Citrus Sinensis ID: 028614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccEEccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEcHHHHHHHHHHHcccccHHHHHHcHHHHHHHHccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccEEcccccccccEEccccccEcccEcccccEEEEEccccEEEEEEEEEEEEEEEEEEcHHHHHHHHcHHHccccHHHHHccHHHHHHHHHcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccHHHHcc
Coil and Loop (DISEMBL)
mvslrfpfsfsqpsnlphtatrsFSVAVTAAAAAATASVAGIAVyhnqkhplvqNALNclfsnqssshfwaslsfadnssatvvesktgtsfpsvlggsrkllgiglrkksvlglknidvyafgvyadhdDVKKILSEKYGNMSVAELKENKlnedlmeaDVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLqkfggsdnkellqk
Flexible Loop (DISEMBL)
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESktgtsfpsvlggsrklLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESvgsrlqkfggsdnkellqk
Low Complexity Region (SEG)
MVSLRFPFSFSQPSNLPHtatrsfsvavtaaaaaatasvagiavYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK
Disordered region (IsUnstruct)
**********************SFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADN***TVV*****TSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVR*************************
Disordered Region (DISOPRED)
**SLRF********************AVTAAAAAATASVAG*****N***PLVQNALNCLFSNQSSSHFWAS***********VESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKI*****************LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGS****************
Disordered Region (DISEMBL)
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK
Disordered Region (DISPRO)
***LRFPFSFSQPSN***TATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
255559428	293	conserved hypothetical protein [Ricinus	0.995	0.699	0.623	2e-63
449458494	285	PREDICTED: uncharacterized protein LOC10	0.995	0.719	0.633	3e-63
296085199	332	unnamed protein product [Vitis vinifera]	0.975	0.605	0.665	6e-63
225437020	280	PREDICTED: uncharacterized protein LOC10	0.975	0.717	0.665	8e-63
224062494	296	predicted protein [Populus trichocarpa]	0.990	0.689	0.604	2e-60
147794001	293	hypothetical protein VITISV_001830 [Viti	0.975	0.686	0.626	3e-60
356572192	275	PREDICTED: uncharacterized protein LOC10	0.946	0.709	0.630	8e-59
297817656	279	hypothetical protein ARALYDRAFT_486819 [	0.961	0.709	0.576	7e-58
388522673	255	unknown [Medicago truncatula]	0.985	0.796	0.614	9e-58
18412649	279	Chalcone-flavanone isomerase family prot	0.946	0.698	0.568	2e-55

>gi|255559428|ref|XP_002520734.1| conserved hypothetical protein [Ricinus communis] gi|223540119|gb|EEF41696.1| conserved hypothetical protein [Ricinus communis]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/218 (62%), Positives = 160/218 (73%), Gaps = 13/218 (5%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRS-FSVAVTAAAAAATASVAGIAV---------YHNQKH 50
           MVSLRFPF FSQP   P+ AT   FS   T  A A  A  A  A          ++N++ 
Sbjct: 1   MVSLRFPFLFSQPRKQPNHATSGHFSATRTVVACAVAAGAATFAGIAATHNSYNFNNKER 60

Query: 51  PLVQNALNCLFSNQSSSHFWASLSFADNS-SATVVESKTGTSFPSVLGGSRKLLGIGLRK 109
           P  QN LN LF+N +S   W SLS AD S + TVVESKTG SFPSV+  +R+LLG+GLR+
Sbjct: 61  PFTQNVLNLLFANINSLP-WGSLSLADASPTTTVVESKTGVSFPSVVYETRRLLGVGLRR 119

Query: 110 KSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRL 168
           KSVLGLKNI+VYAFGVYAD D VKK+L EKYG +S++ELK+NK   +D ME D+C TVRL
Sbjct: 120 KSVLGLKNINVYAFGVYADDDQVKKVLGEKYGKISISELKQNKGFKDDYMEGDICTTVRL 179

Query: 169 QIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           QI+Y+KLSIRSVRSAFEESVGSRLQKFGG DNKELLQ+
Sbjct: 180 QIVYSKLSIRSVRSAFEESVGSRLQKFGGPDNKELLQR 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458494|ref|XP_004146982.1| PREDICTED: uncharacterized protein LOC101204632 [Cucumis sativus] gi|449529142|ref|XP_004171560.1| PREDICTED: uncharacterized LOC101204632 [Cucumis sativus]

 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 133/210 (63%), Positives = 162/210 (77%), Gaps = 5/210 (2%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHN---QKHPLVQNAL 57
           MVSLRFPFSF QP   P       S A   AA  A A+V  +A   N    + P ++ AL
Sbjct: 1   MVSLRFPFSFPQPPKPPRRTFLRPSYAAAVAAGGAAAAVGFVAAARNSTNPQTPFLECAL 60

Query: 58  NCLFSNQSSSHFWASLSFADNSSAT-VVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLK 116
           N LFS+ SS   WASLS A+NS+A+ VV+SKTG SFPSV+G S++LLGIGLR+K++LGLK
Sbjct: 61  NLLFSSHSSP-LWASLSLAENSAASSVVDSKTGFSFPSVIGDSQQLLGIGLRRKAILGLK 119

Query: 117 NIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLS 176
           NI+VYAFGVYAD+DD+K+ LSEKYG ++V EL+E   ++D+ME D+CMTVRLQI+Y KLS
Sbjct: 120 NINVYAFGVYADNDDIKESLSEKYGKLTVTELQEKDFDKDVMECDICMTVRLQIVYGKLS 179

Query: 177 IRSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           IRSVRSAFEESVG+RLQKFGGSDNKELL K
Sbjct: 180 IRSVRSAFEESVGNRLQKFGGSDNKELLDK 209

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085199|emb|CBI28694.3| unnamed protein product [Vitis vinifera]

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 162/209 (77%), Gaps = 8/209 (3%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVY---HNQKHPLVQNAL 57
           MVSLRFPFSFSQP N  H ++ SFS A TA + AA +  A  A      N  +P +QNA 
Sbjct: 53  MVSLRFPFSFSQPPNPRHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPINPFLQNAF 112

Query: 58  NCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           N  FSN SS  FWASLS ADN S+ V ESKTG  FPS+L  SR+LLG GLRKKSVLGLKN
Sbjct: 113 N-FFSNHSSP-FWASLSIADNPSS-VSESKTGVLFPSILNDSRQLLGTGLRKKSVLGLKN 169

Query: 118 IDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSI 177
           IDVYAFGVYAD  D+K++LSEKYG +S +E K+  L++DLMEAD+CMTVRLQI+Y++LSI
Sbjct: 170 IDVYAFGVYADDGDLKRLLSEKYGKLSFSERKD--LSKDLMEADICMTVRLQIVYSRLSI 227

Query: 178 RSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           RSVR+AFEESVGSRLQK GGSDNKELL +
Sbjct: 228 RSVRNAFEESVGSRLQKLGGSDNKELLHR 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437020|ref|XP_002278163.1| PREDICTED: uncharacterized protein LOC100257991 [Vitis vinifera]

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 139/209 (66%), Positives = 162/209 (77%), Gaps = 8/209 (3%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVY---HNQKHPLVQNAL 57
           MVSLRFPFSFSQP N  H ++ SFS A TA + AA +  A  A      N  +P +QNA 
Sbjct: 1   MVSLRFPFSFSQPPNPRHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPINPFLQNAF 60

Query: 58  NCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           N  FSN SS  FWASLS ADN S +V ESKTG  FPS+L  SR+LLG GLRKKSVLGLKN
Sbjct: 61  N-FFSNHSSP-FWASLSIADNPS-SVSESKTGVLFPSILNDSRQLLGTGLRKKSVLGLKN 117

Query: 118 IDVYAFGVYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSI 177
           IDVYAFGVYAD  D+K++LSEKYG +S +E K+  L++DLMEAD+CMTVRLQI+Y++LSI
Sbjct: 118 IDVYAFGVYADDGDLKRLLSEKYGKLSFSERKD--LSKDLMEADICMTVRLQIVYSRLSI 175

Query: 178 RSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           RSVR+AFEESVGSRLQK GGSDNKELL +
Sbjct: 176 RSVRNAFEESVGSRLQKLGGSDNKELLHR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062494|ref|XP_002300842.1| predicted protein [Populus trichocarpa] gi|222842568|gb|EEE80115.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 157/220 (71%), Gaps = 16/220 (7%)

Query: 1   MVSLRFPFSFSQPSNLPH-----TATRSFSVAVTAAAAAATASVAGIAVYH--------N 47
           MVSLRFPF FSQP   P+       +RSF    T  A A  A  A  A            
Sbjct: 1   MVSLRFPFLFSQPKKHPNGISRTITSRSFPATTTTVACALAAGAAAFAGIAATRNSKNPK 60

Query: 48  QKHPLVQNALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGL 107
           Q +P +QNALN LFSN   +  WASLS AD  S +VVE+KTG +FPSV+  SR+LLGIGL
Sbjct: 61  QDNPFIQNALNLLFSNHLLAP-WASLSLAD-PSPSVVETKTGAAFPSVIFESRRLLGIGL 118

Query: 108 RKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTV 166
           RKK++LGLKNIDVYAFGVYAD D+V+K+LSEKYG +SV+ELKE+K   ED M  D+ MTV
Sbjct: 119 RKKTILGLKNIDVYAFGVYADADEVRKVLSEKYGKLSVSELKESKEFKEDFMGGDIGMTV 178

Query: 167 RLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           RLQI+Y+KLSIRSVRSAFEESVGSRLQ FG  ++KELLQ+
Sbjct: 179 RLQIVYSKLSIRSVRSAFEESVGSRLQNFGEPNSKELLQR 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794001|emb|CAN73325.1| hypothetical protein VITISV_001830 [Vitis vinifera]

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 139/222 (62%), Positives = 162/222 (72%), Gaps = 21/222 (9%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVY---HNQKHPLVQNAL 57
           MVSLRFPFSFSQP N  H ++ SFS A TA + AA +  A  A      N  +P +QNA 
Sbjct: 1   MVSLRFPFSFSQPPNPRHRSSNSFSAAATAFSVAAASGAAVAAAVAVSQNPINPFLQNAF 60

Query: 58  NCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           N  FSN SS  FWASLS ADN S +V ESKTG  FPS+L  SR+LLG GLRKKSVLGLKN
Sbjct: 61  N-FFSNHSSP-FWASLSIADNPS-SVSESKTGVXFPSILNDSRQLLGTGLRKKSVLGLKN 117

Query: 118 IDVYAFG-------------VYADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCM 164
           IDVYAFG             VYAD  D+K++LSEKYG +S +E K+  L++DLMEAD+CM
Sbjct: 118 IDVYAFGTAFLYYHLKSXQCVYADDGDLKRLLSEKYGKLSFSERKD--LSKDLMEADICM 175

Query: 165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           TVRLQI+Y++LSIRSVR+AFEESVGSRLQK GGSDNKELL +
Sbjct: 176 TVRLQIVYSRLSIRSVRNAFEESVGSRLQKLGGSDNKELLHR 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572192|ref|XP_003554254.1| PREDICTED: uncharacterized protein LOC100785266 [Glycine max]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 149/203 (73%), Gaps = 8/203 (3%)

Query: 4   LRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSN 63
           LRFPFSF QP   P      F    TA AAA   + A +    +     ++NALN  FS+
Sbjct: 5   LRFPFSFPQPRR-PQ-----FPRPFTAFAAAVAGASAAVVAVSSSDRSFLRNALNSFFSS 58

Query: 64  QSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAF 123
             S   W SLS AD S  +VVESKTGTSFPSVL  S+KL GIGLRKKS+LGLKNIDVYAF
Sbjct: 59  DLSMPLWGSLSLAD-SGVSVVESKTGTSFPSVLDSSQKLCGIGLRKKSILGLKNIDVYAF 117

Query: 124 GVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRS 182
           GVYAD +D+K+ LSEKYG +S +EL+ +K   EDLME+D+ MT+RLQI+Y +LSIRSVRS
Sbjct: 118 GVYADDEDIKRHLSEKYGKLSASELQGSKEFTEDLMESDISMTIRLQIVYGRLSIRSVRS 177

Query: 183 AFEESVGSRLQKFGGSDNKELLQ 205
           AFEESVGSRLQKFGGSDNKELLQ
Sbjct: 178 AFEESVGSRLQKFGGSDNKELLQ 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817656|ref|XP_002876711.1| hypothetical protein ARALYDRAFT_486819 [Arabidopsis lyrata subsp. lyrata] gi|297322549|gb|EFH52970.1| hypothetical protein ARALYDRAFT_486819 [Arabidopsis lyrata subsp. lyrata]

 Score =  229 bits (583), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 120/208 (57%), Positives = 155/208 (74%), Gaps = 10/208 (4%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFS-VAVTAAAAAATASV-AGIAVYHNQKHPLVQNALN 58
           MVS RFPFSFSQP      AT SFS  +++A A + T    A IA   N  HP+V+ AL+
Sbjct: 1   MVSFRFPFSFSQPPR----ATSSFSGFSISAVAVSVTVGAGAAIAASRNPNHPIVEWALS 56

Query: 59  CLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNI 118
              S++SS   W S++ AD++  +VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNI
Sbjct: 57  ---SHRSSLLPWGSITLADSTPESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNI 113

Query: 119 DVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSI 177
           DVYAFGVYAD  DVKK++ +KY ++  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+I
Sbjct: 114 DVYAFGVYADCHDVKKLVGDKYADLPASEIRGNKAFMDDLMEADIKMTIRLQIVYGKLNI 173

Query: 178 RSVRSAFEESVGSRLQKFGGSDNKELLQ 205
           RSVR+AF+ESVG+RL KFGG DN ELLQ
Sbjct: 174 RSVRNAFQESVGNRLNKFGGPDNDELLQ 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522673|gb|AFK49398.1| unknown [Medicago truncatula]

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/210 (61%), Positives = 157/210 (74%), Gaps = 7/210 (3%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCL 60
           MVS RFPF+FS P   P  + R FS    AAAAAATA      + +++    +QNALN  
Sbjct: 1   MVSPRFPFTFSNPK--PPQSRRPFSKFKFAAAAAATAGATAAFIANDRHRLFLQNALNSF 58

Query: 61  FSN---QSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKN 117
           F++    +SS  W SLS AD S   +V+S+TG+SFPSVL  S+KL GIGLR K +LGLKN
Sbjct: 59  FTSTFSNNSSPLWGSLSLAD-SGVPIVDSRTGSSFPSVLEASQKLCGIGLRTKRILGLKN 117

Query: 118 IDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLS 176
           IDVYAFGVYAD DDVK+ LSEKYG  S +ELK NK  NEDL+E D+ +TVRLQI+Y++LS
Sbjct: 118 IDVYAFGVYADDDDVKRCLSEKYGKFSPSELKGNKEFNEDLLENDIHLTVRLQIVYSRLS 177

Query: 177 IRSVRSAFEESVGSRLQKFGGSDNKELLQK 206
           IRSVRSAFE+SVGSRLQK+GGSDNK+LLQ+
Sbjct: 178 IRSVRSAFEDSVGSRLQKYGGSDNKQLLQR 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412649|ref|NP_567140.1| Chalcone-flavanone isomerase family protein [Arabidopsis thaliana] gi|7523399|emb|CAB86418.1| hypothetical protein [Arabidopsis thaliana] gi|17473780|gb|AAL38325.1| unknown protein [Arabidopsis thaliana] gi|20148595|gb|AAM10188.1| unknown protein [Arabidopsis thaliana] gi|21593803|gb|AAM65770.1| unknown [Arabidopsis thaliana] gi|332646922|gb|AEE80443.1| Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/211 (56%), Positives = 153/211 (72%), Gaps = 16/211 (7%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFS-VAVTAAAAAATASVAGIAVY----HNQKHPLVQN 55
           MVS RFPFSFSQP      AT SFS  +++A A + T   A          N  HP+++ 
Sbjct: 1   MVSFRFPFSFSQPPR----ATTSFSGFSISAVAVSVTVGAAAAGAAIAASRNPSHPILEW 56

Query: 56  ALNCLFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGL 115
           A +   S++SS   W S++ AD S   VVE KTG SFP+ +G SR+LLG+GLRKKS+LGL
Sbjct: 57  AFS---SHRSSLSPWGSITLADES---VVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGL 110

Query: 116 KNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNK 174
           KNIDVYAFGVYAD DDVKK++ +KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y K
Sbjct: 111 KNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGK 170

Query: 175 LSIRSVRSAFEESVGSRLQKFGGSDNKELLQ 205
           L+IRSVR+AF+ESVG+RL+KFGGSDN ELLQ
Sbjct: 171 LNIRSVRNAFQESVGNRLKKFGGSDNDELLQ 201

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2077229	279	FAP1 "fatty-acid-binding prote	0.966	0.713	0.536	1.7e-50
TAIR|locus:2057751	398	FAP2 "fatty-acid-binding prote	0.606	0.314	0.353	1e-13
DICTYBASE|DDB_G0276631	315	DDB_G0276631 "Uncharacterized	0.495	0.323	0.281	2.6e-06

TAIR|locus:2077229 FAP1 "fatty-acid-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 111/207 (53%), Positives = 140/207 (67%)

Query:     1 MVSLRFPFSFSQPSNLPHXXXXXXXXXXXXXXXXXXXXXXXX-XXYHNQKHPLVQNALNC 59
             MVS RFPFSFSQP                                  N  HP+++ A + 
Sbjct:     1 MVSFRFPFSFSQPPRATTSFSGFSISAVAVSVTVGAAAAGAAIAASRNPSHPILEWAFS- 59

Query:    60 LFSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNID 119
               S++SS   W S++ AD S   VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNID
Sbjct:    60 --SHRSSLSPWGSITLADES---VVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNID 114

Query:   120 VYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIR 178
             VYAFGVYAD DDVKK++ +KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+IR
Sbjct:   115 VYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIR 174

Query:   179 SVRSAFEESVGSRLQKFGGSDNKELLQ 205
             SVR+AF+ESVG+RL+KFGGSDN ELLQ
Sbjct:   175 SVRNAFQESVGNRLKKFGGSDNDELLQ 201

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005504 "fatty acid binding" evidence=IPI

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2057751 FAP2 "fatty-acid-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 47/133 (35%), Positives = 74/133 (55%)

Query:    70 WASLSFAD-NSSATVVESKTGTSFPSVL------GGSRKLLGIGLRKKSVLGLKNIDVYA 122
             ++ LSF   + +   VE +TG  FP +L        S  L+  G R   ++ +K++ VYA
Sbjct:   177 YSGLSFQKLDWTRQSVEPRTGIEFPMLLKENASRSNSEVLVATGSRTMKIIRIKSLKVYA 236

Query:   123 FGVYADHDDVKKILSEKYGNMSVAEL-KENKLNEDLMEADVCMTVRLQIIYNKLSIRSVR 181
             FG Y     V + L  KY ++  ++L K + L +DL+  D+ M+VRL + YN L I +VR
Sbjct:   237 FGFYVHPSSVCQKLGRKYASVPASKLDKCDDLYKDLLREDIVMSVRLVVNYNGLKINTVR 296

Query:   182 SAFEESVGSRLQK 194
               FE+S+ +RL K
Sbjct:   297 DVFEKSLRARLVK 309

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=IEA

GO:0005504 "fatty acid binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

DICTYBASE|DDB_G0276631 DDB_G0276631 "Uncharacterized protein YHR198C" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 31/110 (28%), Positives = 59/110 (53%)

Query:    83 VVESKTGTSFPSVLGGSR--KLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKY 140
             + + KTG  FP +L       L+ IG RK S +   N++VY+ G Y + D+ K  L+E Y
Sbjct:    95 ITQIKTGFKFPKILSTEYPFNLVNIGSRKLSFI---NMNVYSIGFYINKDNAKNKLNEHY 151

Query:   141 GNMSVAELKENKLN--EDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESV 188
              N S  +   NK+   +D+++  + +T++++    K++   +   F+ S+
Sbjct:   152 SNQSKEDFCMNKVEIAQDILDKGIGVTIKIRPT-RKVNWGHIYGGFQRSL 200


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       180   0.00092  109 3  11 22  0.44    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.43u 0.10s 17.53t   Elapsed:  00:00:01
  Total cpu time:  17.43u 0.10s 17.53t   Elapsed:  00:00:01
  Start:  Sat May 11 04:16:39 2013   End:  Sat May 11 04:16:40 2013

GO:0016872 "intramolecular lyase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023722001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (331 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
PLN03174	278	PLN03174, PLN03174, Chalcone-flavanone isomerase-r	1e-102
PLN03175	415	PLN03175, PLN03175, hypothetical protein; Provisio	9e-26
pfam02431	200	pfam02431, Chalcone, Chalcone-flavanone isomerase	8e-22

>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related; Provisional

 Score =  296 bits (759), Expect = e-102
 Identities = 143/207 (69%), Positives = 162/207 (78%), Gaps = 6/207 (2%)

Query: 1   MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCL 60
           MVSLRFPFSFSQP   P     + + AV AAAAAA A+ A IA   N  HP +QNALN  
Sbjct: 1   MVSLRFPFSFSQPPRAPSFF--AAAAAVAAAAAAAAAAAAAIAASRNPPHPFLQNALN-- 56

Query: 61  FSNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDV 120
             + SSS  WAS+S AD S  +VVESKTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDV
Sbjct: 57  -FHNSSSPPWASISLADPSPPSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDV 115

Query: 121 YAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRS 179
           YAFGVYAD DD+KK+L EKYG +S +ELK NK   +DLMEAD+ MTVRLQI+Y KLSIRS
Sbjct: 116 YAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLMEADIKMTVRLQIVYGKLSIRS 175

Query: 180 VRSAFEESVGSRLQKFGGSDNKELLQK 206
           VRSAFEESVGSRLQKFGGSDNKELLQ 
Sbjct: 176 VRSAFEESVGSRLQKFGGSDNKELLQS 202

Length = 278

>gnl|CDD|178719 PLN03175, PLN03175, hypothetical protein; Provisional

 Score =  102 bits (256), Expect = 9e-26
 Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 8/132 (6%)

Query: 71  ASLSFAD-NSSATVVESKTGTSFPSVLG------GSRKLLGIGLRKKSVLGLKNIDVYAF 123
           + LSF D N +   VE +TG  FP +L        S  L+G G R   ++ +K++ VYAF
Sbjct: 195 SGLSFPDLNWTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAF 254

Query: 124 GVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRS 182
           G Y   + V + L  KY ++  +ELK+     EDL+  D+ MTVRL + YN L I +VR 
Sbjct: 255 GFYVHPNSVCEKLGPKYASVPASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRD 314

Query: 183 AFEESVGSRLQK 194
           AFE+S+ +RLQK
Sbjct: 315 AFEKSLRNRLQK 326

Length = 415

>gnl|CDD|217029 pfam02431, Chalcone, Chalcone-flavanone isomerase

 Score = 88.0 bits (219), Expect = 8e-22
 Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 9/117 (7%)

Query: 92  FPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVA 146
           FP  +       S  LLG G+R  S LG K I VYA GVY    DV  + S+  G  S  
Sbjct: 1   FPPTISPPGSPKSLFLLGAGVRGVSFLG-KFIKVYAIGVYLAKSDVPSLASKWKGK-SAE 58

Query: 147 ELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKE 202
           EL+E++    DL++  +   +R+  I N L  + +R  F ES+ +RL+K G  +++E
Sbjct: 59  ELEESEDFFRDLLDGGIEKFIRIVPIRN-LDGKHLRDGFVESLVARLKKAGTYEDEE 114

Chalcone-flavanone isomerase is a plant enzyme responsible for the isomerisation of chalcone to naringenin, a key step in the biosynthesis of flavonoids. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PLN03174	278	Chalcone-flavanone isomerase-related; Provisional	100.0
PLN03175	415	hypothetical protein; Provisional	100.0
PLN02804	206	chalcone isomerase	99.96
PLN02311	271	chalcone isomerase	99.96
PLN02559	230	chalcone--flavonone isomerase	99.92
PF02431	199	Chalcone: Chalcone-flavanone isomerase; InterPro:	99.92

>PLN03174 Chalcone-flavanone isomerase-related; Provisional

Probab=100.00  E-value=1.3e-64  Score=449.38  Aligned_cols=200  Identities=72%  Similarity=1.021  Sum_probs=189.0

Q ss_pred             CccccccccCCCCCCCCCCCCchhHHHHHHHHHHhhhhhhhhhhhccCCChhhHhhhhhccCCCCCccccceeeeccCCC
Q 028614            1 MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSS   80 (206)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsla~~~~   80 (206)
                      ||||||||+|+||+  |+++...+++++++++++++|+.|+|++++++.||++|||||  |+||++| +||+|||||+++
T Consensus         1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~a~~~~   75 (278)
T PLN03174          1 MVSLRFPFSFSQPP--RAPSFFAAAAAVAAAAAAAAAAAAAIAASRNPPHPFLQNALN--FHNSSSP-PWASISLADPSP   75 (278)
T ss_pred             CcceecccccCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhcc--cCCCCCc-ccccceeccCCC
Confidence            99999999999999  888776666666666666666779999999999999999999  9999999 999999999999


Q ss_pred             CceeecCCCcccCccccCCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhh
Q 028614           81 ATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLME  159 (206)
Q Consensus        81 ~~vvEPkTGIsFP~~L~~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~  159 (206)
                      +++|||+|||+||.+++.+.+|+|+|+|+|+|+|+|+|||||+|+|+|+++++++|++||+|++.+||++++ ||++|++
T Consensus        76 ~~~vEp~tGv~FP~~l~~~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f~~dil~  155 (278)
T PLN03174         76 PSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLME  155 (278)
T ss_pred             CceeccCCCCcCCCcccCCCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHHHHHHHc
Confidence            999999999999999998888999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             cCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCchhhhc
Q 028614          160 ADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ  205 (206)
Q Consensus       160 ~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~el~q  205 (206)
                      +|++|++||+|+|++++++++|+||+|++++||+++++.+++|+++
T Consensus       156 ~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~Ie  201 (278)
T PLN03174        156 ADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ  201 (278)
T ss_pred             CCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHH
Confidence            9999999999999999999999999999999999999999998875

>PLN03175 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-35  Score=273.26  Aligned_cols=134  Identities=41%  Similarity=0.668  Sum_probs=122.3

Q ss_pred             eeeecc-CCCCceeecCCCcccCcccc------CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCC
Q 028614           72 SLSFAD-NSSATVVESKTGTSFPSVLG------GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMS  144 (206)
Q Consensus        72 ~lsla~-~~~~~vvEPkTGIsFP~~L~------~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p  144 (206)
                      ++|+.+ +-..++|||+|||+||.+++      .+..|+|+|+|+|+|+++|+|||||||+|+|+++++.+|++||+|++
T Consensus       196 ~~~~~~~~~~~~~vEPkTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKs  275 (415)
T PLN03175        196 GLSFPDLNWTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVP  275 (415)
T ss_pred             ccCcCcccccccccccCCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCc
Confidence            556655 55778999999999999996      23569999999999999999999999999999988999999999999


Q ss_pred             hhhhhhch-HHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCchhhhc
Q 028614          145 VAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ  205 (206)
Q Consensus       145 ~~EL~~~~-f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~el~q  205 (206)
                      ++||.+++ ||+|++++|++|+||||+++++++++++++||+|++++||+++++.++.|.++
T Consensus       276 a~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~gdae~eAIe  337 (415)
T PLN03175        276 ASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMNPNTDYNCLK  337 (415)
T ss_pred             HHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence            99999999 99999999999999999999899999999999999999999998866666554

>PLN02804 chalcone isomerase

Probab=99.96  E-value=1.1e-29  Score=218.19  Aligned_cols=114  Identities=27%  Similarity=0.375  Sum_probs=104.7

Q ss_pred             CCcccCccccCC---ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhcCcc
Q 028614           88 TGTSFPSVLGGS---RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVC  163 (206)
Q Consensus        88 TGIsFP~~L~~~---~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~dv~  163 (206)
                      .|++||..++.+   ..|+|+|+|.|+|+|+ +|||||||+|+|+ +++.+|+ ||+|+|++||.+|+ ||+||+++|++
T Consensus         7 ~~v~FP~~i~~ss~~l~L~G~G~R~~~I~~~-~iK~yAiGvYle~-~~~~~L~-kwkgk~a~EL~~~~~Ff~dlv~~p~e   83 (206)
T PLN02804          7 EDIPFPPQITTSSKPLSLLGHGITDIEIHFL-QIKFTAIGVYLEP-SVKGHLQ-SWKGKPGSELAEDDDFFQALIQAPVE   83 (206)
T ss_pred             cCcCCCceeecCCCcceEEeecccceEEEeE-EEEEEEEEEEecH-HHHHHHH-HhcCCCHHHHhcCHHHHHHHHcCChh
Confidence            589999999843   4699999999999999 9999999999999 5888995 99999999999999 99999999999


Q ss_pred             eEEEEEEeecccchhhHHHHHHHHHHHHhhhcC--CCCchhhhc
Q 028614          164 MTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFG--GSDNKELLQ  205 (206)
Q Consensus       164 ~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~g--g~~~~el~q  205 (206)
                      |++||++++ ++++.+|+++|+|++++||++.|  +.++.|.|+
T Consensus        84 k~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~  126 (206)
T PLN02804         84 KLIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALE  126 (206)
T ss_pred             hEEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence            999999998 69999999999999999999998  445666665

>PLN02311 chalcone isomerase

Probab=99.96  E-value=2e-29  Score=223.92  Aligned_cols=119  Identities=22%  Similarity=0.364  Sum_probs=106.8

Q ss_pred             CCCCceeecCCCcccCcccc-----CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch
Q 028614           78 NSSATVVESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK  152 (206)
Q Consensus        78 ~~~~~vvEPkTGIsFP~~L~-----~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~  152 (206)
                      .+...++||+|||+||..++     .++.|.|+|+|+|.|+++ +|||||+|+|+|++.+ ++|+ ||+|.+++||.+++
T Consensus        63 ~~~~~~~ep~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~~-~vKVYA~GLYL~~~~~-~~L~-kwkgk~a~eL~~~~  139 (271)
T PLN02311         63 GSAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAII-GVKVYAAGLYVNPSIL-SGLS-AWKGRSADEIQRDS  139 (271)
T ss_pred             CcccceecCCcCCcCCccccCCCCCCceeEeeeEEeeEEEeee-eEEEEEEEEEechhhh-hhHh-hhcCCCHHHHhcch
Confidence            44557999999999999997     346799999999999987 9999999999999855 5688 99999999999999


Q ss_pred             -HHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCc
Q 028614          153 -LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDN  200 (206)
Q Consensus       153 -f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~  200 (206)
                       ||++|+++|.+|++||++++ ++++.+|++||+|++++|+++.++.+.
T Consensus       140 ~ff~dIi~a~~eK~irI~~iR-~v~g~~~~~A~~eg~~~rlk~~~~~~~  187 (271)
T PLN02311        140 SLFSSIFQAPAEKSLQIVLVR-DVDGKTFWDALDEAISPRIKAPSPDDT  187 (271)
T ss_pred             HHHHHHhcCCcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHhccccchH
Confidence             99999999999999999987 699999999999999999977654333

>PLN02559 chalcone--flavonone isomerase

Probab=99.92  E-value=7e-25  Score=191.17  Aligned_cols=108  Identities=23%  Similarity=0.332  Sum_probs=99.3

Q ss_pred             CCcccCcccc-----CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhcC
Q 028614           88 TGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEAD  161 (206)
Q Consensus        88 TGIsFP~~L~-----~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~d  161 (206)
                      .||+||..++     ....|+|+|+|.|+|+|. +||+||||+|+|++++ ..|.+||+|++++||.++. ||+||+.+|
T Consensus        10 e~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~-~vKftAiGvYle~~av-~~L~~KWKGKsa~EL~~~~~Ff~div~~p   87 (230)
T PLN02559         10 EGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGK-FIKFTAIGVYLEGNAV-PSLAKKWKGKTAEELADSVAFFRDVVTGD   87 (230)
T ss_pred             cceecCCcccCCCCCCceEEEeccccceEEeeE-EEEEEEEEEEechhHH-HHHHHhhCCcCHHHHhcCHHHHHHHHcCc
Confidence            5899999997     235699999999999985 9999999999999977 5677899999999999999 999999999


Q ss_pred             cceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCC
Q 028614          162 VCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS  198 (206)
Q Consensus       162 v~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~  198 (206)
                      +||.+|+++++ .+++.+|++++++...+|++-.|--
T Consensus        88 ~EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y  123 (230)
T PLN02559         88 FEKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIY  123 (230)
T ss_pred             chhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCc
Confidence            99999999999 5999999999999999999988644

>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5

Probab=99.92  E-value=4.5e-25  Score=184.17  Aligned_cols=101  Identities=37%  Similarity=0.621  Sum_probs=87.6

Q ss_pred             cCcccc-----CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChh-hhhhch-HHHHHhhcCcce
Q 028614           92 FPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVA-ELKENK-LNEDLMEADVCM  164 (206)
Q Consensus        92 FP~~L~-----~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~-EL~~~~-f~edLl~~dv~~  164 (206)
                      ||.+|+     ++.+|+|+|+|+|+|+   +|||||+|+|+|+++++++++ +|.+...+ ++++++ ||++|++++++|
T Consensus         1 FP~~i~~p~~~~~l~L~G~GvR~~~~~---~ikVYavG~Yv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~k   76 (199)
T PF02431_consen    1 FPKKITSPTSSEELSLLGAGVRTVSFL---NIKVYAVGLYVDDSDAKKLLK-KWKGKSASDDLEKSEDFFDDLLDSPVEK   76 (199)
T ss_dssp             EESEEE-TTTSSEEEEEEEEEEEEEET---EEEEEEEEEEEECCHHHHHHH-HHTTT-HHHHHHT-HHHHHHHHHSSS-E
T ss_pred             CCCcccCCCCCCCeEEEEEEEeeEEEE---EEEEEEEEEEEChhHhhhHHH-hhhcccCcccccccHHHHHHHhcCCccE
Confidence            677766     4478999999999998   568999999999999998776 67777776 899989 999999999999


Q ss_pred             EEEEEEeecccchhhHHHHHHHHHHHHhhhcCC
Q 028614          165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG  197 (206)
Q Consensus       165 tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg  197 (206)
                      ++||+++|+ ++++|++|+|+|+|.+|+++.+.
T Consensus        77 ~iri~~~R~-~~~~~l~d~~~~~i~~r~~~~~~  108 (199)
T PF02431_consen   77 AIRIVPVRN-VDGKHLRDAFIESIRPRLKAAGT  108 (199)
T ss_dssp             EEEEEESSS-EEHHHHHHHHHHHHHHHHHHTT-
T ss_pred             EEEEEEEec-CCHHHHHHHHHHHHHHHHhhccc
Confidence            999999995 99999999999999999999864

5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
4doo_A	205	Crystal Structure Of Arabidopsis Thaliana Fatty-Aci		2e-46

>pdb|4DOO|A Chain A, Crystal Structure Of Arabidopsis Thaliana Fatty-Acid Binding Protein At3g63170 (Atfap1) Length = 205

Iteration: 1
 Score =  181 bits (459), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/128 (67%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Query: 79  SSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSE 138
           +  +VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDVYAFGVYAD DDVKK++ +
Sbjct: 1   ADESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGD 60
Query: 139 KYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG 197
           KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+IRSVR+AF+ESVG+RL+KFGG
Sbjct: 61  KYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGG 120
Query: 198 SDNKELLQ 205
           SDN ELLQ
Sbjct: 121 SDNDELLQ 128
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	3e-32
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	9e-22
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	3e-20
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	5e-19
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	1e-16

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana} Length = 205

 Score =  114 bits (287), Expect = 3e-32
 Identities = 87/129 (67%), Positives = 110/129 (85%), Gaps = 1/129 (0%)

Query: 79  SSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSE 138
           +  +VVE KTG SFP+ +G SR+LLG+GLRKKS+LGLKNIDVYAFGVYAD DDVKK++ +
Sbjct: 1   ADESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGD 60

Query: 139 KYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG 197
           KY N+  +E++ NK   +DLMEAD+ MT+RLQI+Y KL+IRSVR+AF+ESVG+RL+KFGG
Sbjct: 61  KYANLPASEIRGNKSFMDDLMEADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGG 120

Query: 198 SDNKELLQK 206
           SDN ELLQ 
Sbjct: 121 SDNDELLQS 129

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A* Length = 222

 Score = 87.9 bits (217), Expect = 9e-22
 Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 79  SSATVVESKTGTSFPSVL-----GGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVK 133
           +++    +     +P+V+     G S  L G G R  ++ G   I   A GVY +   V 
Sbjct: 2   AASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVA 60

Query: 134 KILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRL 192
             L+ K+   S  EL E      D++       +R   I   LS         E+  + L
Sbjct: 61  S-LAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRE-LSGPEYSRKVMENCVAHL 118

Query: 193 QKFGGSDNKE 202
           +  G   + E
Sbjct: 119 KSVGTYGDAE 128

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana} Length = 208

 Score = 83.6 bits (206), Expect = 3e-20
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 88  TGTSFPSVLGGSRK--LLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSV 145
               FP  +  S+   LLG G+    +     +   A GVY D  DVK    + +   + 
Sbjct: 8   HEVPFPPQIITSKPLSLLGQGITDIEIHF-LQVKFTAIGVYLDPSDVKT-HLDNWKGKTG 65

Query: 146 AELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKE 202
            EL  +    + L  A++   +R+ +I   +         E +V  RL +    + +E
Sbjct: 66  KELAGDDDFFDALASAEMEKVIRVVVIKE-IKGAQYGVQLENTVRDRLAEEDKYEEEE 122

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana} Length = 217

 Score = 80.5 bits (198), Expect = 5e-19
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 71  ASLSFADNSSATVVESKTGTSFPSVL-----GGSRKLLGIGLRKKSVLGLKNIDVYAFGV 125
           ++ S   N+     E+ T   F   +          LLG G R+K    +  + VYA G 
Sbjct: 2   SAASSVGNAEDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII-GVKVYAAGY 60

Query: 126 YADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAF 184
           Y +   +  +    +   S  E++ +  L   + +A    ++++ ++ + +  ++   A 
Sbjct: 61  YVNESILSGL--SAWTGRSADEIQRDSSLFVSIFQAQAEKSLQIVLVRD-VDGKTFWDAL 117

Query: 185 EESVGSRLQKFGGSDNKELLQ 205
           +E++  R++     D   L  
Sbjct: 118 DEAISPRIKSPSSEDTTALST 138

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana} Length = 246

 Score = 74.8 bits (183), Expect = 1e-16
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 65  SSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRK--LLGIGLRKKSVLGLKNIDVYA 122
           SSS+  AS S     +   V+S T          S    L G G+R   + G K +    
Sbjct: 2   SSSNACASPSPFPAVTKLHVDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQG-KFVIFTV 60

Query: 123 FGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVR 181
            GVY + + V   LS K+   +  EL E+     +++       +++ +    L+ +   
Sbjct: 61  IGVYLEGNAVPS-LSVKWKGKTTEELTESIPFFREIVTGAFEKFIKVTMKLP-LTGQQYS 118

Query: 182 SAFEESVGSRLQKFG--GSDNKELLQK 206
               E+  +  ++ G       + ++K
Sbjct: 119 EKVTENCVAIWKQLGLYTDCEAKAVEK 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4doo_A	205	Chalcone-flavanone isomerase family protein; chalc	100.0
4dok_A	208	Similarity to chalcone-flavonone isomerase; chalco	99.95
4dol_A	217	AT1G53520, 94270-95700, chalcon; chalcone-isomeras	99.95
4doi_A	246	Chalcone--flavonone isomerase 1; chalcone-flavanon	99.94
1eyq_A	222	Chalcone-flavonone isomerase 1; chalcone isomerase	99.94

>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-35  Score=247.31  Aligned_cols=126  Identities=69%  Similarity=1.101  Sum_probs=118.0

Q ss_pred             CCceeecCCCcccCccccCCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHh
Q 028614           80 SATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLM  158 (206)
Q Consensus        80 ~~~vvEPkTGIsFP~~L~~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl  158 (206)
                      ++.+|||+|||+||..++.+++|+|+|+|+|+|+|+|+|||||+|+|+|+++++++|++||++++++||++++ ||++|+
T Consensus         2 ~~~~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~il   81 (205)
T 4doo_A            2 DESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLM   81 (205)
T ss_dssp             -CCEECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHHH
T ss_pred             CCccccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             hcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCchhhhc
Q 028614          159 EADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ  205 (206)
Q Consensus       159 ~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~el~q  205 (206)
                      +++++|++||+++|++++.+|++++|++++++|+++.++.+..+.++
T Consensus        82 ~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~  128 (205)
T 4doo_A           82 EADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQ  128 (205)
T ss_dssp             HSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHH
T ss_pred             cCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence            99999999999998779999999999999999999998766655443

>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}

Probab=99.95  E-value=1.6e-28  Score=208.67  Aligned_cols=114  Identities=25%  Similarity=0.348  Sum_probs=104.2

Q ss_pred             CCcccCccccCC--ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhcCcce
Q 028614           88 TGTSFPSVLGGS--RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCM  164 (206)
Q Consensus        88 TGIsFP~~L~~~--~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~dv~~  164 (206)
                      .||+||..++.+  ..|+|+|+|.|+|+|+ .|||||+|+|+|+++++.+| +||++++++||.+++ ||++|+..|++|
T Consensus         8 ~gv~FP~~~~~~~~L~L~GaGvR~~~I~~~-~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~ii~~p~eK   85 (208)
T 4dok_A            8 HEVPFPPQIITSKPLSLLGQGITDIEIHFL-QVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDALASAEMEK   85 (208)
T ss_dssp             TTEEECSEEESSSEEEEEEEEEEEEEETTE-EEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHHHHHSSSCE
T ss_pred             ccEECCccccCCCcceeeeeeeeeEeeeee-EEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHHHhcCcccc
Confidence            499999999855  4599999999999998 89999999999999999999 799999999999999 999999999999


Q ss_pred             EEEEEEeecccchhhHHHHHHHHHHHHhhhcCCC--Cchhhh
Q 028614          165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELL  204 (206)
Q Consensus       165 tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~--~~~el~  204 (206)
                      ++||++++ ++++.+|+++|+|++++|+++.+.-  +++|.|
T Consensus        86 ~iri~~ir-~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL  126 (208)
T 4dok_A           86 VIRVVVIK-EIKGAQYGVQLENTVRDRLAEEDKYEEEEETEL  126 (208)
T ss_dssp             EEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             eEEEEEEe-cCCcHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence            99999998 6999999999999999999999863  344444

>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}

Probab=99.95  E-value=6e-28  Score=203.21  Aligned_cols=114  Identities=20%  Similarity=0.346  Sum_probs=104.5

Q ss_pred             CCceeecCCCcccCccccC-----CceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-H
Q 028614           80 SATVVESKTGTSFPSVLGG-----SRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-L  153 (206)
Q Consensus        80 ~~~vvEPkTGIsFP~~L~~-----~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f  153 (206)
                      ...+|||+|||+||..++.     ..+|+|+|+|+|.|.++ +||||++|+|++++.+ .+|+ ||++.+++||.+++ |
T Consensus        11 ~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~-~ikvYa~glYl~~~~~-~~L~-~~~~~~~~el~~~~~~   87 (217)
T 4dol_A           11 EDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII-GVKVYAAGYYVNESIL-SGLS-AWTGRSADEIQRDSSL   87 (217)
T ss_dssp             CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSS-EEEEEEEEEEECGGGT-GGGG-GGTTCCHHHHHTCHHH
T ss_pred             cceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeee-EEEEEEEEEEcCHHHH-HHHH-hhcCCCHHHHcccHHH
Confidence            3469999999999999983     35799999999999888 8999999999999855 5788 99999999999999 9


Q ss_pred             HHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCC
Q 028614          154 NEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG  197 (206)
Q Consensus       154 ~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg  197 (206)
                      |+++++.+++|++||+++|+ +++.+++++|+|++++|+++.+.
T Consensus        88 ~~~il~~~~~k~lri~~~R~-i~~~~l~~a~~e~i~~~~~~~~~  130 (217)
T 4dol_A           88 FVSIFQAQAEKSLQIVLVRD-VDGKTFWDALDEAISPRIKSPSS  130 (217)
T ss_dssp             HHHHHHSSSCEEEEEEESSC-BCHHHHHHHHHHHHTTTCSSCCH
T ss_pred             HHHHHcCCCceEEEEEEEec-CCHHHHHHHHHHHHHHHHHhcch
Confidence            99999999999999999985 99999999999999999988763

>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}

Probab=99.94  E-value=1.4e-27  Score=208.01  Aligned_cols=110  Identities=17%  Similarity=0.215  Sum_probs=101.8

Q ss_pred             CCCcccCccccC---C--ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhc
Q 028614           87 KTGTSFPSVLGG---S--RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEA  160 (206)
Q Consensus        87 kTGIsFP~~L~~---~--~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~  160 (206)
                      -+||+||..++.   +  +.|+|+|+|+|+|+|+ .|||||+|+|+|++ ++.+|++||+|++++||.+++ ||++|+..
T Consensus        21 V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~-~vKvYAiGlYl~~~-~~~~L~~kwkgk~~~eL~~~~~ff~~il~~   98 (246)
T 4doi_A           21 VDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGK-FVIFTVIGVYLEGN-AVPSLSVKWKGKTTEELTESIPFFREIVTG   98 (246)
T ss_dssp             ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEECTT-HHHHHHHHHTTCCHHHHHHCHHHHHHHHHC
T ss_pred             ECceECCCeeccCCCCCceeEecceeeceeeeee-EEEEEEEEEEechh-HHHHhhhhhcCCCHHHhcccHHHHHHHHcC
Confidence            469999999973   3  5699999999999998 89999999999997 778899999999999999999 99999999


Q ss_pred             CcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCC
Q 028614          161 DVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSD  199 (206)
Q Consensus       161 dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~  199 (206)
                      |++|+|||+++| ++++.+|+++|+|++++|+++.|...
T Consensus        99 p~eK~lrl~~ir-~l~g~~~~~al~e~l~~rlk~~g~~~  136 (246)
T 4doi_A           99 AFEKFIKVTMKL-PLTGQQYSEKVTENCVAIWKQLGLYT  136 (246)
T ss_dssp             SSCEEEEEEESS-CEEHHHHHHHHTTTHHHHHHHHTCCC
T ss_pred             CcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999998 69999999999999999999987653

>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*

Probab=99.94  E-value=9.8e-27  Score=198.80  Aligned_cols=109  Identities=25%  Similarity=0.255  Sum_probs=100.7

Q ss_pred             CCCcccCccccC-----CceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhc
Q 028614           87 KTGTSFPSVLGG-----SRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEA  160 (206)
Q Consensus        87 kTGIsFP~~L~~-----~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~  160 (206)
                      -|||+||..++.     ++.|+|+|+|.|.|+++ .|||||+|+|+|++ +..+|..||+|.+++||.+++ ||++|+++
T Consensus        10 v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~-~iKvYa~GlYl~~~-~~~~L~~k~kg~~a~el~~~~~f~~~li~~   87 (222)
T 1eyq_A           10 VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGN-FIKFTAIGVYLEDI-AVASLAAKWKGKSSEELLETLDFYRDIISG   87 (222)
T ss_dssp             ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEEETT-HHHHHHHHHTTCCHHHHHTCHHHHHHHHHC
T ss_pred             EcceECCCccccCCCCCceEEeeeEEEEEEeece-EEEEEEEEEEeCHH-HhhHhhhhhcCCCHHHhcccHHHHHHHHcC
Confidence            589999999972     36799999999999886 99999999999997 667899999999999999999 99999999


Q ss_pred             CcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCC
Q 028614          161 DVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS  198 (206)
Q Consensus       161 dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~  198 (206)
                      |++|++||++++ ++++.+|++||+|++++|+++.|..
T Consensus        88 ~~~k~irl~~i~-~v~g~~~~~a~~e~~~~~~~~~g~~  124 (222)
T 1eyq_A           88 PFEKLIRGSKIR-ELSGPEYSRKVMENCVAHLKSVGTY  124 (222)
T ss_dssp             SSCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCceEEEEEEEe-CCCHHHHHHHHHHHHHHHHhccCcc
Confidence            999999999998 5999999999999999999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1eyqa_	212	d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicag	4e-18

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 12/129 (9%)

Query: 80  SATVVESKTGTSFPSVL--GGSRK---LLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKK 134
           +A  VE      +P+V+    + K   L G G R  ++ G   I   A GVY +   V  
Sbjct: 3   TAITVE---NLEYPAVVTSPVTGKSYFLGGAGERGLTIEG-NFIKFTAIGVYLEDIAVAS 58

Query: 135 ILSEKYGNMSVAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQ 193
            L+ K+   S  EL E      D++       +R   I   LS         E+  + L+
Sbjct: 59  -LAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRE-LSGPEYSRKVMENCVAHLK 116

Query: 194 KFGGSDNKE 202
             G   + E
Sbjct: 117 SVGTYGDAE 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1eyqa_	212	Chalcone isomerase {Alfalfa (Medicago sativa) [Tax	99.94

>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a+b)
fold: Chalcone isomerase
superfamily: Chalcone isomerase
family: Chalcone isomerase
domain: Chalcone isomerase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.94  E-value=2.6e-27  Score=197.24  Aligned_cols=113  Identities=26%  Similarity=0.290  Sum_probs=101.9

Q ss_pred             ceeecCCCcccCccccCC-----ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHH
Q 028614           82 TVVESKTGTSFPSVLGGS-----RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNE  155 (206)
Q Consensus        82 ~vvEPkTGIsFP~~L~~~-----~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~e  155 (206)
                      +.||   ||+||..+...     .+|+|+|+|+|+|+++ +||||++|+|+|++++.. |..+|+|++.+|+.++. ||+
T Consensus         5 v~v~---~v~fP~~i~~~~~~~~l~L~G~GvR~~~i~~~-~ikvYa~GlYl~~~~~~~-l~~~~~~k~~~el~~~~~~~~   79 (212)
T d1eyqa_           5 ITVE---NLEYPAVVTSPVTGKSYFLGGAGERGLTIEGN-FIKFTAIGVYLEDIAVAS-LAAKWKGKSSEELLETLDFYR   79 (212)
T ss_dssp             EEET---TEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEEETTHHHH-HHHHHTTCCHHHHHTCHHHHH
T ss_pred             EEEC---CccCCCcccCCCCCCceEEeeeEEeeEEEeee-EEEEEEEEEEcccchhHH-HhhhhcccchhhhhccHHHHH
Confidence            3455   89999999732     5699999999999887 899999999999998864 66799999999999999 999


Q ss_pred             HHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCc
Q 028614          156 DLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDN  200 (206)
Q Consensus       156 dLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~  200 (206)
                      +|+++|++|++|||++|+ ++++|++|||+|++++||++.+...+
T Consensus        80 ~il~~~~~k~iriv~vr~-v~~~~l~dal~e~l~~r~~~~~~~~~  123 (212)
T d1eyqa_          80 DIISGPFEKLIRGSKIRE-LSGPEYSRKVMENCVAHLKSVGTYGD  123 (212)
T ss_dssp             HHHHCSSCEEEEEEESSC-EEHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             HHhcCCcceEEEEEEEec-CCHHHHHHHHHHHHHHHHhccCcccc
Confidence            999999999999999995 99999999999999999999876654