 (207)
                      .+++++|+..+++|+..++|+++|+|+||+.+|++++|||||++++.|+||++|+|||||++|||||++|++.++ ++++
T Consensus        87 ~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~  166 (179)
T 2wfi_A           87 RGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASK  166 (179)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSC
T ss_pred             CCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997765 5689


Q ss_pred             cccceEEeeeeee
Q 028574          193 PKSKVVVADSGEL  205 (207)
Q Consensus       193 P~~~i~I~~cg~l  205 (207)
                      |.++|+|.+||+|
T Consensus       167 P~~~v~I~~~G~l  179 (179)
T 2wfi_A          167 PFAEVRILSCGEL  179 (179)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             CCCCeEEEeCeeC
Confidence            9999999999987

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=4.5e-54  Score=339.01  Aligned_cols=169  Identities=63%  Similarity=1.081  Sum_probs=158.9

Q ss_pred             cCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCC
Q 028574           36 ITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRG  115 (207)
Q Consensus        36 ~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~  115 (207)
                      .+++||||+++++++.|+|+||||++.||++|+||++||+++ |++..++..+|+|+.||||+|+|||||||+..+++.+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            468999999999999999999999999999999999999865 5555566677999999999999999999998788888


Q ss_pred             CccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCccc
Q 028574          116 GESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS  195 (207)
Q Consensus       116 ~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~  195 (207)
                      ++++|+..+++|+..++|.++|+||||+.+|++++|||||++++.++||++|+|||||++|||||++|++.++++++|.+
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~  160 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             ceEEeeeeee
Q 028574          196 KVVVADSGEL  205 (207)
Q Consensus       196 ~i~I~~cg~l  205 (207)
                      +|+|.+||+|
T Consensus       161 ~v~I~~cG~l  170 (170)
T 1qng_A          161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEeceeC
Confidence            9999999987

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=6.4e-54  Score=342.07  Aligned_cols=173  Identities=66%  Similarity=1.082  Sum_probs=161.1

Q ss_pred             cccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCC
Q 028574           32 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG  111 (207)
Q Consensus        32 ~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~  111 (207)
                      .....++++|||+.+++++.|+|+||||++.||++|+||++||++++|+++.++..+|+|+.||||+|+|||||||+..+
T Consensus        14 ~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~   93 (186)
T 2poy_A           14 LYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG   93 (186)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS
T ss_pred             cccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC
Confidence            34567789999999999999999999999999999999999999888877777888899999999999999999999878


Q ss_pred             CCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCC
Q 028574          112 DGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNG  191 (207)
Q Consensus       112 ~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~  191 (207)
                      ++.+++++|+..+++|+..++|.++|+|+||+.+|++++|||||++++.++||++|+|||||++|||||++|++.+++++
T Consensus        94 ~G~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~  173 (186)
T 2poy_A           94 DGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNG  173 (186)
T ss_dssp             SSSCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTS
T ss_pred             CCCCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccceEEeeeee
Q 028574          192 TPKSKVVVADSGE  204 (207)
Q Consensus       192 ~P~~~i~I~~cg~  204 (207)
                      +|.++|+|.+||+
T Consensus       174 ~P~~~v~I~~cG~  186 (186)
T 2poy_A          174 KPTKSVCITASGV  186 (186)
T ss_dssp             CCSSCEEEEEEEC
T ss_pred             CCCCCEEEEeCCC
Confidence            9999999999996

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.5e-53  Score=334.47  Aligned_cols=162  Identities=66%  Similarity=1.147  Sum_probs=154.8

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCccc-ccCCEEEEeecCceeEeccCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLH-YKGSTFHRIIPSFMLQGGDFTLGDGRG  115 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~  115 (207)
                      ++++|||+++++|++|+|+||||++.||++|+||++||+|++|        | |+|+.|||++|+|+|||||+..+++.+
T Consensus         3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g   74 (165)
T 2z6w_A            3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG--------FGYKGSTFHRVIPSFMCQAGDFTNHNGTG   74 (165)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC--------ccCcCCEEEEEECCCEEEeCCccCCCCCC
Confidence            5799999999999999999999999999999999999987665        6 999999999999999999998778888


Q ss_pred             CccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCccc
Q 028574          116 GESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS  195 (207)
Q Consensus       116 ~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~  195 (207)
                      ++++|+..+++|+..++|.++|+|+||+.+|++++|||||++++.++||++|+|||||++|||||++|++.++++++|.+
T Consensus        75 g~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~  154 (165)
T 2z6w_A           75 GKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK  154 (165)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred             CCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCC
Confidence            88999999999998999998999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeeec
Q 028574          196 KVVVADSGELP  206 (207)
Q Consensus       196 ~i~I~~cg~l~  206 (207)
                      +|+|.+||+|+
T Consensus       155 ~v~I~~~g~l~  165 (165)
T 2z6w_A          155 KIVITDCGQLS  165 (165)
T ss_dssp             CEEEEEEEECC
T ss_pred             cEEEEEeEEEC
Confidence            99999999984

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=1.6e-53  Score=336.59  Aligned_cols=166  Identities=63%  Similarity=1.077  Sum_probs=155.8

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      ...++++|||+.+++|+.|+|+||||++.||++|+||++||++++|+       +|+|+.|||++|+|||||||+..+++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g   80 (173)
T 2r99_A            8 ARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF-------GFKGSSFHRIIPQFMCQGGDFTNHNG   80 (173)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             ccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCc-------eecCCEEEEeeCCCEEEeCCcCCCCC
Confidence            34578999999999999999999999999999999999999876652       39999999999999999999987888


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCc
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTP  193 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P  193 (207)
                      .+++++|+..+++|+..++|+++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|
T Consensus        81 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P  160 (173)
T 2r99_A           81 TGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKP  160 (173)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCC
T ss_pred             CCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             ccceEEeeeeeec
Q 028574          194 KSKVVVADSGELP  206 (207)
Q Consensus       194 ~~~i~I~~cg~l~  206 (207)
                      .++|+|.+||+|.
T Consensus       161 ~~~v~I~~cG~l~  173 (173)
T 2r99_A          161 KQKVIIADCGEYV  173 (173)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCeEEEEeeeEC
Confidence            9999999999984

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-53  Score=340.36  Aligned_cols=173  Identities=54%  Similarity=0.898  Sum_probs=160.6

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCC-CCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~-~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      ...+++||||+++++|++|+|+||||++.||++|+||++||+|++|.++ .+|.+||+|+.||||+|+|||||||+..++
T Consensus        16 ~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~~   95 (192)
T 2he9_A           16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGN   95 (192)
T ss_dssp             ---CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             ccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCCC
Confidence            4678899999999999999999999999999999999999999888763 457889999999999999999999998788


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCC
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNG  191 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~  191 (207)
                      +.+++++|+..+++|+..++|.++|+|+||+.+|++++|||||++++.|+||++|+|||||++|||||++|++.++ +++
T Consensus        96 G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~  175 (192)
T 2he9_A           96 GKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAAS  175 (192)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTS
T ss_pred             CCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999997765 568


Q ss_pred             CcccceEEeeeeeec
Q 028574          192 TPKSKVVVADSGELP  206 (207)
Q Consensus       192 ~P~~~i~I~~cg~l~  206 (207)
                      +|..+|+|.+||+|.
T Consensus       176 ~P~~~v~I~~~g~l~  190 (192)
T 2he9_A          176 RPYADVRVIDCGVLA  190 (192)
T ss_dssp             CBSSCEEEEEEEECC
T ss_pred             CCcCCeEEEEeEEEc
Confidence            999999999999985

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.7e-53  Score=336.01  Aligned_cols=164  Identities=59%  Similarity=1.034  Sum_probs=155.7

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCccc-ccCCEEEEeecCceeEeccCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLH-YKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      ..++++|||+.+++|+.|+|+||||++.||++|+||++||++++|        | |+|+.||||+|+|+|||||+..+++
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~G   79 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG--------FGYHNCCFHRVIPQFMCQGGDFVKGDG   79 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC--------ceECCCEEEEEECCCEEEcCCccCCCC
Confidence            457899999999999999999999999999999999999987655        5 9999999999999999999987888


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCc
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTP  193 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P  193 (207)
                      .+++++|+..+++|+..++|.++|+|+||+.+|++++|||||++++.++||++|+|||+|++|||||++|++.++++++|
T Consensus        80 ~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P  159 (172)
T 2cmt_A           80 TGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKV  159 (172)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCC
T ss_pred             CCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCC
Confidence            88999999999999989999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeeeec
Q 028574          194 KSKVVVADSGELP  206 (207)
Q Consensus       194 ~~~i~I~~cg~l~  206 (207)
                      .++|+|.+||+|+
T Consensus       160 ~~~v~I~~~g~l~  172 (172)
T 2cmt_A          160 KEPVIISRCGELI  172 (172)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCEEEEEeEeEC
Confidence            9999999999985

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=3.2e-53  Score=332.59  Aligned_cols=162  Identities=62%  Similarity=1.090  Sum_probs=154.8

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCccc-ccCCEEEEeecCceeEeccCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLH-YKGSTFHRIIPSFMLQGGDFTLGDGRG  115 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~  115 (207)
                      ++++||||.+++|+.|+|+||||++.||++|+||++||+|++|        + |+|+.|||++|+|++||||+..+++.+
T Consensus         2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g   73 (164)
T 3pmp_A            2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG--------FGYKDSIFHRVIPQFMLQGGDFTRHNGTG   73 (164)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC--------CcccCCEEEEEECCCeEEeCCCCCCCCCC
Confidence            5799999999999999999999999999999999999987665        5 999999999999999999977788899


Q ss_pred             CccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCccc
Q 028574          116 GESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS  195 (207)
Q Consensus       116 ~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~  195 (207)
                      ++++++..+++|...++|.++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|.+
T Consensus        74 g~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~  153 (164)
T 3pmp_A           74 GKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNA  153 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             ceEEeeeeeec
Q 028574          196 KVVVADSGELP  206 (207)
Q Consensus       196 ~i~I~~cg~l~  206 (207)
                      +|+|.+||+|.
T Consensus       154 ~v~I~~cg~l~  164 (164)
T 3pmp_A          154 TIKITDCGTVA  164 (164)
T ss_dssp             CEEEEEEEEC-
T ss_pred             CEEEEeCeEEC
Confidence            99999999983

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=7.5e-53  Score=335.67  Aligned_cols=166  Identities=63%  Similarity=1.081  Sum_probs=156.5

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      +..+++||||+.+++++.|+|+||||++.||++|+||++||++++|+       .|+|+.|||++|+|+|||||+..+++
T Consensus        19 ~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g   91 (184)
T 3rdd_A           19 GMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGF-------GYKGSCFHRIIPGFMCQGGDFTRHNG   91 (184)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC-------SSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             cCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCc-------ccCCCEEEEccCCcEEEeCCCCCCCC
Confidence            45679999999999999999999999999999999999999877652       19999999999999999999887888


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCc
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTP  193 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P  193 (207)
                      .+++++++..+++|+..++|+++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|
T Consensus        92 ~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P  171 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKT  171 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCC
T ss_pred             CCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeeeec
Q 028574          194 KSKVVVADSGELP  206 (207)
Q Consensus       194 ~~~i~I~~cg~l~  206 (207)
                      .++|+|.+||+|+
T Consensus       172 ~~~v~I~~cG~l~  184 (184)
T 3rdd_A          172 SKKITIADCGQLE  184 (184)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             cCCeEEEeCeEEC
Confidence            9999999999985

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=7e-53  Score=332.23  Aligned_cols=163  Identities=65%  Similarity=1.075  Sum_probs=153.8

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCccc-ccCCEEEEeecCceeEeccCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLH-YKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~-Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      |..++++|||+.+++|+.|+|+||||++.||++|+||++||+|++|        | |+|+.|||++|+|+|||||+..++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG--------FGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEECCCEEecCCccCCC
Confidence            5678999999999999999999999999999999999999987665        6 999999999999999999977788


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCC-C
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN-G  191 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~-~  191 (207)
                      +.+++++|+..+++|+..++|. +|+||||+.++++++|||||++++.++||++|+|||||++|||||++|++.++.+ +
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~  158 (172)
T 2haq_A           80 GTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHD  158 (172)
T ss_dssp             SSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCC
Confidence            8889999999999998899998 9999999999999999999999999999999999999999999999999877654 5


Q ss_pred             CcccceEEeeeeee
Q 028574          192 TPKSKVVVADSGEL  205 (207)
Q Consensus       192 ~P~~~i~I~~cg~l  205 (207)
                      +|.++|+|.+||+|
T Consensus       159 ~P~~~v~I~~~g~l  172 (172)
T 2haq_A          159 RPVKPVKIVASGEL  172 (172)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             cCCCCeEEEEeEEC
Confidence            99999999999986

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=6.6e-53  Score=334.24  Aligned_cols=169  Identities=56%  Similarity=0.990  Sum_probs=157.1

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      +.++++|||+.+++|+.|+|+||||++.||++|+||++||+++.|.  .++..+|+|+.||||+|+|+|||||+..+++.
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   85 (177)
T 1mzw_A            8 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence            4578999999999999999999999999999999999999876543  23555699999999999999999999878889


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCc
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTP  193 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P  193 (207)
                      +++++|+..+++|+..++|+++|+||||+.+|++++|||||++++.++||++|+|||||++|||||++|++.++ ++++|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P  165 (177)
T 1mzw_A           86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  165 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998776 67999


Q ss_pred             ccceEEeeeeee
Q 028574          194 KSKVVVADSGEL  205 (207)
Q Consensus       194 ~~~i~I~~cg~l  205 (207)
                      .++|+|.+||+|
T Consensus       166 ~~~v~I~~cG~l  177 (177)
T 1mzw_A          166 KLPVVISQCGEM  177 (177)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeceeC
Confidence            999999999987

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=9.1e-53  Score=335.83  Aligned_cols=168  Identities=65%  Similarity=1.087  Sum_probs=158.2

Q ss_pred             cccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCC
Q 028574           32 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG  111 (207)
Q Consensus        32 ~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~  111 (207)
                      ..|.++++||||+.+++++.|+|+||||++.||++|+||++||++++|.       +|+|+.|||++|+|+|||||+..+
T Consensus         7 ~~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~   79 (185)
T 4fru_A            7 KGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF-------GYKDSKFHRVIKDFMIQGGDFTRG   79 (185)
T ss_dssp             EEEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTS
T ss_pred             CCCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC-------eEcCCEEEEeeCCCeEEECCCCCC
Confidence            4578999999999999999999999999999999999999999876542       699999999999999999999888


Q ss_pred             CCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CC
Q 028574          112 DGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QN  190 (207)
Q Consensus       112 ~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~  190 (207)
                      ++.++.++++..+++|+..++|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|+..++ ++
T Consensus        80 ~g~gg~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~  159 (185)
T 4fru_A           80 DGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGR  159 (185)
T ss_dssp             SSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTT
T ss_pred             CCCCCccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998775 46


Q ss_pred             CCcccceEEeeeeeec
Q 028574          191 GTPKSKVVVADSGELP  206 (207)
Q Consensus       191 ~~P~~~i~I~~cg~l~  206 (207)
                      ++|.++|+|.+||+|.
T Consensus       160 ~~P~~~v~I~~~g~l~  175 (185)
T 4fru_A          160 DKPLKDVTIADCGKIE  175 (185)
T ss_dssp             SCBSSCEEEEEEEEEE
T ss_pred             CcCCCCEEEEEceEEe
Confidence            8999999999999985

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.4e-52  Score=335.04  Aligned_cols=168  Identities=64%  Similarity=1.101  Sum_probs=157.0

Q ss_pred             ccccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCccc-ccCCEEEEeecCceeEeccCC
Q 028574           31 QNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLH-YKGSTFHRIIPSFMLQGGDFT  109 (207)
Q Consensus        31 ~~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~-Y~g~~f~rv~~~~~iq~G~~~  109 (207)
                      ...+.+++++|||+.+++|+.|+|+||||++.||++|+||++||+|++|        | |+|+.||||+|+|||||||+.
T Consensus         9 ~~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~   80 (188)
T 3ich_A            9 KKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG--------FGYKNSKFHRVIKDFMIQGGDFT   80 (188)
T ss_dssp             CCSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBCCEEETTTEEEECCTT
T ss_pred             CCCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC--------ccccCCEEEEEECCCEEEcCCcc
Confidence            3456789999999999999999999999999999999999999987665        6 999999999999999999977


Q ss_pred             CCCCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCC
Q 028574          110 LGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ  189 (207)
Q Consensus       110 ~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~  189 (207)
                      .+++.+++++|+..+++|+..++|+++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|++.++.
T Consensus        81 ~~~g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~  160 (188)
T 3ich_A           81 RGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTD  160 (188)
T ss_dssp             TSSSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred             CCCCCCCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcC
Confidence            78888999999999999988999999999999999999999999999999999999999999999999999999987755


Q ss_pred             -CCCcccceEEeeeeeec
Q 028574          190 -NGTPKSKVVVADSGELP  206 (207)
Q Consensus       190 -~~~P~~~i~I~~cg~l~  206 (207)
                       +++|.++|+|.+||+|.
T Consensus       161 ~~~~P~~~v~I~~~~~l~  178 (188)
T 3ich_A          161 SRDKPLKDVIIADCGKIE  178 (188)
T ss_dssp             TTSCBSSCEEEEEEEEEE
T ss_pred             CCCeECCCEEEEEeEEEe
Confidence             46999999999999984

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=6.6e-52  Score=332.38  Aligned_cols=165  Identities=60%  Similarity=0.976  Sum_probs=156.1

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      ..++++|||+.+++|+.|+|+||||++.||++|+||++||++++|+       .|+|+.||||+|+|+|||||+..+++.
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g~   97 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGE-------GYKGSTFHRIIPGFMVQGGDYTAHNGT   97 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTS-------SSTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCC-------cccCCEEEEEeCCCEEEeCCCCCCCCc
Confidence            5678999999999999999999999999999999999999877652       299999999999999999998878889


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcc
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPK  194 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~  194 (207)
                      ++.++++..+++|+..++|+++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|.
T Consensus        98 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~  177 (193)
T 3k2c_A           98 GGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVK  177 (193)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCC
T ss_pred             CCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             --cceEEeeeeeec
Q 028574          195 --SKVVVADSGELP  206 (207)
Q Consensus       195 --~~i~I~~cg~l~  206 (207)
                        ++|+|.+||+|+
T Consensus       178 ~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          178 KGYRIEIRDCGVLG  191 (193)
T ss_dssp             TTCCEEEEEEEECC
T ss_pred             cCccEEEEEceEeC
Confidence              999999999985

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=5e-51  Score=333.96  Aligned_cols=169  Identities=47%  Similarity=0.846  Sum_probs=157.7

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      +.+++||||+.+++++.|+|+||||++.||++|+||++||+++++.+  ++..+|+|+.||||+|+|||||||+..+++.
T Consensus        57 ~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~  134 (229)
T 1z81_A           57 PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHNGS  134 (229)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCCCC
Confidence            35789999999999999999999999999999999999998876543  4566899999999999999999999878889


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEE--eCHHHHHHHHhCCCCC--
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL--SGMDVVYKVEAEGRQN--  190 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi--~G~~vld~I~~~~~~~--  190 (207)
                      +++++|+..+++|+..++|.++|+|+||+.++++++|||||++++.++||++|+|||||+  +|||||++|++.++.+  
T Consensus       135 Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~  214 (229)
T 1z81_A          135 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  214 (229)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             CCCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999  9999999999877655  


Q ss_pred             CCcccceEEeeeeee
Q 028574          191 GTPKSKVVVADSGEL  205 (207)
Q Consensus       191 ~~P~~~i~I~~cg~l  205 (207)
                      ++|.++|+|.+||+|
T Consensus       215 ~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          215 YKPKIPINVVECGEL  229 (229)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CCCCCCeEEEeCeeC
Confidence            899999999999987

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.7e-51  Score=323.62  Aligned_cols=161  Identities=61%  Similarity=1.057  Sum_probs=121.8

Q ss_pred             cCceEEEEEEEC--C---eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCccc-ccCCEEEEeecCceeEeccCC
Q 028574           36 ITNKVYFDVEIA--G---KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLH-YKGSTFHRIIPSFMLQGGDFT  109 (207)
Q Consensus        36 ~~~~~~~di~~~--~---t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~-Y~g~~f~rv~~~~~iq~G~~~  109 (207)
                      ++ ++||||+++  +   |++|+|+||||++.||++|+||++||++++|        + |+|+.|||++|+|||||||+.
T Consensus         2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~   72 (172)
T 2c3b_A            2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG--------EGYRESTFHRIIPNFMIQGGDFT   72 (172)
T ss_dssp             CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECC--
T ss_pred             ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEeCCCEEEeCCcC
Confidence            45 899999998  6   5559999999999999999999999987765        4 999999999999999999976


Q ss_pred             CCCCCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe--CHHHHHHHHhCC
Q 028574          110 LGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS--GMDVVYKVEAEG  187 (207)
Q Consensus       110 ~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~--G~~vld~I~~~~  187 (207)
                      .+++.+++++|+..+++|+..++|+++|+|+||+.+|++++|||||++++.++||++|+|||||++  |||||++|++.+
T Consensus        73 ~~~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~  152 (172)
T 2c3b_A           73 RGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG  152 (172)
T ss_dssp             --------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTC
T ss_pred             CCCCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCC
Confidence            688888999999999999888999999999999999999999999999999999999999999999  999999999888


Q ss_pred             CCCC--CcccceEEeeeeee
Q 028574          188 RQNG--TPKSKVVVADSGEL  205 (207)
Q Consensus       188 ~~~~--~P~~~i~I~~cg~l  205 (207)
                      ++++  +|.++|+|.+||+|
T Consensus       153 t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          153 SSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             CTTSCCCSSSCCEEEEEEEC
T ss_pred             CCCCCccCCCCeEEEeCeeC
Confidence            7665  99999999999986

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1e-48  Score=322.04  Aligned_cols=173  Identities=27%  Similarity=0.434  Sum_probs=147.0

Q ss_pred             cccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCC------CC----CCcccccCCEEEEeecCc
Q 028574           32 NLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG------KS----GKPLHYKGSTFHRIIPSF  101 (207)
Q Consensus        32 ~~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~------~~----~k~~~Y~g~~f~rv~~~~  101 (207)
                      +....++++|||+.+++|+.|+|+||||++.||++|+||++||++++.+-      +.    |+...|+|+.||||+++|
T Consensus         9 p~~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~F   88 (234)
T 2ose_A            9 PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN   88 (234)
T ss_dssp             CCCCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTT
T ss_pred             CcCCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCC
Confidence            34456789999999999999999999999999999999999998762221      00    121239999999999999


Q ss_pred             eeEeccCCCCCCCCCccccCCC-----CCCCCCCCccCCCcEEEeee----cCCCCCCceEEEecCC------CCCCCCC
Q 028574          102 MLQGGDFTLGDGRGGESIYGEK-----FPDENFKLKHTGPGLLSMAN----AGPDTNGSQFFITTVT------TSWLDGR  166 (207)
Q Consensus       102 ~iq~G~~~~~~~~~~~~~~~~~-----~~~e~~~~~h~~~G~v~~~~----~~~~~~~sqF~I~l~~------~~~ld~~  166 (207)
                      ||||||+..+++.+++++|+..     ++  ...++|.++|+||||+    .++++++|||||++++      .++||++
T Consensus        89 miQgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~  166 (234)
T 2ose_A           89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRD  166 (234)
T ss_dssp             EEEECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTT
T ss_pred             EEEcCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCC
Confidence            9999997778888999998877     55  3478898999999999    8999999999999999      8999999


Q ss_pred             ccEEEEEEeCHHHHHHHHhCCC-CCCCcccceEEeeeeeec
Q 028574          167 HVVFGKVLSGMDVVYKVEAEGR-QNGTPKSKVVVADSGELP  206 (207)
Q Consensus       167 ~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~~i~I~~cg~l~  206 (207)
                      |+|||||++|||||++|++.++ ++++|.++|+|.+||+|+
T Consensus       167 ~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~  207 (234)
T 2ose_A          167 QVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL  207 (234)
T ss_dssp             SEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred             eeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence            9999999999999999997665 449999999999999985

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=3.5e-48  Score=338.52  Aligned_cols=170  Identities=63%  Similarity=1.049  Sum_probs=161.0

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCC-CCcccccCCEEEEeecCceeEeccCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRG  115 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~-~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~  115 (207)
                      +++||||+.+++++.|+|+||||++.||+||+||++||++++|++.. |+..+|+|+.||||+|+|||||||+..++|.+
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            78999999999999999999999999999999999999998887643 56678999999999999999999999888999


Q ss_pred             CccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCccc
Q 028574          116 GESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKS  195 (207)
Q Consensus       116 ~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~  195 (207)
                      ++++|+..+++|+..++|+++|+|+|++.+|++++|||||++++.|+||++|+|||+|++||+|+++|+..++..++|..
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~  174 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAK  174 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESS
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988766699999


Q ss_pred             ceEEeeeeeec
Q 028574          196 KVVVADSGELP  206 (207)
Q Consensus       196 ~i~I~~cg~l~  206 (207)
                      +|+|.+||++.
T Consensus       175 ~v~I~~~g~l~  185 (370)
T 1ihg_A          175 LCVIAECGELK  185 (370)
T ss_dssp             CEEEEEEEEEC
T ss_pred             eEEEEEEEEec
Confidence            99999999984

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=4e-47  Score=303.81  Aligned_cols=163  Identities=42%  Similarity=0.655  Sum_probs=142.0

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCC--C---CcccccCCEEEEeecCceeEeccC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS--G---KPLHYKGSTFHRIIPSFMLQGGDF  108 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~--~---k~~~Y~g~~f~rv~~~~~iq~G~~  108 (207)
                      +..+.++.++     |+.|+|+||||++.||++|+||++||+|++++...  +   +.+||+|+.||||+|+|||||||+
T Consensus        20 ~~~~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~   94 (191)
T 1w74_A           20 PLATATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP   94 (191)
T ss_dssp             -CCSEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT
T ss_pred             CCCCeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCC
Confidence            3344455554     77999999999999999999999999999876421  2   357999999999999999999997


Q ss_pred             CCCCCCCCccccCCCCCCCC-CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe--CHHHHHHHHh
Q 028574          109 TLGDGRGGESIYGEKFPDEN-FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS--GMDVVYKVEA  185 (207)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~e~-~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~--G~~vld~I~~  185 (207)
                      . +++.++   ++..+++|. ..++|+++|+|+||+.+|++++|||||++++.|+||++|+|||||++  |||||++|++
T Consensus        95 ~-g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~  170 (191)
T 1w74_A           95 T-GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISK  170 (191)
T ss_dssp             T-SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHT
T ss_pred             C-CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHc
Confidence            5 566665   477899994 58899999999999999999999999999999999999999999999  9999999998


Q ss_pred             CCC-CCCCcccceEEeeeeee
Q 028574          186 EGR-QNGTPKSKVVVADSGEL  205 (207)
Q Consensus       186 ~~~-~~~~P~~~i~I~~cg~l  205 (207)
                      .++ ++++|.++|+|.+|+++
T Consensus       171 ~~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          171 TATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             SCBCTTSCBSSCCEEEEEEEC
T ss_pred             CCcCCCCCcCCCeEEEEEEEC
Confidence            775 56999999999999974

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=2.4e-47  Score=297.80  Aligned_cols=147  Identities=44%  Similarity=0.723  Sum_probs=136.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .+||+|+.|||++|+|+|||||+. +++.+++++|+..+++|.
T Consensus        12 T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   80 (160)
T 2fu0_A           12 TTMGDIHISLFYKECKKTVQNFSVHSI----------NGYYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEF   80 (160)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             ecCccEEEEEeCCCChHHHHHHHHHhc----------cCccCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCCccccc
Confidence            779999999999999999999999994          338999999999999999999986 678888999999999998


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCcccceEEeeeeeec
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKSKVVVADSGELP  206 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~~i~I~~cg~l~  206 (207)
                      . .++|.++|+|+||+.+|++++|||||++++.|+||++|+|||||++|||||++|++.++ ++++|.++|+|.+|.+++
T Consensus        81 ~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v~~  160 (160)
T 2fu0_A           81 FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN  160 (160)
T ss_dssp             BTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEEC-
T ss_pred             cCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEeC
Confidence            7 68998899999999999999999999999999999999999999999999999998775 469999999999998864

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=3.6e-47  Score=298.44  Aligned_cols=152  Identities=49%  Similarity=0.842  Sum_probs=139.6

Q ss_pred             ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574           38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE  117 (207)
Q Consensus        38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~  117 (207)
                      .++.++     |+.|+|+||||++.||++|+||++||+          .+||+|+.|||++|+|+|||||+. +++.+++
T Consensus        12 ~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~   75 (166)
T 2x7k_A           12 PNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGRGGA   75 (166)
T ss_dssp             SEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH----------HTTTTTEECCEEETTTEEEECCTT-SSSSCCC
T ss_pred             CEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHh----------cCCCCCCEEEEEECCCEEEcCCCC-CCCCCCC
Confidence            556665     779999999999999999999999994          348999999999999999999987 6788889


Q ss_pred             cccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCccc
Q 028574          118 SIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKS  195 (207)
Q Consensus       118 ~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~  195 (207)
                      ++|+..+++|.. .++|.++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|+..++ ++++|.+
T Consensus        76 si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~  155 (166)
T 2x7k_A           76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVD  155 (166)
T ss_dssp             CTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSS
T ss_pred             ccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCC
Confidence            999999999984 78998899999999999999999999999999999999999999999999999997775 4489999


Q ss_pred             ceEEeeeeee
Q 028574          196 KVVVADSGEL  205 (207)
Q Consensus       196 ~i~I~~cg~l  205 (207)
                      +|+|.+|.++
T Consensus       156 ~i~I~~~~i~  165 (166)
T 2x7k_A          156 DVKIIKAYPS  165 (166)
T ss_dssp             CCEEEEEEEC
T ss_pred             CeEEEEEEEe
Confidence            9999999876

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=3.3e-47  Score=297.46  Aligned_cols=147  Identities=46%  Similarity=0.697  Sum_probs=136.8

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||++          +||+|+.|||++|+|+|||||+. +++.+++++|+..+++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   75 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCAS----------NYYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEY   75 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhh----------cccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCcccccc
Confidence            7899999999999999999999999943          37999999999999999999987 678888899999999997


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCC--CCcccceEEeeeeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN--GTPKSKVVVADSGEL  205 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~--~~P~~~i~I~~cg~l  205 (207)
                      . .++|+++|+||||+.++++++|||||++++.++||++|+|||||++|||||++|++.++.+  ++|.++|+|.+|.++
T Consensus        76 ~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~  155 (161)
T 2ok3_A           76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             CcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEe
Confidence            5 6889899999999999999999999999999999999999999999999999999877544  899999999999987


Q ss_pred             c
Q 028574          206 P  206 (207)
Q Consensus       206 ~  206 (207)
                      +
T Consensus       156 ~  156 (161)
T 2ok3_A          156 A  156 (161)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=3.5e-47  Score=303.11  Aligned_cols=152  Identities=41%  Similarity=0.668  Sum_probs=139.2

Q ss_pred             EEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCC
Q 028574           43 DVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGE  122 (207)
Q Consensus        43 di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~  122 (207)
                      ++.+. |+.|+|+||||++.||++|+||++||+.          +||+|+.||||+|+|||||||+. +++.+++++|+.
T Consensus        18 ~v~i~-t~~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~   85 (185)
T 2poe_A           18 GVRII-TNYGDLKFELFCSQCPKACKNFLALSAS----------GYYKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGR   85 (185)
T ss_dssp             EEEEE-ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBS
T ss_pred             EEEEE-ecCccEEEEEeCCCCcHHHHHHHHHhcc----------CCCCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCC
Confidence            33344 7899999999999999999999999943          38999999999999999999987 778888899999


Q ss_pred             CCCCCC-CCCccCCCcEEEeeecC----CCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCcccc
Q 028574          123 KFPDEN-FKLKHTGPGLLSMANAG----PDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKSK  196 (207)
Q Consensus       123 ~~~~e~-~~~~h~~~G~v~~~~~~----~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~~  196 (207)
                      .+++|. ..++|+++|+|+||+.+    |++++|||||++++.++||++|+|||||++|||||++|++.++ ++++|.++
T Consensus        86 ~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~  165 (185)
T 2poe_A           86 YFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDE  165 (185)
T ss_dssp             CBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSC
T ss_pred             cccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCC
Confidence            999997 67899899999999998    9999999999999999999999999999999999999998765 55899999


Q ss_pred             eEEeeeeeec
Q 028574          197 VVVADSGELP  206 (207)
Q Consensus       197 i~I~~cg~l~  206 (207)
                      |+|.+|++++
T Consensus       166 v~I~~~~i~~  175 (185)
T 2poe_A          166 IIIKDIVIHS  175 (185)
T ss_dssp             CEEEEEEEEC
T ss_pred             eEEEEEEEEC
Confidence            9999999984

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=8.9e-47  Score=302.83  Aligned_cols=147  Identities=43%  Similarity=0.748  Sum_probs=136.7

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .+||+|+.||||+|+|||||||+. +++.+++++|+..+++|.
T Consensus        26 T~~G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg~si~g~~f~dE~   94 (197)
T 1zkc_A           26 TNKGDLNLELHCDLTPKTCENFIRLCK----------KHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   94 (197)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCCEEEcCCCC-CCCCCCCccCCCcccccc
Confidence            669999999999999999999999994          338999999999999999999987 678888999999999995


Q ss_pred             -CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCC--CCcccceEEeeeeee
Q 028574          129 -FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQN--GTPKSKVVVADSGEL  205 (207)
Q Consensus       129 -~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~--~~P~~~i~I~~cg~l  205 (207)
                       ..++|+.+|+|+||+.++++++|||||++++.++||++|+|||+|++|||||++|+..++..  ++|..+|+|.+|+++
T Consensus        95 ~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~  174 (197)
T 1zkc_A           95 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  174 (197)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             CcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEE
Confidence             67899899999999999999999999999999999999999999999999999999877644  899999999999998


Q ss_pred             c
Q 028574          206 P  206 (207)
Q Consensus       206 ~  206 (207)
                      +
T Consensus       175 ~  175 (197)
T 1zkc_A          175 V  175 (197)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-46  Score=297.91  Aligned_cols=145  Identities=48%  Similarity=0.750  Sum_probs=135.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .+||+|+.|||++|+|+|||||+. +++.+++++|+..+++|.
T Consensus        28 t~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   96 (176)
T 2a2n_A           28 TSMGDIHTKLFPVECPKTVENFCVHSR----------NGYYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEF   96 (176)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             ecCccEEEEEeCCCChHHHHHHHHHhh----------cCccCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCcccccc
Confidence            789999999999999999999999994          338999999999999999999986 678888999999999998


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCC--CCCcccceEEeeeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ--NGTPKSKVVVADSGE  204 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~--~~~P~~~i~I~~cg~  204 (207)
                      . .++|.++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|+..++.  +++|.++|+|.+|.+
T Consensus        97 ~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~v  175 (176)
T 2a2n_A           97 HSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV  175 (176)
T ss_dssp             CTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEEE
T ss_pred             ccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEEE
Confidence            7 689998999999999999999999999999999999999999999999999999987765  799999999999864

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-46  Score=301.72  Aligned_cols=154  Identities=40%  Similarity=0.673  Sum_probs=139.7

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      +.+|.++     |+.|+|+||||++.||++|+||++||+          .+||+|+.|||++|+|+|||||+. +++.++
T Consensus        38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Y~g~~FhRVi~~f~iQgGd~~-~~g~gg  101 (196)
T 2b71_A           38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCE----------MGFYDNTIFHRVIPNFVIQGGDPT-GTGKGG  101 (196)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEEEETT-SSSSCC
T ss_pred             CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCCEEEEEeCCcEEEcCCCC-CCCCCC
Confidence            4566666     779999999999999999999999994          338999999999999999999987 778888


Q ss_pred             ccccCCCCCCCC-CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCcc
Q 028574          117 ESIYGEKFPDEN-FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPK  194 (207)
Q Consensus       117 ~~~~~~~~~~e~-~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~  194 (207)
                      +++|+..+++|. ..++|+++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|++.++ ++++|.
T Consensus       102 ~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~  181 (196)
T 2b71_A          102 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI  181 (196)
T ss_dssp             CBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBS
T ss_pred             CccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCC
Confidence            899999999995 478898999999999999999999999999999999999999999999999999997765 569999


Q ss_pred             cceEEeeeeeec
Q 028574          195 SKVVVADSGELP  206 (207)
Q Consensus       195 ~~i~I~~cg~l~  206 (207)
                      ++|+|.+|.+++
T Consensus       182 ~~i~I~~~~i~~  193 (196)
T 2b71_A          182 FDLKILRTSTAV  193 (196)
T ss_dssp             SCCEEEEEEC--
T ss_pred             CCeEEEEEEEec
Confidence            999999999874

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=2e-46  Score=301.82  Aligned_cols=153  Identities=48%  Similarity=0.833  Sum_probs=140.5

Q ss_pred             ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574           38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE  117 (207)
Q Consensus        38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~  117 (207)
                      .++.++     |++|+|+||||++.||++|+||++||+          .+||+++.||||+|+|+|||||+. +++.+++
T Consensus        12 ~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~----------~g~Ydg~~FhRVi~~F~iQgGd~~-~~g~gg~   75 (203)
T 2k7n_A           12 PNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELAR----------RGYYNGTKFHRIIKDFMIQGGDPT-GTGRGGA   75 (203)
T ss_dssp             SEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHH----------HTCGGGCEEEEEETTTEEEEECSS-SSSSCCC
T ss_pred             CEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHh----------cCccCCCEEEEEeCCcEEEcCCCC-CCCCCCC
Confidence            566666     779999999999999999999999994          348999999999999999999987 6778888


Q ss_pred             cccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCccc
Q 028574          118 SIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKS  195 (207)
Q Consensus       118 ~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P~~  195 (207)
                      ++|+..+++|.. .++|.++|+|+||+.++++++|||||++++.++||++|+|||||++|||||++|+..++ ++++|.+
T Consensus        76 si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~  155 (203)
T 2k7n_A           76 SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVD  155 (203)
T ss_dssp             TTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECC
T ss_pred             ccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCC
Confidence            999999999984 78998899999999999999999999999999999999999999999999999997764 4589999


Q ss_pred             ceEEeeeeeec
Q 028574          196 KVVVADSGELP  206 (207)
Q Consensus       196 ~i~I~~cg~l~  206 (207)
                      +|+|.+|++++
T Consensus       156 ~V~I~~~~v~~  166 (203)
T 2k7n_A          156 DVKIIKAYPSG  166 (203)
T ss_dssp             CCBEEEEEECC
T ss_pred             CeEEEEEEEEe
Confidence            99999999985

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=4.6e-46  Score=300.46  Aligned_cols=154  Identities=32%  Similarity=0.530  Sum_probs=133.3

Q ss_pred             eEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEec-----cCCCCCC
Q 028574           39 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGG-----DFTLGDG  113 (207)
Q Consensus        39 ~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G-----~~~~~~~  113 (207)
                      +.++.+.   |+.|+|+||||++.||++|+||++||+          .+||+|+.||||+|+||||||     |+. +++
T Consensus         6 ~~~v~l~---T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g   71 (201)
T 3bo7_A            6 KGYLRIV---TTQGSLNIELHADMAPRACDSFLRLCA----------VKYFDDTIFHRCIRNFMIQGGRAELRQPS-KKK   71 (201)
T ss_dssp             CEEEEEE---ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEECCGGGCCC-----
T ss_pred             ceEEEEE---eCCCCEEEEEcCCCCcHHHHHHHHHHh----------cCccCCCEEEEeeCCCEEEcCcccccCCC-CCC
Confidence            3444444   668999999999999999999999994          338999999999999999999     887 677


Q ss_pred             CCCcccc-------CCCCCCCC-CCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHh
Q 028574          114 RGGESIY-------GEKFPDEN-FKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA  185 (207)
Q Consensus       114 ~~~~~~~-------~~~~~~e~-~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~  185 (207)
                      .+++++|       +..+++|. ..++|+.+|+|+||+.++++++|||||++++.++||++|+|||+|++|||||++|+.
T Consensus        72 ~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~  151 (201)
T 3bo7_A           72 EVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEK  151 (201)
T ss_dssp             ---CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTT
T ss_pred             CCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHh
Confidence            8888888       78899995 678898999999999999999999999999999999999999999999999999997


Q ss_pred             CCC-CCCCcccceEEeeeeeec
Q 028574          186 EGR-QNGTPKSKVVVADSGELP  206 (207)
Q Consensus       186 ~~~-~~~~P~~~i~I~~cg~l~  206 (207)
                      .++ ++++|.++|+|.+|++|+
T Consensus       152 ~~t~~~~~P~~~i~I~~~~v~~  173 (201)
T 3bo7_A          152 LETDKKDKPLKPPKVEEIIVFK  173 (201)
T ss_dssp             CCBCTTSCBSSCCBEEEEEEEE
T ss_pred             CCcCCCCCcCCCeEEEEEEEEc
Confidence            765 458999999999999984

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=3.7e-45  Score=291.25  Aligned_cols=156  Identities=39%  Similarity=0.674  Sum_probs=140.4

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      ++.+++|+++     |++|+|+||||++.||++|+||++||+          .+||+|+.||||+|+|+|||||+. +++
T Consensus        21 ~~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~-~~g   84 (185)
T 2hq6_A           21 PPTNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPT-GTG   84 (185)
T ss_dssp             CCCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHH----------TTTTTTEECCEEETTTEEEECCTT-SSS
T ss_pred             CCCCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHhh----------cCccCCCEEEEEECCCEEEcCCCC-CCC
Confidence            4566788887     679999999999999999999999994          338999999999999999999986 678


Q ss_pred             CCCccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHH--HHHHhCC-CC
Q 028574          114 RGGESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVV--YKVEAEG-RQ  189 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vl--d~I~~~~-~~  189 (207)
                      .+++++|+..+++|.. .++|+++|+|+||+.++++++|||||++++.++||++|+|||||+ |++++  ++|+..+ ++
T Consensus        85 ~gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~  163 (185)
T 2hq6_A           85 SGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDD  163 (185)
T ss_dssp             SCCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCT
T ss_pred             CCCCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCC
Confidence            8888999999999986 688889999999999999999999999999999999999999999 88875  5777655 46


Q ss_pred             CCCcccceEEeeeeeec
Q 028574          190 NGTPKSKVVVADSGELP  206 (207)
Q Consensus       190 ~~~P~~~i~I~~cg~l~  206 (207)
                      +++|.++|+|.+|++++
T Consensus       164 ~~~P~~~v~I~~~~v~~  180 (185)
T 2hq6_A          164 DERPHNPHKIKSCEVLF  180 (185)
T ss_dssp             TSCBSSCCEEEEEEEEE
T ss_pred             CCCCCCCeEEEEEEEeC
Confidence            79999999999999984

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=5.3e-45  Score=286.39  Aligned_cols=152  Identities=32%  Similarity=0.500  Sum_probs=132.2

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      +++++++     |+.|+|+||||++.||++|+||++||+          .+||+|+.||||+|+|||||||+....+   
T Consensus         4 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~~---   65 (166)
T 1v9t_A            4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVN----------SGFYNNTTFHRVIPGFMIQGGGFTEQMQ---   65 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBEEEEETTTEEEESSBCTTCC---
T ss_pred             CeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhc----------cCCCCCCEEEEEECCcEEEcCCcCcCCC---
Confidence            4567777     789999999999999999999999993          3489999999999999999999874322   


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeec-CCCCCCceEEEecCCCCCCCCC-----ccEEEEEEeCHHHHHHHHhCCCC-
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANA-GPDTNGSQFFITTVTTSWLDGR-----HVVFGKVLSGMDVVYKVEAEGRQ-  189 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~-~~~~~~sqF~I~l~~~~~ld~~-----~~vfG~Vi~G~~vld~I~~~~~~-  189 (207)
                      ...++..+++|.....|+.+|+||||+. +|++++|||||++++.++||++     |+|||+|++|||||++|++.++. 
T Consensus        66 ~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~  145 (166)
T 1v9t_A           66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD  145 (166)
T ss_dssp             BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEE
T ss_pred             CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCC
Confidence            2334677889976555567999999997 5999999999999999999998     99999999999999999987764 


Q ss_pred             ----CCCcccceEEeeeeeec
Q 028574          190 ----NGTPKSKVVVADSGELP  206 (207)
Q Consensus       190 ----~~~P~~~i~I~~cg~l~  206 (207)
                          +++|.++|+|.+|.+++
T Consensus       146 ~~~~~~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          146 VGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             ETTEEEEESSCCBEEEEEECC
T ss_pred             CCccCCCcCCCeEEEEEEEeC
Confidence                37899999999999874

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=5.1e-45  Score=285.96  Aligned_cols=144  Identities=33%  Similarity=0.551  Sum_probs=128.6

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .+||+|+.|||++|+|||||||+..+.   +.++++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~   72 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCR----------EGFYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHh----------cCCCCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccc
Confidence            779999999999999999999999993          348999999999999999999987433   3456788899998


Q ss_pred             CC-CccCCCcEEEeeec-CCCCCCceEEEecCCCCCCCCC--------ccEEEEEEeCHHHHHHHHhCCCC-----CCCc
Q 028574          129 FK-LKHTGPGLLSMANA-GPDTNGSQFFITTVTTSWLDGR--------HVVFGKVLSGMDVVYKVEAEGRQ-----NGTP  193 (207)
Q Consensus       129 ~~-~~h~~~G~v~~~~~-~~~~~~sqF~I~l~~~~~ld~~--------~~vfG~Vi~G~~vld~I~~~~~~-----~~~P  193 (207)
                      .. ++| .+|+||||++ +|++++|||||++++.++||++        |+|||+|++|||||++|++.++.     +++|
T Consensus        73 ~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P  151 (164)
T 1lop_A           73 NNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             cccccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCc
Confidence            64 555 6999999985 7999999999999999999998        99999999999999999987764     4899


Q ss_pred             ccceEEeeeeeec
Q 028574          194 KSKVVVADSGELP  206 (207)
Q Consensus       194 ~~~i~I~~cg~l~  206 (207)
                      .++|+|.+|++++
T Consensus       152 ~~~v~I~~~~v~~  164 (164)
T 1lop_A          152 KEDVIIESVTVSE  164 (164)
T ss_dssp             SSCCEEEEEEECC
T ss_pred             CCCeEEEEEEEeC
Confidence            9999999999874

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=4.8e-44  Score=281.30  Aligned_cols=144  Identities=31%  Similarity=0.483  Sum_probs=126.0

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||++.||++|+||++||+          .+||+|+.|||++|+|||||||+....   +...++..+++|.
T Consensus        10 T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Y~g~~FhRvi~~f~iQgGd~~~~~---~~~~~~~~~~~E~   76 (167)
T 3s6m_A           10 TNHGVIKLELDEAKAPKTVENFLNYVK----------KGHYDGTIFHRVINGFMIQGGGFEPGL---KQKPTDAPIANEA   76 (167)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHH----------HTTTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCG
T ss_pred             eCCceEEEEEeCCCCcHHHHHHHHHhh----------hcccCCCEeEEecCCcEEEeccccCCC---CCCCCCCccCCcc
Confidence            789999999999999999999999994          348999999999999999999987432   2234567788886


Q ss_pred             CCCccCCCcEEEeee-cCCCCCCceEEEecCCCCCCCCC--------ccEEEEEEeCHHHHHHHHhCCCC-----CCCcc
Q 028574          129 FKLKHTGPGLLSMAN-AGPDTNGSQFFITTVTTSWLDGR--------HVVFGKVLSGMDVVYKVEAEGRQ-----NGTPK  194 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~-~~~~~~~sqF~I~l~~~~~ld~~--------~~vfG~Vi~G~~vld~I~~~~~~-----~~~P~  194 (207)
                      ....++.+|+|+||+ .+|++++|||||++++.++||++        |+|||||++|||||++|++.+++     +++|.
T Consensus        77 ~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~  156 (167)
T 3s6m_A           77 NNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPN  156 (167)
T ss_dssp             GGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBS
T ss_pred             cccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcC
Confidence            543344799999999 57999999999999999999998        99999999999999999987754     48999


Q ss_pred             cceEEeeeeee
Q 028574          195 SKVVVADSGEL  205 (207)
Q Consensus       195 ~~i~I~~cg~l  205 (207)
                      ++|+|.+|.+|
T Consensus       157 ~~v~I~~~~il  167 (167)
T 3s6m_A          157 DDVVIEKAVVV  167 (167)
T ss_dssp             SCCEEEEEEEC
T ss_pred             CCeEEEEEEEC
Confidence            99999999875

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=8.6e-44  Score=292.22  Aligned_cols=157  Identities=32%  Similarity=0.537  Sum_probs=139.1

Q ss_pred             ccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574           33 LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        33 ~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      .++.+.+|.++     |++|+|+||||++.||++|+||++||+.          +||+|+.||||+|+|||||||+. ++
T Consensus        17 ~p~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~----------g~Ydgt~FhRVi~~FmiQgGdp~-~~   80 (232)
T 3bkp_A           17 QGSTRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLCLE----------GYYVNTIFHRVVKDFIVQGGDPT-GT   80 (232)
T ss_dssp             CCSCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHH----------TTTTTCBEEEEETTTEEEECCTT-SS
T ss_pred             cCCCCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHhhc----------CccCCCEEEEEeCCCEEEcCCCC-CC
Confidence            34566777777     7799999999999999999999999943          38999999999999999999987 77


Q ss_pred             CCCCcccc--CCCCCCCCC-CCccCCCcEEEeeecCC--------------CCCCceEEEecCCCCCCCCCccEEEEEEe
Q 028574          113 GRGGESIY--GEKFPDENF-KLKHTGPGLLSMANAGP--------------DTNGSQFFITTVTTSWLDGRHVVFGKVLS  175 (207)
Q Consensus       113 ~~~~~~~~--~~~~~~e~~-~~~h~~~G~v~~~~~~~--------------~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~  175 (207)
                      +.+++++|  +..+++|.. .++|+.+|+|+||+.++              ++++|||||++++.++||++|+|||+|+ 
T Consensus        81 G~Gg~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-  159 (232)
T 3bkp_A           81 GRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-  159 (232)
T ss_dssp             SSCCCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-
T ss_pred             CCCCCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-
Confidence            88888898  888999976 68888999999999986              6999999999999999999999999999 


Q ss_pred             CHHH--HHHHHhCCC-CCCCcccceEEeeeeeec
Q 028574          176 GMDV--VYKVEAEGR-QNGTPKSKVVVADSGELP  206 (207)
Q Consensus       176 G~~v--ld~I~~~~~-~~~~P~~~i~I~~cg~l~  206 (207)
                      ||++  +++|+..++ ++++|..+|+|.+|++|+
T Consensus       160 g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~  193 (232)
T 3bkp_A          160 GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLW  193 (232)
T ss_dssp             GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEE
T ss_pred             eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEc
Confidence            7765  889997764 678999999999999984

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-38  Score=274.73  Aligned_cols=157  Identities=25%  Similarity=0.379  Sum_probs=129.9

Q ss_pred             cccccccccCceEEEEEEEC-----CeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCce
Q 028574           28 KSDQNLKEITNKVYFDVEIA-----GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFM  102 (207)
Q Consensus        28 ~~~~~~~~~~~~~~~di~~~-----~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~  102 (207)
                      ..+...|.++.++++++.+.     .++.|+|+||||++.||+||+||++||+          .+||+|+.|||+ ++||
T Consensus       159 ~~y~~~P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~----------~GfYdGt~FHRV-~gFm  227 (369)
T 3rfy_A          159 EEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVE----------RHFYDGMEIQRS-DGFV  227 (369)
T ss_dssp             SSCTTSCEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHH----------TTTTTTEECEEE-EEEE
T ss_pred             hhcccCccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhh----------cCCcCCCeeeee-CCee
Confidence            45567788888988888775     2358999999999999999999999993          348999999999 9999


Q ss_pred             eEeccCCCCCCCC---------------------CccccCCCCCCCC-----CCCccCCCcEEEeeec--CCCCCCceEE
Q 028574          103 LQGGDFTLGDGRG---------------------GESIYGEKFPDEN-----FKLKHTGPGLLSMANA--GPDTNGSQFF  154 (207)
Q Consensus       103 iq~G~~~~~~~~~---------------------~~~~~~~~~~~e~-----~~~~h~~~G~v~~~~~--~~~~~~sqF~  154 (207)
                      |||||+. +++.+                     +.++|+..+++|+     ..++|+.+|+|+||+.  ++++++||||
T Consensus       228 IQgGDp~-g~G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFF  306 (369)
T 3rfy_A          228 VQTGDPE-GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVF  306 (369)
T ss_dssp             ECCCCCC-CCCSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCC
T ss_pred             EecCCCC-CCCCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEE
Confidence            9999987 44443                     2345556666654     2578889999999997  7999999999


Q ss_pred             Eec-------CCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccceEEee
Q 028574          155 ITT-------VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVAD  201 (207)
Q Consensus       155 I~l-------~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~i~I~~  201 (207)
                      |++       ++.++||++|+|||+|++|||||++|+.     +.....|+|.+
T Consensus       307 Itl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~-----GD~I~sv~I~~  355 (369)
T 3rfy_A          307 WLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV-----GDVIESIQVVS  355 (369)
T ss_dssp             CCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCT-----TCEEEEEEEEE
T ss_pred             EEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhC-----CCceEEEEEec
Confidence            999       4689999999999999999999999986     34456666665

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=96.28  E-value=0.039  Score=42.73  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=69.1

Q ss_pred             EEEEEEECCeeee-eEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecC--ceeEeccCCCCCCCCC
Q 028574           40 VYFDVEIAGKPAG-RIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPS--FMLQGGDFTLGDGRGG  116 (207)
Q Consensus        40 ~~~di~~~~t~~G-~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~--~~iq~G~~~~~~~~~~  116 (207)
                      .|++|.+..  .| .++.+|..+.||+||+.|.++.             =|.+..+|-..-+  .|+--++..       
T Consensus        22 r~i~itl~~--~g~~~~A~Lldd~APkTcaA~~~~L-------------P~~~~viHarwSGeeVy~~lp~f~-------   79 (188)
T 3kop_A           22 RYINITLEK--RGVTCKALLLDDVAPRTSKAVWDAL-------------PQSSQVFHGKYARNEIYNLVPAFA-------   79 (188)
T ss_dssp             CEEEEEETT--TTEEEEEEECTTTSHHHHHHHHHHC-------------CEEEECEECSSSSSEEEEEEECCS-------
T ss_pred             eEEEEEEec--CCeEEEEEEccccChHHHHHHHHhC-------------CCCcceEEEEEecceEEEECCccc-------
Confidence            467777653  34 3889999999999999999987             1444444444333  233333321       


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeec-----C-------C------CCCCceEEEecCCCCC-CCCC-----ccEEEE
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANA-----G-------P------DTNGSQFFITTVTTSW-LDGR-----HVVFGK  172 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~-----~-------~------~~~~sqF~I~l~~~~~-ld~~-----~~vfG~  172 (207)
                          ....+.|+.... ..+|-|++-..     +       +      .....++.|-.+.... ++++     -.+|++
T Consensus        80 ----~~~~g~EN~T~~-P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~T  154 (188)
T 3kop_A           80 ----PKEPGAENTTVT-PIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFAT  154 (188)
T ss_dssp             ----SSCCCSCSEESS-CCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEE
T ss_pred             ----ccCCCcCCCCCC-CCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEE
Confidence                012344555432 24788776311     1       0      1112467776665442 2222     379999


Q ss_pred             EEeCHHHHHHHH
Q 028574          173 VLSGMDVVYKVE  184 (207)
Q Consensus       173 Vi~G~~vld~I~  184 (207)
                      |++|+|-|.++-
T Consensus       155 IveGle~la~~c  166 (188)
T 3kop_A          155 IVEGLDEMAAAC  166 (188)
T ss_dssp             EEESHHHHHHHH
T ss_pred             EecCHHHHHHHH
Confidence            999999887764

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=95.02  E-value=0.029  Score=42.53  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             EEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCcccc
Q 028574           41 YFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIY  120 (207)
Q Consensus        41 ~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~  120 (207)
                      -+.|.+++   ..++++|+.+.||++|+.|+++.             =+... +.+. .+..+ + +..           
T Consensus        31 ~I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~L-------------Pl~~~-~~~~-g~E~y-~-~lp-----------   79 (153)
T 2nnz_A           31 RLRIRFES---AECEVELYEEWAPETVRAIADAL-------------PIKST-ANRW-GDEIY-F-TTQ-----------   79 (153)
T ss_dssp             CEEEEETT---EEEEECCCTTSCHHHHHHHHHTC-------------SEEEE-EEEE-TTEEE-E-CCS-----------
T ss_pred             EEEEEECC---EEEEEEEcCCCCHHHHHHHHHhC-------------CcEEE-HHhh-CCcEE-E-ECC-----------
Confidence            35566675   67999999999999999999987             02222 1121 11100 0 000           


Q ss_pred             CCCCCC-CCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCC------CccEEEEEEeCHHHHHHHH
Q 028574          121 GEKFPD-ENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDG------RHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       121 ~~~~~~-e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~------~~~vfG~Vi~G~~vld~I~  184 (207)
                       ..++. |+.. .....|-|+.-..+.     .+.|-.++.|...+      .-.+||+|.+|++.|.++.
T Consensus        80 -~~l~~~en~~-~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~  143 (153)
T 2nnz_A           80 -VAVEKEENSK-DVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVA  143 (153)
T ss_dssp             -CCCCCSSCCB-CCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred             -CCCCCCCCCc-ccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhCC
Confidence             00111 2222 233578888755433     37777777653322      2478999999977776543

>1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A

Probab=80.50  E-value=4.9  Score=29.52  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=54.8

Q ss_pred             eeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCC-CCCCC
Q 028574           52 GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFP-DENFK  130 (207)
Q Consensus        52 G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~-~e~~~  130 (207)
                      ..++.+|+..  |.|++.|++..      ........|. ..++-..|..                      ++ +|+..
T Consensus        22 ~~v~a~L~Dn--p~Ta~~~~~~L------Pl~~~~~~~g-~E~y~~~p~~----------------------l~~~e~~~   70 (136)
T 1zx8_A           22 GKCVIDLNEE--YEVVKLLKEKI------PFESVVNTWG-EEIYFSTPVN----------------------VQKMENPR   70 (136)
T ss_dssp             CEEEEEEETT--SHHHHHHHHHC------SEEEECEESS-SEEEEECSCC----------------------CCCCSSEE
T ss_pred             cEEEEEEcCC--HHHHHHHHHHC------CcEEEHHHhC-CcEEEECCcc----------------------CCCCCCCC
Confidence            6799999754  88999999987      1111222342 2322222211                      11 11111


Q ss_pred             CccCCCcEEEeeecCCCCCCceEEEecCCCCCCCC------CccEEEEEEeCHHHHHHHH
Q 028574          131 LKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDG------RHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       131 ~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~------~~~vfG~Vi~G~~vld~I~  184 (207)
                       .-...|-|+.-..+.     -|.|-.++.|...+      .-.+||||.+|++.|.++.
T Consensus        71 -~~~~~GDIaYw~pgg-----~LaIFyg~~p~s~~e~~~a~~v~~lGrI~~~l~~l~~v~  124 (136)
T 1zx8_A           71 -EVVEIGDVGYWPPGK-----ALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIK  124 (136)
T ss_dssp             -SSBCTTEEEEEGGGT-----EEEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCC
T ss_pred             -ccCCCCcEEEeCCCC-----EEEEEeCCCccccCccccCcCcEEEEEEccCHHHHhhCC
Confidence             113468888765543     37777777754332      3689999999977665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-64
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	9e-62
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	6e-61
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	7e-61
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-59
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	3e-56
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	9e-55
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	2e-53
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	3e-53
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-52
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	7e-51
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	2e-50
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	8e-50
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	1e-42
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	1e-41
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-36
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	9e-36
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	6e-30
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-29
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	2e-29
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-27
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	5e-25

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  195 bits (495), Expect = 2e-64
 Identities = 120/168 (71%), Positives = 141/168 (83%)

Query: 38  NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRI 97
           +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRI
Sbjct: 4   SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63

Query: 98  IPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           IP+FM+QGGDFT G+G GGESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ T
Sbjct: 64  IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
           V T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+L
Sbjct: 124 VKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  187 bits (476), Expect = 9e-62
 Identities = 107/165 (64%), Positives = 124/165 (75%), Gaps = 7/165 (4%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            V+FD+   G P G I   LF   VPKTA NFRALCTGEKG G       Y GS FHR+I
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FMLQGGDFT G+G GG+SIYG KF DENF+LKH  PGLLSMANAGP+TNGSQFFITTV
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSG 203
            TSWLDG+HVVFG+V+ GM+VV  +EAEG  +G P+S++ +A  G
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  185 bits (471), Expect = 6e-61
 Identities = 106/167 (63%), Positives = 121/167 (72%), Gaps = 1/167 (0%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           KV+FD+ I    AGRI+  LF    P+T ENFRALCTGEK     GK LHYK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRII 63

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGD T G+G GGESIYG  F DENF +KH  PGLLSMANAGP+TN SQFFIT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
              WLDG+HVVFGKV+ GM+VV ++E EG ++G  K  VV+ D GEL
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  185 bits (471), Expect = 7e-61
 Identities = 99/169 (58%), Positives = 118/169 (69%), Gaps = 2/169 (1%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRI 97
           +V+ DV I G  AGRIVM L+    P+T  NF  LCTG  G GK SGKPLHYKGSTFHR+
Sbjct: 5   RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 64

Query: 98  IPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           I +FM+QGGDFT GDG GGESIYG  F DE F +KH  P ++SMAN GP+TNGSQFFITT
Sbjct: 65  IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 124

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGEL 205
                L+  HVVFGKV+SG +VV K+E  +      P + VV+ + GEL
Sbjct: 125 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  183 bits (464), Expect = 2e-59
 Identities = 107/169 (63%), Positives = 125/169 (73%), Gaps = 1/169 (0%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-SGKPLHYKGSTFHRI 97
           +V+FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG  +GKPLH+KG  FHRI
Sbjct: 16  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75

Query: 98  IPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
           I  FM+QGGDF+  +G GGESIYGEKF DENF  KH   GLLSMANAG +TNGSQFFITT
Sbjct: 76  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGELP 206
           V T  LDG+HVVFG+V+ GM V   +E    +   P    V+A+ GEL 
Sbjct: 136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELK 184

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (439), Expect = 3e-56
 Identities = 107/167 (64%), Positives = 126/167 (75%), Gaps = 7/167 (4%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            VY DV+  GKP GR+V+ L    VPKTAENFRALCTGEKG         YKGSTFHR+I
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF-------GYKGSTFHRVI 56

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           PSFM Q GDFT  +G GG+SIYG +FPDENF LKH GPG+LSMANAGP+TNGSQFFI T+
Sbjct: 57  PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 116

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGEL 205
            T WLDG+HVVFG V+ GMDVV K+E+ G ++G    K+V+ D G+L
Sbjct: 117 KTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 163

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  170 bits (432), Expect = 9e-55
 Identities = 113/174 (64%), Positives = 127/174 (72%), Gaps = 8/174 (4%)

Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
           ++T++VYFD+EI GKP GRIV+GLFGK VPKTA NF  L    KG G       Y GS F
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF 56

Query: 95  HRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I  FM+QGGDFT GDG GG SIYGEKF DENFKLKH G G LSMANAG DTNGSQFF
Sbjct: 57  HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116

Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSGELPL 207
           ITTV T WLDGRHVVFGK+L GMDVV K+E  E      PK  V++A SG + +
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  167 bits (423), Expect = 2e-53
 Identities = 105/174 (60%), Positives = 124/174 (71%), Gaps = 8/174 (4%)

Query: 35  EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTF 94
            +T+KV+FDV I  K  GRIV+GLFG  VPKT ENF AL TGEKG G       YKGS F
Sbjct: 5   SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIF 57

Query: 95  HRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFF 154
           HR+I  FM+QGGDFT  DG GG SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFF
Sbjct: 58  HRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 117

Query: 155 ITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-NGTPKSKVVVADSGELPL 207
           IT    +WLDG+HVVFGKVL GM VV+ +E +    +  P +   + +SG++ +
Sbjct: 118 ITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  166 bits (420), Expect = 3e-53
 Identities = 105/166 (63%), Positives = 127/166 (76%), Gaps = 7/166 (4%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           +VY D++I  KPAGRI M L    VP TAENFR LCT EKG         +KGS+FHRII
Sbjct: 3   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF-------GFKGSSFHRII 55

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
           P FM QGGDFT  +G GG+SIYG+KF DENF LKHTGPGLLSMAN+GP+TNGSQFF+T  
Sbjct: 56  PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 115

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 204
            T WLDG+HVVFG+V  G+DV+ ++EA+G ++G PK KV++AD GE
Sbjct: 116 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 161

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  164 bits (416), Expect = 1e-52
 Identities = 96/168 (57%), Positives = 115/168 (68%), Gaps = 3/168 (1%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            V+FDV I G+  GR+ + LF   VPKTAENFR  CTGE    K G P+ YKGSTFHR+I
Sbjct: 8   VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTFHRVI 65

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             FM+QGGDF  GDG G  SIY   F DENFKL+H+ PGLLSMAN+GP TNG QFFIT  
Sbjct: 66  KDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCS 125

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKSKVVVADSGEL 205
              WLDG+HVVFGK++ G+ V+ K+E      N  PK  VV++  GE+
Sbjct: 126 KCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  160 bits (405), Expect = 7e-51
 Identities = 97/177 (54%), Positives = 118/177 (66%), Gaps = 16/177 (9%)

Query: 38  NKVYFDVEIA-----GKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGS 92
           ++V+FDVE A         GRIV  LF K VPKTA+NFR LC    G         Y+ S
Sbjct: 2   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYRES 54

Query: 93  TFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
           TFHRIIP+FM+QGGDFT G+G GG SIYG+KF DENF  KH   G+LSMANAGP+TNGSQ
Sbjct: 55  TFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQ 114

Query: 153 FFITTVTTSWLDGRHVVFGKVL--SGMDVVYKVEAEGRQNGT--PKSKVVVADSGEL 205
           FFITT  TSWLDG+HVVFG+V       VV ++EA G  +G+    ++  + + GEL
Sbjct: 115 FFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  159 bits (403), Expect = 2e-50
 Identities = 79/171 (46%), Positives = 104/171 (60%), Gaps = 6/171 (3%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            V+ D+ +     G+    LF   VPKT+ENFR  CTG      +  P+ YK + FHR+I
Sbjct: 18  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTG--EYKVNNLPVGYKNTIFHRVI 75

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             FM+QGGDF   +G G  SIYGEKF DENF +KH   GLLSMAN+GP+TNG QFFITT 
Sbjct: 76  KEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 135

Query: 159 TTSWLDGRHVVFGKVLSG--MDVVYKVEAE--GRQNGTPKSKVVVADSGEL 205
              WLDG++VVFG+++    + ++ K+E          PK  + V + GEL
Sbjct: 136 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  157 bits (398), Expect = 8e-50
 Identities = 102/174 (58%), Positives = 123/174 (70%), Gaps = 9/174 (5%)

Query: 33  LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGS 92
           +  +T+KVYFD+ I  +P GR+V+GLFG  VPKT ENF+ L +GE G G       YKGS
Sbjct: 1   MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGS 53

Query: 93  TFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQ 152
            FHR+I +FM+QGGDFT  DG GG+SIYG +F DEN K+KH   G +SMANAGP++NGSQ
Sbjct: 54  IFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQ 112

Query: 153 FFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTPKSKVVVADSGEL 205
           FF+TT  T WLDGRHVVFGKV+ GMDVV KVE      N  PK  V + D G L
Sbjct: 113 FFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (352), Expect = 1e-42
 Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 14/151 (9%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G + + L     PKT ENF  LC             +Y G+ FHR I +F++QGGD T G
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT-G 58

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            G GGES +G+ F DE    L HTG G+LSMAN+GP++N SQFFIT  + ++LD +H +F
Sbjct: 59  TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIF 118

Query: 171 GKVLSGMDVVYKVEAE--GRQNGTPKSKVVV 199
           G+V+ G DV+  +E      +   PK ++ +
Sbjct: 119 GRVVGGFDVLTAMENVESDPKTDRPKEEIRI 149

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 1e-41
 Identities = 75/163 (46%), Positives = 96/163 (58%), Gaps = 18/163 (11%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
            VY +  +     G IV+ L+ K  PKT +NF  L              +Y G+ FHRII
Sbjct: 13  NVYLETSM-----GIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRII 57

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITT 157
             FM+QGGD T G GRGG SIYG++F DE +  LK TG G+L+MANAGPDTNGSQFF+T 
Sbjct: 58  KDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTL 116

Query: 158 VTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVV 199
             T WLDG+H +FG+V  G+ +V +V   E      P   V +
Sbjct: 117 APTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  124 bits (311), Expect = 1e-36
 Identities = 63/156 (40%), Positives = 79/156 (50%), Gaps = 11/156 (7%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSG-----KPLHYKGSTFHRIIPSFMLQGG 106
           G I + LFG   PKT  NF  L  G K               Y G+ FHR+I  FM+QGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 107 DFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGR 166
           D T G GRGG     +   + + +L+   P LL+MANAGP TNGSQFFIT   T  L+ R
Sbjct: 73  DPT-GTGRGGP--GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 167 HVVFGKVLS--GMDVVYKVEAEGRQ-NGTPKSKVVV 199
           H +FG+V+      VV  +       N  P   VV+
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 165

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 9e-36
 Identities = 67/153 (43%), Positives = 89/153 (58%), Gaps = 14/153 (9%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + +F +  PKT ENF ALC             +Y G  FHR I  FM+Q GD T G
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 112 DGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
            GRGG SI+G+KF DE +  LKH   G++SMAN GP+TNGSQFFIT      LD ++ VF
Sbjct: 59  TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 118

Query: 171 GKVLSGMDVVYKVEA--EGRQNGTPKSKVVVAD 201
           GKV+ G++ + ++E      +   P + V + D
Sbjct: 119 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  106 bits (266), Expect = 6e-30
 Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 16/173 (9%)

Query: 33  LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGS 92
           +K  T + Y  +       G   + L+    PKT  NF  LC              Y  +
Sbjct: 10  MKGHTERGYITIYT---NLGDFEVELYWYHSPKTCLNFYTLCEMG----------FYDNT 56

Query: 93  TFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGS 151
            FHR+IP+F++QGGD T G G+GG+SIYGE F DE N +LKHTG G+LSM+N GP+TN S
Sbjct: 57  IFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSS 115

Query: 152 QFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEA-EGRQNGTPKSKVVVADSG 203
           QFFIT      LDG+H +F +V   M  +  + + +      P   + +  + 
Sbjct: 116 QFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  105 bits (261), Expect = 2e-29
 Identities = 65/150 (43%), Positives = 83/150 (55%), Gaps = 13/150 (8%)

Query: 52  GRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLG 111
           G I + LF K   KT +NF                 +Y    FHR+I  FM+Q GD + G
Sbjct: 11  GDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-G 59

Query: 112 DGRGGESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVF 170
           DG GGESI+G +F DE F  L H+ P ++SMAN GP+TNGSQFFITTV   WLD +H VF
Sbjct: 60  DGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVF 119

Query: 171 GKVLSGMDVVYKVEA-EGRQNGTPKSKVVV 199
           GKV  G  +V  +E     +   P   + +
Sbjct: 120 GKVTQGSKIVLDIEKVRTDKRDKPLEDIKI 149

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-29
 Identities = 65/165 (39%), Positives = 80/165 (48%), Gaps = 12/165 (7%)

Query: 39  KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRII 98
           K   D  I     G I   LF    PKT ENF              +  +Y G TFHRII
Sbjct: 6   KRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHRII 55

Query: 99  PSFMLQGGDFTLGDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTV 158
             FM+Q GD T     G     GE   + +  L+H  P  LSMANAG +TNGSQFFIT V
Sbjct: 56  KGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVV 115

Query: 159 TTSWLDGRHVVFGKVLSGMDVVYKVEA--EGRQNGTPKSKVVVAD 201
            T WLD +H VFG+V  GM+VV ++       +   P   V + +
Sbjct: 116 PTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 160

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 27/163 (16%)

Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTL 110
            G IV+  F    P+T +NF   C          +   Y  + FHR+I  FM+QGG F  
Sbjct: 8   HGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEP 57

Query: 111 GDGRGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTV--------TTS 161
           G  +       E   +E N  LK+T   L       P +  +QFFI  V          S
Sbjct: 58  GMKQK---ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGES 114

Query: 162 WLDGRHVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVV 199
                + VF +V+ GMD V K++       G     PK  V++
Sbjct: 115 LQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 93.9 bits (232), Expect = 5e-25
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 22/166 (13%)

Query: 51  AGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTL 110
           AG I + L  +  P + +NF                  Y  +TFHR+IP FM+QGG FT 
Sbjct: 13  AGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTFHRVIPGFMIQGGGFTE 62

Query: 111 GDGRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLD-----G 165
              +   +   +   D    L++T   +     A  D+  SQFFI     ++LD      
Sbjct: 63  QMQQKKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120

Query: 166 RHVVFGKVLSGMDVVYKVEA-----EGRQNGTPKSKVVVADSGELP 206
            + VFGKV+ GMDV  K+        G     P   VV+  +  LP
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1zx8a1	124	Hypothetical protein TM1367 {Thermotoga maritima [	85.59

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=7.9e-51  Score=319.61  Aligned_cols=170  Identities=71%  Similarity=1.234  Sum_probs=161.9

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      ++|||||++++++++|+|+||||.+.||++|+||++||+++.++...+|.++|+++.|||+++++++|+|++..+++.++
T Consensus         3 ~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~~~   82 (172)
T d2igva1           3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGG   82 (172)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCCCC
Confidence            68999999999999999999999999999999999999998887777788999999999999999999999988888888


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK  196 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~  196 (207)
                      ...++..+++|.....|+.+|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|+++
T Consensus        83 ~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~  162 (172)
T d2igva1          83 ESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKD  162 (172)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSC
T ss_pred             cccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCCC
Confidence            88888889999888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeeeec
Q 028574          197 VVVADSGELP  206 (207)
Q Consensus       197 i~I~~cg~l~  206 (207)
                      |+|.+||+|.
T Consensus       163 i~I~~cG~l~  172 (172)
T d2igva1         163 CMIADCGQLK  172 (172)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEeccccC
Confidence            9999999985

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=3.4e-49  Score=309.64  Aligned_cols=168  Identities=63%  Similarity=1.062  Sum_probs=155.7

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      +++|||||++++|++|+|+||||++.||++|+||++||++++.. ...+.++|+++.|||+++++++|+|+...+++.++
T Consensus         3 r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~-~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~~   81 (170)
T d1qnga_           3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGG   81 (170)
T ss_dssp             SCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhcccccc-ccCccCccCcccceEEEeCceEEecCccCCCCCCC
Confidence            68999999999999999999999999999999999999876432 23467799999999999999999999887777777


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK  196 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~  196 (207)
                      ...++..++++...+.|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++.++++++|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~  161 (170)
T d1qnga_          82 ESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRS  161 (170)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSC
T ss_pred             cccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCccC
Confidence            77788888888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeeee
Q 028574          197 VVVADSGEL  205 (207)
Q Consensus       197 i~I~~cg~l  205 (207)
                      |+|++||+|
T Consensus       162 i~I~~CG~l  170 (170)
T d1qnga_         162 VVITDCGEL  170 (170)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEeeEcC
Confidence            999999997

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=304.06  Aligned_cols=161  Identities=65%  Similarity=1.103  Sum_probs=150.2

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      +++|||||+++++++|+|+||||.+.||++|+||++||++.+       .++|+++.|||++|++++|+|+.....+.++
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~-------~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~   73 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK-------GFGFKGSSFHRIIPQFMCQGGDFTNHNGTGG   73 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhcc-------ccccCCcEEEEEEEeeeEEeeeccCCCCCCC
Confidence            478999999999999999999999999999999999997653       3489999999999999999999987777777


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK  196 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~  196 (207)
                      ...++...+++....+|+.+|+++|++.++++++|||||++++.++||++|+|||||++|||||++|+..++++++|.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~  153 (161)
T d2r99a1          74 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQK  153 (161)
T ss_dssp             CBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSC
T ss_pred             ccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCC
Confidence            77777777888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeee
Q 028574          197 VVVADSGE  204 (207)
Q Consensus       197 i~I~~cg~  204 (207)
                      |+|++||+
T Consensus       154 i~I~~CGe  161 (161)
T d2r99a1         154 VIIADCGE  161 (161)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            99999996

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-48  Score=304.66  Aligned_cols=163  Identities=65%  Similarity=1.124  Sum_probs=152.1

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      +++|||||+++++++|+|+||||++.||++|+||++||++++       ..+|+++.|||+++++++|+|+.....+.++
T Consensus         2 n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-------~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~   74 (164)
T d2z6wa1           2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-------GFGYKGSTFHRVIPSFMCQAGDFTNHNGTGG   74 (164)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-------CcccCCcEEEEecccceEecCCccCCCCCCC
Confidence            579999999999999999999999999999999999997653       3479999999999999999999887777777


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccc
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSK  196 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~  196 (207)
                      ...++..++++.....|+.+|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++.++++++|.++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~  154 (164)
T d2z6wa1          75 KSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKK  154 (164)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSC
T ss_pred             ccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCC
Confidence            77788888888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeeeec
Q 028574          197 VVVADSGELP  206 (207)
Q Consensus       197 i~I~~cg~l~  206 (207)
                      |+|.+||+|.
T Consensus       155 i~I~~cG~l~  164 (164)
T d2z6wa1         155 IVITDCGQLS  164 (164)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEeCeecC
Confidence            9999999984

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-48  Score=310.60  Aligned_cols=173  Identities=62%  Similarity=1.029  Sum_probs=159.8

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCC-CCCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~-~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      .+-++++|||++++++++|+|+||||.+.||++|+||++||+++.+.. ..+|..+|+++.|||+++++++|+|+.....
T Consensus        11 ~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~   90 (195)
T d1ihga2          11 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQN   90 (195)
T ss_dssp             CTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCC
Confidence            345799999999999999999999999999999999999998876554 3467789999999999999999999988777


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCC
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGT  192 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~  192 (207)
                      +.++...++..+++|.....|+.+|+++|++.++++++|||||++++.++||++|+|||||++|||||++|++.++++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~  170 (195)
T d1ihga2          91 GTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEK  170 (195)
T ss_dssp             SSCCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTE
T ss_pred             CCCCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCC
Confidence            77777777888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEeeeeeec
Q 028574          193 PKSKVVVADSGELP  206 (207)
Q Consensus       193 P~~~i~I~~cg~l~  206 (207)
                      |.++|+|.+||+|+
T Consensus       171 P~~~i~I~~cG~l~  184 (195)
T d1ihga2         171 PAKLCVIAECGELK  184 (195)
T ss_dssp             ESSCEEEEEEEEEC
T ss_pred             cCCCeEEEECcccC
Confidence            99999999999985

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3.5e-48  Score=301.73  Aligned_cols=160  Identities=66%  Similarity=1.159  Sum_probs=150.5

Q ss_pred             ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574           38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE  117 (207)
Q Consensus        38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~  117 (207)
                      .+||||++++++++|+|+||||++.||++|+||++||+++.++       +|+++.|||++|++++|+|++..+++.++.
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            3689999999999999999999999999999999999876543       599999999999999999999877777777


Q ss_pred             cccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCCCCCCcccce
Q 028574          118 SIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKV  197 (207)
Q Consensus       118 ~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~~~~~P~~~i  197 (207)
                      ..+...+++|...+.|+.+|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|+..++++++|.++|
T Consensus        75 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i  154 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRI  154 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCE
T ss_pred             ccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCe
Confidence            77788888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeee
Q 028574          198 VVADSGE  204 (207)
Q Consensus       198 ~I~~cg~  204 (207)
                      +|.+|||
T Consensus       155 ~I~~cgv  161 (162)
T d2cfea1         155 EIAKCGV  161 (162)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeEc
Confidence            9999997

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=1.2e-47  Score=303.97  Aligned_cols=166  Identities=62%  Similarity=1.043  Sum_probs=154.4

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      |.++++||||++++++++|+|+||||.+.||++|+||++||+++       |..+|+++.|||+++++++|+|++...++
T Consensus         4 p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~-------k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~   76 (182)
T d2rmca_           4 PSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGE-------KGYGYKGSIFHRVIKDFMIQGGDFTARDG   76 (182)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTT-------TSCSSTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcC-------CCccccCceeeeeecCceEEcCCCCCCCC
Confidence            57899999999999999999999999999999999999999776       34479999999999999999999887777


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCC
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGT  192 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~  192 (207)
                      .++...++..++++.....|+.+|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++.+ +++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~  156 (182)
T d2rmca_          77 TGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDR  156 (182)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCc
Confidence            77777888888888888888899999999999999999999999999999999999999999999999999766 68899


Q ss_pred             cccceEEeeeeeec
Q 028574          193 PKSKVVVADSGELP  206 (207)
Q Consensus       193 P~~~i~I~~cg~l~  206 (207)
                      |.++|+|.+||+|+
T Consensus       157 P~~~v~I~~~g~l~  170 (182)
T d2rmca_         157 PLTDCTIVNSGKID  170 (182)
T ss_dssp             BSSCEEEEEEEEEE
T ss_pred             CCCCeEEEEeeEEe
Confidence            99999999999995

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=2e-47  Score=300.52  Aligned_cols=169  Identities=58%  Similarity=0.967  Sum_probs=154.8

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCC-CCCCcccccCCEEEEeecCceeEeccCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIG-KSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRG  115 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~-~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~  115 (207)
                      +++||||++++++++|+|+||||+|.||++|+||++||+++.+.+ ..+|.++|+++.|||+++++++|+|+...+++.+
T Consensus         3 ~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~~   82 (174)
T d1a33a_           3 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTG   82 (174)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCCC
Confidence            679999999999999999999999999999999999999887766 3567889999999999999999999988777777


Q ss_pred             CccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcc
Q 028574          116 GESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPK  194 (207)
Q Consensus       116 ~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~  194 (207)
                      +.+.+.....++....+|+++|+++|++.++++++|||||++++.|+||++|+|||||++|||||++|++.+ +++++|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~  162 (174)
T d1a33a_          83 GESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPL  162 (174)
T ss_dssp             CCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCC
Confidence            666666666677778889999999999999999999999999999999999999999999999999999766 5789999


Q ss_pred             cceEEeeeeee
Q 028574          195 SKVVVADSGEL  205 (207)
Q Consensus       195 ~~i~I~~cg~l  205 (207)
                      ++|+|.+||+|
T Consensus       163 ~~i~I~~cGel  173 (174)
T d1a33a_         163 ADVVILNCGEL  173 (174)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeeEEE
Confidence            99999999997

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.6e-47  Score=298.95  Aligned_cols=165  Identities=60%  Similarity=1.029  Sum_probs=148.4

Q ss_pred             ccccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574           33 LKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        33 ~~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      +|.++++|||||+++++++|+|+||||.+.||++|+||++||+++.+.       +|+++.|||+++++++|+|+....+
T Consensus         1 ~p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~   73 (166)
T d1xo7a_           1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF-------GYKGSIFHRVIRNFMIQGGDFTNFD   73 (166)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc-------cccCcEEEEEcCCCEEEeCCCCCCC
Confidence            478899999999999999999999999999999999999999776432       4999999999999999999988777


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCC
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNG  191 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~  191 (207)
                      +.++...++...+++.... |+.+|+|+|++.++++++|||||+++++++||++|+|||||++|||+|++|++.+ ++++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~-~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  152 (166)
T d1xo7a_          74 GTGGKSIYGTRFDDENLKI-KHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLND  152 (166)
T ss_dssp             SSCCCBTTBSCBCCCCCCS-CCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCCCCCCcccccccccc-cccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCC
Confidence            7777766666666665544 4479999999999999999999999999999999999999999999999999765 5779


Q ss_pred             CcccceEEeeeeee
Q 028574          192 TPKSKVVVADSGEL  205 (207)
Q Consensus       192 ~P~~~i~I~~cg~l  205 (207)
                      +|.++|+|.+||+|
T Consensus       153 ~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         153 KPKKAVKINDCGVL  166 (166)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCEEEEeeEeC
Confidence            99999999999997

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=1.1e-47  Score=304.17  Aligned_cols=166  Identities=66%  Similarity=1.094  Sum_probs=154.1

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      |.++++|||||+++++++|+|+||||.+.||++|+||++||+++       +..+|+++.|||+++++++|+|+...+++
T Consensus         3 p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g-------~~~~y~g~~f~rv~~~~~iq~G~~~~~~~   75 (182)
T d1h0pa_           3 PKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKP-------KGEGYPGSKFHRVIADFMIQGGDFTRGDG   75 (182)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSC-------TTTSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhc-------ccCCcCCceEEEEEecceEEcCCCCCCCC
Confidence            57899999999999999999999999999999999999999765       34489999999999999999999987888


Q ss_pred             CCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCC
Q 028574          114 RGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGT  192 (207)
Q Consensus       114 ~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~  192 (207)
                      .++...++..++++.....|+.+|+++|++.++++++|||||++++.++||++|+|||||++|||+|++|++.. +++++
T Consensus        76 ~g~~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~  155 (182)
T d1h0pa_          76 TGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDR  155 (182)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTE
T ss_pred             CCCCCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCC
Confidence            88888888888888888888899999999999999999999999999999999999999999999999999765 56689


Q ss_pred             cccceEEeeeeeec
Q 028574          193 PKSKVVVADSGELP  206 (207)
Q Consensus       193 P~~~i~I~~cg~l~  206 (207)
                      |+++|+|.+||+|.
T Consensus       156 P~~~v~I~~cG~l~  169 (182)
T d1h0pa_         156 PKQDVIIAASGHIA  169 (182)
T ss_dssp             ESSCEEEEEEEEEE
T ss_pred             CCCCEEEEECCeEe
Confidence            99999999999985

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=2e-46  Score=294.49  Aligned_cols=169  Identities=57%  Similarity=1.001  Sum_probs=148.1

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      +.+++||||++++++++|+|+||||.+.||++|+||++||+.+.  ...++...|+++.|||+++++++|+|+...+.+.
T Consensus         4 ~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~--~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           4 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF--RKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCC--EETTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccc--cccCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            46789999999999999999999999999999999999996431  1112333499999999999999999998766655


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC-CCCCc
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR-QNGTP  193 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~-~~~~P  193 (207)
                      .....+...++++.....|+.+|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|++.++ ++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            55555666677777777888899999999999999999999999999999999999999999999999998764 77999


Q ss_pred             ccceEEeeeeee
Q 028574          194 KSKVVVADSGEL  205 (207)
Q Consensus       194 ~~~i~I~~cg~l  205 (207)
                      .++|+|.+||+|
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999997

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.7e-45  Score=292.48  Aligned_cols=169  Identities=47%  Similarity=0.830  Sum_probs=152.7

Q ss_pred             ccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCC
Q 028574           35 EITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGR  114 (207)
Q Consensus        35 ~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~  114 (207)
                      +-+++||||++++++++|+|+||||.|.||++|+||++||+++.+  ..++...|+|+.|||+++++++|+|+.....+.
T Consensus        14 ~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~--~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~   91 (186)
T d1z81a1          14 PSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYK--VNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGS   91 (186)
T ss_dssp             TTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCB--SSSSBCSSTTEECCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccc--cCCcccccCCCeeeeeecceeeecCCccccCCc
Confidence            447899999999999999999999999999999999999987643  233455699999999999999999998776677


Q ss_pred             CCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeC--HHHHHHHHhCCC--CC
Q 028574          115 GGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSG--MDVVYKVEAEGR--QN  190 (207)
Q Consensus       115 ~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G--~~vld~I~~~~~--~~  190 (207)
                      .....++..++++.....|+.+|+++|++.++++++|||||++++.|+||++|+|||||++|  ||+|++|+..++  .+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~  171 (186)
T d1z81a1          92 GSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI  171 (186)
T ss_dssp             CCCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT
T ss_pred             ccccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCC
Confidence            77777788888888889999999999999999999999999999999999999999999998  999999997664  46


Q ss_pred             CCcccceEEeeeeee
Q 028574          191 GTPKSKVVVADSGEL  205 (207)
Q Consensus       191 ~~P~~~i~I~~cg~l  205 (207)
                      ++|..+|+|.+||+|
T Consensus       172 ~~P~~~i~I~~CGel  186 (186)
T d1z81a1         172 YKPKIPINVVECGEL  186 (186)
T ss_dssp             CCBSSCEEEEEEEEC
T ss_pred             CccCCCEEEEeCCcC
Confidence            899999999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=1.5e-44  Score=283.42  Aligned_cols=161  Identities=60%  Similarity=1.026  Sum_probs=118.7

Q ss_pred             ceEEEEEE-----ECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCC
Q 028574           38 NKVYFDVE-----IAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGD  112 (207)
Q Consensus        38 ~~~~~di~-----~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~  112 (207)
                      ++|||||+     ++.|++|+|+||||.+.||++|+||++||+++.+       ..|+++.|||+++++++|+|++..++
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~-------~~y~~~~f~ri~~~~~iq~G~~~~~~   74 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG-------EGYRESTFHRIIPNFMIQGGDFTRGN   74 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT-------TSSTTCBCCEEETTTEEEECC-----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccc-------ccccCceeeEEEEEEeeEcCCccCCC
Confidence            57999998     5668999999999999999999999999976532       24999999999999999999988777


Q ss_pred             CCCCccccCCCCCCCCCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEe--CHHHHHHHHhCCCCC
Q 028574          113 GRGGESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLS--GMDVVYKVEAEGRQN  190 (207)
Q Consensus       113 ~~~~~~~~~~~~~~e~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~--G~~vld~I~~~~~~~  190 (207)
                      +.++...++..+.++...+.|+.+|+|+|++.++++++|||||++++.|+||++|+|||||++  |||||++|++.++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~  154 (171)
T d2c3ba1          75 GTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSS  154 (171)
T ss_dssp             -----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCC
Confidence            777777777777777788888899999999999999999999999999999999999999994  999999999888765


Q ss_pred             C--CcccceEEeeeeee
Q 028574          191 G--TPKSKVVVADSGEL  205 (207)
Q Consensus       191 ~--~P~~~i~I~~cg~l  205 (207)
                      +  +|..+|.|.+||+|
T Consensus       155 g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         155 GSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             SCCCSSSCCEEEEEEEC
T ss_pred             CCcCCCCCEEEEeCccC
Confidence            4  68889999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-43  Score=270.22  Aligned_cols=147  Identities=45%  Similarity=0.671  Sum_probs=130.0

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |++|+|+||||++.||++|+||++||++          ++|+++.|||++++++||+|+.... ..++...++...+.|.
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~----------g~Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~   75 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALCAS----------NYYNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEY   75 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHHhh----------hcccceeEecccCCeEEEeCCcccc-CCCCcccCCCcccccc
Confidence            7799999999999999999999999954          3799999999999999999998743 3444555666677664


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC--CCCCcccceEEeeeeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR--QNGTPKSKVVVADSGEL  205 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~--~~~~P~~~i~I~~cg~l  205 (207)
                      . .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.++  ++++|.++|+|.+|.+|
T Consensus        76 ~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~  155 (159)
T d2ok3a1          76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (159)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             ccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEE
Confidence            4 57888999999999999999999999999999999999999999999999999997654  45899999999999998


Q ss_pred             c
Q 028574          206 P  206 (207)
Q Consensus       206 ~  206 (207)
                      +
T Consensus       156 ~  156 (159)
T d2ok3a1         156 A  156 (159)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=268.53  Aligned_cols=147  Identities=43%  Similarity=0.753  Sum_probs=133.4

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |++|+|+||||.+.||++|+||++||+          .++|+|+.|||+++++++|+|+.. .++.++...++..+++|.
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~----------~~~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~   75 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCK----------KHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   75 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHh----------cCCcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCcc
Confidence            569999999999999999999999994          348999999999999999999976 456677777788888885


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC--CCCCcccceEEeeeeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR--QNGTPKSKVVVADSGEL  205 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~--~~~~P~~~i~I~~cg~l  205 (207)
                      . .++|..+|+|+|+++++++++|||||+++++++||++|+|||||++|||+|++|++..+  ++++|.++|+|.+|.+|
T Consensus        76 ~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il  155 (178)
T d1zkca1          76 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  155 (178)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             ccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE
Confidence            4 68888899999999999999999999999999999999999999999999999997754  56899999999999997


Q ss_pred             c
Q 028574          206 P  206 (207)
Q Consensus       206 ~  206 (207)
                      +
T Consensus       156 ~  156 (178)
T d1zkca1         156 V  156 (178)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-42  Score=268.55  Aligned_cols=151  Identities=49%  Similarity=0.860  Sum_probs=135.4

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      .++|+++     |++|+|+||||.+.||++|+||++||          +.+||+++.|||+++++++|+|++. +.+.++
T Consensus        11 ~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~----------~~g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~   74 (166)
T d1xwna1          11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELA----------RRGYYNGTKFHRIIKDFMIQGGDPT-GTGRGG   74 (166)
T ss_dssp             CCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHH----------HHTSSTTCCEEEEETTTEEEECCST-TTTSSC
T ss_pred             CCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHH----------hcCCcCceeeeEEcccEEEEeCCCC-CCCCCC
Confidence            3678887     88999999999999999999999999          3448999999999999999999986 556666


Q ss_pred             ccccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcc
Q 028574          117 ESIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPK  194 (207)
Q Consensus       117 ~~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~  194 (207)
                      ...++..+++|.. .+.|+++|+|+|+++++++++|||||++++.++||++|+|||||++|||||++|+... +++++|.
T Consensus        75 ~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~  154 (166)
T d1xwna1          75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPV  154 (166)
T ss_dssp             CCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBS
T ss_pred             ccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCC
Confidence            7777778887754 6788889999999999999999999999999999999999999999999999999766 6889999


Q ss_pred             cceEEeeee
Q 028574          195 SKVVVADSG  203 (207)
Q Consensus       195 ~~i~I~~cg  203 (207)
                      ++|+|.++-
T Consensus       155 ~~I~I~~a~  163 (166)
T d1xwna1         155 DDVKIIKAY  163 (166)
T ss_dssp             SCCCEEEEE
T ss_pred             CCeEEEEee
Confidence            999999863

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2e-41  Score=261.38  Aligned_cols=144  Identities=45%  Similarity=0.756  Sum_probs=131.0

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |++|+|+||||.+.||++|+||++||++          +||+|+.|||+++++++|+|++. +.+.++.+.++..+++|.
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~----------g~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~   76 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSIN----------GYYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEF   76 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhC----------CccccceeeeeeecceeeccCCC-CCCcCCcccCCCcccccc
Confidence            7799999999999999999999999954          37999999999999999999987 455666777788888876


Q ss_pred             C-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 028574          129 F-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKSKVVVADSG  203 (207)
Q Consensus       129 ~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~~i~I~~cg  203 (207)
                      . .+.|.++|+++|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+ +++++|+++|+|.+|-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~  153 (155)
T d2fu0a1          77 FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIK  153 (155)
T ss_dssp             BTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEE
T ss_pred             ccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEE
Confidence            6 5788888999999999999999999999999999999999999999999999999776 6889999999999984

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=3.7e-41  Score=263.47  Aligned_cols=152  Identities=41%  Similarity=0.715  Sum_probs=132.5

Q ss_pred             ceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCc
Q 028574           38 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGE  117 (207)
Q Consensus        38 ~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~  117 (207)
                      ++.|+.+.   |++|+|+||||++.||++|+||++||+          .+||+++.|||+++++++|+|+.. +...++.
T Consensus        15 ~~~~V~l~---T~~G~i~IeL~~d~aP~tv~nF~~L~~----------~g~Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~   80 (169)
T d2b71a1          15 ERGYITIY---TNLGDFEVELYWYHSPKTCLNFYTLCE----------MGFYDNTIFHRVIPNFVIQGGDPT-GTGKGGK   80 (169)
T ss_dssp             HSCEEEEE---ETTEEEEEEECTTTSHHHHHHHHHHHH----------TTTTTTEEEEEEETTTEEEEEETT-SSSSCCC
T ss_pred             cccEEEEE---eCceeEEEEEeCCCCcHHHHHHHHHhh----------CCccceeeeccccceeeEeccccc-cccCCCc
Confidence            34466666   448999999999999999999999993          348999999999999999999986 3344455


Q ss_pred             cccCCCCCCCCC-CCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCC-CCCCCccc
Q 028574          118 SIYGEKFPDENF-KLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEG-RQNGTPKS  195 (207)
Q Consensus       118 ~~~~~~~~~e~~-~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~-~~~~~P~~  195 (207)
                      ..+...+++|.. .++|.++|+++|++.++++++|||||++++.|+||++|+|||||++|||||++|++.. +++++|..
T Consensus        81 ~~~~~~~~~e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~  160 (169)
T d2b71a1          81 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIF  160 (169)
T ss_dssp             BTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSS
T ss_pred             cccccccccccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCC
Confidence            556666777754 6888899999999999999999999999999999999999999999999999999765 67899999


Q ss_pred             ceEEeeee
Q 028574          196 KVVVADSG  203 (207)
Q Consensus       196 ~i~I~~cg  203 (207)
                      +|+|.+|+
T Consensus       161 ~i~I~~~~  168 (169)
T d2b71a1         161 DLKILRTS  168 (169)
T ss_dssp             CCEEEEEE
T ss_pred             CeEEEEcc
Confidence            99999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.9e-41  Score=260.54  Aligned_cols=152  Identities=33%  Similarity=0.501  Sum_probs=129.4

Q ss_pred             CceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCC
Q 028574           37 TNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGG  116 (207)
Q Consensus        37 ~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~  116 (207)
                      +++|.++     |+.|+|+||||++.||++|+||++||+.          +||+|+.|||+++++++|+|+.....+.+ 
T Consensus         4 ~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~~----------~~Y~g~~fhRv~~~~~iq~G~~~~~~~~~-   67 (166)
T d1v9ta_           4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNS----------GFYNNTTFHRVIPGFMIQGGGFTEQMQQK-   67 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBEEEEETTTEEEESSBCTTCCBC-
T ss_pred             CCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHhhC----------CccccceeeEEEEEeecccCCcCCccccc-
Confidence            4567776     7899999999999999999999999943          48999999999999999999977544333 


Q ss_pred             ccccCCCCCCCCCCCccCCCcEEEeee-cCCCCCCceEEEecCCCCCCCCC-----ccEEEEEEeCHHHHHHHHhCCCC-
Q 028574          117 ESIYGEKFPDENFKLKHTGPGLLSMAN-AGPDTNGSQFFITTVTTSWLDGR-----HVVFGKVLSGMDVVYKVEAEGRQ-  189 (207)
Q Consensus       117 ~~~~~~~~~~e~~~~~h~~~G~v~~~~-~~~~~~~sqF~I~l~~~~~ld~~-----~~vfG~Vi~G~~vld~I~~~~~~-  189 (207)
                        .++..+++|.....|+.+|.|+|++ .++++++|||||++++.++||+.     |+|||+|++|||+|++|+..+++ 
T Consensus        68 --~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~  145 (166)
T d1v9ta_          68 --KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD  145 (166)
T ss_dssp             --CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEE
T ss_pred             --CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccC
Confidence              3466778887765566799999988 45899999999999999998864     89999999999999999977643 


Q ss_pred             ----CCCcccceEEeeeeeec
Q 028574          190 ----NGTPKSKVVVADSGELP  206 (207)
Q Consensus       190 ----~~~P~~~i~I~~cg~l~  206 (207)
                          +++|+++|+|.+|++|+
T Consensus       146 ~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         146 VGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             ETTEEEEESSCCBEEEEEECC
T ss_pred             CCCCCCccCCCeEEEEEEEcC
Confidence                35899999999999985

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-40  Score=255.00  Aligned_cols=155  Identities=43%  Similarity=0.658  Sum_probs=130.2

Q ss_pred             cccCceEEEEEEECCeeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCC
Q 028574           34 KEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDG  113 (207)
Q Consensus        34 ~~~~~~~~~di~~~~t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~  113 (207)
                      .....++.+.     |+.|+|+||||.+.||++|+||++||+          .++|+|+.|||+++++++|+|++.....
T Consensus         6 ~~~~~~a~~~-----T~~G~i~ieL~~~~aP~tv~nF~~l~~----------~g~Y~g~~f~rv~~~~~iq~G~~~~~~~   70 (164)
T d2a2na1           6 KRVSDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSR----------NGYYNGHTFHRIIKGFMIQTGDPTGTGM   70 (164)
T ss_dssp             CCCCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHH----------TTTTTTCBCCEEETTTEEEECCTTSSSS
T ss_pred             ccccCEEEEE-----eceeEEEEEEcCCCChHHHHHHHHHHh----------CCCcccceeeEEeeeeeEeecccccccC
Confidence            3445566665     889999999999999999999999993          4489999999999999999999874433


Q ss_pred             CCCccccCCCCCCC-CCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEEeCHHHHHHHHhCCC--CC
Q 028574          114 RGGESIYGEKFPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGR--QN  190 (207)
Q Consensus       114 ~~~~~~~~~~~~~e-~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi~G~~vld~I~~~~~--~~  190 (207)
                      .+.. .....++.+ ...++|+++|+++|++.++++++|||||++++.++||++|+|||+|++|||+|++|++.++  ++
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~  149 (164)
T d2a2na1          71 GGES-IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKT  149 (164)
T ss_dssp             CCCC-TTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTT
T ss_pred             CCce-eeecccccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCC
Confidence            3222 223334443 4567888999999999999999999999999999999999999999999999999997765  45


Q ss_pred             CCcccceEEeeeee
Q 028574          191 GTPKSKVVVADSGE  204 (207)
Q Consensus       191 ~~P~~~i~I~~cg~  204 (207)
                      ++|..+|+|.+|.+
T Consensus       150 ~~P~~~V~I~~v~i  163 (164)
T d2a2na1         150 DKPYEDVSIINITV  163 (164)
T ss_dssp             CCBSSCCBEEEEEE
T ss_pred             CCcCCCcEEEEEEE
Confidence            89999999999864

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-39  Score=251.22  Aligned_cols=152  Identities=44%  Similarity=0.696  Sum_probs=128.8

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCC-----CCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGK-----SGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEK  123 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~-----~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~  123 (207)
                      |+.|+|+||||+|.||++|+||++||+++++.+.     ..+..+|+++.|||+++++++|+|++.. .+.++.   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            7799999999999999999999999988765532     1244589999999999999999999763 233322   223


Q ss_pred             CCCC-CCCCccCCCcEEEeeecCCCCCCceEEEecCCCCCCCCCccEEEEEE--eCHHHHHHHHhCC-CCCCCcccceEE
Q 028574          124 FPDE-NFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVL--SGMDVVYKVEAEG-RQNGTPKSKVVV  199 (207)
Q Consensus       124 ~~~e-~~~~~h~~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~Vi--~G~~vld~I~~~~-~~~~~P~~~i~I  199 (207)
                      +++| ...++|+++|+++|++.++++++|||||++++.|+||++|+|||||+  ||||||++|++.+ +++++|+.+|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4444 45678889999999999999999999999999999999999999999  5999999999766 678999999999


Q ss_pred             eeeee
Q 028574          200 ADSGE  204 (207)
Q Consensus       200 ~~cg~  204 (207)
                      .++.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99864

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-38  Score=245.91  Aligned_cols=145  Identities=31%  Similarity=0.500  Sum_probs=121.2

Q ss_pred             eeeeeEEEEEeCCCCchhHHHHHHHhcCCCCCCCCCCcccccCCEEEEeecCceeEeccCCCCCCCCCccccCCCCCCCC
Q 028574           49 KPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGEKFPDEN  128 (207)
Q Consensus        49 t~~G~ivieL~~~~aP~~~~nF~~l~~~~~g~~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~e~  128 (207)
                      |+.|+|+||||.+.||++|+||++||          +.++|+|+.|||+++++++|+|+.....+.   ..++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~----------~~g~Y~g~~fhrv~~~~~iq~G~~~~~~~~---~~~~~~~~~e~   72 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHH----------HTTTTTTEECCEEETTTEEEESSEETTTEE---CCCCCCBCCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHH----------HccCcCCceeeEEcCCceeeeeccccCCcC---CccCCCccccc
Confidence            77999999999999999999999999          344899999999999999999987643322   22356677776


Q ss_pred             CCCccCCCcEEEeeec-CCCCCCceEEEecCCC--------CCCCCCccEEEEEEeCHHHHHHHHhCCCC-C----CCcc
Q 028574          129 FKLKHTGPGLLSMANA-GPDTNGSQFFITTVTT--------SWLDGRHVVFGKVLSGMDVVYKVEAEGRQ-N----GTPK  194 (207)
Q Consensus       129 ~~~~h~~~G~v~~~~~-~~~~~~sqF~I~l~~~--------~~ld~~~~vfG~Vi~G~~vld~I~~~~~~-~----~~P~  194 (207)
                      ....++.+|.|+|+++ ++++++|||||++.+.        +++|++|+|||+|++|||+|++|++.++. .    ++|+
T Consensus        73 ~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~  152 (164)
T d1lopa_          73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_dssp             CSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEES
T ss_pred             cccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcC
Confidence            5444556899999975 5899999999999875        67899999999999999999999977642 2    4899


Q ss_pred             cceEEeeeeeec
Q 028574          195 SKVVVADSGELP  206 (207)
Q Consensus       195 ~~i~I~~cg~l~  206 (207)
                      ++|+|.++-+.+
T Consensus       153 ~~v~I~~v~I~e  164 (164)
T d1lopa_         153 EDVIIESVTVSE  164 (164)
T ss_dssp             SCCEEEEEEECC
T ss_pred             CCeEEEEEEEeC
Confidence            999999987653

>d1zx8a1 b.62.1.3 (A:1-124) Hypothetical protein TM1367 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: TM1367-like
domain: Hypothetical protein TM1367
species: Thermotoga maritima [TaxId: 2336]

Probab=85.59  E-value=1.6  Score=29.92  Aligned_cols=45  Identities=20%  Similarity=0.260  Sum_probs=32.6

Q ss_pred             CCcEEEeeecCCCCCCceEEEecCCCCCCC------CCccEEEEEEeCHHHHHHHH
Q 028574          135 GPGLLSMANAGPDTNGSQFFITTVTTSWLD------GRHVVFGKVLSGMDVVYKVE  184 (207)
Q Consensus       135 ~~G~v~~~~~~~~~~~sqF~I~l~~~~~ld------~~~~vfG~Vi~G~~vld~I~  184 (207)
                      ..|-++.-..+.+     +.|-.++.|.-+      ....++||+.++++.|..+.
T Consensus        62 ~~GDiaYw~pg~~-----iaifyg~tp~S~~~irlas~~n~iGki~~~~~~l~~i~  112 (124)
T d1zx8a1          62 EIGDVGYWPPGKA-----LCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIK  112 (124)
T ss_dssp             CTTEEEEEGGGTE-----EEEESSCCTTCSSSBCCSSCEEEEEEEEECGGGGGGCC
T ss_pred             ccccEEEECCCCE-----EEEEECCccCCCCcccccCcceEeEEecCCHHHHhcCC
Confidence            4788887765544     888888776544      34679999999987766654