Citrus Sinensis ID: 028616

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccHHHcccccccccccccccHHHHHHHHccccccEEEEccccccHHHHHHHHHccccccEEEccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHccccHEEEEccccccccccccccHHHHHHHHHcHHHcEEEEccccccHHHHHHHHHccccccEEEcccccEEcccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccHHHHcccccccccccHcEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MSDSIVAQIAGRLSAVTFLDlsycskigAPALEAIGKHCKLLVVLCRnmhpldtadklsqdDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALlefldlrgcwdvklddkfmkgnfpnlkvlgpfvmdyyeindwddcsdysdgseYLAWEFLagemgdyddddeiyegmwddegrlEELELRFYdgieedagiygwppsp
Flexible Loop (DISEMBL)
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDtadklsqddEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMkgnfpnlkvlgpFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIeedagiygwppsp
Low Complexity Region (SEG)
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAgemgdyddddeiyegmWDDEGRleelelRFYDGIEEDAGIYGWPPSP
Disordered region (IsUnstruct)
****IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD******************PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGW****
Disordered Region (DISOPRED)
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGI*GWP***
Disordered Region (DISEMBL)
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Disordered Region (DISPRO)
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9ZPE4	317	F-box protein FBW2 OS=Ara	yes	no	0.951	0.618	0.590	3e-60
Q9M0U9	302	F-box protein SKIP19 OS=A	no	no	0.5	0.341	0.385	3e-11
Q9FDX1	300	F-box protein SKIP1 OS=Ar	no	no	0.606	0.416	0.330	1e-10
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.611	0.280	0.322	1e-09
Q9M096	301	Putative F-box/LRR-repeat	no	no	0.626	0.428	0.275	9e-07
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.529	0.443	0.309	0.0003

>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1

 Score =  231 bits (589), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 153/210 (72%), Gaps = 14/210 (6%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S 
Sbjct: 118 LTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSH 177

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 121 FPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMW 176
           FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  +E  W
Sbjct: 238 FPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FEHGW 295

Query: 177 DDEGRLEELELRFYDGIEEDAGIYGWPPSP 206
           DD    E   L        D   + WPPSP
Sbjct: 296 DDNFYAENAVL--------DMEPHIWPPSP 317

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 6/109 (5%)

Query: 19  LDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE 78
           L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L+
Sbjct: 145 LELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQ 198

Query: 79  MAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 127
           +  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct: 199 LCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 14/139 (10%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH---------- 50
           ++D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+           
Sbjct: 125 VTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSV 184

Query: 51  PLDTADKLSQD--DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108
           P +  D   QD   EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC 
Sbjct: 185 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC- 243

Query: 109 DVKLDDKFMKGNFPNLKVL 127
            V L  + +  N   LK L
Sbjct: 244 -VHLSSRDITSNVSRLKWL 261

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           ++D  VA+   ++  + +L++SYC   G  +L  IG+ C  L  L  N  P         
Sbjct: 290 ITDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGF 348

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DD A AIA +MP+L+ L++  + ++ + +  IL  C  LE LDLR C+++ L     K  
Sbjct: 349 DDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRC 408

Query: 121 FPNLKVL 127
           F  +K L
Sbjct: 409 FERIKDL 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 16/145 (11%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM----------- 49
           ++D+ + +IA     +  LD+SY   I   +L  +G+ C+ L +L RN+           
Sbjct: 137 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 196

Query: 50  -HPLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 106
             PLD      +  + EA  I   M +LK LE+ Y  ++   +  +   C+ LE++DLRG
Sbjct: 197 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 256

Query: 107 CWDVKLDDKFMKGNFPNLKVLGPFV 131
           C  +   D  +  N   LK L   +
Sbjct: 257 CISLTRSD--INTNTSGLKNLTEII 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 6   VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 65
           V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A 
Sbjct: 138 VVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVAL 193

Query: 66  AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 118
           AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct: 194 AIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
224063261	321	predicted protein [Populus trichocarpa]	0.985	0.632	0.725	4e-73
356508073	321	PREDICTED: F-box protein FBW2-like isofo	0.990	0.635	0.700	4e-69
449436998	318	PREDICTED: F-box protein FBW2-like [Cucu	0.980	0.635	0.645	3e-67
255545780	329	ubiquitin-protein ligase, putative [Rici	0.995	0.623	0.658	3e-66
225467167	317	PREDICTED: F-box protein FBW2 isoform 1	0.975	0.634	0.626	7e-64
147787397	225	hypothetical protein VITISV_035646 [Viti	0.888	0.813	0.593	2e-59
18413178	317	F-box protein FBW2 [Arabidopsis thaliana	0.951	0.618	0.590	1e-58
297813231	317	F-box family protein [Arabidopsis lyrata	0.951	0.618	0.576	1e-57
359492882	296	PREDICTED: F-box protein FBW2 [Vitis vin	0.839	0.584	0.595	5e-56
242065902	365	hypothetical protein SORBIDRAFT_04g02735	0.975	0.550	0.565	2e-54

>gi|224063261|ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|222842792|gb|EEE80339.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/208 (72%), Positives = 169/208 (81%), Gaps = 5/208 (2%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           + DSIV QIAGRLS VTFLD+SYC+KI   ALEAIGKHCKLLV LCRNMHPLDT    +Q
Sbjct: 117 IGDSIVEQIAGRLSTVTFLDVSYCNKISGRALEAIGKHCKLLVGLCRNMHPLDTEGLEAQ 176

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA AIA+TMPKLKRLEMAYH++STE +L+ILSSC  LEF+DLRGCW+V LD+KF K  
Sbjct: 177 DDEAYAIATTMPKLKRLEMAYHLVSTESLLQILSSCTNLEFMDLRGCWNVNLDNKFFKEK 236

Query: 121 FPNLKVLGPFVM-DYYEINDW-DDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDD 178
           F  L VLGP VM DYYE NDW +DCS+YSD S+YLAW FLA   G   DDDE Y+ MWDD
Sbjct: 237 FQKLTVLGPLVMEDYYEANDWEEDCSEYSDDSDYLAWGFLA-GDGGDYDDDESYDEMWDD 295

Query: 179 EGRLEELELRFYDGIEEDAGIYGWPPSP 206
           EGRLEELELRFY+G   DAG+YGWPPSP
Sbjct: 296 EGRLEELELRFYEGA--DAGLYGWPPSP 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508073|ref|XP_003522785.1| PREDICTED: F-box protein FBW2-like isoform 1 [Glycine max] gi|356508075|ref|XP_003522786.1| PREDICTED: F-box protein FBW2-like isoform 2 [Glycine max]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/207 (70%), Positives = 166/207 (80%), Gaps = 3/207 (1%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           M+DSIV QIAGRLS ++FLD+SYC KIG  ALE IGK+CKLL  LCRNMHPLDTA K  Q
Sbjct: 117 MNDSIVEQIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTASKPFQ 176

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA AIASTMPKLK LEMAYH+IST  VL+IL++C  LEFLD RGCW V LD  F+K  
Sbjct: 177 DDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQK 236

Query: 121 FPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGD-YDDDDEIYEGMWDDE 179
           FP LKVLGPFV+D YE + WDD SD SD SEYLAW+F+AG M + Y DD + Y+GMWDDE
Sbjct: 237 FPKLKVLGPFVLDTYESDGWDDFSDVSDSSEYLAWDFVAGGMEEYYVDDSDSYDGMWDDE 296

Query: 180 GRLEELELRFYDGIEEDAGIYGWPPSP 206
           GRL+EL+  FY+GI EDAG+Y WPPSP
Sbjct: 297 GRLDELQFGFYEGI-EDAGMY-WPPSP 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436998|ref|XP_004136279.1| PREDICTED: F-box protein FBW2-like [Cucumis sativus] gi|449524052|ref|XP_004169037.1| PREDICTED: F-box protein FBW2-like isoform 1 [Cucumis sativus] gi|449524054|ref|XP_004169038.1| PREDICTED: F-box protein FBW2-like isoform 2 [Cucumis sativus] gi|449524056|ref|XP_004169039.1| PREDICTED: F-box protein FBW2-like isoform 3 [Cucumis sativus]

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 156/206 (75%), Gaps = 4/206 (1%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SD++  QIAGRL AVTFLDLSYC KI A  LE+IGK+CK LV +CRN+HPL TA   S 
Sbjct: 117 ISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSP 176

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA  IA+TMPKLK LEMAYH +ST+ +L ILSSC  LEFLDLRGC DV+LDDKF+   
Sbjct: 177 DDEAYTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPDLEFLDLRGCGDVRLDDKFLAEK 236

Query: 121 FPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEG 180
           FP L+VLGP V D YE N+WD+ SDYS  SE LAW+F AG    Y DD   ++  WDDEG
Sbjct: 237 FPKLRVLGPLVRDVYERNEWDEGSDYSYISEDLAWDFSAG----YFDDAGSFDDQWDDEG 292

Query: 181 RLEELELRFYDGIEEDAGIYGWPPSP 206
           RLE LELRFY+G++ED   +GWPPSP
Sbjct: 293 RLEGLELRFYEGVDEDNEAFGWPPSP 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545780|ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547036|gb|EEF48533.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/214 (65%), Positives = 170/214 (79%), Gaps = 9/214 (4%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SDSIV QIAGRLS +TFLD+S+C++I A ALEAIGK+CKLL  LCRN+    +A++L Q
Sbjct: 117 ISDSIVEQIAGRLSTITFLDVSHCNEISARALEAIGKNCKLLSGLCRNVELSSSANQLLQ 176

Query: 61  DDEANAIASTMPKLKRLEMAYH-VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG 119
           DDEA AIASTMPKLK LE+AYH +I+TE VLKILSSC  LEFL+L GCWDVK D  F++ 
Sbjct: 177 DDEAQAIASTMPKLKHLEVAYHLLINTESVLKILSSCPELEFLNLTGCWDVKFDRNFLQE 236

Query: 120 NFPNLKVLGPFVMDYYEINDWDD-CSD----YSDGSEYLAWEFLAGEM--GDYDDDDEIY 172
            FP LKV+GP ++DYY++NDW D CS+    YSD SEY AWE  +G+M   D DDDD+ Y
Sbjct: 237 KFPKLKVVGPHLLDYYDMNDWGDYCSEYSDAYSDASEYFAWEIFSGDMEDYDDDDDDDSY 296

Query: 173 EGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 206
           +GMWDDE RLEELELRFY+G  EDAG+YGWP SP
Sbjct: 297 DGMWDDEQRLEELELRFYEG-NEDAGLYGWPLSP 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467167|ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera] gi|359496684|ref|XP_003635300.1| PREDICTED: F-box protein FBW2 isoform 2 [Vitis vinifera] gi|296085646|emb|CBI29445.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 129/206 (62%), Positives = 158/206 (76%), Gaps = 5/206 (2%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SD IV ++A +LS +TFLD+SYC K+GAPALEAIGKHCK L  L R MHPL+  DKL+Q
Sbjct: 117 ISDPIVEEVAWKLSTITFLDVSYCRKMGAPALEAIGKHCKFLTGLRRIMHPLEIIDKLTQ 176

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA AIA+TMPKLK LE+AY ++STE VLKIL+SC  LE LD+RGCW+VKLD+K +K  
Sbjct: 177 DDEALAIAATMPKLKHLEIAYLLVSTEPVLKILASCCELELLDVRGCWNVKLDEKLIK-K 235

Query: 121 FPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEG 180
           F  LKV+GP V+D YE N WDDCS YS  S YLAW+F+AGEM  Y  DDE+Y   W+DE 
Sbjct: 236 FSGLKVVGPLVIDCYEGNGWDDCSAYSGSSGYLAWDFVAGEMDYY--DDELY-AAWEDES 292

Query: 181 RLEELELRFYDGIEEDAGIYGWPPSP 206
            +++LELRFYDG + D   + WP SP
Sbjct: 293 -MDDLELRFYDGFDADNAGFDWPQSP 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787397|emb|CAN62342.1| hypothetical protein VITISV_035646 [Vitis vinifera]

 Score =  234 bits (597), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/209 (59%), Positives = 150/209 (71%), Gaps = 26/209 (12%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SDS+V +IAGR S +TFLD+S C+K+G+ ALEAIGK+CK LV LCRNMHPL TA KLSQ
Sbjct: 40  ISDSLVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQ 99

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           D+EA+AIA+TMPKLK LEMAYH++ST+ VL+ILS C  LE LDLRGCW V+L+ KF+K  
Sbjct: 100 DEEAHAIATTMPKLKHLEMAYHLLSTKSVLEILSCCPELELLDLRGCWHVELNVKFLKEK 159

Query: 121 FPNLKVLGPFVMD---YYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWD 177
           FP L+VLGP V+D   YYE+N+ DD SDY                      DE  +G WD
Sbjct: 160 FPKLRVLGPVVVDYCRYYEMNECDDYSDY----------------------DESSDGTWD 197

Query: 178 DEGRLEELELRFYDGIEEDAGIYGWPPSP 206
           DEG LEELE+RFY+G  E    YGWP SP
Sbjct: 198 DEGGLEELEVRFYEGFGEHPE-YGWPTSP 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413178|ref|NP_567343.1| F-box protein FBW2 [Arabidopsis thaliana] gi|30680931|ref|NP_849346.1| F-box protein FBW2 [Arabidopsis thaliana] gi|42572853|ref|NP_974523.1| F-box protein FBW2 [Arabidopsis thaliana] gi|145332987|ref|NP_001078359.1| F-box protein FBW2 [Arabidopsis thaliana] gi|238480265|ref|NP_001154215.1| F-box protein FBW2 [Arabidopsis thaliana] gi|75267749|sp|Q9ZPE4.1|FBW2_ARATH RecName: Full=F-box protein FBW2; AltName: Full=SKP1-interacting partner 18 gi|4325371|gb|AAD17367.1| contains similarity to Medicago truncatula N7 protein (GB:Y17613) [Arabidopsis thaliana] gi|7267540|emb|CAB78022.1| putative protein [Arabidopsis thaliana] gi|21536818|gb|AAM61150.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|27311651|gb|AAO00791.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|30984530|gb|AAP42728.1| At4g08980 [Arabidopsis thaliana] gi|222423880|dbj|BAH19904.1| AT4G08980 [Arabidopsis thaliana] gi|332657303|gb|AEE82703.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657304|gb|AEE82704.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657305|gb|AEE82705.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657306|gb|AEE82706.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657307|gb|AEE82707.1| F-box protein FBW2 [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/210 (59%), Positives = 153/210 (72%), Gaps = 14/210 (6%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S 
Sbjct: 118 LTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSH 177

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query: 121 FPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMW 176
           FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  +E  W
Sbjct: 238 FPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FEHGW 295

Query: 177 DDEGRLEELELRFYDGIEEDAGIYGWPPSP 206
           DD    E   L        D   + WPPSP
Sbjct: 296 DDNFYAENAVL--------DMEPHIWPPSP 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813231|ref|XP_002874499.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297320336|gb|EFH50758.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/210 (57%), Positives = 154/210 (73%), Gaps = 14/210 (6%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +++S V  +A +LS++TFLDLSYC K+G  A++A+GKHCK L   CRNMHPLD A  +S 
Sbjct: 118 LTNSGVVNVAEKLSSLTFLDLSYCCKVGPEAIQALGKHCKSLREFCRNMHPLDVASVVSH 177

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           DDEA AIA+TMPKLKRLE+AYH +STE VLKILSSC  LEFL+LRGCWDV+LD+KF K  
Sbjct: 178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSSCIFLEFLELRGCWDVQLDNKFFKEK 237

Query: 121 FPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMW 176
           FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  ++  W
Sbjct: 238 FPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FDHGW 295

Query: 177 DDEGRLEELELRFYDGIEEDAGIYGWPPSP 206
           DD    +   L        D   + WPPSP
Sbjct: 296 DDNFNADNAIL--------DMEPHIWPPSP 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492882|ref|XP_002285756.2| PREDICTED: F-box protein FBW2 [Vitis vinifera]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 118/198 (59%), Positives = 144/198 (72%), Gaps = 25/198 (12%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SDS+V +IAGR S +TFLD+S C+K+G+ ALEAIGK+CK LV LCRNMHPL TA KLSQ
Sbjct: 116 ISDSLVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQ 175

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
           D+EA+AIA+TMPKLK LEMAYH++ST+ VL+ILS C  LE LDLRGCW V+L+ KF+K  
Sbjct: 176 DEEAHAIATTMPKLKHLEMAYHLLSTKSVLEILSCCPELELLDLRGCWHVELNVKFLKEK 235

Query: 121 FPNLKVLGPFVMD---YYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWD 177
           FP L+VLGP V+D   YYE+N+ DD SDY                      DE  +G WD
Sbjct: 236 FPKLRVLGPVVVDYCRYYEMNECDDYSDY----------------------DESSDGTWD 273

Query: 178 DEGRLEELELRFYDGIEE 195
           DEG LEELE+RFY+G  E
Sbjct: 274 DEGGLEELEVRFYEGFGE 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065902|ref|XP_002454240.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor] gi|241934071|gb|EES07216.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/207 (56%), Positives = 142/207 (68%), Gaps = 6/207 (2%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SDSIV  +A RLS VTFLD+S C+KIGA ALEA GKHCK LV L R MHP+D  DK+ Q
Sbjct: 164 ISDSIVETVAPRLSNVTFLDISSCTKIGARALEAFGKHCKSLVGLRRVMHPIDLVDKVCQ 223

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
            DEA+AIA +MPKL+ LEM Y +I+TE VL+IL  C  L+FLDLRGCW V  DDKF++  
Sbjct: 224 HDEAHAIACSMPKLRHLEMGYMLIATEAVLEILGQCRDLKFLDLRGCWTV--DDKFLRER 281

Query: 121 FPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEG 180
            P L+VLGP V D YE + W++CSDYSD S   +WEF+  +      DD   E +WDD  
Sbjct: 282 HPGLRVLGPRVDDCYENSYWEECSDYSDDSSIYSWEFMDDDYYAVGSDD---EAIWDDGQ 338

Query: 181 RLEELELRFY-DGIEEDAGIYGWPPSP 206
            LE LE+RFY  G  E    + WPPSP
Sbjct: 339 GLENLEVRFYGGGFSESFAGFDWPPSP 365

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2122308	317	FBW2 "AT4G08980" [Arabidopsis	0.951	0.618	0.566	1.8e-55
TAIR|locus:2115949	302	AT4G05460 "AT4G05460" [Arabido	0.5	0.341	0.385	2.6e-12
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.606	0.416	0.338	5.7e-11
TAIR|locus:2118736	301	AT4G30640 "AT4G30640" [Arabido	0.606	0.415	0.297	2.3e-05
TAIR|locus:2140715	220	AT4G03630 "AT4G03630" [Arabido	0.490	0.459	0.349	4.6e-05
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.529	0.443	0.309	0.00022

TAIR|locus:2122308 FBW2 "AT4G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 119/210 (56%), Positives = 144/210 (68%)

Query:     1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
             +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S 
Sbjct:   118 LTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSH 177

Query:    61 DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 120
             DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  
Sbjct:   178 DDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEK 237

Query:   121 FPNLKVLGPFVMDYYE-INDWDDC-SDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXXWD 177
             FP++KVLGP V+ +Y+ INDW+DC SDY SDGS+YLAWEF                  WD
Sbjct:   238 FPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDEFEHG-WD 296

Query:   178 DEGRXXXXXXRFY-DGIEEDAGIYGWPPSP 206
             D          FY +    D   + WPPSP
Sbjct:   297 DN---------FYAENAVLDMEPHIWPPSP 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010608 "posttranscriptional regulation of gene expression" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

TAIR|locus:2115949 AT4G05460 "AT4G05460" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 42/109 (38%), Positives = 62/109 (56%)

Query:    19 LDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE 78
             L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AIA TMPKL+ L+
Sbjct:   145 LELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQ 198

Query:    79 MAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 127
             +  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct:   199 LCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 5.7e-11, P = 5.7e-11
 Identities = 47/139 (33%), Positives = 71/139 (51%)

Query:     1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM------H---- 50
             ++D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+      H    
Sbjct:   125 VTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSV 184

Query:    51 PLDTADKLSQDD--EANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108
             P +  D   QD   EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC 
Sbjct:   185 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC- 243

Query:   109 DVKLDDKFMKGNFPNLKVL 127
              V L  + +  N   LK L
Sbjct:   244 -VHLSSRDITSNVSRLKWL 261

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2118736 AT4G30640 "AT4G30640" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 42/141 (29%), Positives = 68/141 (48%)

Query:     1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP-----LDTA 55
             ++D+ + +IA     +  LD+SY   I   +L  +G+ C+ L +L RN+ P     L T 
Sbjct:   137 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 196

Query:    56 ----DKLSQ-----DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 106
                 D L+      + EA  I   M +LK LE+ Y  ++   +  +   C+ LE++DLRG
Sbjct:   197 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 256

Query:   107 CWDVKLDDKFMKGNFPNLKVL 127
             C  +   D  +  N   LK L
Sbjct:   257 CISLTRSD--INTNTSGLKNL 275

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2140715 AT4G03630 "AT4G03630" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 36/103 (34%), Positives = 51/103 (49%)

Query:    10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 69
             A +L  +  L+LSYC  I    LEAIG  C  L  L  N          + D +A  IA 
Sbjct:    84 AMKLPLLEDLELSYCL-IKGKNLEAIGFACLHLKTLKLNCQGFKFPG-FTYDHDALGIAK 141

Query:    70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 112
              MP+L+ L++  + +S   +  I   C  LE LDLR C+++ L
Sbjct:   142 RMPELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINL 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00022, P = 0.00022
 Identities = 35/113 (30%), Positives = 54/113 (47%)

Query:     6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 65
             V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A 
Sbjct:   138 VVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVAL 193

Query:    66 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 118
             AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct:   194 AIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       184   0.00078  110 3  11 22  0.42    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.25u 0.11s 15.36t   Elapsed:  00:00:00
  Total cpu time:  15.25u 0.11s 15.36t   Elapsed:  00:00:00
  Start:  Sat May 11 04:18:01 2013   End:  Sat May 11 04:18:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPE4	FBW2_ARATH	No assigned EC number	0.5904	0.9514	0.6182	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0452 SubName- Full=Putative uncharacterized protein; (322 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-04

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 15/134 (11%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADK 57
            D  +  +A     +  LDL  C  I    + A+  +C  L  +     RN H       
Sbjct: 66  DDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGH------- 118

Query: 58  LSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCW---DVKLD 113
           L  D   +A+      L+ +  A   ++ + V ++ S C+  LE L L  C    D  + 
Sbjct: 119 LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIP 178

Query: 114 DKFMKGNFPNLKVL 127
                  FPNL VL
Sbjct: 179 AILASNYFPNLSVL 192

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG4341	483	consensus F-box protein containing LRR [General fu	99.35
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.29
KOG4341	483	consensus F-box protein containing LRR [General fu	99.21
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.75
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.43
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.35
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.3
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.12
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.87
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.55
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.41
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.36
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.23
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.19
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.18
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.17
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.11
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.76
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.7
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.69
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.62
PLN03150	623	hypothetical protein; Provisional	96.57
PLN03150	623	hypothetical protein; Provisional	96.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.24
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.07
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.85
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.78
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	95.75
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.45
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	95.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.25
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.2
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	95.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.96
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.73
KOG4308	478	consensus LRR-containing protein [Function unknown	94.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	94.03
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.95
KOG0472	565	consensus Leucine-rich repeat protein [Function un	93.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.39
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	93.32
KOG4308	478	consensus LRR-containing protein [Function unknown	93.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	92.64
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	88.68
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	88.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	87.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	87.05
PRK15386	426	type III secretion protein GogB; Provisional	85.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	83.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	83.23

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.35  E-value=1.8e-13  Score=120.37  Aligned_cols=120  Identities=24%  Similarity=0.319  Sum_probs=93.3

Q ss_pred             CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616            2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY   81 (206)
Q Consensus         2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~   81 (206)
                      .++.+..+++.||+++.|+|.+|.++|+..+..+++.|++|+.|.|..+      ..+++..+..+++.||+|++||++.
T Consensus       152 ~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c------~~iT~~~Lk~la~gC~kL~~lNlSw  225 (483)
T KOG4341|consen  152 GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC------SSITDVSLKYLAEGCRKLKYLNLSW  225 (483)
T ss_pred             CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc------chhHHHHHHHHHHhhhhHHHhhhcc
Confidence            4566777888888888888888888888888888888888888887532      1457778888888888888888888


Q ss_pred             Cc-CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHH---HhcCCCCceeCC
Q 028616           82 HV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM---KGNFPNLKVLGP  129 (206)
Q Consensus        82 ~~-it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l---~~~~~~L~~L~~  129 (206)
                      |. |+..++..+.++|+.|+.+.++||...  ....+   ...|+-+.++++
T Consensus       226 c~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl  275 (483)
T KOG4341|consen  226 CPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNL  275 (483)
T ss_pred             CchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccch
Confidence            86 888888888888888888888888877  44443   255555666653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.34  E-value=2.9e-12  Score=114.64  Aligned_cols=127  Identities=30%  Similarity=0.407  Sum_probs=92.8

Q ss_pred             HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc----------------------cCCCCCC-CCC
Q 028616            4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------------------PLDTADK-LSQ   60 (206)
Q Consensus         4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~----------------------~~~~~g~-~v~   60 (206)
                      .++..+.+.+|+|+.|.+..|..+++.++.+++..|++|+.|.++..                      .++.... .++
T Consensus       178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is  257 (482)
T KOG1947|consen  178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT  257 (482)
T ss_pred             HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence            44455555566666666666666666666666666666666666430                      0111112 378


Q ss_pred             hHHHHHHHhcCCCCcEEEccCCc-CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCCCCc
Q 028616           61 DDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGPFVM  132 (206)
Q Consensus        61 d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~~~~  132 (206)
                      +.++.+++..||+|++|.+.+|. +|+.++.+++++||+|++|+|++|..+  ++..   +...|++|+.|.....
T Consensus       258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHHHHHHHHhCcchhhhhhhhc
Confidence            99999999999999999999998 999999999999999999999999998  5443   3466998888776543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.8e-12  Score=108.41  Aligned_cols=121  Identities=26%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616            2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY   81 (206)
Q Consensus         2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~   81 (206)
                      +|..+..|| +..+|+.|+|+.|..+|..+++.|...|+.|..|+|+++..      .++..-.+++.--++|++|||+|
T Consensus       223 dD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l------~~~~Vtv~V~hise~l~~LNlsG  295 (419)
T KOG2120|consen  223 DDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL------FTEKVTVAVAHISETLTQLNLSG  295 (419)
T ss_pred             CcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc------cchhhhHHHhhhchhhhhhhhhh
Confidence            455666666 78999999999999999999999999999999999986632      12332233343447888888888


Q ss_pred             Cc--CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           82 HV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        82 ~~--it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      ++  +-...+..+++.||+|..|||+.|..+..+-....-+++.|++|.+
T Consensus       296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            75  6666777788888888888888887773322223355666766665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.21  E-value=1.7e-11  Score=107.97  Aligned_cols=120  Identities=22%  Similarity=0.339  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA   80 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~   80 (206)
                      |+|..+.++.++|++|++|-|+.|.++|+.++..++++|+.|+.|.+....      .+.+..+..++.+||.|+.|.|+
T Consensus       307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~------~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG------LITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc------eehhhhHhhhccCCchhccCChh
Confidence            466777777777777777777777777777777777777777777664221      23444566666666777777666


Q ss_pred             CCc-CCHHHHHHHHh---CCCCccEEeeeCCCCCCCChHHHH--hcCCCCceeC
Q 028616           81 YHV-ISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLG  128 (206)
Q Consensus        81 ~~~-it~~~l~~il~---~c~~Le~LdL~~C~~v~~~~~~l~--~~~~~L~~L~  128 (206)
                      .|. ||++|+..+..   +...|+.|.|.+|+.+  ++..+.  ..|++|+.+.
T Consensus       381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i--~d~~Le~l~~c~~Leri~  432 (483)
T KOG4341|consen  381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI--TDATLEHLSICRNLERIE  432 (483)
T ss_pred             hhhhhhhhhhhhhhhccccccccceeeecCCCCc--hHHHHHHHhhCcccceee
Confidence            665 66665554433   2245555555555555  333322  4455555433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.12  E-value=1e-10  Score=104.65  Aligned_cols=97  Identities=22%  Similarity=0.264  Sum_probs=83.3

Q ss_pred             HHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-C
Q 028616            6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-I   84 (206)
Q Consensus         6 l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-i   84 (206)
                      ...+++.|++|+.|++++|..+|+.++.++++.||+|+.|++..+.      .+++.++.+|+..||+|++|+|++|. +
T Consensus       235 ~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~------~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  235 LLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS------NLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC------ccchhHHHHHHHhcCcccEEeeecCccc
Confidence            3447777999999999999889999999999999999999875432      27899999999999999999999997 8


Q ss_pred             CHHHHHHHHhCCCCccEEeeeCCC
Q 028616           85 STEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        85 t~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      ++.++..++.+||+|+.|.+..+.
T Consensus       309 ~d~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  309 TDSGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             hHHHHHHHHHhCcchhhhhhhhcC
Confidence            899999999999988887655544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=1.1e-10  Score=99.53  Aligned_cols=123  Identities=17%  Similarity=0.235  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA   80 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~   80 (206)
                      +|..++..+...|+.|..|+|++|...+++.-.++++--++|++|+|++.+-     .+.+..+..++++||+|.+|+|+
T Consensus       247 ~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr-----nl~~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  247 FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR-----NLQKSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh-----hhhhhHHHHHHHhCCceeeeccc
Confidence            4667888899999999999999999888886666777789999999975432     34566788888999999999999


Q ss_pred             CCc-CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           81 YHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        81 ~~~-it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .|. +++ ++..++-.++-|++|.|+.|..+..+.-......|.|.+|..
T Consensus       322 D~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  322 DSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             cccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe
Confidence            997 888 555555579999999999998873221111244555655554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.86  E-value=6.8e-10  Score=88.71  Aligned_cols=114  Identities=23%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             HHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616            7 AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST   86 (206)
Q Consensus         7 ~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~   86 (206)
                      +.+...+.+|+.|+|++|.-.+-.++..    +++|+.|.++.+.+.    .+.    ..+...+|+|++|.|++|+|++
T Consensus        35 e~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~~L~~L~L~~N~I~----~i~----~~l~~~lp~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   35 ENLGATLDKLEVLDLSNNQITKLEGLPG----LPRLKTLDLSNNRIS----SIS----EGLDKNLPNLQELYLSNNKISD  102 (175)
T ss_dssp             -S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS-------S-C----HHHHHH-TT--EEE-TTS---S
T ss_pred             cchhhhhcCCCEEECCCCCCccccCccC----hhhhhhcccCCCCCC----ccc----cchHHhCCcCCEEECcCCcCCC
Confidence            3444456778888888874322334443    477888888766442    111    1233468999999999999887


Q ss_pred             HHHHHHHhCCCCccEEeeeCCCCCCCChHH--HHhcCCCCceeCCCCc
Q 028616           87 EIVLKILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPFVM  132 (206)
Q Consensus        87 ~~l~~il~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~~~  132 (206)
                      -.-...++.||+|+.|+|.+++......+.  +...+|+|+.|.....
T Consensus       103 l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  103 LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            655566778999999999999877555553  5689999999998554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.85  E-value=5.5e-10  Score=93.24  Aligned_cols=115  Identities=20%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH
Q 028616            8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE   87 (206)
Q Consensus         8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~   87 (206)
                      .+...+..|+.|++.++...|-.++..+    |+||+|.++.+..      ....++..++..+|+|++|++++|+|++-
T Consensus        37 gl~d~~~~le~ls~~n~gltt~~~~P~L----p~LkkL~lsdn~~------~~~~~l~vl~e~~P~l~~l~ls~Nki~~l  106 (260)
T KOG2739|consen   37 GLTDEFVELELLSVINVGLTTLTNFPKL----PKLKKLELSDNYR------RVSGGLEVLAEKAPNLKVLNLSGNKIKDL  106 (260)
T ss_pred             cccccccchhhhhhhccceeecccCCCc----chhhhhcccCCcc------cccccceehhhhCCceeEEeecCCccccc
Confidence            3445577888899988877777777666    7899999986621      12345667788889999999999999886


Q ss_pred             HHHHHHhCCCCccEEeeeCCCCCCCChHH--HHhcCCCCceeCCCCc
Q 028616           88 IVLKILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPFVM  132 (206)
Q Consensus        88 ~l~~il~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~~~  132 (206)
                      .-..-++..++|..|++++|.....++..  +...+|+|++|.....
T Consensus       107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            66667788999999999999988777775  4477889999888665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.83  E-value=1.6e-09  Score=93.80  Aligned_cols=97  Identities=23%  Similarity=0.281  Sum_probs=47.9

Q ss_pred             HHHHHhcCCCCcEEEeccCCCCCHHHHHHHH---hcCCCCceEEeecccCCCCCCCCChHHHHHHHhcC---CCCcEEEc
Q 028616            6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---PKLKRLEM   79 (206)
Q Consensus         6 l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~---~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---p~Lk~L~L   79 (206)
                      +..+.+.+|.|+.+.++.++ |-.+|+.+++   ++||+|+.|+|..+       .++..+..++|..+   |+|+.|++
T Consensus       177 ~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DN-------tft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDN-------TFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             HHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccc-------hhhhHHHHHHHHHhcccchheeecc
Confidence            33444445556666655542 4444443332   34566666655433       23445555554433   44555555


Q ss_pred             cCCcCCHHHHHHHHh----CCCCccEEeeeCCCCC
Q 028616           80 AYHVISTEIVLKILS----SCALLEFLDLRGCWDV  110 (206)
Q Consensus        80 ~~~~it~~~l~~il~----~c~~Le~LdL~~C~~v  110 (206)
                      +.|.+.+.|..+++.    +.|.|+.|.+.+|.-.
T Consensus       249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            555555555444332    2355555555555533

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.82  E-value=2.7e-08  Score=84.74  Aligned_cols=87  Identities=22%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             CCCcEEEeccCCCCCHHHHHH---HHhcCCCCceEEeecccCCCCCCCCChHHHHHHHh---cCCCCcEEEccCCcCCHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEA---IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTE   87 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~---l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~---~~p~Lk~L~L~~~~it~~   87 (206)
                      ++|+.|+|++|. ++..++..   ....|++|+.|.++.+.       ++..++..++.   .+++|++|+|++|.+++.
T Consensus       137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-------IGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-------CchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            666666666653 44333322   22344566666665432       22233332222   223555555555544444


Q ss_pred             HHHHH---HhCCCCccEEeeeCCC
Q 028616           88 IVLKI---LSSCALLEFLDLRGCW  108 (206)
Q Consensus        88 ~l~~i---l~~c~~Le~LdL~~C~  108 (206)
                      ++..+   +..+++|++|++++|.
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCc
Confidence            33222   2234445555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.76  E-value=9.6e-09  Score=89.00  Aligned_cols=93  Identities=24%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcC---CCCceEEeecccCCCCCCCCChHHHHHHH----hcCCCCcEEEccCC
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAIA----STMPKLKRLEMAYH   82 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~g~~v~d~~~~~ia----~~~p~Lk~L~L~~~   82 (206)
                      ..+||+|++|+|+.|+ +|..|-.+|++..   |+|+.|+++.+       .+...|+.+++    ...|+|+.|.|.||
T Consensus       209 l~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dc-------ll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDC-------LLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccc-------ccccccHHHHHHHHhccCCCCceeccCcc
Confidence            3458888888888775 5777766777654   44445555543       34555555554    34477888888888


Q ss_pred             cCCHHHHHHHHhC---CCCccEEeeeCCCCC
Q 028616           83 VISTEIVLKILSS---CALLEFLDLRGCWDV  110 (206)
Q Consensus        83 ~it~~~l~~il~~---c~~Le~LdL~~C~~v  110 (206)
                      .||.++..+++..   -|.|++|+|++|..-
T Consensus       281 eIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  281 EITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            7777776665543   377888888877763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.75  E-value=6.5e-08  Score=82.41  Aligned_cols=117  Identities=19%  Similarity=0.087  Sum_probs=81.1

Q ss_pred             HHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcC---CCCceEEeecccCCCCCCCCChHHHHHH---HhcCCCCcEEEcc
Q 028616            7 AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEMA   80 (206)
Q Consensus         7 ~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~g~~v~d~~~~~i---a~~~p~Lk~L~L~   80 (206)
                      ......+++|+.|+|++|. ++..++..+++.+   ++|+.|.++.+.       +++.++..+   ...+|+|++|+|+
T Consensus       158 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-------i~~~~~~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         158 AKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-------LTDEGASALAETLASLKSLEVLNLG  229 (319)
T ss_pred             HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-------cChHHHHHHHHHhcccCCCCEEecC
Confidence            3344467889999999974 7877777766544   489999887653       344444443   3467899999999


Q ss_pred             CCcCCHHHHHHHHhCC----CCccEEeeeCCCCCCCChHHHH---hcCCCCceeCCCC
Q 028616           81 YHVISTEIVLKILSSC----ALLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGPFV  131 (206)
Q Consensus        81 ~~~it~~~l~~il~~c----~~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~~~  131 (206)
                      +|.+++.++..++..+    ++|++|++++|.........+.   ..+++|+.+.+..
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence            9999998888887775    7999999999865411112222   3446677776643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.7e-08  Score=89.73  Aligned_cols=99  Identities=22%  Similarity=0.058  Sum_probs=78.5

Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH   82 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~   82 (206)
                      +.+....++.||+++.|+||.+-.-.-..+..|++.+|+|+.|+|+.+.+..........       .+++||.|.|++|
T Consensus       135 ~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-------~l~~lK~L~l~~C  207 (505)
T KOG3207|consen  135 DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-------LLSHLKQLVLNSC  207 (505)
T ss_pred             ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-------hhhhhheEEeccC
Confidence            334446788899999999999744345778889999999999999877654332222211       6689999999999


Q ss_pred             cCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           83 VISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        83 ~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .++...+..++..||+|+.|.|..+.
T Consensus       208 Gls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  208 GLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            99999999999999999999998874

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.43  E-value=2.6e-07  Score=88.01  Aligned_cols=86  Identities=20%  Similarity=0.188  Sum_probs=66.7

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      -.+|+.|+|++...++......++..+|+|++|.+++.       .+..+.+..+..++|+|+.|+|++++|++-.   -
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-------~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-------QFDNDDFSQLCASFPNLRSLDISGTNISNLS---G  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-------eecchhHHHHhhccCccceeecCCCCccCcH---H
Confidence            67899999999888888899999999999999988743       3445568888889999999999999888752   2


Q ss_pred             HhCCCCccEEeeeCCC
Q 028616           93 LSSCALLEFLDLRGCW  108 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~  108 (206)
                      ++++++|+.|.+++-+
T Consensus       191 IS~LknLq~L~mrnLe  206 (699)
T KOG3665|consen  191 ISRLKNLQVLSMRNLE  206 (699)
T ss_pred             HhccccHHHHhccCCC
Confidence            3455555555555433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.35  E-value=1.4e-07  Score=75.43  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             CHHHHHHHHhc--CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEc
Q 028616            2 SDSIVAQIAGR--LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEM   79 (206)
Q Consensus         2 sd~~l~~l~~~--~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L   79 (206)
                      |...++.+++.  +..+++|+|+++ .|+  .++.++..+.+|+.|.|+.+.+.       .  +..+ ..+++|+.|++
T Consensus         5 t~~~i~~~~~~~n~~~~~~L~L~~n-~I~--~Ie~L~~~l~~L~~L~Ls~N~I~-------~--l~~l-~~L~~L~~L~L   71 (175)
T PF14580_consen    5 TANMIEQIAQYNNPVKLRELNLRGN-QIS--TIENLGATLDKLEVLDLSNNQIT-------K--LEGL-PGLPRLKTLDL   71 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S-----------TT-----TT--EEE-
T ss_pred             ccccccccccccccccccccccccc-ccc--cccchhhhhcCCCEEECCCCCCc-------c--ccCc-cChhhhhhccc
Confidence            44556666653  567899999997 465  46677777899999999877542       1  1112 26799999999


Q ss_pred             cCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           80 AYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        80 ~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ++|+|+.-+- .+.+.||+|+.|.|+++.-.....-.-.+.+|+|+.|.+..
T Consensus        72 ~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   72 SNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             -SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred             CCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence            9999887521 34467999999999988755334322236799999998864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.4e-07  Score=82.49  Aligned_cols=121  Identities=20%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             HHHHHHhc---CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616            5 IVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY   81 (206)
Q Consensus         5 ~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~   81 (206)
                      |+..|+.+   ++.|+.+.|.+| .+...+....++.||+++.|+|+.+-+      -.-..+..||+.+|+|+.|+|+.
T Consensus       109 GfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~------~nw~~v~~i~eqLp~Le~LNls~  181 (505)
T KOG3207|consen  109 GFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLF------HNWFPVLKIAEQLPSLENLNLSS  181 (505)
T ss_pred             cHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhH------HhHHHHHHHHHhcccchhccccc
Confidence            45566655   677888899886 478778778899999999999986532      13577889999999999999999


Q ss_pred             CcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCCc
Q 028616           82 HVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM  132 (206)
Q Consensus        82 ~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~~  132 (206)
                      |++..-.=....-.+++|+.|.|++|...--+-..+...||.|+.|.+..-
T Consensus       182 Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  182 NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            974332212222267899999999998651111234588999999888543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=2.8e-06  Score=68.99  Aligned_cols=105  Identities=19%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             CcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCHHHHHHHHh
Q 028616           16 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILS   94 (206)
Q Consensus        16 L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l~~il~   94 (206)
                      ++.++-+++ .|...|+..+ +.++.|+.|.+..+      +.+.+.++..|+.-.|+|+.|+|++|. ||+.|+.-+. 
T Consensus       103 IeaVDAsds-~I~~eGle~L-~~l~~i~~l~l~~c------k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-  173 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHL-RDLRSIKSLSLANC------KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-  173 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHH-hccchhhhheeccc------cchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-
Confidence            466777765 5889999988 45788888888644      357889999999878999999999997 9999997766 


Q ss_pred             CCCCccEEeeeCCCCCCCChH---HHHhcCCCCceeCC
Q 028616           95 SCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKVLGP  129 (206)
Q Consensus        95 ~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~L~~  129 (206)
                      .+++|+.|.|++-..|.--..   .++...|++...+.
T Consensus       174 ~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~  211 (221)
T KOG3864|consen  174 KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP  211 (221)
T ss_pred             HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence            799999999988877622211   34578888887776

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.87  E-value=2.7e-05  Score=76.45  Aligned_cols=95  Identities=22%  Similarity=0.255  Sum_probs=48.8

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCC---------------CCCCCChHHHHHHHhcCCCCc
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT---------------ADKLSQDDEANAIASTMPKLK   75 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~---------------~g~~v~d~~~~~ia~~~p~Lk   75 (206)
                      ..+++|+.|+|++|. ++...-..+...+++|+.|+|+.+.+..               .+..+.......+ ..+++|+
T Consensus        90 ~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~  167 (968)
T PLN00113         90 FRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLK  167 (968)
T ss_pred             hCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH-hcCCCCC
Confidence            368888888888874 4433333445567788888876554310               0011111111112 2556666


Q ss_pred             EEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           76 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        76 ~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      +|+|++|.++...-. -+.++++|++|+|++|.
T Consensus       168 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        168 VLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             EEECccCcccccCCh-hhhhCcCCCeeeccCCC
Confidence            666666654332111 12345666666666554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.86  E-value=1.6e-05  Score=43.47  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=23.7

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHh
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGK   37 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~   37 (206)
                      ||+|+.|+|++|.+||+.|+.+|++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            7999999999999999999999976

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=3.3e-05  Score=73.78  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCC-CCCC--------------CC-ChHHHHHH
Q 028616            4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD-TADK--------------LS-QDDEANAI   67 (206)
Q Consensus         4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~-~~g~--------------~v-~d~~~~~i   67 (206)
                      .....++..+|.|++|.+++- .+...-+..+.+++|||+.|.++..++. ..|.              .+ +-..+..+
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L  216 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDL  216 (699)
T ss_pred             cHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHH
Confidence            345678888999999999985 4555558899999999999999876653 2221              11 22344455


Q ss_pred             HhcCCCCcEEEccCCc-CCHH-HHHHHH---hCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCCC
Q 028616           68 ASTMPKLKRLEMAYHV-ISTE-IVLKIL---SSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGPF  130 (206)
Q Consensus        68 a~~~p~Lk~L~L~~~~-it~~-~l~~il---~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~~  130 (206)
                      . .+.+|+.|+||..+ .+.. -+...+   ..+|+|++||.++-.   .+...   +....|+|+.+...
T Consensus       217 F-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd---i~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  217 F-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD---INEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             h-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc---hhHHHHHHHHHhCccHhhhhhh
Confidence            5 67888888888876 2222 233333   236888888877532   23333   23566777776653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=6.3e-05  Score=61.25  Aligned_cols=93  Identities=17%  Similarity=0.184  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA   80 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~   80 (206)
                      |...|++.+- .++.|+.|.+.+|..+.+-++..|+.-.++|+.|.|+.++      .|++.++..+. ++++||.|.|.
T Consensus       113 I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~------rIT~~GL~~L~-~lknLr~L~l~  184 (221)
T KOG3864|consen  113 IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP------RITDGGLACLL-KLKNLRRLHLY  184 (221)
T ss_pred             HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCC------eechhHHHHHH-HhhhhHHHHhc
Confidence            3456777776 6999999999999999999999999999999999998443      56888888776 89999999999


Q ss_pred             CCc-CCHHH-HHHHHh-CCCCccE
Q 028616           81 YHV-ISTEI-VLKILS-SCALLEF  101 (206)
Q Consensus        81 ~~~-it~~~-l~~il~-~c~~Le~  101 (206)
                      +-. +.+.+ +..+++ .+|++..
T Consensus       185 ~l~~v~~~e~~~~~Le~aLP~c~I  208 (221)
T KOG3864|consen  185 DLPYVANLELVQRQLEEALPKCDI  208 (221)
T ss_pred             CchhhhchHHHHHHHHHhCcccce
Confidence            876 55543 344443 4576654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.56  E-value=0.0001  Score=72.39  Aligned_cols=15  Identities=27%  Similarity=0.499  Sum_probs=6.8

Q ss_pred             cCCCCcEEEccCCcC
Q 028616           70 TMPKLKRLEMAYHVI   84 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~i   84 (206)
                      ++++|++|+|++|.+
T Consensus       210 ~l~~L~~L~L~~n~l  224 (968)
T PLN00113        210 QMKSLKWIYLGYNNL  224 (968)
T ss_pred             CcCCccEEECcCCcc
Confidence            344444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.55  E-value=5.2e-05  Score=73.21  Aligned_cols=108  Identities=25%  Similarity=0.304  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCCCCcEEEeccC--CCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCC--------------hHHHHH
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYC--SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ--------------DDEANA   66 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c--~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~--------------d~~~~~   66 (206)
                      |..+..+. ..++|+.|+|++|  +-+.++.+..+    +.|+.|.|+++.+..-...+.              -..+-.
T Consensus       373 d~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe  447 (1081)
T KOG0618|consen  373 DSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE  447 (1081)
T ss_pred             ccchhhhc-cccceeeeeecccccccCCHHHHhch----HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh
Confidence            33444443 6788888888887  33555555544    456666666554321000000              000112


Q ss_pred             HHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHH
Q 028616           67 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM  117 (206)
Q Consensus        67 ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l  117 (206)
                      ++ .+|+|+.++|+.|.++...+...+.. |+|++|||+|+....++-+.+
T Consensus       448 ~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l  496 (1081)
T KOG0618|consen  448 LA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTL  496 (1081)
T ss_pred             hh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhh
Confidence            22 56899999999999998888776654 999999999999765555544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.43  E-value=0.00016  Score=39.39  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             CCCCcEEEccCCc-CCHHHHHHHHh
Q 028616           71 MPKLKRLEMAYHV-ISTEIVLKILS   94 (206)
Q Consensus        71 ~p~Lk~L~L~~~~-it~~~l~~il~   94 (206)
                      ||+|++|+|++|. ||+.++.+|++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5788888888886 88888888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.41  E-value=0.0012  Score=56.52  Aligned_cols=41  Identities=24%  Similarity=0.141  Sum_probs=27.1

Q ss_pred             hcCCCCcEEEeccCCCCCHHH---HHHHHhcCCCCceEEeecccC
Q 028616           11 GRLSAVTFLDLSYCSKIGAPA---LEAIGKHCKLLVVLCRNMHPL   52 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~---l~~l~~~c~~L~~L~L~~~~~   52 (206)
                      -+||+|+..+||.|. ++...   +.-+..+...|++|.++++.+
T Consensus        89 lkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          89 LKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             hcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            368999999998874 44433   333444557788888876554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.37  E-value=9.6e-05  Score=68.61  Aligned_cols=112  Identities=20%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCCCcEEEeccCC--CCCHHHHHHHHhcCCCCceEEeecccCCCCC-----------------C--C-CChHHHHHHHhc
Q 028616           13 LSAVTFLDLSYCS--KIGAPALEAIGKHCKLLVVLCRNMHPLDTAD-----------------K--L-SQDDEANAIAST   70 (206)
Q Consensus        13 ~~~L~~L~Ls~c~--~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g-----------------~--~-v~d~~~~~ia~~   70 (206)
                      |+.|+.|+|++|.  .+....+..+    .+|+.|+|+.++++.-.                 .  . .-.+++.++. +
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-g  390 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-G  390 (873)
T ss_pred             cccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc-c
Confidence            7888888888862  2233444444    23444444433321100                 0  0 1133444444 7


Q ss_pred             CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCCc
Q 028616           71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM  132 (206)
Q Consensus        71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~~  132 (206)
                      +|+|++|.|.||+|..-.-+++ .+++.||+|||.++.-..+...++ ..+ +||.|-+.+.
T Consensus       391 l~~LrkL~l~gNqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAF-e~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  391 LPSLRKLRLTGNQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAF-EPM-ELKELVMNSS  449 (873)
T ss_pred             chhhhheeecCceeeecchhhh-ccCcccceecCCCCcceeeccccc-ccc-hhhhhhhccc
Confidence            9999999999997443333332 489999999999876543333222 223 5666666443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=8e-05  Score=64.19  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=67.5

Q ss_pred             HHHHHHhcCCCCcEEEeccCCCCCH-HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc
Q 028616            5 IVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV   83 (206)
Q Consensus         5 ~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~   83 (206)
                      .+..++.+|+.++.|+|.+| +|++ .-+.+|.++.|.|+.|+|+++++...        +..+..-..+|+.|-|.|+.
T Consensus        62 d~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~--------I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   62 DVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD--------IKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             hHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc--------cccCcccccceEEEEEcCCC
Confidence            46678888999999999986 5664 66778889999999999988765321        01111133577888887777


Q ss_pred             CCHHHHHHHHhCCCCccEEeeeCC
Q 028616           84 ISTEIVLKILSSCALLEFLDLRGC  107 (206)
Q Consensus        84 it~~~l~~il~~c~~Le~LdL~~C  107 (206)
                      ++-..+...++..|.++.|+++.+
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccc
Confidence            777777777777777777766655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.24  E-value=9.1e-05  Score=62.22  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH--HH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IV   89 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~--~l   89 (206)
                      ++|+|+.|.+|.++.--..+|..+++.||+|+.|+++.+.+..      -..+..+ +.+++|+.|.++.|.++.-  -=
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~------lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyr  135 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD------LSTLRPL-KELENLKSLDLFNCSVTNLDDYR  135 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc------ccccchh-hhhcchhhhhcccCCccccccHH
Confidence            4889999999998555567999999999999999998775421      1122222 3668999999999986651  12


Q ss_pred             HHHHhCCCCccEEeeeCCCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v  110 (206)
                      ..+..-+|+|.+||-..+...
T Consensus       136 e~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  136 EKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             HHHHHHhhhhccccccccCCc
Confidence            355667899999877666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.23  E-value=0.0011  Score=56.63  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=70.1

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChH-------HHHHHHhcCCCCcEEEccCCcC
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-------EANAIASTMPKLKRLEMAYHVI   84 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~-------~~~~ia~~~p~Lk~L~L~~~~i   84 (206)
                      ....++.++||+|+ |+..+++.++++..+-+.|+...-.--+.|.. .++       -..+++ +||+|+.++||.|.+
T Consensus        28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~-kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAf  104 (388)
T COG5238          28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRD-KDELYSNLVMLLKALL-KCPRLQKVDLSDNAF  104 (388)
T ss_pred             hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhccc-HHHHHHHHHHHHHHHh-cCCcceeeecccccc
Confidence            48889999999986 88999999988776666665532111122221 111       123333 889999999999865


Q ss_pred             CH---HHHHHHHhCCCCccEEeeeCCCCCCCChHHH
Q 028616           85 ST---EIVLKILSSCALLEFLDLRGCWDVKLDDKFM  117 (206)
Q Consensus        85 t~---~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l  117 (206)
                      ..   .-+..++++-..|++|-|++|.--...+..+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri  140 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI  140 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHH
Confidence            44   4566778888999999999987665555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.21  E-value=2.4e-05  Score=51.21  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=16.8

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  107 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C  107 (206)
                      .+++|++|+|++|.|+.-.- ..++++++|++|++++|
T Consensus        23 ~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence            44555555555554432111 12345555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.19  E-value=0.00042  Score=42.69  Aligned_cols=37  Identities=24%  Similarity=0.213  Sum_probs=25.0

Q ss_pred             CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      |+|++|+|++|+|++  +-..+.+|++|+.|++++|...
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence            578888888888775  3333667888888888887543

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.00011  Score=62.78  Aligned_cols=105  Identities=22%  Similarity=0.169  Sum_probs=78.8

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +.+.+.||..+|. +++..   |.+..|.|+.|.|+.+.|.         .+.. ...|.+|+.|.|..|.|.+-.-.+.
T Consensus        18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvNkIs---------sL~p-l~rCtrLkElYLRkN~I~sldEL~Y   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVNKIS---------SLAP-LQRCTRLKELYLRKNCIESLDELEY   83 (388)
T ss_pred             HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeeccccc---------cchh-HHHHHHHHHHHHHhcccccHHHHHH
Confidence            4477889999985 67644   4566799999999876431         1222 3489999999999999999998999


Q ss_pred             HhCCCCccEEeeeCCCCCCCChH----HHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDK----FMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~----~l~~~~~~L~~L~~~~  131 (206)
                      ++++|+|+.|-|..++-..-.+.    .+.+..|+|++|.-..
T Consensus        84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence            99999999998865543322322    3558899999998743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.17  E-value=3.5e-05  Score=50.40  Aligned_cols=61  Identities=20%  Similarity=0.153  Sum_probs=42.7

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcC
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI   84 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~i   84 (206)
                      |+|+.|+|++| +++.-.- ...+.+++|+.|.++.+.+.    .+..   . ....+|+|++|+|++|+|
T Consensus         1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~l~----~i~~---~-~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNNLT----SIPP---D-AFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSSSES----EEET---T-TTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCccC----ccCH---H-HHcCCCCCCEEeCcCCcC
Confidence            78999999998 4553221 23356799999999877552    1111   1 234899999999999975

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.13  E-value=6.2e-05  Score=69.84  Aligned_cols=86  Identities=20%  Similarity=0.064  Sum_probs=51.8

Q ss_pred             CCCCcEEEeccCCC---CCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           13 LSAVTFLDLSYCSK---IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~---it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      .++|+.|+|+.|..   |-+ +- +..+..++|++|+|.++.+.    .|.   -+|+ .+++.|++|+|.+|.|..--.
T Consensus       364 lssL~~LdLr~N~ls~~IED-aa-~~f~gl~~LrkL~l~gNqlk----~I~---krAf-sgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  364 LSSLHKLDLRSNELSWCIED-AA-VAFNGLPSLRKLRLTGNQLK----SIP---KRAF-SGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             hhhhhhhcCcCCeEEEEEec-ch-hhhccchhhhheeecCceee----ecc---hhhh-ccCcccceecCCCCcceeecc
Confidence            66777777776531   122 22 22334688888888655331    222   2333 388999999999997554444


Q ss_pred             HHHHhCCCCccEEeeeCCCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v  110 (206)
                      .++-+-  +|+.|-++.-..+
T Consensus       434 nAFe~m--~Lk~Lv~nSssfl  452 (873)
T KOG4194|consen  434 NAFEPM--ELKELVMNSSSFL  452 (873)
T ss_pred             cccccc--hhhhhhhcccceE
Confidence            444332  7888877665555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.11  E-value=0.00026  Score=57.84  Aligned_cols=85  Identities=25%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             CCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH--
Q 028616           39 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF--  116 (206)
Q Consensus        39 c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~--  116 (206)
                      .+.|..|-|+.++|...+    .    .|...+|+|+.|.|.+|.|-.-+-..-+..||+|++|.+-++.......+.  
T Consensus        63 l~rL~tLll~nNrIt~I~----p----~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y  134 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRID----P----DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY  134 (233)
T ss_pred             ccccceEEecCCcceeec----c----chhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence            355666666655442111    1    123344677777777776666665556667777777766665544333332  


Q ss_pred             HHhcCCCCceeCCCC
Q 028616          117 MKGNFPNLKVLGPFV  131 (206)
Q Consensus       117 l~~~~~~L~~L~~~~  131 (206)
                      +..+.|+|+.|.+..
T Consensus       135 vl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  135 VLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEEecCcceEeehhh
Confidence            235666777766643

>PLN03210 Resistant to P

Probab=96.87  E-value=0.00056  Score=68.95  Aligned_cols=37  Identities=24%  Similarity=0.440  Sum_probs=24.0

Q ss_pred             CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      ++|++|+|++|.|+.  +-.-+..+++|+.|+|++|.++
T Consensus       846 ~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        846 TNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             cccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCc
Confidence            466666666666543  2222456788888888888776

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.81  E-value=0.00036  Score=67.60  Aligned_cols=106  Identities=21%  Similarity=0.170  Sum_probs=69.0

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH--
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL--   90 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~--   90 (206)
                      .+.|+.|.+.+| .+|++.+..+ .+.++||.|+|+.+.++       .--+..+. +++.|++|+|+||+++.-...  
T Consensus       358 ~~~Lq~LylanN-~Ltd~c~p~l-~~~~hLKVLhLsyNrL~-------~fpas~~~-kle~LeeL~LSGNkL~~Lp~tva  427 (1081)
T KOG0618|consen  358 HAALQELYLANN-HLTDSCFPVL-VNFKHLKVLHLSYNRLN-------SFPASKLR-KLEELEELNLSGNKLTTLPDTVA  427 (1081)
T ss_pred             hHHHHHHHHhcC-cccccchhhh-ccccceeeeeecccccc-------cCCHHHHh-chHHhHHHhcccchhhhhhHHHH
Confidence            456778888886 4799998876 56799999999877553       11123333 788999999999986654321  


Q ss_pred             ------HH------------HhCCCCccEEeeeCCCCCCCChHHHH-hcC-CCCceeCCCC
Q 028616           91 ------KI------------LSSCALLEFLDLRGCWDVKLDDKFMK-GNF-PNLKVLGPFV  131 (206)
Q Consensus        91 ------~i------------l~~c~~Le~LdL~~C~~v~~~~~~l~-~~~-~~L~~L~~~~  131 (206)
                            .+            +...|+|+.+||+.+...   .-.+. ..- |+||.|++..
T Consensus       428 ~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~---~~~l~~~~p~p~LkyLdlSG  485 (1081)
T KOG0618|consen  428 NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLS---EVTLPEALPSPNLKYLDLSG  485 (1081)
T ss_pred             hhhhhHHHhhcCCceeechhhhhcCcceEEecccchhh---hhhhhhhCCCcccceeeccC
Confidence                  11            112478899999855432   22222 222 6888887753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.0014  Score=56.72  Aligned_cols=84  Identities=19%  Similarity=0.169  Sum_probs=41.5

Q ss_pred             cEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCC
Q 028616           17 TFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC   96 (206)
Q Consensus        17 ~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c   96 (206)
                      +.|.+.+|.--+...+..++..|..++.|.|..+-+      ..-..+.+|.+++|.|+.|||+.|.++.. +..+-.-.
T Consensus        48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~  120 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPL  120 (418)
T ss_pred             hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccc
Confidence            344444543223334555666666666666654322      02245555666666666666666654432 11111233


Q ss_pred             CCccEEeeeCC
Q 028616           97 ALLEFLDLRGC  107 (206)
Q Consensus        97 ~~Le~LdL~~C  107 (206)
                      .+|+.|-|+|.
T Consensus       121 ~nl~~lVLNgT  131 (418)
T KOG2982|consen  121 KNLRVLVLNGT  131 (418)
T ss_pred             cceEEEEEcCC
Confidence            46666666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.71  E-value=0.0012  Score=34.97  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=17.6

Q ss_pred             CCCCcEEEccCCcCCHHHHHHHHh
Q 028616           71 MPKLKRLEMAYHVISTEIVLKILS   94 (206)
Q Consensus        71 ~p~Lk~L~L~~~~it~~~l~~il~   94 (206)
                      |++|++|+|++|.|++.++.+|++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhCC
Confidence            578899999998899988888763

...

>PLN03210 Resistant to P

Probab=96.70  E-value=0.0014  Score=66.07  Aligned_cols=38  Identities=24%  Similarity=0.241  Sum_probs=18.6

Q ss_pred             cCCCCcEEEccCCc-CCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           70 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~-it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      .+++|++|+|++|. ++.-..   .-++++|+.|+|++|..+
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRL  717 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCc
Confidence            45566666666553 222110   014556666666666543

syringae 6; Provisional

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.69  E-value=0.0011  Score=35.15  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=18.0

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHh
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGK   37 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~   37 (206)
                      |++|+.|+|++|. |++.|+.+|++
T Consensus         1 ~~~L~~L~l~~n~-i~~~g~~~l~~   24 (24)
T PF13516_consen    1 NPNLETLDLSNNQ-ITDEGASALAN   24 (24)
T ss_dssp             -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred             CCCCCEEEccCCc-CCHHHHHHhCC
Confidence            6889999999975 89999998874

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.62  E-value=0.00068  Score=64.52  Aligned_cols=94  Identities=16%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEe---ecccCCCCCC--------------CCChHHHHHH---HhcC
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR---NMHPLDTADK--------------LSQDDEANAI---ASTM   71 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L---~~~~~~~~g~--------------~v~d~~~~~i---a~~~   71 (206)
                      .++.|++|.|++|..-+.+|+..|-..+.+|..-+-   -.+.+...|-              ...-..+.++   .+-+
T Consensus       107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll  186 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLL  186 (1096)
T ss_pred             cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHH
Confidence            477899999999976677888766543322211110   0000000000              0000111111   1122


Q ss_pred             CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      |.|++|||+.|++++-.   .++.|++|++|||+.+.
T Consensus       187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~  220 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC  220 (1096)
T ss_pred             HHhhhhccchhhhhhhH---HHHhcccccccccccch
Confidence            77788888888877655   45678888888886544

>PLN03150 hypothetical protein; Provisional

Probab=96.57  E-value=0.004  Score=59.03  Aligned_cols=85  Identities=15%  Similarity=0.186  Sum_probs=48.3

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616           15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS   94 (206)
Q Consensus        15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~   94 (206)
                      .++.|+|++|. ++..--..+ ..+++|+.|.|+.+.+.  |. +.    ..+ ..+++|+.|+|++|.++... -..+.
T Consensus       419 ~v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N~l~--g~-iP----~~~-~~l~~L~~LdLs~N~lsg~i-P~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGNSIR--GN-IP----PSL-GSITSLEVLDLSYNSFNGSI-PESLG  487 (623)
T ss_pred             EEEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCCccc--Cc-CC----hHH-hCCCCCCEEECCCCCCCCCC-chHHh
Confidence            36777777763 332222223 34677888887655331  10 11    112 36778888888887765432 22344


Q ss_pred             CCCCccEEeeeCCCCC
Q 028616           95 SCALLEFLDLRGCWDV  110 (206)
Q Consensus        95 ~c~~Le~LdL~~C~~v  110 (206)
                      ++++|+.|+|++|...
T Consensus       488 ~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        488 QLTSLRILNLNGNSLS  503 (623)
T ss_pred             cCCCCCEEECcCCccc
Confidence            6778888888777543

>PLN03150 hypothetical protein; Provisional

Probab=96.43  E-value=0.0055  Score=58.07  Aligned_cols=88  Identities=13%  Similarity=0.102  Sum_probs=38.1

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++. .+......+++|+.|+|+.+.+.  |. +.    ..+. ++++|++|+|++|.++...=..
T Consensus       440 ~L~~L~~L~Ls~N~-l~g-~iP~~~~~l~~L~~LdLs~N~ls--g~-iP----~~l~-~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        440 KLRHLQSINLSGNS-IRG-NIPPSLGSITSLEVLDLSYNSFN--GS-IP----ESLG-QLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             CCCCCCEEECCCCc-ccC-cCChHHhCCCCCCEEECCCCCCC--CC-Cc----hHHh-cCCCCCEEECcCCcccccCChH
Confidence            45566666666553 221 11112234556666666544321  10 00    1122 5566666666666544322122


Q ss_pred             HHhCCCCccEEeeeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~  109 (206)
                      +.....++..+++.++..
T Consensus       510 l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        510 LGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             HhhccccCceEEecCCcc
Confidence            222233445555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.37  E-value=0.0013  Score=53.72  Aligned_cols=91  Identities=18%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ..+.+.|..|.|++| .||.-. ..|.+..|+|+.|.|.++++.      .-..+.-+| .||+|+.|.+-+|.++...=
T Consensus        60 lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~------~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~  130 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQ------ELGDLDPLA-SCPKLEYLTLLGNPVEHKKN  130 (233)
T ss_pred             CCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchh------hhhhcchhc-cCCccceeeecCCchhcccC
Confidence            346889999999886 576433 246666799999999766441      122344455 89999999999999887652


Q ss_pred             --HHHHhCCCCccEEeeeCCCC
Q 028616           90 --LKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        90 --~~il~~c~~Le~LdL~~C~~  109 (206)
                        ..++-.+|+|+.||+.+-..
T Consensus       131 YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  131 YRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             ceeEEEEecCcceEeehhhhhH
Confidence              34566789999999987443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0017  Score=55.74  Aligned_cols=85  Identities=24%  Similarity=0.322  Sum_probs=60.6

Q ss_pred             HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCH
Q 028616            8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-IST   86 (206)
Q Consensus         8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~   86 (206)
                      .|.++.|.|++|.||-| +|+  .+..+ +.|++|+.|-|..+.|.      .-+.+..+ +++|+|+.|=|.-|. ...
T Consensus        35 sic~kMp~lEVLsLSvN-kIs--sL~pl-~rCtrLkElYLRkN~I~------sldEL~YL-knlpsLr~LWL~ENPCc~~  103 (388)
T KOG2123|consen   35 SICEKMPLLEVLSLSVN-KIS--SLAPL-QRCTRLKELYLRKNCIE------SLDELEYL-KNLPSLRTLWLDENPCCGE  103 (388)
T ss_pred             HHHHhcccceeEEeecc-ccc--cchhH-HHHHHHHHHHHHhcccc------cHHHHHHH-hcCchhhhHhhccCCcccc
Confidence            46788999999999986 565  55555 46899999988655321      23444444 599999999998876 222


Q ss_pred             ---HHHHHHHhCCCCccEEe
Q 028616           87 ---EIVLKILSSCALLEFLD  103 (206)
Q Consensus        87 ---~~l~~il~~c~~Le~Ld  103 (206)
                         .-=..++.-+|+|++||
T Consensus       104 ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  104 AGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cchhHHHHHHHHcccchhcc
Confidence               22356788899999985

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.07  E-value=0.00064  Score=63.97  Aligned_cols=57  Identities=21%  Similarity=0.152  Sum_probs=40.4

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      ++++|++|||++|+||.-.+.  ..-..+|+.|+|+.+..+.+.+..  .+.++|++|...
T Consensus       243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~av--cKL~kL~kLy~n  299 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDAV--CKLTKLTKLYAN  299 (1255)
T ss_pred             hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHHH--hhhHHHHHHHhc
Confidence            558999999999998875432  234689999999998877555433  345666666553

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.88  E-value=0.01  Score=32.81  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=20.3

Q ss_pred             CCCcEEEccCCcCCHHHHHHHHhCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKILSSC   96 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~il~~c   96 (206)
                      ++|++|+|++|.|++.|+.++.+.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            5788888888888888888887654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.85  E-value=0.0065  Score=37.29  Aligned_cols=16  Identities=31%  Similarity=0.619  Sum_probs=10.0

Q ss_pred             cCCCCcEEEccCCcCC
Q 028616           70 TMPKLKRLEMAYHVIS   85 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it   85 (206)
                      +||+|+.|+|++|+|+
T Consensus        22 ~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen   22 NLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TCTTSSEEEETSSCCS
T ss_pred             CCCCCCEEEecCCCCC
Confidence            5666666666666655

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.78  E-value=0.0072  Score=52.52  Aligned_cols=54  Identities=30%  Similarity=0.292  Sum_probs=37.3

Q ss_pred             CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .|+++.|++++|.|+..+=   ++.+++|..|||+++.....  .....+.-++|+|.+
T Consensus       306 ~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLKL  359 (490)
T ss_pred             ccceeEEeccccceeeehh---hhhcccceEeecccchhHhh--hhhHhhhcCEeeeeh
Confidence            3999999999998765433   55789999999998775522  223344455555555

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=95.75  E-value=0.016  Score=53.62  Aligned_cols=96  Identities=26%  Similarity=0.294  Sum_probs=60.8

Q ss_pred             HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC--cCCHHHHHHHHhCCCCccEEeeeCC
Q 028616           30 PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGC  107 (206)
Q Consensus        30 ~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~--~it~~~l~~il~~c~~Le~LdL~~C  107 (206)
                      .++.++....|.+.+|+|+.+++      -.-+++..|+...|+|+.|+|++|  .+....=..=+ +...|+.|-+.|+
T Consensus       208 ~~L~~~~~n~p~i~sl~lsnNrL------~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GN  280 (585)
T KOG3763|consen  208 AVLKHIEENFPEILSLSLSNNRL------YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGN  280 (585)
T ss_pred             HHHHHhhcCCcceeeeecccchh------hchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCC
Confidence            45567777778888888876643      234566667778888888888888  33333221111 4567888888887


Q ss_pred             CCCC-CChH-----HHHhcCCCCceeCCCCc
Q 028616          108 WDVK-LDDK-----FMKGNFPNLKVLGPFVM  132 (206)
Q Consensus       108 ~~v~-~~~~-----~l~~~~~~L~~L~~~~~  132 (206)
                      +..+ ..+.     .+++.||+|..|.....
T Consensus       281 Plc~tf~~~s~yv~~i~~~FPKL~~LDG~ev  311 (585)
T KOG3763|consen  281 PLCTTFSDRSEYVSAIRELFPKLLRLDGVEV  311 (585)
T ss_pred             ccccchhhhHHHHHHHHHhcchheeecCccc
Confidence            6552 1111     24578888888887543

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.51  E-value=0.02  Score=31.59  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=19.8

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcC
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHC   39 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c   39 (206)
                      ++|++|+|++| .|++.|..+|++..
T Consensus         2 ~~L~~LdL~~N-~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNN-KLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCC-CCCHHHHHHHHHHh
Confidence            67888999887 47888888887654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.45  E-value=0.011  Score=51.45  Aligned_cols=35  Identities=17%  Similarity=-0.055  Sum_probs=23.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      -.|.+++|+||+|.-.+-..+.    +.++|+.|.|+.+
T Consensus       305 L~Pkir~L~lS~N~i~~v~nLa----~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTVQNLA----ELPQLQLLDLSGN  339 (490)
T ss_pred             hccceeEEeccccceeeehhhh----hcccceEeecccc
Confidence            3788899999987533333333    3488888888755

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=95.39  E-value=0.034  Score=48.58  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCCCcEEEc
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEM   79 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~Lk~L~L   79 (206)
                      ++.+..+-..=|+|+..+|++...|+...+..+....++=+....-    ..+++..++..+.++|   +.++.|+.|++
T Consensus       187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~F----sla~tr~~d~vA~a~a~ml~~n~sl~slnv  262 (353)
T KOG3735|consen  187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKF----SLANTRSSDPVAFAIAEMLKENKSLTSLNV  262 (353)
T ss_pred             HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhh----hhhcccCCchhHHHHHHHHhhcchhhheec
Confidence            4556667777899999999998889988888777666554444321    1122334455555554   56799999999


Q ss_pred             cCCcCCHHHHHHHHhCCCCccEE
Q 028616           80 AYHVISTEIVLKILSSCALLEFL  102 (206)
Q Consensus        80 ~~~~it~~~l~~il~~c~~Le~L  102 (206)
                      .+|.||..++.+++..++.=++|
T Consensus       263 esnFItg~gi~a~~~al~~n~tl  285 (353)
T KOG3735|consen  263 ESNFITGLGIMALLRALQSNKSL  285 (353)
T ss_pred             cccccccHHHHHHHHHHhccchh
Confidence            99999999999999887655555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.25  E-value=0.0084  Score=58.20  Aligned_cols=33  Identities=12%  Similarity=-0.111  Sum_probs=17.6

Q ss_pred             CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      ++|+.|+|++|+|+.-     -...++|+.|+|++|..
T Consensus       282 ~~L~~L~Ls~N~Lt~L-----P~~p~~L~~LdLS~N~L  314 (788)
T PRK15387        282 SGLCKLWIFGNQLTSL-----PVLPPGLQELSVSDNQL  314 (788)
T ss_pred             hhcCEEECcCCccccc-----cccccccceeECCCCcc
Confidence            4555566666554421     11235677777766643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.20  E-value=0.012  Score=57.86  Aligned_cols=36  Identities=19%  Similarity=-0.060  Sum_probs=15.1

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEee
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   48 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   48 (206)
                      ||.|++|-+..+..--...-..+.++.|.|+.|.|+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs  579 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS  579 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECC
Confidence            555555555554210011111223344555555555

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=95.06  E-value=0.035  Score=51.41  Aligned_cols=92  Identities=20%  Similarity=0.138  Sum_probs=69.4

Q ss_pred             HHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCC-ChHHHHHHHhcCCCCcEEEccCCc
Q 028616            5 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS-QDDEANAIASTMPKLKRLEMAYHV   83 (206)
Q Consensus         5 ~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v-~d~~~~~ia~~~p~Lk~L~L~~~~   83 (206)
                      .+..+..+.|.+..|+|++|....-.++.+|++..|+|+.|+|+.+..     .+ +...+..+  +...|++|-|.||.
T Consensus       209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~-----~~~~~~el~K~--k~l~Leel~l~GNP  281 (585)
T KOG3763|consen  209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHS-----KISSESELDKL--KGLPLEELVLEGNP  281 (585)
T ss_pred             HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchh-----hhcchhhhhhh--cCCCHHHeeecCCc
Confidence            345667789999999999998777889999999999999999985511     11 12222222  56789999999997


Q ss_pred             CCH------HHHHHHHhCCCCccEEe
Q 028616           84 IST------EIVLKILSSCALLEFLD  103 (206)
Q Consensus        84 it~------~~l~~il~~c~~Le~Ld  103 (206)
                      |..      .-+.+|.+.+|+|..||
T Consensus       282 lc~tf~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  282 LCTTFSDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             cccchhhhHHHHHHHHHhcchheeec
Confidence            433      33678888999999885

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.96  E-value=0.0059  Score=47.42  Aligned_cols=95  Identities=23%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             HHHHHHhcC---CCCcEEEeccCCCC-CHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616            5 IVAQIAGRL---SAVTFLDLSYCSKI-GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA   80 (206)
Q Consensus         5 ~l~~l~~~~---~~L~~L~Ls~c~~i-t~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~   80 (206)
                      ++..+.++|   ..+..|+|+.|... -..++..+.+ -..|+...|+.+.+.    .+    ...+...+|.++.|||+
T Consensus        15 gV~evVercedakE~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~N~fk----~f----p~kft~kf~t~t~lNl~   85 (177)
T KOG4579|consen   15 GVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSDNGFK----KF----PKKFTIKFPTATTLNLA   85 (177)
T ss_pred             hHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhC-CceEEEEecccchhh----hC----CHHHhhccchhhhhhcc
Confidence            444555554   35778888888543 2344444433 356777777654331    11    11344466778888888


Q ss_pred             CCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           81 YHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        81 ~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      .|.|++--..  +..+|.|+.|+++.+...
T Consensus        86 ~neisdvPeE--~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   86 NNEISDVPEE--LAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hhhhhhchHH--HhhhHHhhhcccccCccc
Confidence            8877776655  457888888888887755

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.73  E-value=0.0022  Score=51.66  Aligned_cols=78  Identities=29%  Similarity=0.342  Sum_probs=47.8

Q ss_pred             CCCCcEEEeccCCCCCH--HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHHH
Q 028616           13 LSAVTFLDLSYCSKIGA--PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEI   88 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~--~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~   88 (206)
                      ..+++.|.||++ ++|-  -++..    .++|+.|+++++.+        .+-...|. ++|+||+|+++-|+  +...|
T Consensus        32 ~s~ITrLtLSHN-Kl~~vppnia~----l~nlevln~~nnqi--------e~lp~~is-sl~klr~lnvgmnrl~~lprg   97 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVVPPNIAE----LKNLEVLNLSNNQI--------EELPTSIS-SLPKLRILNVGMNRLNILPRG   97 (264)
T ss_pred             hhhhhhhhcccC-ceeecCCcHHH----hhhhhhhhcccchh--------hhcChhhh-hchhhhheecchhhhhcCccc
Confidence            456677777775 4442  22222    36788888865422        11122233 78899999998776  44444


Q ss_pred             HHHHHhCCCCccEEeeeCCC
Q 028616           89 VLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        89 l~~il~~c~~Le~LdL~~C~  108 (206)
                      +    -++|-|+.|||+.+.
T Consensus        98 f----gs~p~levldltynn  113 (264)
T KOG0617|consen   98 F----GSFPALEVLDLTYNN  113 (264)
T ss_pred             c----CCCchhhhhhccccc
Confidence            4    357888999887754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.58  E-value=0.0078  Score=55.34  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=40.8

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCC----ceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcEEEccCCcCC
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLL----VVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHVIS   85 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L----~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~L~L~~~~it   85 (206)
                      +++|+.|++++|+ +++.++..+....+..    +.|.+..       +.++..++..|+..   .+.|+.++++-|.+.
T Consensus       114 ~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~-------c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  114 LPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVS-------CSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             cccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhc-------ccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence            5555666666653 4555555555444332    2222221       23344444443322   344555555555544


Q ss_pred             HHHHHHHHhCC-------CCccEEeeeCCCCC
Q 028616           86 TEIVLKILSSC-------ALLEFLDLRGCWDV  110 (206)
Q Consensus        86 ~~~l~~il~~c-------~~Le~LdL~~C~~v  110 (206)
                      ..++..+.+..       .+++.|.+++|...
T Consensus       186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  186 ELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             hhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            44444333332       23555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.17  E-value=0.0052  Score=58.73  Aligned_cols=96  Identities=21%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCC------CCC-----CCChHHHHHH--HhcCCCCcEE
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT------ADK-----LSQDDEANAI--ASTMPKLKRL   77 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~------~g~-----~v~d~~~~~i--a~~~p~Lk~L   77 (206)
                      +-+|.|++|||++| +++.-.   ..+.|++|+.|.|+.+.+..      .|+     .++...+..+  ..++.+|++|
T Consensus       184 qll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L  259 (1096)
T KOG1859|consen  184 QLLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL  259 (1096)
T ss_pred             HHHHHhhhhccchh-hhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence            34788999999996 555433   33567889999997655321      111     1222222222  1367888888


Q ss_pred             EccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           78 EMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        78 ~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      +|++|-|..-.-...+-.+..|+.|.|.|++.-
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            888887777666666666777888888877643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.08  E-value=0.037  Score=54.60  Aligned_cols=42  Identities=21%  Similarity=0.061  Sum_probs=27.0

Q ss_pred             HHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616            9 IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   52 (206)
Q Consensus         9 l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   52 (206)
                      +..++|.|++|+|++|..++  -++.-...+-+||.|+++...+
T Consensus       566 ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I  607 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGI  607 (889)
T ss_pred             HHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCc
Confidence            35579999999999986654  2222222235688887765543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=94.03  E-value=0.025  Score=50.67  Aligned_cols=87  Identities=22%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             HhcCCCCcEEEeccCCCCC---HHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616           10 AGRLSAVTFLDLSYCSKIG---APALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST   86 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it---~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~   86 (206)
                      ..++|+|+.|+|++| +||   +.+++..    ..|+.|.|..+.+.    .|.    ..+...+.+|+.|+|.+|+||.
T Consensus       270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~----a~l~eL~L~~N~l~----~v~----~~~f~~ls~L~tL~L~~N~it~  336 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNN-KITRIEDGAFEGA----AELQELYLTRNKLE----FVS----SGMFQGLSGLKTLSLYDNQITT  336 (498)
T ss_pred             HhhcccceEeccCCC-ccchhhhhhhcch----hhhhhhhcCcchHH----HHH----HHhhhccccceeeeecCCeeEE
Confidence            456788888888876 344   3444444    34777766544321    111    1123467888889999888776


Q ss_pred             HHHHHHHhCCCCccEEeeeCCCCC
Q 028616           87 EIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        87 ~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      -+=.+ .+....|..|.|-.++..
T Consensus       337 ~~~~a-F~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  337 VAPGA-FQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             Eeccc-ccccceeeeeehccCccc
Confidence            53322 234567777777666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.95  E-value=0.0042  Score=50.04  Aligned_cols=91  Identities=21%  Similarity=0.268  Sum_probs=56.5

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHH---
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI---   88 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~---   88 (206)
                      .+.+|+.|+++++ .|+.  +..-....|+||.|+++++++..-     ..|    ..++|-|+.|+|.+|+++...   
T Consensus        54 ~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~l-----prg----fgs~p~levldltynnl~e~~lpg  121 (264)
T KOG0617|consen   54 ELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNIL-----PRG----FGSFPALEVLDLTYNNLNENSLPG  121 (264)
T ss_pred             Hhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcC-----ccc----cCCCchhhhhhccccccccccCCc
Confidence            4789999999986 4543  222334468899999988765321     111    125577777777766544432   


Q ss_pred             -------HHHH-------------HhCCCCccEEeeeCCCCCCCCh
Q 028616           89 -------VLKI-------------LSSCALLEFLDLRGCWDVKLDD  114 (206)
Q Consensus        89 -------l~~i-------------l~~c~~Le~LdL~~C~~v~~~~  114 (206)
                             +.++             +..+++|+.|.++.+..+.+..
T Consensus       122 nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk  167 (264)
T KOG0617|consen  122 NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK  167 (264)
T ss_pred             chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence                   2222             2236788999999888775443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.78  E-value=0.074  Score=47.98  Aligned_cols=97  Identities=21%  Similarity=0.216  Sum_probs=60.1

Q ss_pred             HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCC----------------CCCChHHHHHHHhcC
Q 028616            8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD----------------KLSQDDEANAIASTM   71 (206)
Q Consensus         8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g----------------~~v~d~~~~~ia~~~   71 (206)
                      .+.+.+++|..|+|+++. +.+--.+ ++ ....|+.|+++.+++..--                ..+..-.+.-+ ..|
T Consensus       429 ~~l~~l~kLt~L~L~NN~-Ln~LP~e-~~-~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l-~nm  504 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNL-LNDLPEE-MG-SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGL-KNM  504 (565)
T ss_pred             HHHHhhhcceeeecccch-hhhcchh-hh-hhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHh-hhh
Confidence            455678999999999873 3322211 11 1245999999876553210                01111111112 367


Q ss_pred             CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      .+|+.|+|..|.+-  .+-.++.+|.+|++|+|.|+..-
T Consensus       505 ~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence            89999999888642  24456789999999999998765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.39  E-value=0.025  Score=50.76  Aligned_cols=87  Identities=25%  Similarity=0.277  Sum_probs=45.5

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|++|+|+++.-.+-.++..+    +.|+.|.+..+.+...         ..+ ..+++|+.+++++|+++.-.-..
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~l~~l----~~L~~L~l~~N~i~~~---------~~~-~~l~~L~~l~l~~n~i~~ie~~~  181 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEGLSTL----TLLKELNLSGNLISDI---------SGL-ESLKSLKLLDLSYNRIVDIENDE  181 (414)
T ss_pred             hhhcchheeccccccccccchhhc----cchhhheeccCcchhc---------cCC-ccchhhhcccCCcchhhhhhhhh
Confidence            456666666666432222333333    3366665554433110         000 12677777777777765544322


Q ss_pred             HHhCCCCccEEeeeCCCCCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLD  113 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~  113 (206)
                       +..++.|+.|.+.++......
T Consensus       182 -~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  182 -LSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             -hhhccchHHHhccCCchhccc
Confidence             466777777777776655333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=93.32  E-value=0.012  Score=55.67  Aligned_cols=16  Identities=25%  Similarity=0.370  Sum_probs=9.6

Q ss_pred             hcCCCCceEEeecccC
Q 028616           37 KHCKLLVVLCRNMHPL   52 (206)
Q Consensus        37 ~~c~~L~~L~L~~~~~   52 (206)
                      +.+.+|+.|.|+.+++
T Consensus       170 RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             HHHhhhhhhhcCCChh
Confidence            3445667777766554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.23  E-value=0.029  Score=51.66  Aligned_cols=52  Identities=23%  Similarity=0.257  Sum_probs=29.8

Q ss_pred             CChHHHHHHHhcC----CCCcEEEccCCcCCHHHHH---HHHhCCCCccEEeeeCCCCC
Q 028616           59 SQDDEANAIASTM----PKLKRLEMAYHVISTEIVL---KILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        59 v~d~~~~~ia~~~----p~Lk~L~L~~~~it~~~l~---~il~~c~~Le~LdL~~C~~v  110 (206)
                      +.+.++..+...+    ++|+++.++.|.|+..+..   ..+..|++++.|.++.+...
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3445555555443    3446777777766665543   44455667777766665544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.68  E-value=0.028  Score=50.46  Aligned_cols=87  Identities=25%  Similarity=0.267  Sum_probs=49.4

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|++..+. |.  .+..+..+|++|+.|.|+.+.|.       .  ...+. .++.|+.|++++|.|+...-  
T Consensus        93 ~~~~l~~l~l~~n~-i~--~i~~~l~~~~~L~~L~ls~N~I~-------~--i~~l~-~l~~L~~L~l~~N~i~~~~~--  157 (414)
T KOG0531|consen   93 KLKSLEALDLYDNK-IE--KIENLLSSLVNLQVLDLSFNKIT-------K--LEGLS-TLTLLKELNLSGNLISDISG--  157 (414)
T ss_pred             cccceeeeeccccc-hh--hcccchhhhhcchheeccccccc-------c--ccchh-hccchhhheeccCcchhccC--
Confidence            46677777776652 32  33332345677777777755431       1  11122 44557778888777665432  


Q ss_pred             HHhCCCCccEEeeeCCCCCCCCh
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDD  114 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~  114 (206)
                       +..++.|+.|+++++.......
T Consensus       158 -~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  158 -LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             -CccchhhhcccCCcchhhhhhh
Confidence             1236777777777777653333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=92.64  E-value=0.09  Score=51.20  Aligned_cols=12  Identities=25%  Similarity=-0.139  Sum_probs=6.5

Q ss_pred             CCccEEeeeCCC
Q 028616           97 ALLEFLDLRGCW  108 (206)
Q Consensus        97 ~~Le~LdL~~C~  108 (206)
                      ++|+.|+|++|.
T Consensus       282 ~~L~~L~Ls~N~  293 (788)
T PRK15387        282 SGLCKLWIFGNQ  293 (788)
T ss_pred             hhcCEEECcCCc
Confidence            445555665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.17  E-value=0.056  Score=42.06  Aligned_cols=90  Identities=18%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      .+..+|+.++|++|..  .+--+.+....|.++.|+|..+.+       ++- -..+| ++|.||.||++.|.+... .+
T Consensus        50 ~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~nei-------sdv-PeE~A-am~aLr~lNl~~N~l~~~-p~  117 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEI-------SDV-PEELA-AMPALRSLNLRFNPLNAE-PR  117 (177)
T ss_pred             hCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhh-------hhc-hHHHh-hhHHhhhcccccCccccc-hH
Confidence            3567788888888631  122235555567889998875533       221 12244 889999999999986554 34


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLD  113 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~  113 (206)
                      .|+. +.+|-.|+..+.-...++
T Consensus       118 vi~~-L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  118 VIAP-LIKLDMLDSPENARAEID  139 (177)
T ss_pred             HHHH-HHhHHHhcCCCCccccCc
Confidence            4444 777888877766554333

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.83  E-value=0.18  Score=24.48  Aligned_cols=12  Identities=17%  Similarity=0.515  Sum_probs=4.9

Q ss_pred             CCcEEEccCCcC
Q 028616           73 KLKRLEMAYHVI   84 (206)
Q Consensus        73 ~Lk~L~L~~~~i   84 (206)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555544

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=88.68  E-value=0.26  Score=43.52  Aligned_cols=60  Identities=25%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616           15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST   86 (206)
Q Consensus        15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~   86 (206)
                      +|+.|+++.+. +.  .+..-...+++|+.|.++.+.+       .+  +.......++|+.|.+++|+++.
T Consensus       141 nL~~L~l~~N~-i~--~l~~~~~~l~~L~~L~l~~N~l-------~~--l~~~~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         141 NLKELDLSDNK-IE--SLPSPLRNLPNLKNLDLSFNDL-------SD--LPKLLSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             hcccccccccc-hh--hhhhhhhccccccccccCCchh-------hh--hhhhhhhhhhhhheeccCCcccc
Confidence            56666666642 22  1212234456777776654422       11  11111145666777777666443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=88.21  E-value=0.36  Score=26.13  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=18.4

Q ss_pred             CCcEEEccCCcCCHH-HHHHHHhCCC
Q 028616           73 KLKRLEMAYHVISTE-IVLKILSSCA   97 (206)
Q Consensus        73 ~Lk~L~L~~~~it~~-~l~~il~~c~   97 (206)
                      +||.|.|....++++ .+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            477888887776555 6788888886

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=87.44  E-value=0.77  Score=44.72  Aligned_cols=33  Identities=18%  Similarity=0.142  Sum_probs=17.2

Q ss_pred             CCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           73 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        73 ~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      +|+.|+|++|+|+.  +-.  .-+++|+.|+|++|..
T Consensus       263 ~L~~L~Ls~N~L~~--LP~--~l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        263 ALQSLDLFHNKISC--LPE--NLPEELRYLSVYDNSI  295 (754)
T ss_pred             CCCEEECcCCccCc--ccc--ccCCCCcEEECCCCcc
Confidence            56666666665542  110  1124666666666643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=87.05  E-value=0.4  Score=43.22  Aligned_cols=86  Identities=14%  Similarity=0.024  Sum_probs=51.9

Q ss_pred             HhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChH
Q 028616           36 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK  115 (206)
Q Consensus        36 ~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~  115 (206)
                      .+..|+|++|+|+++.+.    .|.+ ++.   +...+|+.|.|..|+|..-. ..+.++..+|+.|+|.++.-.++...
T Consensus       270 f~~L~~L~~lnlsnN~i~----~i~~-~aF---e~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKIT----RIED-GAF---EGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             HhhcccceEeccCCCccc----hhhh-hhh---cchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecc
Confidence            345688888888766442    1112 111   24567788888888754332 23456889999999999876644444


Q ss_pred             HHHhcCCCCceeCCCC
Q 028616          116 FMKGNFPNLKVLGPFV  131 (206)
Q Consensus       116 ~l~~~~~~L~~L~~~~  131 (206)
                      ++ +....|..|++..
T Consensus       341 aF-~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  341 AF-QTLFSLSTLNLLS  355 (498)
T ss_pred             cc-cccceeeeeehcc
Confidence            33 2334466666544

>PRK15386 type III secretion protein GogB; Provisional

Probab=85.80  E-value=0.51  Score=42.79  Aligned_cols=71  Identities=18%  Similarity=0.137  Sum_probs=41.0

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVL   90 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l~   90 (206)
                      .|++|+.|+|++| .++  .+   .+.-++|+.|.++.+.- .  ..+..    .+   .++|++|.|++|. ++.    
T Consensus        50 ~~~~l~~L~Is~c-~L~--sL---P~LP~sLtsL~Lsnc~n-L--tsLP~----~L---P~nLe~L~Ls~Cs~L~s----  109 (426)
T PRK15386         50 EARASGRLYIKDC-DIE--SL---PVLPNELTEITIENCNN-L--TTLPG----SI---PEGLEKLTVCHCPEISG----  109 (426)
T ss_pred             HhcCCCEEEeCCC-CCc--cc---CCCCCCCcEEEccCCCC-c--ccCCc----hh---hhhhhheEccCcccccc----
Confidence            4899999999998 344  22   23345799998864311 0  00111    11   2578888888883 531    


Q ss_pred             HHHhCCCCccEEeeeC
Q 028616           91 KILSSCALLEFLDLRG  106 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~  106 (206)
                       +   -++|+.|+|.+
T Consensus       110 -L---P~sLe~L~L~~  121 (426)
T PRK15386        110 -L---PESVRSLEIKG  121 (426)
T ss_pred             -c---ccccceEEeCC
Confidence             1   24566666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=83.81  E-value=0.54  Score=24.12  Aligned_cols=12  Identities=17%  Similarity=0.371  Sum_probs=5.8

Q ss_pred             CcEEEccCCcCC
Q 028616           74 LKRLEMAYHVIS   85 (206)
Q Consensus        74 Lk~L~L~~~~it   85 (206)
                      |++|+|++|.|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=83.23  E-value=1.9  Score=42.04  Aligned_cols=34  Identities=18%  Similarity=0.115  Sum_probs=18.0

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   52 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   52 (206)
                      ++|+.|++++|. ++.  +..  ..+++|+.|.++.+.+
T Consensus       325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L  358 (754)
T PRK15370        325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQI  358 (754)
T ss_pred             ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCC
Confidence            567777777763 331  111  1235677777765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 65.7 bits (160), Expect = 4e-13
 Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           +SD IV  +A + S +  L+LS CS     AL+ +   C  L  L      L      ++
Sbjct: 130 LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN-----LSWCFDFTE 183

Query: 61  DDEANAIASTMPKLKRLEMA--YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 118
                A+A     + +L ++     +    +  ++  C  L  LDL     V L +   +
Sbjct: 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLKNDCFQ 241

Query: 119 --GNFPNLKVL 127
                  L+ L
Sbjct: 242 EFFQLNYLQHL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 10/129 (7%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE-AIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           S+  +  +    S +  L+LS+C       ++ A+    + +  L      L    K  Q
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN-----LSGYRKNLQ 210

Query: 61  DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK-- 118
             + + +    P L  L+++  V+      +       L+ L L  C+   +  + +   
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPETLLEL 268

Query: 119 GNFPNLKVL 127
           G  P LK L
Sbjct: 269 GEIPTLKTL 277

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 16/111 (14%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSK-IGAPALEAIGKHCKLLVVL----CRNMHPLDTAD 56
              +   +A     +T L+LS   K +    L  + + C  LV L       +       
Sbjct: 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML------- 235

Query: 57  KLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 107
                ++       +  L+ L ++         L  L     L+ L + G 
Sbjct: 236 ----KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           + D ++  I   L     L +S   K     L +     + L +  +N+HP  T   LSQ
Sbjct: 12  LPDELLLGIFSCLCLPELLKVSGVCK-RWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQ 70

Query: 61  D-----------DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109
                       D+  A   +  +++ ++++  VI    +  ILS C+ L+ L L G   
Sbjct: 71  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-- 128

Query: 110 VKLDDKFMK--GNFPNLKVL 127
            +L D  +       NL  L
Sbjct: 129 -RLSDPIVNTLAKNSNLVRL 147

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 17/128 (13%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 3   DSIVAQIAGRLSAVTFLDLSY-CSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD 61
           D+ V  +      +           +    L  IG++   +  +               D
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-------D 477

Query: 62  DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KG 119
           +     +   P L++LEM     S   +   ++    L +L ++G          M    
Sbjct: 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMAR 537

Query: 120 NFPNLKVL 127
            + N++++
Sbjct: 538 PYWNIELI 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 2   SDSIVAQIA-GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
           SD  + ++A  R   +  L L  CS      L +I  HC+ +  L          D    
Sbjct: 125 SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD---- 180

Query: 61  DDEANAIASTMPKLKRLEMAY---HVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM 117
               + +A     L+ L         IS + +  I  +C  L  + +       L+    
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF--EILELVGF 238

Query: 118 KGNFPNLKVLG 128
                NL+   
Sbjct: 239 FKAAANLEEFC 249

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 22/144 (15%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS-- 59
           S   +  IA    ++  + +     +          + +       N         ++  
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267

Query: 60  -------------QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 106
                          +E   +     ++++L++ Y ++ TE    ++  C  LE L+ R 
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

Query: 107 CWDVKLDDKFMKG---NFPNLKVL 127
                + D+ ++        LK L
Sbjct: 328 V----IGDRGLEVLAQYCKQLKRL 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 22/149 (14%), Positives = 54/149 (36%), Gaps = 25/149 (16%)

Query: 9   IAGRLSAVTFLDLSYCSKIG-------------APALEAIGKHCKLLVVL-CRNMHPLDT 54
           ++ R   +  L L    +                P +  I  + + L  +  R M   D 
Sbjct: 68  LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDL 127

Query: 55  ADKLSQDDEANAIASTMPKLKRLEMAY-HVISTEIVLKILSSCALLEFLDLRGCWDVKLD 113
                         +    L+ L++      +T+ +L I++ C  ++ L +      + D
Sbjct: 128 DLDR-------LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 114 DKFMKG---NFPNLKVLGPFVMDYYEIND 139
            K++     +  +L+VL  ++ ++ +I+ 
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISP 209

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 24/162 (14%), Positives = 47/162 (29%), Gaps = 35/162 (21%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAP-----------------------ALEAIGK 37
           M  + +  +    + +  LDL Y                               LE + +
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 38  HCKLLVVL----CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 93
           +CK L  L      +   ++  + L       A+A    +L+ + +    I+ E +  I 
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 94  SSCALLEFLDLRGCW------DVKLDDKFMKG--NFPNLKVL 127
           +    L    L          D+ LD+           L+  
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 18/115 (15%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ- 60
           +D  ++ I      V ++ L Y        L    + C  L  L            +   
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLE-----------MRGC 498

Query: 61  ---DDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDLRGCWDV 110
              +    A  + +P L+ L +  +  S     ++++      +E +  R   +V
Sbjct: 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 22/133 (16%), Positives = 43/133 (32%), Gaps = 14/133 (10%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQ 60
               V +I+  L  +  +       +    L+ + K     L  L      LD     + 
Sbjct: 100 VTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLK-----LDKCSGFT- 152

Query: 61  DDEANAIASTMPKLKRLEMAY---HVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM 117
            D   +I +   K+K L M          + + ++      LE L+       K+  K +
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 118 KG---NFPNLKVL 127
           +    N  +L  +
Sbjct: 213 ETIARNCRSLVSV 225

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 8e-10
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 11/131 (8%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD 61
           +D  +  IA        L LS C       L AI   C+ L  L      L  +D     
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD-----LRESDVDDVS 172

Query: 62  DEA-NAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFM 117
               +    T   L  L ++     +S   + ++++ C  L+ L L     V L+    +
Sbjct: 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATL 230

Query: 118 KGNFPNLKVLG 128
               P L+ LG
Sbjct: 231 LQRAPQLEELG 241

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 13/133 (9%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADK 57
           ++  +  ++     +  + L +C ++   AL  I ++   +            P     +
Sbjct: 360 TEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418

Query: 58  LSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM 117
              D    AI      L+RL ++   ++ ++   I +    +E L +         D  M
Sbjct: 419 PL-DIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFA---GDSDLGM 473

Query: 118 K---GNFPNLKVL 127
                   +L+ L
Sbjct: 474 HHVLSGCDSLRKL 486

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 22/138 (15%)

Query: 1   MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ 60
              + +  +    S +T L+LSY + + +  L  +   C  L         L   D +  
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQR-------LWVLDYIE- 326

Query: 61  DDEANAIASTMPKLKRLEMAY---------HVISTEIVLKILSSCALLEFLDLRGCWDVK 111
           D     +AST   L+ L +             ++ + ++ +   C  LE + L  C  + 
Sbjct: 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMT 385

Query: 112 LDD--KFMKGNFPNLKVL 127
            +     +  N PN+   
Sbjct: 386 -NAALITIARNRPNMTRF 402

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 18/119 (15%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADK 57
           +D +   I      +  L +++        +  +   C  L  L    C           
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFG-------- 494

Query: 58  LSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL--EFLDLRGCWDVKLDD 114
              D    A AS +  ++ L M+   +S      +      L  E +D RG  D + + 
Sbjct: 495 ---DKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 19/133 (14%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAP----ALEAIGKHCKLLVVL--CRNMHPLDTA 55
               +A +  R   +  L     +    P     L      CK L  L    +       
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV----- 277

Query: 56  DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW-DVKLDD 114
                     A+ S   +L  L ++Y  + +  ++K+L  C  L+ L +     D  L  
Sbjct: 278 -----PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL-- 330

Query: 115 KFMKGNFPNLKVL 127
           + +     +L+ L
Sbjct: 331 EVLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 24/129 (18%)

Query: 2   SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD 61
                A +  R   V  ++L          L   G    +   +                
Sbjct: 54  YAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI---------------- 97

Query: 62  DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--- 118
               A++S+   L+ + +   V++ + +  I  S    + L L  C         +    
Sbjct: 98  ---EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE--GFSTDGLAAIA 152

Query: 119 GNFPNLKVL 127
               NLK L
Sbjct: 153 ATCRNLKEL 161

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 11  GRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVL--CRNMHPLDTADKLSQDDEANAI 67
              +++T LDLS  S  G    L ++G  C  L  L    N         L    + +  
Sbjct: 97  KCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSN--------TLDFPGKVSGG 147

Query: 68  ASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 125
              +  L+ L+++ + IS        +   C  L+ L + G    K+          NL+
Sbjct: 148 LK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLE 203

Query: 126 VL 127
            L
Sbjct: 204 FL 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.52
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.46
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.41
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.4
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.02
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.94
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.73
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.31
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.15
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.1
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.03
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.03
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.03
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.01
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.01
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.98
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.93
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.89
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.85
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.77
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.73
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.72
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.71
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.68
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.67
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.65
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.63
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.56
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.55
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.51
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.47
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.3
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.97
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	96.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.56
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.01
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	93.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	92.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	92.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.46
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.41
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	80.4

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.62  E-value=5.7e-16  Score=122.68  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=88.8

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcEEEccCCc-CCHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHV-ISTEIV   89 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~L~L~~~~-it~~~l   89 (206)
                      .+|+.|+|++|. ||+.|+..+ ..|++|+.|+|+.+.      .|++.++.+|+..   +++|++|+|++|. ||+.|+
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCH------YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCT------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCC------ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            469999999997 999999999 589999999998553      5799999999963   5799999999996 999999


Q ss_pred             HHHHhCCCCccEEeeeCCCCCCCChH---HHHhcCCCCce
Q 028616           90 LKILSSCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKV  126 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~  126 (206)
                      ..+. .||+|++|+|++|..++....   .+++..|+++.
T Consensus       133 ~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          133 IALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             HHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            9886 699999999999999944332   34578888775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.52  E-value=9e-14  Score=120.63  Aligned_cols=113  Identities=16%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHh----cCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCCCcEEEccCCc
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHV   83 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~----~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~Lk~L~L~~~~   83 (206)
                      ..+++|++|+|++| .+++.++.++..    .+++|+.|.|+.+       .+++.++..++   ..+|+|++|+|++|.
T Consensus       184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-------~l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-------TFTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-------CCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-------CCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            36778888888876 477777666555    6778888877655       34555555554   467899999999999


Q ss_pred             CCHHHHHHHHhC-----CCCccEEeeeCCCCCCC----ChHHHHhcCCCCceeCCCC
Q 028616           84 ISTEIVLKILSS-----CALLEFLDLRGCWDVKL----DDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        84 it~~~l~~il~~-----c~~Le~LdL~~C~~v~~----~~~~l~~~~~~L~~L~~~~  131 (206)
                      |+..++..+...     +++|+.|+|++|.....    -...+...+++|+.|.+..
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~  312 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  312 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence            998877766543     78899999998875521    0012235578999988754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=8.5e-14  Score=120.79  Aligned_cols=117  Identities=21%  Similarity=0.173  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHh----cCCCCcEEEeccCCCCCHHHHHHHH---hcCCCCceEEeecccCCCCCCCCChHHHHHHHhc---
Q 028616            1 MSDSIVAQIAG----RLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---   70 (206)
Q Consensus         1 Isd~~l~~l~~----~~~~L~~L~Ls~c~~it~~~l~~l~---~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---   70 (206)
                      |++.++..++.    .+++|+.|+|++|. +++.|+..++   ..+++|+.|.|+.+       .++..++.+++..   
T Consensus       199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-------~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          199 IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-------LLSARGAAAVVDAFSK  270 (386)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-------CCCHHHHHHHHHHHHT
T ss_pred             CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-------CCchhhHHHHHHHHhh
Confidence            45666666655    79999999999985 8887766665   56899999999866       4577777776643   


Q ss_pred             --CCCCcEEEccCCcCCHHHHHHHH----hCCCCccEEeeeCCCCCCCCh--HHHHhcCCCCc
Q 028616           71 --MPKLKRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLK  125 (206)
Q Consensus        71 --~p~Lk~L~L~~~~it~~~l~~il----~~c~~Le~LdL~~C~~v~~~~--~~l~~~~~~L~  125 (206)
                        +++|++|+|++|.|+..++..+.    .+||+|++|+|++|.......  ..+...+++++
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~  333 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG  333 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence              79999999999999997665544    458999999999998764453  34455556555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.46  E-value=5.4e-14  Score=111.29  Aligned_cols=93  Identities=18%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEE
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRL   77 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L   77 (206)
                      |+|.++..+. .|++|++|+|++|..||+.|+.+|++.   |++|+.|+|+.+.      .|++.++.+|+ +||+|++|
T Consensus        73 Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~------~ITD~Gl~~L~-~~~~L~~L  144 (176)
T 3e4g_A           73 IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG------NVTDKGIIALH-HFRNLKYL  144 (176)
T ss_dssp             CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT------TCCHHHHHHGG-GCTTCCEE
T ss_pred             ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC------cCCHHHHHHHh-cCCCCCEE
Confidence            6888998884 899999999999999999999999983   7899999998552      57999999998 79999999


Q ss_pred             EccCCc-CCHHH--HHHHHhCCCCccE
Q 028616           78 EMAYHV-ISTEI--VLKILSSCALLEF  101 (206)
Q Consensus        78 ~L~~~~-it~~~--l~~il~~c~~Le~  101 (206)
                      +|++|. ||+.+  +..+.+..|+++.
T Consensus       145 ~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          145 FLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             EEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             ECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            999997 99987  4566678898874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=1.1e-12  Score=111.12  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC-
Q 028616            4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH-   82 (206)
Q Consensus         4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~-   82 (206)
                      .++..+...|++|++|+|++| .++......+++ |++|+.|.++.+.      .+++.++..+...+|+|++|+|++| 
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~------~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCS------GFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCB------SCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             HHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCC------CCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            334444555555555555554 245555544443 5555555554321      1233333333334444444444444 


Q ss_pred             cCCHHHHHHHHhCCC-CccEEeeeCC
Q 028616           83 VISTEIVLKILSSCA-LLEFLDLRGC  107 (206)
Q Consensus        83 ~it~~~l~~il~~c~-~Le~LdL~~C  107 (206)
                      .++..++..++..|| +|++|+|++|
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCC
Confidence            344444444444444 4444444444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.43  E-value=5.8e-13  Score=120.67  Aligned_cols=117  Identities=24%  Similarity=0.232  Sum_probs=75.1

Q ss_pred             CHHHHHHHHhcCCCCcEEEec-----cCCCCC----HHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCC
Q 028616            2 SDSIVAQIAGRLSAVTFLDLS-----YCSKIG----APALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP   72 (206)
Q Consensus         2 sd~~l~~l~~~~~~L~~L~Ls-----~c~~it----~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p   72 (206)
                      ++.++..++..||+|+.|+|+     +|..++    +.++.++.+.|++|+.|.|+.        .+++.++..++..++
T Consensus       385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--------~l~~~~~~~l~~~~~  456 (594)
T 2p1m_B          385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--------LLTDKVFEYIGTYAK  456 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--------SCCHHHHHHHHHHCT
T ss_pred             CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--------cccHHHHHHHHHhch
Confidence            344445555455555555555     344455    455555555555555555531        356777777776688


Q ss_pred             CCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCC
Q 028616           73 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGP  129 (206)
Q Consensus        73 ~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~  129 (206)
                      +|++|+|++|.+++.++..++.+|++|+.|+|++|...   +..   +...+++|+.|.+
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~---~~~~~~~~~~l~~L~~L~l  513 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG---DKALLANASKLETMRSLWM  513 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC---HHHHHHTGGGGGGSSEEEE
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc---HHHHHHHHHhCCCCCEEee
Confidence            88888888888888888888788888888888888752   222   2355677777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.41  E-value=1.9e-12  Score=117.36  Aligned_cols=127  Identities=20%  Similarity=0.273  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEee----cccCCCC---------------------
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN----MHPLDTA---------------------   55 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~----~~~~~~~---------------------   55 (206)
                      |++.++..++..||+|+.|+| .|..++..++..+++.|++|+.|+++    ++.+...                     
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L  443 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF  443 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred             cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence            345566666666677777766 34456666776776667777777764    1222110                     


Q ss_pred             ---CCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCC
Q 028616           56 ---DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGP  129 (206)
Q Consensus        56 ---g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~  129 (206)
                         ...+++.++..++..+|+|++|+|++|.+++.++..++.+|++|++|+|++|. +  ++..   +...+++|+.|.+
T Consensus       444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l--~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-F--SERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-C--BHHHHHHHHHHCSSCCEEEE
T ss_pred             ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-C--cHHHHHHHHHhcCccCeeEC
Confidence               00257788888888899999999999999999999999999999999999998 4  4432   3467899999887


Q ss_pred             CC
Q 028616          130 FV  131 (206)
Q Consensus       130 ~~  131 (206)
                      ..
T Consensus       521 s~  522 (592)
T 3ogk_B          521 QG  522 (592)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.40  E-value=2e-12  Score=117.20  Aligned_cols=117  Identities=14%  Similarity=0.115  Sum_probs=92.0

Q ss_pred             HHHHHHHhcCCCCcEEEeccCC-CCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 028616            4 SIVAQIAGRLSAVTFLDLSYCS-KIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH   82 (206)
Q Consensus         4 ~~l~~l~~~~~~L~~L~Ls~c~-~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~   82 (206)
                      .++..+...|++|+.|+|++|. .+++.++..+++.|++|+.|.|+.+       .+++.++..++.+|++|++|+|++|
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-------~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-------GESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-------CSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-------CCCHHHHHHHHhcCcccCeeeccCC
Confidence            4666677777777777777654 3778888888888888888888755       4678889999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCcee
Q 028616           83 VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL  127 (206)
Q Consensus        83 ~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L  127 (206)
                      .|++.++..++..|++|++|+|++|......-..+.+.+|.++..
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~  543 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE  543 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence            999999999999999999999999994322222345667766554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.39  E-value=1.6e-12  Score=109.99  Aligned_cols=123  Identities=21%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCC-CCcEEEcc
Q 028616            2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP-KLKRLEMA   80 (206)
Q Consensus         2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p-~Lk~L~L~   80 (206)
                      ++..+..++ .+++|++|+|++|..++..++..+...|++|+.|.++.+.      .+++.++..+...+| +|++|+|+
T Consensus       131 ~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          131 SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------DFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             CHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------TCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             CHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC------CcChHHHHHHHHhcccCCCEEEeC
Confidence            455566665 4889999999988778888888888888999999887541      345666667677888 88888888


Q ss_pred             CC--cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           81 YH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        81 ~~--~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +|  .+++.++..++.+||+|+.|+|++|..++.........+++|+.|.+..
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence            88  5888888888888888888888888765211111225667888877743

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.38  E-value=1.7e-12  Score=117.64  Aligned_cols=117  Identities=20%  Similarity=0.146  Sum_probs=100.0

Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH   82 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~   82 (206)
                      +.++..++..|++|+.|+|++  .+++.++..+++.+++|+.|.|+.+       .+++.++.+++.+||+|++|+|++|
T Consensus       421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-------~i~~~~~~~l~~~~~~L~~L~L~~n  491 (594)
T 2p1m_B          421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-------GDSDLGMHHVLSGCDSLRKLEIRDC  491 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-------CSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred             hhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-------CCcHHHHHHHHhcCCCcCEEECcCC
Confidence            778899999999999999977  6999999999999999999999866       4578999999889999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeC
Q 028616           83 VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  128 (206)
Q Consensus        83 ~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  128 (206)
                      .+++.++..++.+|++|+.|+|++|......-..+...+|+|+...
T Consensus       492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~  537 (594)
T 2p1m_B          492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV  537 (594)
T ss_dssp             SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred             CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence            9999999999999999999999999863111122446678776533

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.28  E-value=3.8e-11  Score=94.82  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=92.1

Q ss_pred             HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcEE
Q 028616            4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRL   77 (206)
Q Consensus         4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~L   77 (206)
                      ..+..+...+++|++|+|++|..+++.|+.++++.   +++|+.|.|+.+       .+++.++.+|+..   .++|++|
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-------~i~~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-------RSNDPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-------CCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-------CCChHHHHHHHHHHHhCCCcCEE
Confidence            45667777899999999999856999998888764   688999999866       5688998888754   4899999


Q ss_pred             EccCCcCCHHHHHHHHh---CCCCccEEee--eCCCCCCCChHH---H---HhcCCCCceeCCC
Q 028616           78 EMAYHVISTEIVLKILS---SCALLEFLDL--RGCWDVKLDDKF---M---KGNFPNLKVLGPF  130 (206)
Q Consensus        78 ~L~~~~it~~~l~~il~---~c~~Le~LdL--~~C~~v~~~~~~---l---~~~~~~L~~L~~~  130 (206)
                      +|++|.|++.++.+++.   .+++|+.|+|  ++|...   +..   +   .+..+.|+.|.+.
T Consensus        99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~---~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A           99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG---NNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC---HHHHHHHHHHHHHCSSCCEEECC
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC---HHHHHHHHHHHHhCCCcCEEecc
Confidence            99999999999887765   4689999999  656533   222   2   2566889998874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.17  E-value=9.4e-11  Score=102.30  Aligned_cols=122  Identities=10%  Similarity=0.049  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHh----cCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCC
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPK   73 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~----~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~   73 (206)
                      |++.++..++..+++|+.|+|++| .+++.++.++++    .+++|+.|+|+.+       .+++.++.+++   ..+++
T Consensus       113 l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-------~l~~~~~~~l~~~L~~~~~  184 (372)
T 3un9_A          113 LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-------PLTAAGVAVLMEGLAGNTS  184 (372)
T ss_dssp             CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-------CCHHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-------CCChHHHHHHHHHHhcCCC
Confidence            345566666666666666666665 466666665553    3456666666544       34555555554   34577


Q ss_pred             CcEEEccCCcCCHHHHHHHH---hCCCCccEEeeeCCCCCCCChHHHH---hcCCCCceeCCC
Q 028616           74 LKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGPF  130 (206)
Q Consensus        74 Lk~L~L~~~~it~~~l~~il---~~c~~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~~  130 (206)
                      |++|+|++|.|++.++..+.   ..+++|+.|+|++|.........+.   ..+++|+.|.+.
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls  247 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY  247 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence            77777777777777655443   4556777777777753311111121   345677777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.17  E-value=2.6e-10  Score=89.93  Aligned_cols=101  Identities=12%  Similarity=0.093  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHh---cCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhcC---
Q 028616            1 MSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---   71 (206)
Q Consensus         1 Isd~~l~~l~~---~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---   71 (206)
                      |++.++..++.   .+++|++|+|++| .|++.|+.+|++.   +++|+.|+|+.+       .+++.++.+|+..+   
T Consensus        49 i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-------~i~~~g~~~l~~~L~~n  120 (185)
T 1io0_A           49 IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-------FISGSGILALVEALQSN  120 (185)
T ss_dssp             CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-------CCCHHHHHHHHHGGGGC
T ss_pred             CCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-------cCCHHHHHHHHHHHHhC
Confidence            46777777765   4789999999998 5999998877654   589999999866       56899999988654   


Q ss_pred             CCCcEEEc--cCCcCCHHHHHHH---HhCCCCccEEeeeCCCC
Q 028616           72 PKLKRLEM--AYHVISTEIVLKI---LSSCALLEFLDLRGCWD  109 (206)
Q Consensus        72 p~Lk~L~L--~~~~it~~~l~~i---l~~c~~Le~LdL~~C~~  109 (206)
                      ++|++|+|  ++|.|++.++.++   ++.+++|+.|+|++|..
T Consensus       121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            79999999  8899999996655   45579999999999864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.08  E-value=1.2e-09  Score=87.74  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=94.6

Q ss_pred             HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhcC---CCCcEE
Q 028616            4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---PKLKRL   77 (206)
Q Consensus         4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---p~Lk~L   77 (206)
                      ..+..+....+.|++|+|+++..|++.|+.+|++.   -..|+.|.|+.+       .+++.++.+||..+   +.|++|
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-------~igd~ga~alA~aL~~N~tL~~L  103 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSPSLRVL  103 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCSSCCEE
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-------CCChHHHHHHHHHHhcCCccCeE
Confidence            46777888899999999998667999998888765   467999999766       56899999998655   899999


Q ss_pred             EccCCcCCHHHHHHHHhCC---CCccEEeeeCCCCCCCChHH---H---HhcCCCCceeCCC
Q 028616           78 EMAYHVISTEIVLKILSSC---ALLEFLDLRGCWDVKLDDKF---M---KGNFPNLKVLGPF  130 (206)
Q Consensus        78 ~L~~~~it~~~l~~il~~c---~~Le~LdL~~C~~v~~~~~~---l---~~~~~~L~~L~~~  130 (206)
                      +|+.|.|++.|+.+|++.+   +.|+.|+|++|....+.+..   +   .+.-+.|+.|++.
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence            9999999999999998776   67999999987541123331   2   2455678887763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.04  E-value=6.7e-10  Score=96.90  Aligned_cols=122  Identities=10%  Similarity=0.063  Sum_probs=89.5

Q ss_pred             CHHHHHHHHhc----CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHh----cCCC
Q 028616            2 SDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPK   73 (206)
Q Consensus         2 sd~~l~~l~~~----~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~----~~p~   73 (206)
                      ++.+...++..    +++|++|+|++| .+++.++..++..+++|+.|.|+.+       .+++.++.+++.    .+++
T Consensus        85 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-------~l~~~~~~~L~~~L~~~~~~  156 (372)
T 3un9_A           85 TPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-------SLGPEACKDLRDLLLHDQCQ  156 (372)
T ss_dssp             CHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-------CCCHHHHHHHHHHHHSTTCC
T ss_pred             CHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-------CCCHHHHHHHHHHHHhcCCc
Confidence            44444444443    468999999987 4889999888888889999988766       457888777764    4588


Q ss_pred             CcEEEccCCcCCHHHHHHHH---hCCCCccEEeeeCCCCCCCChHHH---HhcCCCCceeCCCC
Q 028616           74 LKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCWDVKLDDKFM---KGNFPNLKVLGPFV  131 (206)
Q Consensus        74 Lk~L~L~~~~it~~~l~~il---~~c~~Le~LdL~~C~~v~~~~~~l---~~~~~~L~~L~~~~  131 (206)
                      |++|+|++|.|++.++..++   ..+++|++|+|++|.........+   ...+++|+.|.+..
T Consensus       157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            99999999999998876664   578999999999987431111112   25567888888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.02  E-value=1.5e-09  Score=95.29  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHH---HhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCC----CC
Q 028616            2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP----KL   74 (206)
Q Consensus         2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l---~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p----~L   74 (206)
                      ++..+..+...+|+|++|+|++|. ++..++.++   .+.+++|+.|.|+.+.       +++.++.+++..++    +|
T Consensus        16 ~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-------l~~~~~~~l~~~l~~~~~~L   87 (461)
T 1z7x_W           16 SDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-------LGDVGVHCVLQGLQTPSCKI   87 (461)
T ss_dssp             CHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-------CHHHHHHHHHHTTCSTTCCC
T ss_pred             CchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-------CChHHHHHHHHHHhhCCCce
Confidence            455555556666667777776663 565544333   2345666666665432       23444444444443    45


Q ss_pred             cEEEccCCcCCHHH---HHHHHhCCCCccEEeeeCCC
Q 028616           75 KRLEMAYHVISTEI---VLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        75 k~L~L~~~~it~~~---l~~il~~c~~Le~LdL~~C~  108 (206)
                      ++|+|++|.|++.+   +...+..|++|++|+|++|.
T Consensus        88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence            55555555554432   22223344555555555444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.94  E-value=6.9e-09  Score=91.07  Aligned_cols=94  Identities=16%  Similarity=0.180  Sum_probs=62.7

Q ss_pred             HHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCC----CCceEEeecccCCCCCCCCChHHHHHH---HhcCCCCcEEEc
Q 028616            7 AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK----LLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEM   79 (206)
Q Consensus         7 ~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~----~L~~L~L~~~~~~~~g~~v~d~~~~~i---a~~~p~Lk~L~L   79 (206)
                      ......+++|++|+|++| .+++.++.++++.++    +|+.|.|+.+.+       ++.++..+   ...+++|++|+|
T Consensus        49 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~L  120 (461)
T 1z7x_W           49 SSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHL  120 (461)
T ss_dssp             HHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEEC
T ss_pred             HHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCC-------CHHHHHHHHHHHccCCceeEEEC
Confidence            344456899999999986 488888888888877    799998876533       44333322   235667777777


Q ss_pred             cCCcCCHHHHHHHHhC----CCCccEEeeeCCC
Q 028616           80 AYHVISTEIVLKILSS----CALLEFLDLRGCW  108 (206)
Q Consensus        80 ~~~~it~~~l~~il~~----c~~Le~LdL~~C~  108 (206)
                      ++|.+++.++..+...    .++|++|+|++|.
T Consensus       121 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W          121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence            7777766666555443    3456666666664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.91  E-value=2.2e-09  Score=80.67  Aligned_cols=106  Identities=20%  Similarity=0.189  Sum_probs=62.2

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++..   .....+++|+.|.++.+.+       +.. ...+...+++|++|+|++|.|+......
T Consensus        40 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i-------~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~  107 (149)
T 2je0_A           40 EFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRV-------SGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIE  107 (149)
T ss_dssp             TCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCC-------CSC-THHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred             hcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcc-------cch-HHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence            45666666666652 3322   2223456666666654433       111 2223346788888888888877755445


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP  129 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~  129 (206)
                      .+.++++|+.|++++|........  .....+++|+.|..
T Consensus       108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            566788888888888765433331  23466777877765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.83  E-value=2.4e-09  Score=82.10  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=62.6

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++..   .....+++|+.|.++.+.+..       . ...+...+++|++|+|++|.|+......
T Consensus        47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~-------~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  114 (168)
T 2ell_A           47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFG-------G-LDMLAEKLPNLTHLNLSGNKLKDISTLE  114 (168)
T ss_dssp             GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCS-------C-CCHHHHHCTTCCEEECBSSSCCSSGGGG
T ss_pred             hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCch-------H-HHHHHhhCCCCCEEeccCCccCcchhHH
Confidence            45566666666653 3322   222345666666666553321       0 1223345788888888888777643334


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~  131 (206)
                      .+..+++|+.|+|++|........  .....+++|+.|....
T Consensus       115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A          115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence            456778888888888765533331  2346677888877744

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=7e-09  Score=90.36  Aligned_cols=35  Identities=14%  Similarity=0.010  Sum_probs=22.7

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHh-cCCCCceEEee
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRN   48 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~-~c~~L~~L~L~   48 (206)
                      +++|++|.|..| .++..++.+++. .+|+|+.|.|+
T Consensus       192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence            566777777655 366666666664 46777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.74  E-value=4.4e-08  Score=78.57  Aligned_cols=100  Identities=8%  Similarity=0.092  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHhc---CCCCcEEEeccCCCCCHHHHHHHHh---cCCCCceEEeecccCCCCCCCCChHHHHHHHhcC---
Q 028616            1 MSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---   71 (206)
Q Consensus         1 Isd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---   71 (206)
                      |.+.++..|+..   .+.|+.|+|++| .|++.|..+|++   .-+.|+.|+|+.+       .|++.|+.+|++.+   
T Consensus        54 igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-------~Ig~~Ga~ala~aL~~N  125 (197)
T 1pgv_A           54 VSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-------FLTPELLARLLRSTLVT  125 (197)
T ss_dssp             SCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-------BCCHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-------cCCHHHHHHHHHHHhhC
Confidence            467777777664   779999999997 599999887774   4588999999876       56899999999877   


Q ss_pred             CCCcEEEccCC---cCCHHHHHHH---HhCCCCccEEeeeCCC
Q 028616           72 PKLKRLEMAYH---VISTEIVLKI---LSSCALLEFLDLRGCW  108 (206)
Q Consensus        72 p~Lk~L~L~~~---~it~~~l~~i---l~~c~~Le~LdL~~C~  108 (206)
                      +.|++|+|+++   .|.+.+..+|   ++.-+.|+.|+++.+.
T Consensus       126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            68999999865   5798875555   4556899999998654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.74  E-value=4.7e-09  Score=82.78  Aligned_cols=105  Identities=15%  Similarity=0.080  Sum_probs=63.1

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++| .++.-  ..+ ..+++|+.|.++.+.+       +......++ .+++|++|+|++|.++......
T Consensus        64 ~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n~l-------~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~  131 (197)
T 4ezg_A           64 YAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGKDV-------TSDKIPNLS-GLTSLTLLDISHSAHDDSILTK  131 (197)
T ss_dssp             GCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECTTC-------BGGGSCCCT-TCTTCCEEECCSSBCBGGGHHH
T ss_pred             cCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECCcc-------CcccChhhc-CCCCCCEEEecCCccCcHhHHH
Confidence            4666677777666 33321  122 3367777777765533       221122232 6788888888888887755544


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      + ..+++|+.|+|++|..+..-.  ....+++|+.|.+..
T Consensus       132 l-~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A          132 I-NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQF  168 (197)
T ss_dssp             H-TTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTT
T ss_pred             H-hhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCC
Confidence            3 478888888888887332221  235677888887743

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.73  E-value=4.9e-09  Score=82.69  Aligned_cols=105  Identities=19%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIV   89 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l   89 (206)
                      ..+++|+.|+|++| .++......++ .+++|+.|.++.+.+       +......+. .+++|++|+|++|. +++-. 
T Consensus        85 ~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~i-------~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~-  153 (197)
T 4ezg_A           85 SGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSAH-------DDSILTKIN-TLPKVNSIDLSYNGAITDIM-  153 (197)
T ss_dssp             TTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSBC-------BGGGHHHHT-TCSSCCEEECCSCTBCCCCG-
T ss_pred             hcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCcc-------CcHhHHHHh-hCCCCCEEEccCCCCccccH-
Confidence            46899999999997 47765555554 589999999986643       444455554 89999999999998 77753 


Q ss_pred             HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                        .+.++++|+.|+|++|......   ....+++|+.|....
T Consensus       154 --~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          154 --PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             --GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECB
T ss_pred             --hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeC
Confidence              4778999999999999765333   236789999987743

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.73  E-value=4.3e-08  Score=84.23  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=18.8

Q ss_pred             CCCcEEEccCCcCCHHHHHHH---HhCCC-CccEEeeeCCCC
Q 028616           72 PKLKRLEMAYHVISTEIVLKI---LSSCA-LLEFLDLRGCWD  109 (206)
Q Consensus        72 p~Lk~L~L~~~~it~~~l~~i---l~~c~-~Le~LdL~~C~~  109 (206)
                      ++|++|+|++|.|++.++..+   +..++ +|+.|+|++|..
T Consensus       138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l  179 (362)
T 3goz_A          138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL  179 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence            455555555555554333322   22333 566666665543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.66  E-value=2.4e-09  Score=80.51  Aligned_cols=108  Identities=25%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      ..++|+.|++++|. +++..+......+++|+.|.++.+.+..    +      .....+++|++|+|++|.|+.. +..
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~------~~~~~l~~L~~L~Ls~n~i~~~-~~~   82 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTS----I------ANLPKLNKLKKLELSDNRVSGG-LEV   82 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCC----C------TTCCCCTTCCEEECCSSCCCSC-THH
T ss_pred             CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCC----c------hhhhcCCCCCEEECCCCcccch-HHH
Confidence            36889999999984 6544444455678999999998765421    1      2234789999999999998764 455


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +..++++|+.|+|++|.............+++|+.|.+..
T Consensus        83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence            6667999999999999855211112237789999998854

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=3.2e-08  Score=86.19  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHh-cCCCCcEEEeccCCC--CCH---HHHHHHH--hcCCCCceEEeecccCCCCCCCCChHHHHHHHh--c
Q 028616            1 MSDSIVAQIAG-RLSAVTFLDLSYCSK--IGA---PALEAIG--KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS--T   70 (206)
Q Consensus         1 Isd~~l~~l~~-~~~~L~~L~Ls~c~~--it~---~~l~~l~--~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~--~   70 (206)
                      |++.++..++. .+|+|++|+|+.+..  ..+   .++..+.  ..||+|+.|+|..+       .+++.++.+++.  .
T Consensus       205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-------~i~~~~~~~la~a~~  277 (362)
T 2ra8_A          205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-------EEQNVVVEMFLESDI  277 (362)
T ss_dssp             CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-------TTHHHHHHHHHHCSS
T ss_pred             CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-------CCchHHHHHHHhCcc
Confidence            46677778775 589999999864211  112   1222221  35789999999754       345666777764  5


Q ss_pred             CCCCcEEEccCCcCCHHHHHHHHhC---CCCccEEeeeCCC
Q 028616           71 MPKLKRLEMAYHVISTEIVLKILSS---CALLEFLDLRGCW  108 (206)
Q Consensus        71 ~p~Lk~L~L~~~~it~~~l~~il~~---c~~Le~LdL~~C~  108 (206)
                      +|+|++|+|+.|.|++.++.+++.+   +++|+.|+|++|.
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            7899999999988999988887654   7999999998885

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.65  E-value=6.5e-09  Score=79.60  Aligned_cols=108  Identities=22%  Similarity=0.157  Sum_probs=78.7

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      ..++|+.|+|++|. +++..+......+++|+.|.++.+.+...          .....+++|++|+|++|.|+.. +..
T Consensus        22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~N~l~~~-~~~   89 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV----------SNLPKLPKLKKLELSENRIFGG-LDM   89 (168)
T ss_dssp             CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC----------SSCCCCSSCCEEEEESCCCCSC-CCH
T ss_pred             CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh----------hhhccCCCCCEEECcCCcCchH-HHH
Confidence            36889999999985 55334444456789999999987754311          1234789999999999998764 455


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +..++++|+.|+|++|.............+++|+.|.+..
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence            5667999999999999765333212236788999998854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.59  E-value=1.2e-07  Score=81.33  Aligned_cols=116  Identities=18%  Similarity=0.111  Sum_probs=57.4

Q ss_pred             hcCC-CCcEEEeccCCCCCHHHHHHHHhc----CCCCceEEeecccCCCCCCCCChHHHHHHHhcC-CCCcEEEccCCcC
Q 028616           11 GRLS-AVTFLDLSYCSKIGAPALEAIGKH----CKLLVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVI   84 (206)
Q Consensus        11 ~~~~-~L~~L~Ls~c~~it~~~l~~l~~~----c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~-p~Lk~L~L~~~~i   84 (206)
                      ..+| +|++|+|++| .++..+..++++.    +++|+.|.|+.+.+..    .....+......+ ++|++|+|++|.|
T Consensus        47 ~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l  121 (362)
T 3goz_A           47 ANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSY----KSSDELVKTLAAIPFTITVLDLGWNDF  121 (362)
T ss_dssp             HTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG----SCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCCh----HHHHHHHHHHHhCCCCccEEECcCCcC
Confidence            3455 6666666665 3454333333332    3666666665543311    1122222222233 6777777777766


Q ss_pred             CHHHHHHHH---hC-CCCccEEeeeCCCCCCCChHHHH---hcCC-CCceeCCCC
Q 028616           85 STEIVLKIL---SS-CALLEFLDLRGCWDVKLDDKFMK---GNFP-NLKVLGPFV  131 (206)
Q Consensus        85 t~~~l~~il---~~-c~~Le~LdL~~C~~v~~~~~~l~---~~~~-~L~~L~~~~  131 (206)
                      +..+...+.   .. +++|+.|+|++|.........+.   ..++ +|+.|.+..
T Consensus       122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence            555444433   23 45777777777654322222221   2333 677776643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.43  E-value=5.3e-08  Score=75.30  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=31.6

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~  130 (206)
                      .+|+|++|+|++|.|+.-.....+..+++|+.|+|++|........  .+...+|+|+.|...
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence            5566666666666654422212344566666666666654332222  123456666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.36  E-value=3.8e-08  Score=77.53  Aligned_cols=60  Identities=25%  Similarity=0.115  Sum_probs=41.6

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCC------h---HHHHhcCCCCceeCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---KFMKGNFPNLKVLGP  129 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~------~---~~l~~~~~~L~~L~~  129 (206)
                      .+++|++|+|++|.|+.-.....+..+++|+.|++++|......      .   ..+...+++|+.|..
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            66888888888888887554455668899999999888643110      0   012467888888874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.35  E-value=1.7e-07  Score=72.34  Aligned_cols=107  Identities=18%  Similarity=0.039  Sum_probs=77.2

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++| .++  .+..+...+++|+.|.++.+.+..    +     .. ...+++|++|+|++|.|+.-. ..
T Consensus        17 ~~~~L~~L~l~~n-~l~--~i~~~~~~~~~L~~L~Ls~N~l~~----~-----~~-l~~l~~L~~L~Ls~N~l~~~~-~~   82 (176)
T 1a9n_A           17 NAVRDRELDLRGY-KIP--VIENLGATLDQFDAIDFSDNEIRK----L-----DG-FPLLRRLKTLLVNNNRICRIG-EG   82 (176)
T ss_dssp             CTTSCEEEECTTS-CCC--SCCCGGGGTTCCSEEECCSSCCCE----E-----CC-CCCCSSCCEEECCSSCCCEEC-SC
T ss_pred             CcCCceEEEeeCC-CCc--hhHHhhhcCCCCCEEECCCCCCCc----c-----cc-cccCCCCCEEECCCCcccccC-cc
Confidence            3889999999998 466  345577777799999998775531    1     11 237899999999999987431 12


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCCc
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM  132 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~~  132 (206)
                      +...+++|+.|+|++|.......-.....+++|+.|.+..-
T Consensus        83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence            34689999999999997653332112357899999988653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.31  E-value=5.5e-07  Score=75.37  Aligned_cols=96  Identities=23%  Similarity=0.248  Sum_probs=63.2

Q ss_pred             HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           30 PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        30 ~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      ..+..+.+.+|+|+.|.|+.+.+..    +  .++..+...+|+|+.|+|++|+|+...-..-++++ +|+.|+|+++..
T Consensus       160 ~~l~i~~~~l~~L~~L~Ls~N~l~~----l--~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          160 ATLRIIEENIPELLSLNLSNNRLYR----L--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL  232 (267)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSCCCC----C--GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred             HHHHHHHhhCCCCCEEECCCCCCCC----C--ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcC
Confidence            3445555778999999998775521    1  12223445789999999999988875332333444 899999998875


Q ss_pred             CC-CC---h--HHHHhcCCCCceeCCCCc
Q 028616          110 VK-LD---D--KFMKGNFPNLKVLGPFVM  132 (206)
Q Consensus       110 v~-~~---~--~~l~~~~~~L~~L~~~~~  132 (206)
                      .. ..   .  ..+.+.+|+|+.|.....
T Consensus       233 ~~~~~~~~~y~~~il~~~P~L~~LDg~~v  261 (267)
T 3rw6_A          233 CDTFRDQSTYISAIRERFPKLLRLDGHEL  261 (267)
T ss_dssp             GGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred             ccccCcchhHHHHHHHHCcccCeECCcCC
Confidence            42 11   1  135588999999987543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.31  E-value=2.2e-07  Score=78.20  Aligned_cols=110  Identities=15%  Similarity=0.035  Sum_probs=67.4

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCCh-HHHH-HH-HhcCCCCcEEEccCCcCCH--H
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD-DEAN-AI-ASTMPKLKRLEMAYHVIST--E   87 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d-~~~~-~i-a~~~p~Lk~L~L~~~~it~--~   87 (206)
                      +++|+.|+|++|. ++......+ ..+++|+.|.++.+.+       .. ..+. .+ ...+++|++|+|++|.|+.  .
T Consensus       148 ~~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  218 (312)
T 1wwl_A          148 KPGLKVLSIAQAH-SLNFSCEQV-RVFPALSTLDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSG  218 (312)
T ss_dssp             CTTCCEEEEESCS-CCCCCTTTC-CCCSSCCEEECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred             cCCCcEEEeeCCC-CccchHHHh-ccCCCCCEEECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence            3889999998874 443222222 3578888888875532       22 1111 22 1577888888888888874  3


Q ss_pred             HHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           88 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        88 ~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ....+..++++|+.|+|++|.............+++|+.|.+..
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~  262 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF  262 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence            34456678888888888888654222111113456777777744

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.31  E-value=1.6e-06  Score=73.32  Aligned_cols=101  Identities=21%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++...  . ...+++|+.|.++.+.+..    +     .. ...+++|++|+|++|.++..   
T Consensus       218 ~~~~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~----~-----~~-~~~l~~L~~L~l~~n~l~~~---  280 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNK-ITDLS--P-LANLSQLTWLEIGTNQISD----I-----NA-VKDLTKLKMLNVGSNQISDI---  280 (347)
T ss_dssp             GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCC----C-----GG-GTTCTTCCEEECCSSCCCCC---
T ss_pred             hcCCcCCEEEccCCc-cCCCc--c-hhcCCCCCEEECCCCccCC----C-----hh-HhcCCCcCEEEccCCccCCC---
Confidence            356777777777763 33211  1 3456777777776543321    0     01 22455555555555554442   


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      ..+..+++|+.|+|++|......... ...+++|+.|..
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L  318 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFL  318 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEEC
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEc
Confidence            12345555555555555433112111 234455555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.25  E-value=1.6e-06  Score=73.19  Aligned_cols=102  Identities=16%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.  +.. ...+++|+.|.++.+.+..    +     . ....+++|++|+|++|.++.....
T Consensus       240 ~~l~~L~~L~l~~n~-l~~--~~~-~~~l~~L~~L~l~~n~l~~----~-----~-~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQ-ISD--INA-VKDLTKLKMLNVGSNQISD----I-----S-VLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             TTCTTCCEEECCSSC-CCC--CGG-GTTCTTCCEEECCSSCCCC----C-----G-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             hcCCCCCEEECCCCc-cCC--Chh-HhcCCCcCEEEccCCccCC----C-----h-hhcCCCCCCEEECcCCcCCCcChh
Confidence            357777777777763 442  222 3456777777776554321    1     1 134677777777777777665443


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+ .++++|+.|+|++|.......   ...+++|+.|...
T Consensus       306 ~l-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~  341 (347)
T 4fmz_A          306 VI-GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFA  341 (347)
T ss_dssp             HH-HTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSS
T ss_pred             Hh-hccccCCEEEccCCccccccC---hhhhhccceeehh
Confidence            33 467777777777776542222   3567777777663

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.25  E-value=1.5e-07  Score=82.42  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH-
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL-   90 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~-   90 (206)
                      .+++|+.|+|++|. ++..........+++|+.|.|+.+.+.       .....++ ..+++|++|+|++|.++..... 
T Consensus        52 ~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~  122 (455)
T 3v47_A           52 RLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFL-------QLETGAF-NGLANLEVLTLTQCNLDGAVLSG  122 (455)
T ss_dssp             SCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTC-------EECTTTT-TTCTTCCEEECTTSCCBTHHHHS
T ss_pred             cCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccC-------ccChhhc-cCcccCCEEeCCCCCCCccccCc
Confidence            46666666666653 210000111233566777766644331       1111122 3678899999998888765433 


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ..+.++++|+.|+|++|.........+...+++|+.|.+..
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  163 (455)
T 3v47_A          123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF  163 (455)
T ss_dssp             STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred             ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence            23567889999999888765443333345678888887754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.24  E-value=3.6e-07  Score=76.71  Aligned_cols=111  Identities=14%  Similarity=0.011  Sum_probs=64.5

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChH-HHHH--HHhcCCCCcEEEccCCcCCH--
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-EANA--IASTMPKLKRLEMAYHVIST--   86 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~-~~~~--ia~~~p~Lk~L~L~~~~it~--   86 (206)
                      .+++|+.|+|++|. ++..... ....+++|+.|.|+.+.+       ... +...  ....+|+|++|+|++|.++.  
T Consensus       143 ~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~  213 (310)
T 4glp_A          143 LKPGLKVLSIAQAH-SPAFSCE-QVRAFPALTSLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPT  213 (310)
T ss_dssp             BCSCCCEEEEECCS-SCCCCTT-SCCCCTTCCEEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred             hccCCCEEEeeCCC-cchhhHH-HhccCCCCCEEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence            58888888888874 4322111 223568888888876532       221 1111  11367888888888888763  


Q ss_pred             HHHHHHHhCCCCccEEeeeCCCCCCCChHHHH--hcCCCCceeCCCC
Q 028616           87 EIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLGPFV  131 (206)
Q Consensus        87 ~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~--~~~~~L~~L~~~~  131 (206)
                      .....++.++++|++|+|++|.........+.  ...++|+.|.+..
T Consensus       214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence            33334556778888888888765432111111  1125777776643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.22  E-value=2.1e-06  Score=72.18  Aligned_cols=15  Identities=20%  Similarity=0.031  Sum_probs=6.7

Q ss_pred             hCCCCccEEeeeCCC
Q 028616           94 SSCALLEFLDLRGCW  108 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~  108 (206)
                      ..+++|+.|+|++|.
T Consensus       192 ~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          192 ASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             GGCTTCCEEECTTSC
T ss_pred             cCCCCCCEEEccCCc
Confidence            344444444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.21  E-value=1e-06  Score=74.07  Aligned_cols=113  Identities=16%  Similarity=0.066  Sum_probs=75.3

Q ss_pred             hcCCCCcEEEeccCCCCCHH--HHHHHHhc-CCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAP--ALEAIGKH-CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE   87 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~--~l~~l~~~-c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~   87 (206)
                      ..+++|+.|+|++|. ++..  .+..+... +++|+.|.++.+.+....       ...+ ..+++|++|+|++|+++..
T Consensus       118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-------~~~~-~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-------CEQV-RVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-------TTTC-CCCSSCCEEECCSCTTCHH
T ss_pred             hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-------HHHh-ccCCCCCEEECCCCCcCcc
Confidence            568999999999974 5533  23333221 489999999877653211       0112 3789999999999997654


Q ss_pred             -HHHHHH--hCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCCc
Q 028616           88 -IVLKIL--SSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFVM  132 (206)
Q Consensus        88 -~l~~il--~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~~  132 (206)
                       ++..-+  ..+++|+.|+|++|........  .+...+++|+.|.+..-
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence             333233  7899999999999975411111  23356789999988653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.21  E-value=1.7e-07  Score=74.11  Aligned_cols=58  Identities=14%  Similarity=0.088  Sum_probs=26.2

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .+++|++|+|++|.|+... ...+..+++|+.|+|++|......... ...+++|+.|.+
T Consensus        98 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l  155 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWL  155 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEEC
T ss_pred             CccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHH-hccCCCccEEEe
Confidence            4555566666555544211 112334556666666555433222211 133455555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.16  E-value=1.7e-06  Score=72.77  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=72.2

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.  +.. ...+++|+.|.++.+.+..    +..      ...+++|++|+|++|.++.-.. 
T Consensus       104 ~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~l~~n~l~~----~~~------l~~l~~L~~L~l~~n~l~~~~~-  168 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQ-ITD--VTP-LAGLSNLQVLYLDLNQITN----ISP------LAGLTNLQYLSIGNAQVSDLTP-  168 (308)
T ss_dssp             TTCTTCCEEECTTSC-CCC--CGG-GTTCTTCCEEECCSSCCCC----CGG------GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             cCCCCCCEEECCCCC-CCC--chh-hcCCCCCCEEECCCCccCc----Ccc------ccCCCCccEEEccCCcCCCChh-
Confidence            468999999999984 553  233 4568999999998765421    111      3488999999999998876332 


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                        +..+++|+.|+|++|.......   ...+++|+.|.+..
T Consensus       169 --l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          169 --LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKN  204 (308)
T ss_dssp             --GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTT
T ss_pred             --hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccC
Confidence              6789999999999987653332   35667777776643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.16  E-value=2.5e-06  Score=71.23  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=15.0

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|.|+...-   +..+++|+.|+|++|.
T Consensus       154 ~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          154 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             GCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred             cCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc
Confidence            33444444444444333211   3344444444444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.16  E-value=2.5e-06  Score=71.23  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=29.8

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+++|++|+|++|.++.-   ..+..+++|+.|+|++|.......   ...+++|+.|.+.
T Consensus       132 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~  186 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS  186 (291)
T ss_dssp             GCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred             CCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECC
Confidence            455666666666655443   234456666666666664432222   3456666666653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.15  E-value=2.5e-07  Score=76.32  Aligned_cols=38  Identities=16%  Similarity=0.065  Sum_probs=20.2

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   51 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   51 (206)
                      .+++|+.|+|++|. ++.... .....+++|+.|.++.+.
T Consensus        83 ~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           83 ELTNLTYLILTGNQ-LQSLPN-GVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             CCCCCCEEECCCCc-cCccCh-hHhcCCcCCCEEECCCCc
Confidence            46677777777663 442111 112345666666665443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.15  E-value=3.4e-07  Score=75.62  Aligned_cols=60  Identities=15%  Similarity=0.022  Sum_probs=31.5

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|.++.... ..+..+++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~  234 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLND  234 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCS
T ss_pred             CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHc-ccCcccCEEeccC
Confidence            45566666666665544321 122356666666666665443333222 4566666666643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.15  E-value=1.1e-06  Score=73.80  Aligned_cols=112  Identities=14%  Similarity=-0.063  Sum_probs=74.5

Q ss_pred             hcCCCCcEEEeccCCCCCHH----HHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616           11 GRLSAVTFLDLSYCSKIGAP----ALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST   86 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~----~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~   86 (206)
                      ..+++|+.|+|++|. ++..    ....+. .+++|+.|.|+.+.+....    .   . ....+++|++|+|++|+++.
T Consensus       114 ~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~----~---~-~~~~l~~L~~L~Ls~N~l~~  183 (310)
T 4glp_A          114 ATGLALSSLRLRNVS-WATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFS----C---E-QVRAFPALTSLDLSDNPGLG  183 (310)
T ss_dssp             CCCBCCSSCEEESCC-CSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCC----T---T-SCCCCTTCCEEECCSCTTCH
T ss_pred             ccCCCCCEEEeeccc-ccchhhhhHHHHhh-hccCCCEEEeeCCCcchhh----H---H-HhccCCCCCEEECCCCCCcc
Confidence            468999999999974 5531    122333 6899999999877552111    0   1 12378999999999999665


Q ss_pred             H-HHHHH--HhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCCc
Q 028616           87 E-IVLKI--LSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFVM  132 (206)
Q Consensus        87 ~-~l~~i--l~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~~  132 (206)
                      . ++...  ...+++|++|+|++|........  .+...+++|+.|.+..-
T Consensus       184 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          184 ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            4 33222  25789999999999976421111  13367789999988653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.14  E-value=4.4e-07  Score=77.15  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=29.2

Q ss_pred             CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      +++|++|+|++|.|+  .+-.-+.++++|+.|+|++|....+...  ...+++|+.|.+.
T Consensus       182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~--l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELDLR  237 (328)
T ss_dssp             STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGG--GGGCTTCCEEECT
T ss_pred             CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchh--hccCCCCCEEECc
Confidence            566666666666554  2222244566666666666654432221  2345566666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.13  E-value=4.3e-07  Score=73.29  Aligned_cols=58  Identities=16%  Similarity=0.094  Sum_probs=31.8

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+++|++|+|++|+|+.  +-.-+.++++|+.|+|++|....+.... ...+++|+.|.+.
T Consensus       110 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~  167 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGA-FDRLSSLTHAYLF  167 (229)
T ss_dssp             TCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECT
T ss_pred             cchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHH-HhCCCCCCEEEee
Confidence            55667777776666552  2122356677777777766544333222 2445666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.13  E-value=6.7e-07  Score=71.76  Aligned_cols=108  Identities=14%  Similarity=0.053  Sum_probs=54.4

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++.....+ ...+++|+.|.|+.+.+..    +..    .+...+++|++|+|++|+|+.... .
T Consensus        54 ~l~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l~~----l~~----~~f~~l~~L~~L~L~~N~l~~~~~-~  122 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQ-ISELAPDA-FQGLRSLNSLVLYGNKITE----LPK----SLFEGLFSLQLLLLNANKINCLRV-D  122 (220)
T ss_dssp             TCTTCCEEECCSSC-CCEECTTT-TTTCSSCCEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCCT-T
T ss_pred             CCCCCCEEECCCCc-CCCcCHHH-hhCCcCCCEEECCCCcCCc----cCH----hHccCCCCCCEEECCCCCCCEeCH-H
Confidence            35666666666652 33211111 1334666666666554321    111    112356777777777776554221 1


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       123 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~  161 (220)
T 2v9t_B          123 AFQDLHNLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQ  161 (220)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred             HcCCCCCCCEEECCCCcCCEECHHHH-hCCCCCCEEEeCC
Confidence            23456777777777776543333222 3456666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.13  E-value=2.4e-07  Score=75.45  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=18.4

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   51 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   51 (206)
                      .+++|+.|+|++|. ++.... .....+++|+.|.|+.+.
T Consensus        57 ~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           57 GLTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             CcccCCEEECCCCc-CCccCH-hHhccCCcCCEEECCCCc
Confidence            45666666666652 332111 111334566666665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.12  E-value=4e-07  Score=75.11  Aligned_cols=85  Identities=18%  Similarity=0.208  Sum_probs=43.6

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.  +..+ ..+++|+.|.++.+.+....    .    .+...+++|++|+|++|.++... .
T Consensus        60 ~~l~~L~~L~l~~n~-l~~--~~~l-~~l~~L~~L~L~~n~l~~~~----~----~~~~~l~~L~~L~L~~n~l~~~~-~  126 (272)
T 3rfs_A           60 QYLPNVRYLALGGNK-LHD--ISAL-KELTNLTYLILTGNQLQSLP----N----GVFDKLTNLKELVLVENQLQSLP-D  126 (272)
T ss_dssp             GGCTTCCEEECTTSC-CCC--CGGG-TTCTTCCEEECTTSCCCCCC----T----TTTTTCTTCCEEECTTSCCCCCC-T
T ss_pred             ccCCCCcEEECCCCC-CCC--chhh-cCCCCCCEEECCCCccCccC----h----hHhcCCcCCCEEECCCCcCCccC-H
Confidence            357888888888764 442  2223 45678888888765442110    0    01124455555555555544211 1


Q ss_pred             HHHhCCCCccEEeeeCCC
Q 028616           91 KILSSCALLEFLDLRGCW  108 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~  108 (206)
                      ..+.++++|+.|+|++|.
T Consensus       127 ~~~~~l~~L~~L~L~~n~  144 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLAHNQ  144 (272)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             HHhccCCCCCEEECCCCc
Confidence            112345555555555553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.11  E-value=3e-07  Score=79.32  Aligned_cols=109  Identities=15%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ...+++|++|+|++|. ++.....++ ..+++|+.|.|+.+.+...    ..   .+ ...+++|++|+|++|.++.-. 
T Consensus        65 ~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~---~~-~~~l~~L~~L~L~~n~l~~l~-  133 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNAIRYL----PP---HV-FQNVPLLTVLVLERNDLSSLP-  133 (390)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCCC----CT---TT-TTTCTTCCEEECCSSCCCCCC-
T ss_pred             hcccccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCCCCCcC----CH---HH-hcCCCCCCEEECCCCccCcCC-
Confidence            3457777777777763 443211122 3467777777765543211    00   11 125667777777777655211 


Q ss_pred             HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      ..++.++++|++|+|++|.........+ ..+++|+.|.+.
T Consensus       134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~  173 (390)
T 3o6n_A          134 RGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLS  173 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECC
T ss_pred             HHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECC
Confidence            1223456677777777665443222222 345566666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.11  E-value=2.9e-06  Score=78.38  Aligned_cols=56  Identities=27%  Similarity=0.265  Sum_probs=34.0

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|.|+...-   +..|++|+.|+|++|....+  .. ...+++|+.|.+..
T Consensus       151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFS  206 (605)
T ss_dssp             SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEECCS
T ss_pred             ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEccC
Confidence            66777777777776554322   55677777777777754422  11 25567777776643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.10  E-value=8.5e-08  Score=80.02  Aligned_cols=108  Identities=18%  Similarity=0.111  Sum_probs=52.2

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++... ......+++|+.|.++.+.+..       .........+++|++|+|++|.|+.... 
T Consensus       123 ~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-  192 (306)
T 2z66_A          123 LSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSP-  192 (306)
T ss_dssp             TTCTTCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECT-
T ss_pred             hhccCCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCH-
Confidence            457888888888763 33211 1122346778888776543311       0000011245566666666665544211 


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      ..+.++++|+.|+|++|.........+ ..+++|+.|.+
T Consensus       193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  230 (306)
T 2z66_A          193 TAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDY  230 (306)
T ss_dssp             TTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEEC
T ss_pred             HHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeEC
Confidence            112345566666666555432222111 34455555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.10  E-value=2.6e-07  Score=74.20  Aligned_cols=109  Identities=12%  Similarity=0.059  Sum_probs=60.6

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. |+...-. ....+++|+.|.|+.+.+..    +...    ....+++|++|+|++|+|+...- 
T Consensus        54 ~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~l~~----~~~~----~~~~l~~L~~L~Ls~N~l~~~~~-  122 (220)
T 2v70_A           54 KKLPQLRKINFSNNK-ITDIEEG-AFEGASGVNEILLTSNRLEN----VQHK----MFKGLESLKTLMLRSNRITCVGN-  122 (220)
T ss_dssp             GGCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCC----CCGG----GGTTCSSCCEEECTTSCCCCBCT-
T ss_pred             ccCCCCCEEECCCCc-CCEECHH-HhCCCCCCCEEECCCCccCc----cCHh----HhcCCcCCCEEECCCCcCCeECH-
Confidence            456777777777753 4421111 12345777777776554421    1111    12367788888888877654211 


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ..+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~  162 (220)
T 2v70_A          123 DSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLA  162 (220)
T ss_dssp             TSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCCEEECCS
T ss_pred             hHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCCEEEecC
Confidence            123467788888888776553332222 4566777776643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.09  E-value=4.5e-07  Score=73.85  Aligned_cols=109  Identities=16%  Similarity=0.151  Sum_probs=72.3

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.... .....+++|+.|.|+.+.+...    ..    .+...+++|++|+|++|.|+.... 
T Consensus        80 ~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~----~~----~~~~~l~~L~~L~Ls~N~l~~~~~-  148 (251)
T 3m19_A           80 DDLTELGTLGLANNQ-LASLPL-GVFDHLTQLDKLYLGGNQLKSL----PS----GVFDRLTKLKELRLNTNQLQSIPA-  148 (251)
T ss_dssp             TTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCC----CT----TTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred             ccCCcCCEEECCCCc-ccccCh-hHhcccCCCCEEEcCCCcCCCc----Ch----hHhccCCcccEEECcCCcCCccCH-
Confidence            468999999999974 552211 2235679999999987755311    11    112367899999999998764221 


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ..+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~  188 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITLFG  188 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred             HHcCcCcCCCEEECCCCcCCccCHHHH-hCCCCCCEEEeeC
Confidence            234578999999999987654443233 5677888887754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.09  E-value=6.7e-08  Score=80.65  Aligned_cols=61  Identities=25%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|.++...+...+..+++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~  208 (306)
T 2z66_A          148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSH  208 (306)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTT
T ss_pred             cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCC
Confidence            567777777777766553333445567777777777775442222222 4566777776643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.09  E-value=1.4e-06  Score=79.82  Aligned_cols=101  Identities=17%  Similarity=0.054  Sum_probs=62.0

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL   93 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il   93 (206)
                      ..|+.|+|++|. ++.  +.. ...+++|+.|.|+.+.+.    .+..    .+ ..+++|++|+|++|.|+.  +- -+
T Consensus       441 ~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~l~----~lp~----~~-~~l~~L~~L~Ls~N~l~~--lp-~l  504 (567)
T 1dce_A          441 ADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNRLR----ALPP----AL-AALRCLEVLQASDNALEN--VD-GV  504 (567)
T ss_dssp             TTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSCCC----CCCG----GG-GGCTTCCEEECCSSCCCC--CG-GG
T ss_pred             cCceEEEecCCC-CCC--CcC-ccccccCcEeecCccccc----ccch----hh-hcCCCCCEEECCCCCCCC--Cc-cc
Confidence            358888888873 442  333 345678888888766543    1111    12 367788888888877665  22 35


Q ss_pred             hCCCCccEEeeeCCCCCCCC-hHHHHhcCCCCceeCCCC
Q 028616           94 SSCALLEFLDLRGCWDVKLD-DKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~~v~~~-~~~l~~~~~~L~~L~~~~  131 (206)
                      .++++|+.|+|++|...... ...+ ..+++|+.|.+..
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~  542 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQG  542 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTT
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHH-hcCCCCCEEEecC
Confidence            56778888888777655332 2222 4577777777644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.09  E-value=2.3e-06  Score=79.03  Aligned_cols=56  Identities=20%  Similarity=0.183  Sum_probs=38.3

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|+.|+|++|.|+..   ..+..|++|+.|+|++|.......   ...+++|+.|.+..
T Consensus       129 ~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          129 HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSK  184 (605)
T ss_dssp             GCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred             CCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcC
Confidence            677788888887776653   345677888888888876543322   35677888877744

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.09  E-value=2.6e-07  Score=76.37  Aligned_cols=37  Identities=19%  Similarity=0.011  Sum_probs=17.6

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      .+++|+.|+|++| .++.....++ ..+++|+.|.++.+
T Consensus        54 ~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           54 ACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDN   90 (285)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSC
T ss_pred             cCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCC
Confidence            4566666666665 2332111111 23456666666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.09  E-value=4e-07  Score=71.85  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=73.2

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .++|+.|+|++|. ++... ......+++|+.|.++.+.+..    +..    .+...+++|++|+|++|.|+... ...
T Consensus        27 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~----~~~~~l~~L~~L~Ls~n~l~~~~-~~~   95 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLP-NGVFDELTSLTQLYLGGNKLQS----LPN----GVFNKLTSLTYLNLSTNQLQSLP-NGV   95 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred             CCCCcEEEcCCCc-cCcCC-hhhhcccccCcEEECCCCccCc----cCh----hhcCCCCCcCEEECCCCcCCccC-HhH
Confidence            5689999999974 55221 1223568999999998765531    111    12247899999999999877321 223


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +.++++|++|+|++|......... ...+++|+.|.+..
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQ  133 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCS
T ss_pred             hcCccCCCEEEcCCCcCcccCHhH-hccCCcCCEEECCC
Confidence            568999999999998755433322 25678899988854

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.08  E-value=3.9e-07  Score=74.96  Aligned_cols=59  Identities=17%  Similarity=0.187  Sum_probs=27.4

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+++|++|+|++|.|+.... ..+..+++|+.|+|++|.........+ ..+++|+.|.+.
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~  189 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLD  189 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred             cCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECC
Confidence            44555555555555442111 113345666666666554332222211 345556665553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.07  E-value=8.8e-07  Score=75.28  Aligned_cols=87  Identities=21%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHH--------HhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAI--------GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV   83 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l--------~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~   83 (206)
                      .+++|+.|+|++|..++.- -..+        ...+++|+.|.|+.+.+.    .+..    . ...+++|++|+|++|.
T Consensus       148 ~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~lp~----~-l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIR----SLPA----S-IANLQNLKSLKIRNSP  217 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCC----CCCG----G-GGGCTTCCEEEEESSC
T ss_pred             cCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcC----cchH----h-hcCCCCCCEEEccCCC
Confidence            4666666666665433210 0001        012556666666544332    1111    0 1245555555555555


Q ss_pred             CCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           84 ISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        84 it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      ++.  +..-+..+++|+.|+|++|...
T Consensus       218 l~~--l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          218 LSA--LGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             CCC--CCGGGGGCTTCCEEECTTCTTC
T ss_pred             CCc--CchhhccCCCCCEEECcCCcch
Confidence            442  1112344555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.07  E-value=1.7e-07  Score=79.95  Aligned_cols=39  Identities=15%  Similarity=0.062  Sum_probs=20.0

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|+++.-.....+.++++|+.|++++|.
T Consensus       122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A          122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            556666666666655421111123455666666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.06  E-value=6.4e-07  Score=70.60  Aligned_cols=106  Identities=17%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .++|+.|+|++|. ++.  +......+++|+.|.|+.+.+...    ..   .+ ...+++|++|+|++|+|+...-. .
T Consensus        30 ~~~l~~L~L~~n~-i~~--ip~~~~~l~~L~~L~Ls~N~i~~i----~~---~~-f~~l~~L~~L~Ls~N~l~~i~~~-~   97 (193)
T 2wfh_A           30 PRDVTELYLDGNQ-FTL--VPKELSNYKHLTLIDLSNNRISTL----SN---QS-FSNMTQLLTLILSYNRLRCIPPR-T   97 (193)
T ss_dssp             CTTCCEEECCSSC-CCS--CCGGGGGCTTCCEEECCSSCCCCC----CT---TT-TTTCTTCCEEECCSSCCCBCCTT-T
T ss_pred             CCCCCEEECCCCc-Cch--hHHHhhcccCCCEEECCCCcCCEe----CH---hH-ccCCCCCCEEECCCCccCEeCHH-H
Confidence            4588999998873 552  222345678899999987655311    11   11 23678999999999886653221 2


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +.++++|+.|+|+++....+....+ ..+++|+.|.+..
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~  135 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIGA  135 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCS
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhh-hcCccccEEEeCC
Confidence            4578899999998887654443322 4567788877754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.06  E-value=4.1e-07  Score=79.65  Aligned_cols=60  Identities=17%  Similarity=0.097  Sum_probs=32.9

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|+|+..... .+.++++|+.|+|++|......... ...+++|+.|.+..
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~  404 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHT  404 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred             CcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCCHhH-hccCCcccEEEccC
Confidence            566777777777665443211 2345677777777776544333222 24566666666643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.05  E-value=8.4e-06  Score=67.09  Aligned_cols=106  Identities=18%  Similarity=0.122  Sum_probs=53.0

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCC--------------CCCCChHHHHHHHhcCCCCcEE
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA--------------DKLSQDDEANAIASTMPKLKRL   77 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~--------------g~~v~d~~~~~ia~~~p~Lk~L   77 (206)
                      .+++|+.|+|++|. ++.-  .. ...+++|+.|.++.+.+...              +..++.-  .. ...+++|++|
T Consensus        61 ~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L  133 (263)
T 1xeu_A           61 FFTNLKELHLSHNQ-ISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DS-LIHLKNLEIL  133 (263)
T ss_dssp             GCTTCCEEECCSSC-CCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBS--GG-GTTCTTCCEE
T ss_pred             hCCCCCEEECCCCc-cCCC--hh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCC--hh-hcCcccccEE
Confidence            46666666666653 3321  11 34566677776665543210              0111110  11 2255666666


Q ss_pred             EccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           78 EMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        78 ~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      +|++|+|+.-.   .+..+++|+.|+|++|.....   .....+++|+.|.+.
T Consensus       134 ~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          134 SIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT  180 (263)
T ss_dssp             ECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEE
T ss_pred             ECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCC
Confidence            66666655432   345566666666666654422   112445666666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.05  E-value=1.9e-07  Score=83.68  Aligned_cols=39  Identities=18%  Similarity=0.134  Sum_probs=22.9

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|.++...+...+.++++|+.|++++|.
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            566667777766665543222234556666666666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.03  E-value=4.2e-07  Score=81.58  Aligned_cols=109  Identities=18%  Similarity=0.132  Sum_probs=56.9

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|++|+|++|. ++.....+ ...|++|+.|.|+.+.+...    .   ..++ ..+++|++|+|++|.++.-.-.
T Consensus        49 ~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n~l~~~----~---~~~~-~~l~~L~~L~L~~n~l~~l~~~  118 (570)
T 2z63_A           49 FSFPELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNPIQSL----A---LGAF-SGLSSLQKLVAVETNLASLENF  118 (570)
T ss_dssp             TTCSSCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCEE----C---TTTT-TTCTTCCEEECTTSCCCCSTTC
T ss_pred             hCCCCceEEECCCCc-CCccCccc-ccCchhCCEEeCcCCcCCcc----C---Hhhh-cCccccccccccccccccCCCc
Confidence            357788888888773 44321112 23567888888765543210    0   0111 2566777777776665442211


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      . +.+|++|++|+|++|......-......+++|+.|.+.
T Consensus       119 ~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A          119 P-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             S-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             c-ccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence            1 34667777777776654321111112446666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.03  E-value=5.9e-07  Score=69.20  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=67.4

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .++|+.|+|++|. ++... ......+++|+.|.++.+.+..    +..    .....+++|++|+|++|.|+... ...
T Consensus        27 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~----~~~~~l~~L~~L~l~~N~l~~~~-~~~   95 (177)
T 2o6r_A           27 PSSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSQNQIQS----LPD----GVFDKLTKLTILYLHENKLQSLP-NGV   95 (177)
T ss_dssp             CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred             CCCCcEEEeCCCc-ccEeC-HHHhcCcccccEEECCCCcceE----eCh----hHccCCCccCEEECCCCCccccC-HHH
Confidence            4688999999874 44211 1122456889999987665431    111    11236789999999998876321 123


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +..+++|+.|+|++|....+.... ...+++|+.|.+..
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHT  133 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred             hhCCcccCEEECcCCcceEeCHHH-hcCCcccCEEEecC
Confidence            457889999999888655333322 24577888877744

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.03  E-value=5.4e-07  Score=74.15  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             hcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           69 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        69 ~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ..+++|++|+|++|.|+.... ..+.++++|+.|+|++|......... ...+++|+.|.+..
T Consensus       154 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          154 DKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGA-FDSLEKLKMLQLQE  214 (270)
T ss_dssp             TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred             cCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCHHH-hccccCCCEEEecC
Confidence            478999999999998765322 22457899999999999655434322 25678888887754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.02  E-value=5.1e-07  Score=75.51  Aligned_cols=38  Identities=21%  Similarity=0.146  Sum_probs=15.9

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|+|+... ..++..+++|+.|+|++|.
T Consensus       122 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G          122 GLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred             CCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCc
Confidence            3445555555555443211 1112334455555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.01  E-value=3.8e-06  Score=74.89  Aligned_cols=39  Identities=15%  Similarity=0.143  Sum_probs=18.7

Q ss_pred             cCCCCcEEEeccCCCCCH-HHHHHHHhcCCCCceEEeeccc
Q 028616           12 RLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHP   51 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~   51 (206)
                      .+++|+.|+|++|. ++. ..+......+++|+.|.++.+.
T Consensus       346 ~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          346 HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS  385 (520)
T ss_dssp             CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred             cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence            35555555555543 332 2232333445666666665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.01  E-value=5.5e-07  Score=81.32  Aligned_cols=107  Identities=17%  Similarity=0.083  Sum_probs=48.4

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. |+.-.-. ....+++|+.|.|+.+.+.    .+...    ...++++|++|+|++|+++.-.- .
T Consensus        74 ~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~l~----~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~-~  142 (635)
T 4g8a_A           74 SFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQ----SLALG----AFSGLSSLQKLVAVETNLASLEN-F  142 (635)
T ss_dssp             TCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCC----EECGG----GGTTCTTCCEEECTTSCCCCSTT-C
T ss_pred             CCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCcCC----CCCHH----HhcCCCCCCEEECCCCcCCCCCh-h
Confidence            45566666666652 3311000 1133556666666544331    11111    12355666666666665443110 1


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .+.++++|+.|+|++|.............+++|+.|.+
T Consensus       143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             hhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            13456666666666665332121122244556666555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.01  E-value=4.8e-07  Score=74.39  Aligned_cols=37  Identities=24%  Similarity=0.222  Sum_probs=17.4

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      .+++|+.|+|++| .++.....+ ...+++|+.|.++.+
T Consensus        50 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           50 SFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN   86 (276)
T ss_dssp             TCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC
T ss_pred             cccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCC
Confidence            3566666666665 233211111 133456666666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.98  E-value=7.6e-07  Score=81.46  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ...+++|+.|+|++|. ++.....++ ..+++|+.|.|+.+.+...    ..   . +...+++|++|+|++|.|+.-. 
T Consensus        71 ~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~---~-~~~~l~~L~~L~L~~n~l~~l~-  139 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNAIRYL----PP---H-VFQNVPLLTVLVLERNDLSSLP-  139 (597)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCCC----CT---T-TTTTCTTCCEEECCSSCCCCCC-
T ss_pred             HccCCCCcEEECCCCC-CCCCChHHh-cCCCCCCEEECCCCcCCCC----CH---H-HHcCCCCCCEEEeeCCCCCCCC-
Confidence            4467888888888763 443211122 3567888888876544211    10   0 1136677777777777665211 


Q ss_pred             HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      ..++.++++|++|+|++|.........+ ..+++|+.|.+.
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~  179 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLS  179 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECT
T ss_pred             HHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECc
Confidence            1223566777777777775443332222 445666666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.98  E-value=7.7e-06  Score=72.29  Aligned_cols=56  Identities=20%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|+++..   .-+.+|++|+.|++++|.......   ...+++|+.|.+..
T Consensus       329 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~  384 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLND  384 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCC
T ss_pred             cCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccC
Confidence            667777777777765543   234567777777777776542222   35677777776643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=5.8e-06  Score=69.10  Aligned_cols=92  Identities=18%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             HHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCC
Q 028616            6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS   85 (206)
Q Consensus         6 l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it   85 (206)
                      +..+...+|+|++|+|++|..-+-.++..+...+++|+.|+|+.+.+..      -..+..+. .+ +|++|.|++|.++
T Consensus       162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~------~~~l~~l~-~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------ERELDKIK-GL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS------GGGGGGGT-TS-CCSEEECTTSTTG
T ss_pred             HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC------chhhhhcc-cC-CcceEEccCCcCc
Confidence            3344467999999999998533334555666789999999998775531      11222222 33 9999999999987


Q ss_pred             H------HHHHHHHhCCCCccEEeee
Q 028616           86 T------EIVLKILSSCALLEFLDLR  105 (206)
Q Consensus        86 ~------~~l~~il~~c~~Le~LdL~  105 (206)
                      .      .-...++..+|+|+.||=.
T Consensus       234 ~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          234 DTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             cccCcchhHHHHHHHHCcccCeECCc
Confidence            4      3456788899999999743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.97  E-value=1.3e-06  Score=73.50  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=18.3

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      +++|+.|+|++| .++......+...+++|+.|.++.+
T Consensus       143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence            455555555554 2443333334444555666555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.96  E-value=2.2e-05  Score=70.16  Aligned_cols=39  Identities=21%  Similarity=0.173  Sum_probs=18.4

Q ss_pred             cCCCCcEEEccCCcCCHHHH-HHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIV-LKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l-~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|.++.-.. ...+..+++|+.|+|++|.
T Consensus       359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  398 (549)
T 2z81_A          359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT  398 (549)
T ss_dssp             SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence            44555555555555443321 2234445555555555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.95  E-value=4.3e-07  Score=86.45  Aligned_cols=39  Identities=15%  Similarity=0.214  Sum_probs=20.1

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|.++.......+.++++|+.|+|++|.
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            455555555555554433222234455666666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.94  E-value=1e-05  Score=71.49  Aligned_cols=55  Identities=20%  Similarity=0.118  Sum_probs=29.2

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+++|++|+|++|.++....   +..+++|+.|++++|.....  .. ...+++|+.|...
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~  361 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SS-LANLTNINWLSAG  361 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECC
T ss_pred             CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hh-hccCCCCCEEeCC
Confidence            55666666666665444321   34566666666666643322  11 2456666666553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.94  E-value=7.2e-07  Score=80.98  Aligned_cols=109  Identities=17%  Similarity=0.149  Sum_probs=57.5

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|++|+|++|. ++...-.+ ...+++|+.|.|+.+.+....       ..++ ..+++|++|+|++|.++...-.
T Consensus        53 ~~l~~L~~L~Ls~n~-l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~-------p~~~-~~l~~L~~L~L~~n~l~~~~~~  122 (606)
T 3vq2_A           53 SNFSELQWLDLSRCE-IETIEDKA-WHGLHHLSNLILTGNPIQSFS-------PGSF-SGLTSLENLVAVETKLASLESF  122 (606)
T ss_dssp             TTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCCCC-------TTSS-TTCTTCCEEECTTSCCCCSSSS
T ss_pred             cCCccCcEEeCCCCc-ccccCHHH-hhchhhcCEeECCCCcccccC-------hhhc-CCcccCCEEEccCCcccccccc
Confidence            357778888887763 44211111 245677888877655432110       0111 2567777777777765432211


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      . +.++++|++|+|++|......-......+++|+.|.+.
T Consensus       123 ~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls  161 (606)
T 3vq2_A          123 P-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS  161 (606)
T ss_dssp             C-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred             c-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence            1 44667777777777654321111112456666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.94  E-value=1.8e-07  Score=84.05  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=16.8

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      .+++|++|+|++|.++...+-..+..|++|+.|+|++|.
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            344555555554444322222223344445555554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.93  E-value=5.1e-07  Score=79.39  Aligned_cols=88  Identities=22%  Similarity=0.115  Sum_probs=45.3

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++.....++ ..+++|+.|.|+.+.+...    ...    ....+++|++|+|++|.|+.-.- .
T Consensus        86 ~l~~L~~L~Ls~n~-i~~i~~~~~-~~l~~L~~L~L~~n~l~~~----~~~----~~~~l~~L~~L~L~~N~i~~~~~-~  154 (440)
T 3zyj_A           86 HLRHLEILQLSRNH-IRTIEIGAF-NGLANLNTLELFDNRLTTI----PNG----AFVYLSKLKELWLRNNPIESIPS-Y  154 (440)
T ss_dssp             SCSSCCEEECCSSC-CCEECGGGG-TTCSSCCEEECCSSCCSSC----CTT----TSCSCSSCCEEECCSCCCCEECT-T
T ss_pred             CCCCCCEEECCCCc-CCccChhhc-cCCccCCEEECCCCcCCee----CHh----HhhccccCceeeCCCCcccccCH-H
Confidence            46777777777763 442222222 3467777777765544211    110    11255677777777766543211 1


Q ss_pred             HHhCCCCccEEeeeCCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v  110 (206)
                      .+.++++|+.|+|++|..+
T Consensus       155 ~~~~l~~L~~L~l~~~~~l  173 (440)
T 3zyj_A          155 AFNRIPSLRRLDLGELKRL  173 (440)
T ss_dssp             TTTTCTTCCEEECCCCTTC
T ss_pred             HhhhCcccCEeCCCCCCCc
Confidence            2335566666666655443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.93  E-value=8.4e-07  Score=71.20  Aligned_cols=106  Identities=15%  Similarity=0.064  Sum_probs=71.6

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL   93 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il   93 (206)
                      ++|+.|+|++|. |+..... ....+++|+.|.|+.+.+..    +.   ..++ ..+++|++|+|++|.|+.-. ..++
T Consensus        32 ~~l~~L~l~~n~-i~~i~~~-~~~~l~~L~~L~Ls~N~i~~----~~---~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPPG-AFSPYKKLRRIDLSNNQISE----LA---PDAF-QGLRSLNSLVLYGNKITELP-KSLF  100 (220)
T ss_dssp             TTCCEEECCSSC-CCEECTT-SSTTCTTCCEEECCSSCCCE----EC---TTTT-TTCSSCCEEECCSSCCCCCC-TTTT
T ss_pred             cCCCEEECCCCc-CCCcCHh-HhhCCCCCCEEECCCCcCCC----cC---HHHh-hCCcCCCEEECCCCcCCccC-HhHc
Confidence            589999999974 5522111 22457899999998765421    11   1112 37899999999999877321 2234


Q ss_pred             hCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           94 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~  137 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYD  137 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCS
T ss_pred             cCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCC
Confidence            678999999999997664443332 5678888888754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.93  E-value=4.1e-07  Score=82.61  Aligned_cols=60  Identities=17%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             cCCCCcEEEccCCcCCHHHHH--HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVL--KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~--~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+|+|++|+|++|.++...+.  ..+..+++|+.|+|++|.........+ ..+++|+.|.+.
T Consensus       447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls  508 (606)
T 3t6q_A          447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKMMNHVDLS  508 (606)
T ss_dssp             TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred             CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh-ccccCCCEEECC
Confidence            456666666666665542211  224456666666666665432222111 345555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.92  E-value=3.8e-06  Score=69.16  Aligned_cols=61  Identities=23%  Similarity=0.211  Sum_probs=45.0

Q ss_pred             hcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           37 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        37 ~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      ..+++|+.|.++.+.+       +.-  .. ...+++|++|+|++|.|+..   ..+..+++|+.|+|++|...
T Consensus       125 ~~l~~L~~L~Ls~N~i-------~~~--~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          125 IHLKNLEILSIRNNKL-------KSI--VM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TTCTTCCEEECTTSCC-------CBC--GG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred             cCcccccEEECCCCcC-------CCC--hH-HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence            3467777777765543       221  12 34789999999999998876   45678999999999998754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.92  E-value=8.3e-07  Score=76.26  Aligned_cols=38  Identities=24%  Similarity=0.022  Sum_probs=19.4

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   51 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   51 (206)
                      .+++|+.|+|++| +|+...-.+ ...+++|+.|.|+.+.
T Consensus        62 ~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           62 RLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             CCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred             cccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCc
Confidence            4566667777665 243211111 1345666666666544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.92  E-value=1.1e-06  Score=77.59  Aligned_cols=58  Identities=22%  Similarity=0.190  Sum_probs=29.4

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .+++|++|+|++|.++..... .+.++++|+.|+|++|.........+ ..+++|+.|.+
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l  183 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPTEAL-SHLHGLIVLRL  183 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCHHHH-TTCTTCCEEEE
T ss_pred             ccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccChhHh-cccCCCcEEeC
Confidence            455666666666554432111 12356666666666665443333222 44556666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.92  E-value=4e-07  Score=71.53  Aligned_cols=105  Identities=17%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616           15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS   94 (206)
Q Consensus        15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~   94 (206)
                      +|+.|+|++| +++......+...+++|+.|.|+.+.+...    ..   .++ ..+++|++|+|++|+|+.... ..+.
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~---~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~   99 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGI----EP---NAF-EGASHIQELQLGENKIKEISN-KMFL   99 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCB----CT---TTT-TTCTTCCEEECCSCCCCEECS-SSST
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCc----CH---hHc-CCcccCCEEECCCCcCCccCH-HHhc
Confidence            6667777665 343211111224456677777665543210    00   011 255666666666666543221 1123


Q ss_pred             CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      ++++|++|+|+++.........+ ..+++|+.|.+.
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~  134 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLA  134 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECT
T ss_pred             CCCCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEeC
Confidence            45666666666665432221111 344555555553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.91  E-value=5.5e-07  Score=79.45  Aligned_cols=88  Identities=18%  Similarity=0.068  Sum_probs=42.3

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++| .++.....++ ..+++|+.|.|+.+.+...    ...    ....+++|++|+|++|.|+.-. ..
T Consensus        97 ~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~~----~~~~l~~L~~L~L~~N~l~~~~-~~  165 (452)
T 3zyi_A           97 HLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNWLTVI----PSG----AFEYLSKLRELWLRNNPIESIP-SY  165 (452)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSBC----CTT----TSSSCTTCCEEECCSCCCCEEC-TT
T ss_pred             CCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCcCCcc----Chh----hhcccCCCCEEECCCCCcceeC-Hh
Confidence            4566666666665 2332111111 2356666666654433211    100    1125667777777777655321 11


Q ss_pred             HHhCCCCccEEeeeCCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v  110 (206)
                      .+.++++|+.|+|++|..+
T Consensus       166 ~~~~l~~L~~L~l~~~~~l  184 (452)
T 3zyi_A          166 AFNRVPSLMRLDLGELKKL  184 (452)
T ss_dssp             TTTTCTTCCEEECCCCTTC
T ss_pred             HHhcCCcccEEeCCCCCCc
Confidence            2345566666666665444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.91  E-value=2.9e-06  Score=73.11  Aligned_cols=55  Identities=24%  Similarity=0.138  Sum_probs=26.2

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+|+|++|+|++|+++.-  ..-+..+++|+.|+|++|......    ...+++|+.|.+.
T Consensus       293 ~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~  347 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLS  347 (390)
T ss_dssp             CCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECC
T ss_pred             CCCCCCEEECCCCcceec--CccccccCcCCEEECCCCccceeC----chhhccCCEEEcC
Confidence            445555555555554421  111234555666666555543222    2345555555553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.90  E-value=2.7e-05  Score=66.12  Aligned_cols=112  Identities=16%  Similarity=0.065  Sum_probs=61.7

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++... ..+...+++|+.|.++.+.+....  ..  .+ .....++.|+.++|..+.+++..+..
T Consensus       196 ~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~--~~--~l-~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          196 SIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTDLDTFH--FS--EL-STGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             TCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCBCTTCC--CC---------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             ccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCcccccc--cc--cc-ccccccchhhccccccccccCcchhh
Confidence            45667777777653 33222 233445677777777665443211  00  11 11234566666666666666665554


Q ss_pred             H---HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 I---LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 i---l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +   +..+++|+.|+|++|....+.... ...+++|+.|.+..
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~-~~~l~~L~~L~L~~  310 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIWLHT  310 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCS
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHH-HhcCCCCCEEEeeC
Confidence            4   457788888888887655333322 24567777777643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.89  E-value=1.7e-06  Score=71.09  Aligned_cols=91  Identities=24%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.....++ ..+++|+.|.++.+.+....    .   .. ...+++|++|+|++|.++...+.
T Consensus        73 ~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~----~---~~-~~~l~~L~~L~l~~n~l~~~~l~  142 (276)
T 2z62_A           73 QSLSHLSTLILTGNP-IQSLALGAF-SGLSSLQKLVAVETNLASLE----N---FP-IGHLKTLKELNVAHNLIQSFKLP  142 (276)
T ss_dssp             TTCTTCCEEECTTCC-CCEECTTTT-TTCTTCCEEECTTSCCCCST----T---CC-CTTCTTCCEEECCSSCCCCCCCC
T ss_pred             cCCcCCCEEECCCCc-cCccChhhh-cCCccccEEECCCCCccccC----c---hh-cccCCCCCEEECcCCccceecCc
Confidence            468999999999974 543222222 45789999999766542111    0   01 23778999999999987764444


Q ss_pred             HHHhCCCCccEEeeeCCCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVK  111 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~  111 (206)
                      ..+.++++|+.|+|++|....
T Consensus       143 ~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          143 EYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             GGGGGCTTCCEEECCSSCCCE
T ss_pred             hhhccCCCCCEEECCCCCCCc
Confidence            456688999999999987553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.89  E-value=2.2e-06  Score=69.04  Aligned_cols=106  Identities=12%  Similarity=0.017  Sum_probs=73.5

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .++|+.|+|++|. ++...- .....+++|+.|.|+.+.+..    +..    .+...+++|++|+|++|+|+.-. ..+
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~L~~N~l~~----i~~----~~~~~l~~L~~L~Ls~N~l~~l~-~~~  107 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEP-GVFDSLINLKELYLGSNQLGA----LPV----GVFDSLTQLTVLDLGTNQLTVLP-SAV  107 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred             CCCCCEEEcCCCc-cCccCH-HHhhCccCCcEEECCCCCCCC----cCh----hhcccCCCcCEEECCCCcCCccC-hhH
Confidence            4789999999974 553211 223457999999998776521    111    12247899999999999977421 223


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +.++++|+.|+|+++....+... + ..+++|+.|.+..
T Consensus       108 ~~~l~~L~~L~Ls~N~l~~lp~~-~-~~l~~L~~L~L~~  144 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLTELPRG-I-ERLTHLTHLALDQ  144 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTT-G-GGCTTCSEEECCS
T ss_pred             hCcchhhCeEeccCCcccccCcc-c-ccCCCCCEEECCC
Confidence            46899999999999986644332 2 6788999988754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.88  E-value=8.2e-07  Score=71.24  Aligned_cols=108  Identities=11%  Similarity=0.065  Sum_probs=71.6

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .+.++.|+|++|. ++..........+++|+.|.|+.+.+..    +..   .++ ..+++|++|+|++|.|+...- ..
T Consensus        31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~----i~~---~~~-~~l~~L~~L~Ls~N~l~~~~~-~~  100 (220)
T 2v70_A           31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITD----IEE---GAF-EGASGVNEILLTSNRLENVQH-KM  100 (220)
T ss_dssp             CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCE----ECT---TTT-TTCTTCCEEECCSSCCCCCCG-GG
T ss_pred             CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCE----ECH---HHh-CCCCCCCEEECCCCccCccCH-hH
Confidence            3468899999874 5532111223567999999998765431    111   112 378999999999998764322 23


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~  138 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYD  138 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTT
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCC
Confidence            4689999999999998664433332 4678888888754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.87  E-value=3.7e-07  Score=82.88  Aligned_cols=59  Identities=14%  Similarity=0.111  Sum_probs=30.2

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      .+++|++|+|++|.++.... ..+.++++|+.|+|++|......... ...+++|+.|.+.
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~  529 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCS  529 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEECT
T ss_pred             cCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEECC
Confidence            45666666666665543211 12345666666666666544221112 2445666666653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.87  E-value=5.9e-07  Score=75.70  Aligned_cols=88  Identities=19%  Similarity=0.193  Sum_probs=45.5

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      ++++|++|+|+++..++......+ ..+++|+.|.|+.+.+..   .+.    ..+ ..+++|++|+|++|.|+.. +-.
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~---~~p----~~~-~~l~~L~~L~Ls~N~l~~~-~p~  143 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSG---AIP----DFL-SQIKTLVTLDFSYNALSGT-LPP  143 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEE---ECC----GGG-GGCTTCCEEECCSSEEESC-CCG
T ss_pred             CCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCC---cCC----HHH-hCCCCCCEEeCCCCccCCc-CCh
Confidence            467777777774222332111122 346777777776554320   000    112 2567777777777765431 111


Q ss_pred             HHhCCCCccEEeeeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~  109 (206)
                      .+.++++|++|+|++|..
T Consensus       144 ~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             GGGGCTTCCEEECCSSCC
T ss_pred             HHhcCCCCCeEECcCCcc
Confidence            234567777777777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.86  E-value=7.4e-06  Score=68.93  Aligned_cols=115  Identities=15%  Similarity=0.124  Sum_probs=52.9

Q ss_pred             hcCCCCcEEEeccCCCCCHHHH-HHHHhcCCCCceEEeecccCCCC--------------CCCCChHHHHHHHhcCCCCc
Q 028616           11 GRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLLVVLCRNMHPLDTA--------------DKLSQDDEANAIASTMPKLK   75 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l-~~l~~~c~~L~~L~L~~~~~~~~--------------g~~v~d~~~~~ia~~~p~Lk   75 (206)
                      ..+++|+.|+|++|. ++..++ ......+++|+.|.++.+.+...              +..++......+ ..+++|+
T Consensus       142 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~  219 (330)
T 1xku_A          142 NGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLA  219 (330)
T ss_dssp             TTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG-TTCTTCC
T ss_pred             cCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence            356677777776653 332111 11224456677776654433210              011111111112 2456666


Q ss_pred             EEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           76 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        76 ~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      +|+|++|.++..... .+..+++|+.|+|++|....+...  ...+++|+.|.+.
T Consensus       220 ~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~~L~l~  271 (330)
T 1xku_A          220 KLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLH  271 (330)
T ss_dssp             EEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSSCCTT--TTTCSSCCEEECC
T ss_pred             EEECCCCcCceeChh-hccCCCCCCEEECCCCcCccCChh--hccCCCcCEEECC
Confidence            666666655442211 233566666666666654422221  1345556665553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.85  E-value=1.1e-06  Score=79.36  Aligned_cols=105  Identities=20%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616           15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS   94 (206)
Q Consensus        15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~   94 (206)
                      ++++|+|++| +|+.-.-.+ ...+++|+.|.|+.+.+..    +...   ++ ..+++|++|+|++|+|+.-.. ..+.
T Consensus        53 ~~~~LdLs~N-~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~----i~~~---~f-~~L~~L~~L~Ls~N~l~~l~~-~~f~  121 (635)
T 4g8a_A           53 STKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRCEIQT----IEDG---AY-QSLSHLSTLILTGNPIQSLAL-GAFS  121 (635)
T ss_dssp             TCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCE----ECTT---TT-TTCTTCCEEECTTCCCCEECG-GGGT
T ss_pred             CCCEEEeeCC-CCCCCCHHH-HhCCCCCCEEECCCCcCCC----cChh---Hh-cCCCCCCEEEccCCcCCCCCH-HHhc
Confidence            7999999997 465321112 2467999999998765421    1111   12 378999999999998765321 2356


Q ss_pred             CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ++++|++|+|++|....+....+ ..+++|+.|.+..
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~  157 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAH  157 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCcCCCCChhhh-hcCcccCeecccc
Confidence            89999999999997654343222 5678899888754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.84  E-value=7.5e-06  Score=77.05  Aligned_cols=38  Identities=26%  Similarity=0.347  Sum_probs=17.0

Q ss_pred             cCCCCcEEEeccCCCCCHHHHH--HHHhcCCCCceEEeecc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALE--AIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~--~l~~~c~~L~~L~L~~~   50 (206)
                      ++++|++|+|++|. ++.....  .+...|++|+.|.++.+
T Consensus       149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC
Confidence            34555555555542 3321111  11344566666665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.84  E-value=3.8e-06  Score=74.87  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcC-CCCcEEEccCCcCCH
Q 028616            8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVIST   86 (206)
Q Consensus         8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~-p~Lk~L~L~~~~it~   86 (206)
                      .....+++|+.|+|++|. ++...-......+++|+.|.++.+.+       +..    +...+ ++|++|+|++|+|+ 
T Consensus       368 ~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l-------~~~----~~~~l~~~L~~L~Ls~N~l~-  434 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNIL-------TDT----IFRCLPPRIKVLDLHSNKIK-  434 (520)
T ss_dssp             HHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCC-------CGG----GGGSCCTTCCEEECCSSCCC-
T ss_pred             HHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCC-------Ccc----hhhhhcccCCEEECCCCccc-
Confidence            345679999999999985 44311111234578999999986644       211    12233 69999999999887 


Q ss_pred             HHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           87 EIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        87 ~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                       .+-.-+.++++|+.|+|++|....+... ....+++|+.|.+..
T Consensus       435 -~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          435 -SIPKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHT  477 (520)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred             -ccchhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccEEECcC
Confidence             3333234889999999999876544433 225577888887744

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.83  E-value=7.1e-07  Score=81.01  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=15.5

Q ss_pred             CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      +++|++|+|++|.++.......+.++++|+.|+|++|.
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence            44444444444443322211223344444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.83  E-value=3.3e-06  Score=75.67  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=18.0

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      +++|+.|+|++| .++......++..+++|+.|.|+.+
T Consensus       143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC
Confidence            455555555554 2343333334444555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.83  E-value=9.2e-07  Score=75.98  Aligned_cols=86  Identities=22%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .++|+.|+|++| +|+.-....+...+++|+.|.|+.+.+...    ...   ++ ..+++|++|+|++|+|+.-. ...
T Consensus        38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i----~~~---~~-~~l~~L~~L~Ls~N~l~~~~-~~~  107 (361)
T 2xot_A           38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI----SSE---AF-VPVPNLRYLDLSSNHLHTLD-EFL  107 (361)
T ss_dssp             CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEE----CTT---TT-TTCTTCCEEECCSSCCCEEC-TTT
T ss_pred             CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCcc----Chh---hc-cCCCCCCEEECCCCcCCcCC-HHH
Confidence            356899999997 466433222333789999999987654311    100   11 24556666666665544311 011


Q ss_pred             HhCCCCccEEeeeCCC
Q 028616           93 LSSCALLEFLDLRGCW  108 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~  108 (206)
                      +.++++|+.|+|++|.
T Consensus       108 ~~~l~~L~~L~L~~N~  123 (361)
T 2xot_A          108 FSDLQALEVLLLYNNH  123 (361)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             hCCCcCCCEEECCCCc
Confidence            2344555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.82  E-value=3.7e-06  Score=73.81  Aligned_cols=60  Identities=13%  Similarity=0.009  Sum_probs=30.2

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|+|+.... ..+.++++|+.|+|++|....+.... ...+++|+.|.+..
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~  288 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDL-FTPLHHLERIHLHH  288 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTT-TSSCTTCCEEECCS
T ss_pred             cCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhH-hccccCCCEEEcCC
Confidence            44555555555554443211 11335666777777666544333222 24566777776644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.81  E-value=2.3e-06  Score=78.74  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=19.3

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   51 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   51 (206)
                      ++++|++|+|++|. ++.....++ ..|++|+.|.|+.+.
T Consensus        47 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A           47 RYSQLTSLDVGFNT-ISKLEPELC-QKLPMLKVLNLQHNE   84 (680)
T ss_dssp             GGTTCSEEECCSSC-CCCCCTTHH-HHCTTCCEEECCSSC
T ss_pred             CCCcCcEEECCCCc-cCccCHHHH-hcccCcCEEECCCCc
Confidence            46666666666652 332111122 335666666665443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.81  E-value=5.1e-06  Score=73.18  Aligned_cols=60  Identities=18%  Similarity=0.020  Sum_probs=31.5

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|.|+.... ..+.++++|+.|+|++|......... ...+++|+.|.+..
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~  299 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDL-FTPLRYLVELHLHH  299 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTS-STTCTTCCEEECCS
T ss_pred             CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHH-hccccCCCEEEccC
Confidence            45556666666555443221 12345677777777776544323222 24466777776644

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.80  E-value=1.7e-05  Score=66.62  Aligned_cols=39  Identities=21%  Similarity=0.042  Sum_probs=21.0

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   52 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   52 (206)
                      .+++|+.|+|++|. ++.....++ ..+++|+.|.++.+.+
T Consensus        74 ~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l  112 (330)
T 1xku_A           74 NLKNLHTLILINNK-ISKISPGAF-APLVKLERLYLSKNQL  112 (330)
T ss_dssp             TCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSCC
T ss_pred             cCCCCCEEECCCCc-CCeeCHHHh-cCCCCCCEEECCCCcC
Confidence            46677777777653 332211122 3456777777765543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.80  E-value=2.4e-06  Score=71.91  Aligned_cols=105  Identities=12%  Similarity=-0.017  Sum_probs=50.8

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +++|+.|+|++|. ++...-.. ...+++|+.|.++.+.+       +......+...+++|++|+|++|.|+...   -
T Consensus       119 ~~~L~~L~l~~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~  186 (317)
T 3o53_A          119 GQGKKNIYLANNK-ITMLRDLD-EGCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNLQYNFIYDVK---G  186 (317)
T ss_dssp             CSSCEEEECCSSC-CCSGGGBC-TGGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEECTTSCCCEEE---C
T ss_pred             cCCCCEEECCCCC-CCCccchh-hhccCCCCEEECCCCCC-------CcccHHHHhhccCcCCEEECCCCcCcccc---c
Confidence            4455555555542 33211111 12346666666654432       22112223345666777777766655431   1


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ...+++|+.|+|++|........  ...+++|+.|.+..
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~  223 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRN  223 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTT
T ss_pred             ccccccCCEEECCCCcCCcchhh--hcccCcccEEECcC
Confidence            11366677777766654433222  23456666666643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.79  E-value=3.2e-06  Score=74.63  Aligned_cols=105  Identities=16%  Similarity=0.229  Sum_probs=58.9

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616           15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS   94 (206)
Q Consensus        15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~   94 (206)
                      +|+.|+|++| .++.... .....+++|+.|.|+.+.+...    .   ...+ ..+++|++|+|++|+++..... .+.
T Consensus       225 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~----~---~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~  293 (477)
T 2id5_A          225 NLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNPISTI----E---GSML-HELLRLQEIQLVGGQLAVVEPY-AFR  293 (477)
T ss_dssp             CCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSCCCEE----C---TTSC-TTCTTCCEEECCSSCCSEECTT-TBT
T ss_pred             cccEEECcCC-cccccCH-HHhcCccccCeeECCCCcCCcc----C---hhhc-cccccCCEEECCCCccceECHH-Hhc
Confidence            5555555554 2332221 2235577888888876544211    1   1111 3667888888888776653221 234


Q ss_pred             CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +|++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~  329 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEESVF-HSVGNLETLILDS  329 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGGGB-SCGGGCCEEECCS
T ss_pred             CcccCCEEECCCCcCceeCHhHc-CCCcccCEEEccC
Confidence            67888888888876553343222 4567777776643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.78  E-value=1.6e-05  Score=73.30  Aligned_cols=113  Identities=12%  Similarity=0.001  Sum_probs=68.4

Q ss_pred             HhcCCCCcEEEeccCCCCCHH------------H----HHHHHh--cCCCCceEEeecccCCCCCCCCChHHHHHHHhcC
Q 028616           10 AGRLSAVTFLDLSYCSKIGAP------------A----LEAIGK--HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM   71 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~------------~----l~~l~~--~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~   71 (206)
                      ..++++|++|+|++|. ++..            .    +..-..  .+++|+.|.|+.+.+.  + .+.    ..+ .++
T Consensus       202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~-~~p----~~l-~~l  272 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--T-KLP----TFL-KAL  272 (636)
T ss_dssp             GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--S-SCC----TTT-TTC
T ss_pred             HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--c-cCh----HHH-hcC
Confidence            3468999999999985 6642            0    222222  6899999999866432  1 111    112 267


Q ss_pred             CCCcEEEccCCc-CCHHHHHH-H-----HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           72 PKLKRLEMAYHV-ISTEIVLK-I-----LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        72 p~Lk~L~L~~~~-it~~~l~~-i-----l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ++|++|+|++|+ ++...+-. +     ...+++|+.|+|++|....+........+++|+.|.+..
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~  339 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY  339 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence            888888888887 77622222 2     134588888888887655333311235567777776643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.78  E-value=8.5e-07  Score=71.45  Aligned_cols=106  Identities=10%  Similarity=0.012  Sum_probs=54.1

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeec-ccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      .+++|+.|+|++|..++.-.-. ....+++|+.|.++. +.+..    +..   . ....+++|++|+|++|.++.  +-
T Consensus        53 ~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~----i~~---~-~f~~l~~L~~L~l~~n~l~~--lp  121 (239)
T 2xwt_C           53 NLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTY----IDP---D-ALKELPLLKFLGIFNTGLKM--FP  121 (239)
T ss_dssp             TCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCE----ECT---T-SEECCTTCCEEEEEEECCCS--CC
T ss_pred             CCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeE----cCH---H-HhCCCCCCCEEeCCCCCCcc--cc
Confidence            4667777777766424321111 113466777777764 43321    010   0 11256777777777776554  11


Q ss_pred             HHHhCCCCcc---EEeeeCCCCC-CCChHHHHhcCCCCc-eeCCC
Q 028616           91 KILSSCALLE---FLDLRGCWDV-KLDDKFMKGNFPNLK-VLGPF  130 (206)
Q Consensus        91 ~il~~c~~Le---~LdL~~C~~v-~~~~~~l~~~~~~L~-~L~~~  130 (206)
                      . +..+++|+   .|++++|..+ ...... ...+++|+ .|.+.
T Consensus       122 ~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          122 D-LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLY  164 (239)
T ss_dssp             C-CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECC
T ss_pred             c-cccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcC
Confidence            2 44566666   7777777322 112111 24456666 66653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.77  E-value=6.2e-06  Score=75.40  Aligned_cols=103  Identities=21%  Similarity=0.142  Sum_probs=52.1

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++......+ ..+++|+.|.|+.+.+..    +     ......+|+|++|+|++|.++.  +-.
T Consensus       252 ~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~----l-----~~~~~~l~~L~~L~Ls~N~l~~--i~~  318 (597)
T 3oja_B          252 NYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNRLVA----L-----NLYGQPIPTLKVLDLSHNHLLH--VER  318 (597)
T ss_dssp             GCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSCCCE----E-----ECSSSCCTTCCEEECCSSCCCC--CGG
T ss_pred             cCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCCCCC----C-----CcccccCCCCcEEECCCCCCCc--cCc
Confidence            45566666666552 332211112 234556666665443211    0     0011246777777777776652  211


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      -+..+++|+.|+|++|......    ...+++|+.|.+..
T Consensus       319 ~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~  354 (597)
T 3oja_B          319 NQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSH  354 (597)
T ss_dssp             GHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCS
T ss_pred             ccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeC
Confidence            2345677777777777654332    24566777766643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.75  E-value=3.2e-05  Score=60.53  Aligned_cols=84  Identities=19%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH----
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE----   87 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~----   87 (206)
                      .+++|+.|+|++|. ++.  +..+ ..+++|+.|.++.+.+       +.-........+++|++|+|++|.++..    
T Consensus        91 ~~~~L~~L~L~~N~-l~~--l~~~-~~l~~L~~L~l~~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           91 VADTLEELWISYNQ-IAS--LSGI-EKLVNLRVLYMSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             HHHHCSEEEEEEEE-CCC--HHHH-HHHHHSSEEEESEEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             cCCcCCEEECcCCc-CCc--CCcc-ccCCCCCEEECCCCcC-------CchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence            45677777777763 442  2333 2357788888876543       3322222334899999999999987554    


Q ss_pred             -----HHHHHHhCCCCccEEeeeC
Q 028616           88 -----IVLKILSSCALLEFLDLRG  106 (206)
Q Consensus        88 -----~l~~il~~c~~Le~LdL~~  106 (206)
                           ....++..+|+|+.||-..
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld~~~  183 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEECCGG
T ss_pred             cchHHHHHHHHHhCCCcEEECCcc
Confidence                 2345678899999998433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.74  E-value=1.2e-05  Score=67.11  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=60.0

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. ++.  +... ..+++|+.|.++.+.+..    +..     ....+++|++|+|++|+|+.-.. .
T Consensus        53 ~l~~L~~L~L~~n~-l~~--~~~~-~~l~~L~~L~Ls~N~l~~----l~~-----~~~~l~~L~~L~l~~N~l~~l~~-~  118 (290)
T 1p9a_G           53 PYTRLTQLNLDRAE-LTK--LQVD-GTLPVLGTLDLSHNQLQS----LPL-----LGQTLPALTVLDVSFNRLTSLPL-G  118 (290)
T ss_dssp             TCTTCCEEECTTSC-CCE--EECC-SCCTTCCEEECCSSCCSS----CCC-----CTTTCTTCCEEECCSSCCCCCCS-S
T ss_pred             cCCCCCEEECCCCc-cCc--ccCC-CCCCcCCEEECCCCcCCc----Cch-----hhccCCCCCEEECCCCcCcccCH-H
Confidence            46666677776653 332  1111 456777777776554421    111     12477899999999998764211 2


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .+.++++|+.|+|++|.........+ ..+++|+.|.+
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  155 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSL  155 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred             HHcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEEC
Confidence            24678999999999986543333221 33455555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.73  E-value=1.9e-05  Score=72.29  Aligned_cols=105  Identities=23%  Similarity=0.318  Sum_probs=75.1

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++  .+..-...+++|+.|.|+.+.+..    +.     .+ ..+++|++|+|++|.|+....-
T Consensus       460 ~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~----lp-----~l-~~l~~L~~L~Ls~N~l~~~~~p  526 (567)
T 1dce_A          460 EQLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALEN----VD-----GV-ANLPRLQELLLCNNRLQQSAAI  526 (567)
T ss_dssp             GGGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCC----CG-----GG-TTCSSCCEEECCSSCCCSSSTT
T ss_pred             cccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCC----Cc-----cc-CCCCCCcEEECCCCCCCCCCCc
Confidence            468899999999974 55  333334568999999998775531    21     23 4789999999999998765313


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCCh--HHHHhcCCCCceeC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  128 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~--~~l~~~~~~L~~L~  128 (206)
                      ..+.++++|+.|+|++|.......  ..+...+|+|+.|.
T Consensus       527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            345689999999999987543322  23557789999884

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.72  E-value=3e-06  Score=65.18  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=62.6

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.-. ......+++|+.|.++.+.+...    ...    +...+++|++|+|++|.|+.-. .
T Consensus        49 ~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~l~~~----~~~----~~~~l~~L~~L~l~~N~l~~~~-~  117 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTILYLHENKLQSL----PNG----VFDKLTQLKELALDTNQLKSVP-D  117 (177)
T ss_dssp             TTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCC----CTT----TTTTCTTCCEEECCSSCCSCCC-T
T ss_pred             cCcccccEEECCCCc-ceEeC-hhHccCCCccCEEECCCCCcccc----CHH----HhhCCcccCEEECcCCcceEeC-H
Confidence            468999999999974 55211 11234679999999987755311    111    1247899999999999877321 2


Q ss_pred             HHHhCCCCccEEeeeCCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v  110 (206)
                      .++..+++|+.|+|+++...
T Consensus       118 ~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          118 GIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCBC
T ss_pred             HHhcCCcccCEEEecCCCee
Confidence            34567899999999999765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.71  E-value=2e-05  Score=74.16  Aligned_cols=87  Identities=17%  Similarity=0.234  Sum_probs=57.6

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ...+++|++|+|++|. ++.  ...+ ..|++|+.|.++.+.+...   +.     . ...+++|++|+|++|.++....
T Consensus       174 ~~~l~~L~~L~Ls~n~-l~~--~~~~-~~l~~L~~L~Ls~n~l~~~---~~-----~-l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          174 SDGCGELKHLAISGNK-ISG--DVDV-SRCVNLEFLDVSSNNFSTG---IP-----F-LGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             TTCCTTCCEEECCSSE-EES--CCBC-TTCTTCCEEECCSSCCCSC---CC-----B-CTTCCSCCEEECCSSCCCSCHH
T ss_pred             hccCCCCCEEECCCCc-ccc--cCCc-ccCCcCCEEECcCCcCCCC---Cc-----c-cccCCCCCEEECcCCcCCCccc
Confidence            4578999999999874 331  1111 5688999999976654211   11     1 2377888888888888775433


Q ss_pred             HHHHhCCCCccEEeeeCCCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v  110 (206)
                       ..+.+|++|+.|+|++|...
T Consensus       241 -~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          241 -RAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             -HHTTTCSSCCEEECCSSCCE
T ss_pred             -HHHhcCCCCCEEECCCCccc
Confidence             33457888888888887643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.70  E-value=3.9e-06  Score=75.17  Aligned_cols=104  Identities=13%  Similarity=-0.016  Sum_probs=50.5

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +++|+.|+|++|. ++...-..+ ..+++|+.|.|+.+.+       +......+...+++|++|+|++|.|+...   .
T Consensus       119 l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---~  186 (487)
T 3oja_A          119 GQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNLQYNFIYDVK---G  186 (487)
T ss_dssp             CSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEECTTSCCCEEE---C
T ss_pred             cCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCCCCC-------CCcChHHHhhhCCcccEEecCCCcccccc---c
Confidence            4555566665553 332111111 2356666666655433       11112223335666777777666655431   1


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      ...+++|+.|+|++|........  ...+++|+.|.+.
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls  222 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLR  222 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECT
T ss_pred             cccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEec
Confidence            12466666666666654433222  2345566666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=2.3e-05  Score=75.32  Aligned_cols=56  Identities=18%  Similarity=0.097  Sum_probs=26.5

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCC-CceeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN-LKVLGPF  130 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~-L~~L~~~  130 (206)
                      .+++|++|+|++|.++  .+- .+..+++|+.|+|++|....+...  ...+++ |+.|.+.
T Consensus       571 ~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFS  627 (876)
T ss_dssp             TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECC
T ss_pred             cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECc
Confidence            4555555555555544  121 334455555666655543322211  133444 6666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.68  E-value=9.5e-06  Score=76.34  Aligned_cols=103  Identities=23%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.  +..-...+++|+.|.|+.+.+.    .+..    .| ..+++|+.|+|++|.|+  .+-
T Consensus       221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~l~----~lp~----~~-~~l~~L~~L~Ls~N~l~--~lp  286 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNSLT----ELPA----EI-KNLSNLRVLDLSHNRLT--SLP  286 (727)
T ss_dssp             -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSCCS----CCCG----GG-GGGTTCCEEECTTSCCS--SCC
T ss_pred             ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCcCc----ccCh----hh-hCCCCCCEEeCcCCcCC--ccC
Confidence            356788888888864 331  1111125677888877766442    1111    12 35667777777777665  222


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .-+.++++|++|+|++|....+...  ...+++|+.|.+
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~~lp~~--~~~l~~L~~L~L  323 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVTTLPWE--FGNLCNLQFLGV  323 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCCCCCSS--TTSCTTCCCEEC
T ss_pred             hhhcCCCCCCEEECCCCCCCccChh--hhcCCCccEEeC
Confidence            2234566666666666644322221  234455555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=2.4e-05  Score=75.26  Aligned_cols=106  Identities=20%  Similarity=0.118  Sum_probs=59.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCCh----HHHHHHH---hcCCCCcEEEccCCcC
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD----DEANAIA---STMPKLKRLEMAYHVI   84 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d----~~~~~ia---~~~p~Lk~L~L~~~~i   84 (206)
                      .+++|+.|+|++|...+  .+......+++|+.|.|+.+.+      ++.    ..+..+.   ..+|+|++|+|++|.+
T Consensus       489 ~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRG------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             GCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTT------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             cCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCC------cccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            57778888887774332  1112224567788887765530      122    2222221   3456788888888776


Q ss_pred             CHHHHHH--HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           85 STEIVLK--ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        85 t~~~l~~--il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      +  .+-.  .+.++++|+.|+|++|....+.   ....+++|+.|.+.
T Consensus       561 ~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          561 E--EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLD  603 (876)
T ss_dssp             C--BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECC
T ss_pred             C--ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECc
Confidence            6  3333  4567778888888777644333   12445566666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.67  E-value=3.7e-05  Score=68.29  Aligned_cols=35  Identities=26%  Similarity=0.224  Sum_probs=18.8

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   51 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   51 (206)
                      +++|++|+|++|. ++.  +..+ ..+++|+.|.++.+.
T Consensus        41 l~~L~~L~Ls~n~-l~~--~~~l-~~l~~L~~L~Ls~n~   75 (457)
T 3bz5_A           41 LATLTSLDCHNSS-ITD--MTGI-EKLTGLTKLICTSNN   75 (457)
T ss_dssp             HTTCCEEECCSSC-CCC--CTTG-GGCTTCSEEECCSSC
T ss_pred             cCCCCEEEccCCC-ccc--Chhh-cccCCCCEEEccCCc
Confidence            5666777776653 332  1222 345666666665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.65  E-value=2.3e-06  Score=72.00  Aligned_cols=57  Identities=14%  Similarity=0.072  Sum_probs=24.5

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .+++|++|+|++|.++...-  .+..+++|++|+|++|.........+ ..+++|+.|.+
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L  275 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNV  275 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEEC
T ss_pred             cCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEEC
Confidence            34555555555554431110  13345555555555554331111111 34455555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.63  E-value=3.2e-05  Score=68.71  Aligned_cols=97  Identities=18%  Similarity=0.157  Sum_probs=73.0

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|++|. ++.-  .  ...+++|+.|.++.+.+..    +.      + ..+++|++|+|++|.++.-.  
T Consensus        61 ~~l~~L~~L~Ls~n~-l~~~--~--~~~l~~L~~L~Ls~N~l~~----~~------~-~~l~~L~~L~L~~N~l~~l~--  122 (457)
T 3bz5_A           61 EKLTGLTKLICTSNN-ITTL--D--LSQNTNLTYLACDSNKLTN----LD------V-TPLTKLTYLNCDTNKLTKLD--  122 (457)
T ss_dssp             GGCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSSCCSC----CC------C-TTCTTCCEEECCSSCCSCCC--
T ss_pred             cccCCCCEEEccCCc-CCeE--c--cccCCCCCEEECcCCCCce----ee------c-CCCCcCCEEECCCCcCCeec--
Confidence            468999999999984 5542  2  3567999999998775431    11      2 47899999999999987632  


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                        +..+++|+.|++++|......    ...+++|+.|....
T Consensus       123 --~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~  157 (457)
T 3bz5_A          123 --VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHL  157 (457)
T ss_dssp             --CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTT
T ss_pred             --CCCCCcCCEEECCCCccceec----cccCCcCCEEECCC
Confidence              678999999999999765432    35678888887743

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.63  E-value=9.5e-06  Score=73.32  Aligned_cols=13  Identities=31%  Similarity=0.427  Sum_probs=7.2

Q ss_pred             cCCCCcEEEeccC
Q 028616           12 RLSAVTFLDLSYC   24 (206)
Q Consensus        12 ~~~~L~~L~Ls~c   24 (206)
                      .+++|+.|+|++|
T Consensus       351 ~l~~L~~L~l~~n  363 (562)
T 3a79_B          351 SPSSFTFLNFTQN  363 (562)
T ss_dssp             SCCCCCEEECCSS
T ss_pred             CCCCceEEECCCC
Confidence            4555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.59  E-value=8.1e-06  Score=73.79  Aligned_cols=36  Identities=19%  Similarity=0.009  Sum_probs=16.8

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      .+++|++|+|++|.|+.-.  ..  .+++|++|+|++|..
T Consensus        98 ~l~~L~~L~Ls~N~l~~lp--~~--~l~~L~~L~Ls~N~l  133 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQNIS--CC--PMASLRHLDLSFNDF  133 (562)
T ss_dssp             TCTTCCEEECTTSCCCEEC--SC--CCTTCSEEECCSSCC
T ss_pred             CCCCCCEEECCCCcCCccC--cc--ccccCCEEECCCCCc
Confidence            4455555555555544211  00  455555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.59  E-value=2.9e-06  Score=66.51  Aligned_cols=90  Identities=17%  Similarity=0.076  Sum_probs=62.6

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ...+++|+.|+|++|. ++.....+ ...+++|+.|.|+.+.+....    .   .+ ...+++|++|+|++|+|+...-
T Consensus        50 ~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----~---~~-~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQ-LTGIEPNA-FEGASHIQELQLGENKIKEIS----N---KM-FLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             GGGCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSCCCCEEC----S---SS-STTCTTCCEEECCSSCCCEECT
T ss_pred             cccCCCCCEEECCCCC-CCCcCHhH-cCCcccCCEEECCCCcCCccC----H---HH-hcCCCCCCEEECCCCcCCeeCH
Confidence            3578999999999984 55321122 245799999999877553111    1   11 2368999999999999775321


Q ss_pred             HHHHhCCCCccEEeeeCCCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v  110 (206)
                       ..+..+++|+.|+|+++...
T Consensus       120 -~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          120 -GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             -TSSTTCTTCCEEECTTCCBC
T ss_pred             -HHhhcCCCCCEEEeCCCCcc
Confidence             23457899999999998755

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.57  E-value=8.7e-06  Score=63.99  Aligned_cols=90  Identities=16%  Similarity=0.091  Sum_probs=62.6

Q ss_pred             HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ...+++|+.|+|++|. |+.....+ ...+++|+.|.|+.+.+...    ..   .+ ...+++|++|+|++|.|+.-. 
T Consensus        50 ~~~l~~L~~L~Ls~N~-i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i----~~---~~-f~~l~~L~~L~L~~N~l~~~~-  118 (193)
T 2wfh_A           50 LSNYKHLTLIDLSNNR-ISTLSNQS-FSNMTQLLTLILSYNRLRCI----PP---RT-FDGLKSLRLLSLHGNDISVVP-  118 (193)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCCCBC----CT---TT-TTTCTTCCEEECCSSCCCBCC-
T ss_pred             hhcccCCCEEECCCCc-CCEeCHhH-ccCCCCCCEEECCCCccCEe----CH---HH-hCCCCCCCEEECCCCCCCeeC-
Confidence            3468999999999974 55322112 24579999999987765321    11   11 237899999999999877421 


Q ss_pred             HHHHhCCCCccEEeeeCCCCC
Q 028616           90 LKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~C~~v  110 (206)
                      ...+..+++|+.|+|+++...
T Consensus       119 ~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          119 EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCEE
T ss_pred             hhhhhcCccccEEEeCCCCee
Confidence            123457899999999998765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.56  E-value=9.4e-06  Score=74.69  Aligned_cols=35  Identities=23%  Similarity=0.038  Sum_probs=14.5

Q ss_pred             hCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           94 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .++++|+.|+|+++....+.... ...+++|+.|.+
T Consensus       557 ~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L~~L~L  591 (680)
T 1ziw_A          557 KDLFELKIIDLGLNNLNTLPASV-FNNQVSLKSLNL  591 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEEC
T ss_pred             ccccCcceeECCCCCCCcCCHhH-hCCCCCCCEEEC
Confidence            34455555555444333222211 133455555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.55  E-value=1.1e-05  Score=67.97  Aligned_cols=14  Identities=7%  Similarity=0.128  Sum_probs=6.7

Q ss_pred             CCCCccEEeeeCCC
Q 028616           95 SCALLEFLDLRGCW  108 (206)
Q Consensus        95 ~c~~Le~LdL~~C~  108 (206)
                      ++++|+.|++++|.
T Consensus       145 ~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          145 GLRNMNCIEMGGNP  158 (332)
T ss_dssp             SCSSCCEEECCSCC
T ss_pred             CCccCCEEECCCCc
Confidence            44455555554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.52  E-value=3.3e-06  Score=71.23  Aligned_cols=39  Identities=23%  Similarity=0.237  Sum_probs=20.1

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      .+++|++|+|++|+++.  +-.-+..+++|+.|+|++|...
T Consensus       239 ~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             GCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCC
Confidence            45566666666665541  1111345566666666655433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.51  E-value=1.4e-06  Score=70.15  Aligned_cols=41  Identities=22%  Similarity=0.090  Sum_probs=25.1

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   52 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   52 (206)
                      ..+++|+.|+|++|..++.-... ....+++|+.|.++.+.+
T Consensus        77 ~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n~l  117 (239)
T 2xwt_C           77 YNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNTGL  117 (239)
T ss_dssp             ESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEECC
T ss_pred             CCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCCCC
Confidence            35788888888874455522111 223567888888876543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.47  E-value=2.4e-05  Score=72.23  Aligned_cols=88  Identities=11%  Similarity=0.064  Sum_probs=42.1

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCCh-HHHHHHH-----hcCCCCcEEEccCCcCC
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD-DEANAIA-----STMPKLKRLEMAYHVIS   85 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d-~~~~~ia-----~~~p~Lk~L~L~~~~it   85 (206)
                      ++++|+.|+|++|...+  .+......+++|+.|.++.+..      ++. .-...+.     ..+++|++|+|++|.++
T Consensus       247 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRG------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             GCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTT------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             ccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCC------CccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            46667777776664222  1111123456666666654420      122 1111121     12366666666666655


Q ss_pred             HHHHHH--HHhCCCCccEEeeeCCCC
Q 028616           86 TEIVLK--ILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        86 ~~~l~~--il~~c~~Le~LdL~~C~~  109 (206)
                        .+-.  .+.++++|+.|+|++|..
T Consensus       319 --~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          319 --TFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             --SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             --ccCchhhhccCCCCCEEeCcCCcC
Confidence              2322  344566666666666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.47  E-value=3.9e-05  Score=59.27  Aligned_cols=39  Identities=10%  Similarity=0.041  Sum_probs=19.6

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      .+++|++|+|++|+|+.-. ...+..+++|+.|+|+++..
T Consensus        79 ~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           79 KLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCB
T ss_pred             CcchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCCc
Confidence            4556666666666544211 11233456666666655543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=1.2e-05  Score=67.87  Aligned_cols=36  Identities=17%  Similarity=0.126  Sum_probs=20.1

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      ..+++.+.+.+.  +....+..+...|++|+.|.|+.+
T Consensus       201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n  236 (329)
T 3sb4_A          201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT  236 (329)
T ss_dssp             GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB
T ss_pred             ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC
Confidence            445555555542  455555556556666666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.34  E-value=2.2e-05  Score=60.39  Aligned_cols=86  Identities=12%  Similarity=-0.003  Sum_probs=44.4

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL   93 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il   93 (206)
                      ++|+.|+|++|. |+... ......+++|+.|.|+.+.+..    +...    +...+++|++|+|++|+|+.-. ...+
T Consensus        30 ~~l~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~l~~----l~~~----~f~~l~~L~~L~L~~N~l~~~~-~~~~   98 (170)
T 3g39_A           30 TTTQVLYLYDNQ-ITKLE-PGVFDRLTQLTRLDLDNNQLTV----LPAG----VFDKLTQLTQLSLNDNQLKSIP-RGAF   98 (170)
T ss_dssp             TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCC----CCTT----TTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred             CCCcEEEcCCCc-CCccC-hhhhcCcccCCEEECCCCCcCc----cChh----hccCCCCCCEEECCCCccCEeC-HHHh
Confidence            566777777653 33211 1112345667777776554421    1110    1235677777777777655311 1124


Q ss_pred             hCCCCccEEeeeCCCCC
Q 028616           94 SSCALLEFLDLRGCWDV  110 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~~v  110 (206)
                      .++++|+.|+|+++...
T Consensus        99 ~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTCTTCCEEECCSSCBC
T ss_pred             cCCCCCCEEEeCCCCCC
Confidence            45677777777766543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.30  E-value=3.8e-05  Score=72.21  Aligned_cols=85  Identities=20%  Similarity=0.097  Sum_probs=61.0

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++| .|+  .+..-...+++|+.|.|+.+.+.    .+..    .| ..+++|++|+|++|.|+.  +-.
T Consensus       245 ~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~----~lp~----~~-~~l~~L~~L~L~~N~l~~--lp~  310 (727)
T 4b8c_D          245 KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT----SLPA----EL-GSCFQLKYFYFFDNMVTT--LPW  310 (727)
T ss_dssp             GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS----SCCS----SG-GGGTTCSEEECCSSCCCC--CCS
T ss_pred             CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC----ccCh----hh-cCCCCCCEEECCCCCCCc--cCh
Confidence            5899999999997 465  33222356799999999877653    1111    12 378999999999998762  222


Q ss_pred             HHhCCCCccEEeeeCCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v  110 (206)
                      -+.++++|+.|+|++|...
T Consensus       311 ~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          311 EFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             STTSCTTCCCEECTTSCCC
T ss_pred             hhhcCCCccEEeCCCCccC
Confidence            2567899999999998755

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.28  E-value=0.00035  Score=64.07  Aligned_cols=10  Identities=20%  Similarity=0.135  Sum_probs=5.2

Q ss_pred             CCcEEEeccC
Q 028616           15 AVTFLDLSYC   24 (206)
Q Consensus        15 ~L~~L~Ls~c   24 (206)
                      +|+.|+|++|
T Consensus        60 ~L~~L~Ls~n   69 (571)
T 3cvr_A           60 QFSELQLNRL   69 (571)
T ss_dssp             TCSEEECCSS
T ss_pred             CccEEEeCCC
Confidence            4555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.14  E-value=9.1e-05  Score=56.80  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=68.1

Q ss_pred             CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616           15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS   94 (206)
Q Consensus        15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~   94 (206)
                      ..+.|+++++. ++.  +..  ...++|+.|.|+.+.+...    ..   . ....+++|++|+|++|+|+.-. ..++.
T Consensus        10 ~~~~l~~s~n~-l~~--ip~--~~~~~l~~L~L~~N~i~~~----~~---~-~~~~l~~L~~L~Ls~N~l~~l~-~~~f~   75 (170)
T 3g39_A           10 SGTTVDCSGKS-LAS--VPT--GIPTTTQVLYLYDNQITKL----EP---G-VFDRLTQLTRLDLDNNQLTVLP-AGVFD   75 (170)
T ss_dssp             ETTEEECTTSC-CSS--CCS--CCCTTCSEEECCSSCCCCC----CT---T-TTTTCTTCSEEECCSSCCCCCC-TTTTT
T ss_pred             CCCEEEeCCCC-cCc--cCc--cCCCCCcEEEcCCCcCCcc----Ch---h-hhcCcccCCEEECCCCCcCccC-hhhcc
Confidence            36789998863 442  111  1248899999987755321    11   1 1237899999999999977421 12346


Q ss_pred             CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ++++|+.|+|+++....+....+ ..+++|+.|.+..
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~  111 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAF-DNLKSLTHIWLLN  111 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCccCEeCHHHh-cCCCCCCEEEeCC
Confidence            89999999999997654444322 5678888888755

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.11  E-value=0.00012  Score=56.55  Aligned_cols=101  Identities=12%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             CcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhC
Q 028616           16 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSS   95 (206)
Q Consensus        16 L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~   95 (206)
                      -+.|+++++. ++.  +..  ...++|+.|.|+.+.+...    ..    .....+++|++|+|++|+|+.-. ..++.+
T Consensus        14 ~~~l~~~~n~-l~~--iP~--~~~~~L~~L~Ls~N~l~~~----~~----~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~   79 (174)
T 2r9u_A           14 QTLVNCQNIR-LAS--VPA--GIPTDKQRLWLNNNQITKL----EP----GVFDHLVNLQQLYFNSNKLTAIP-TGVFDK   79 (174)
T ss_dssp             SSEEECCSSC-CSS--CCS--CCCTTCSEEECCSSCCCCC----CT----TTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred             CcEEEeCCCC-CCc--cCC--CcCCCCcEEEeCCCCcccc----CH----HHhcCCcCCCEEECCCCCCCccC-hhHhCC
Confidence            4678888863 331  111  1238899999987755311    11    11237899999999999977521 123467


Q ss_pred             CCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           96 CALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        96 c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +++|+.|+|+++....+....+ ..+++|+.|.+..
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~~-~~l~~L~~L~L~~  114 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGAF-DNLKSLTHIYLYN  114 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCS
T ss_pred             cchhhEEECCCCccceeCHHHh-ccccCCCEEEeCC
Confidence            8999999999987664444322 5678888888754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.09  E-value=0.00042  Score=64.17  Aligned_cols=39  Identities=13%  Similarity=-0.021  Sum_probs=20.7

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      .+++|++|+|++|.|+  .+-..+.++++|+.|+|++|...
T Consensus       259 ~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          259 LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCC
Confidence            3455666666666555  12222445666666666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.97  E-value=0.00045  Score=63.34  Aligned_cols=13  Identities=8%  Similarity=-0.353  Sum_probs=5.9

Q ss_pred             CCCccEEeeeCCC
Q 028616           96 CALLEFLDLRGCW  108 (206)
Q Consensus        96 c~~Le~LdL~~C~  108 (206)
                      +++|+.|+|++|.
T Consensus       229 l~~L~~L~L~~N~  241 (571)
T 3cvr_A          229 LDPTCTIILEDNP  241 (571)
T ss_dssp             SCTTEEEECCSSS
T ss_pred             CCCCCEEEeeCCc
Confidence            4444444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=96.95  E-value=0.00039  Score=66.05  Aligned_cols=39  Identities=23%  Similarity=0.158  Sum_probs=20.8

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   52 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   52 (206)
                      .+++|+.|+|++|. ++.....+ ...+++|+.|.|+.+.+
T Consensus       336 ~l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          336 GLPKVAYIDLQKNH-IAIIQDQT-FKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             SCTTCCEEECCSCC-CCCCCSSC-SCSCCCCCEEEEETCCS
T ss_pred             CCCCCCEEECCCCC-CCccChhh-hcCCCCCCEEECCCCCC
Confidence            46677777777663 33211111 13456777777765543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.94  E-value=0.0014  Score=60.60  Aligned_cols=55  Identities=11%  Similarity=-0.046  Sum_probs=33.4

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|+|++|.|+.     |-..+++|+.|+|++|....+...  ...+++|+.|.+..
T Consensus       239 ~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~lp~~--l~~l~~L~~L~L~~  293 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEG  293 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCSCCGG--GGGSCTTCEEECCS
T ss_pred             CCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCcCCHH--HhhccccCEEEecC
Confidence            45667777777776552     112567777777777755433322  25677788777743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.91  E-value=8.1e-05  Score=62.89  Aligned_cols=89  Identities=18%  Similarity=0.076  Sum_probs=55.8

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|+++.+++.-.- .....+++|+.|.|+.+.+..    +...    ....+++|++|+|++|+|+.-. .
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~----~~~~----~~~~l~~L~~L~l~~N~l~~~~-~   97 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRF----VAPD----AFHFTPRLSRLNLSFNALESLS-W   97 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCE----ECTT----GGGSCSCCCEEECCSSCCSCCC-S
T ss_pred             CCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccce----eCHH----HhcCCcCCCEEeCCCCccceeC-H
Confidence            3567899999986334552211 122457899999998765421    1111    1237899999999999876321 1


Q ss_pred             HHHhCCCCccEEeeeCCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v  110 (206)
                      .++..++ |+.|+|.++...
T Consensus        98 ~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           98 KTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TTTCSCC-CCEEECCSSCCC
T ss_pred             HHcccCC-ceEEEeeCCCcc
Confidence            1233334 999999888755

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.61  E-value=0.0044  Score=54.75  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=16.4

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      ++|++|+|++|. ++.  +.. ...+++|+.|.++.+
T Consensus       131 ~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSS
T ss_pred             CCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCC
Confidence            456666666652 331  222 234555666665544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.56  E-value=0.00049  Score=57.91  Aligned_cols=110  Identities=19%  Similarity=0.148  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCc-EEEccC
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLK-RLEMAY   81 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk-~L~L~~   81 (206)
                      ...+..+...|++|+.|+|++|. ++.-+-. ....|++|+.|.|..+ +.    .+..   .++ ..|++|+ .|.|..
T Consensus       215 ~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~-aF~~~~~L~~l~l~~n-i~----~I~~---~aF-~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          215 NADFKLIRDYMPNLVSLDISKTN-ATTIPDF-TFAQKKYLLKIKLPHN-LK----TIGQ---RVF-SNCGRLAGTLELPA  283 (329)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTBC-CCEECTT-TTTTCTTCCEEECCTT-CC----EECT---TTT-TTCTTCCEEEEECT
T ss_pred             HHHHHHHHHhcCCCeEEECCCCC-cceecHh-hhhCCCCCCEEECCcc-cc----eehH---HHh-hCChhccEEEEEcc
Confidence            34455666679999999999853 4422221 2356889999988643 21    1121   122 3788999 999987


Q ss_pred             Cc--CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeC
Q 028616           82 HV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  128 (206)
Q Consensus        82 ~~--it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  128 (206)
                      .-  |...+    ..+|++|+.|++.+.....+....+ ..|++|+.+.
T Consensus       284 ~l~~I~~~a----F~~c~~L~~l~l~~n~i~~I~~~aF-~~~~~L~~ly  327 (329)
T 3sb4_A          284 SVTAIEFGA----FMGCDNLRYVLATGDKITTLGDELF-GNGVPSKLIY  327 (329)
T ss_dssp             TCCEECTTT----TTTCTTEEEEEECSSCCCEECTTTT-CTTCCCCEEE
T ss_pred             cceEEchhh----hhCCccCCEEEeCCCccCccchhhh-cCCcchhhhc
Confidence            31  43333    3589999999987665443344333 5678888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.34  E-value=0.00053  Score=57.82  Aligned_cols=100  Identities=14%  Similarity=-0.052  Sum_probs=63.1

Q ss_pred             EEEeccCCCCCHHHHHHHHhcCCCCceEEeec-ccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCC
Q 028616           18 FLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC   96 (206)
Q Consensus        18 ~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c   96 (206)
                      .+++++...++.  +.. ...+++|+.|.|+. +.+.    .+...    ....+++|++|+|++|+|+... ...+.++
T Consensus        12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~----~~~~~----~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l   79 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQ----HLELR----DLRGLGELRNLTIVKSGLRFVA-PDAFHFT   79 (347)
T ss_dssp             CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCC----EECGG----GSCSCCCCSEEECCSSCCCEEC-TTGGGSC
T ss_pred             EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCC----CcChh----HhccccCCCEEECCCCccceeC-HHHhcCC
Confidence            467766524542  444 45567899999974 6442    11111    1237899999999999877632 1234689


Q ss_pred             CCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           97 ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        97 ~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ++|+.|+|+++....+....+ ...+ |+.|.+..
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~-~~~~-L~~l~l~~  112 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTV-QGLS-LQELVLSG  112 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTT-CSCC-CCEEECCS
T ss_pred             cCCCEEeCCCCccceeCHHHc-ccCC-ceEEEeeC
Confidence            999999999987654443222 2222 77776643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.27  E-value=0.0086  Score=52.86  Aligned_cols=35  Identities=14%  Similarity=0.101  Sum_probs=17.5

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      .+++|++|++++|+++.     +-...++|++|++++|..
T Consensus       151 ~l~~L~~L~l~~N~l~~-----lp~~~~~L~~L~L~~n~l  185 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQL  185 (454)
T ss_dssp             TCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcCcc-----cCCCcccccEEECcCCcC
Confidence            45566666666665442     111234555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.01  E-value=0.0056  Score=53.43  Aligned_cols=13  Identities=23%  Similarity=0.007  Sum_probs=9.0

Q ss_pred             cCCCCcEEEeccC
Q 028616           12 RLSAVTFLDLSYC   24 (206)
Q Consensus        12 ~~~~L~~L~Ls~c   24 (206)
                      .|++|+.|+|+.+
T Consensus       178 ~c~~L~~l~l~~n  190 (401)
T 4fdw_A          178 YCYNLKKADLSKT  190 (401)
T ss_dssp             TCTTCCEEECTTS
T ss_pred             CcccCCeeecCCC
Confidence            4777777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=93.82  E-value=0.0066  Score=51.35  Aligned_cols=13  Identities=23%  Similarity=0.370  Sum_probs=9.1

Q ss_pred             cCCCCcEEEeccC
Q 028616           12 RLSAVTFLDLSYC   24 (206)
Q Consensus        12 ~~~~L~~L~Ls~c   24 (206)
                      .+++|+.|++++|
T Consensus       102 ~l~~L~~L~l~~n  114 (350)
T 4ay9_X          102 NLPNLQYLLISNT  114 (350)
T ss_dssp             CCTTCCEEEEEEE
T ss_pred             hcccccccccccc
Confidence            4677777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=92.76  E-value=0.0054  Score=51.89  Aligned_cols=86  Identities=12%  Similarity=0.033  Sum_probs=51.4

Q ss_pred             CCCcEEEeccCCCCCHHHHHH-HHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEE-EccCCcCCHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEA-IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRL-EMAYHVISTEIVLK   91 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~-l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L-~L~~~~it~~~l~~   91 (206)
                      ++|++|+|++| +|+.  +.. ....+++|+.|.|+.+.+..   .+...    ...++++|+++ .+.+|+|+.-. ..
T Consensus        30 ~~l~~L~Ls~N-~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~---~i~~~----~f~~L~~l~~~l~~~~N~l~~l~-~~   98 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRV--IQKGAFSGFGDLEKIEISQNDVLE---VIEAD----VFSNLPKLHEIRIEKANNLLYIN-PE   98 (350)
T ss_dssp             TTCSEEEEESC-CCSE--ECTTSSTTCTTCCEEEEECCTTCC---EECTT----SBCSCTTCCEEEEEEETTCCEEC-TT
T ss_pred             CCCCEEEccCC-cCCC--cCHHHHcCCCCCCEEECcCCCCCC---ccChh----HhhcchhhhhhhcccCCcccccC-ch
Confidence            57999999986 4652  211 12457899999998664310   01110    12366777764 44455555321 12


Q ss_pred             HHhCCCCccEEeeeCCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v  110 (206)
                      .+.++++|++|++++|...
T Consensus        99 ~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCS
T ss_pred             hhhhccccccccccccccc
Confidence            2467899999999988654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=92.42  E-value=0.016  Score=50.56  Aligned_cols=82  Identities=16%  Similarity=0.177  Sum_probs=35.8

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCC-CCCChHHHHHHHhcCCCCcEEEccCCc--CCHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD-KLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVL   90 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g-~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~l~   90 (206)
                      .+|+.|.|...  ++.-+-. ....|++|+.|.+..+.+.... ..+...   + ...|++|+.|.|..+-  |...+  
T Consensus       248 ~~L~~i~lp~~--i~~I~~~-aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---a-F~~c~~L~~l~l~~~i~~I~~~a--  318 (401)
T 4fdw_A          248 SGITTVKLPNG--VTNIASR-AFYYCPELAEVTTYGSTFNDDPEAMIHPY---C-LEGCPKLARFEIPESIRILGQGL--  318 (401)
T ss_dssp             CCCSEEEEETT--CCEECTT-TTTTCTTCCEEEEESSCCCCCTTCEECTT---T-TTTCTTCCEECCCTTCCEECTTT--
T ss_pred             CCccEEEeCCC--ccEEChh-HhhCCCCCCEEEeCCccccCCcccEECHH---H-hhCCccCCeEEeCCceEEEhhhh--
Confidence            45667766542  2211111 1245677777766533221000 001111   1 1256666666665321  22222  


Q ss_pred             HHHhCCCCccEEeeeC
Q 028616           91 KILSSCALLEFLDLRG  106 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~  106 (206)
                        ..+|++|+.|.|..
T Consensus       319 --F~~c~~L~~l~lp~  332 (401)
T 4fdw_A          319 --LGGNRKVTQLTIPA  332 (401)
T ss_dssp             --TTTCCSCCEEEECT
T ss_pred             --hcCCCCccEEEECc
Confidence              23566666666643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.17  E-value=0.0071  Score=52.02  Aligned_cols=32  Identities=19%  Similarity=0.452  Sum_probs=15.0

Q ss_pred             cCCCCcEEEccCCc--CCHHHHHHHHhCCCCccEEeee
Q 028616           70 TMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLR  105 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~--it~~~l~~il~~c~~Le~LdL~  105 (206)
                      .|++|+.+.|..+-  |...+    ..+|++|+.+.|.
T Consensus       318 ~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp  351 (394)
T 4fs7_A          318 SCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFP  351 (394)
T ss_dssp             TCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCC
T ss_pred             CCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEEC
Confidence            45556665554321  22222    2355566655554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.46  E-value=0.051  Score=46.59  Aligned_cols=100  Identities=13%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             cCCCCcEEEeccC-CCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHHH
Q 028616           12 RLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEI   88 (206)
Q Consensus        12 ~~~~L~~L~Ls~c-~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~   88 (206)
                      .|++|+.+.|... ..|...    ....|++|+.+.+... +.    .+..   .++ ..|.+|+.+.|..+-  |.+.+
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~-i~----~I~~---~aF-~~c~~L~~i~lp~~v~~I~~~a  329 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSR-IT----ELPE---SVF-AGCISLKSIDIPEGITQILDDA  329 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT-CC----EECT---TTT-TTCTTCCEEECCTTCCEECTTT
T ss_pred             ecccccEEecccccceecCc----ccccccccccccCCCc-cc----ccCc---eee-cCCCCcCEEEeCCcccEehHhH
Confidence            4677777777553 112211    1235677777766422 10    1111   112 366777777776541  33332


Q ss_pred             HHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           89 VLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        89 l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                          ..+|++|+.+.|-..-. .+...+ -..|.+|+.+.+.
T Consensus       330 ----F~~C~~L~~i~ip~sv~-~I~~~a-F~~C~~L~~i~~~  365 (394)
T 4gt6_A          330 ----FAGCEQLERIAIPSSVT-KIPESA-FSNCTALNNIEYS  365 (394)
T ss_dssp             ----TTTCTTCCEEEECTTCC-BCCGGG-GTTCTTCCEEEES
T ss_pred             ----hhCCCCCCEEEECcccC-EEhHhH-hhCCCCCCEEEEC
Confidence                24677777777743211 112222 2566777766553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.62  E-value=0.098  Score=44.76  Aligned_cols=98  Identities=16%  Similarity=0.164  Sum_probs=57.8

Q ss_pred             hcCCCCcEEEeccC-CCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHH
Q 028616           11 GRLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTE   87 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c-~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~   87 (206)
                      ..|++|+.+.+... ..|...+    ...|.+|+.+.|... +.    .+.+   .++ ..|.+|+++.|..+-  |...
T Consensus       285 ~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~-v~----~I~~---~aF-~~C~~L~~i~ip~sv~~I~~~  351 (394)
T 4gt6_A          285 MNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG-IT----QILD---DAF-AGCEQLERIAIPSSVTKIPES  351 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT-CC----EECT---TTT-TTCTTCCEEEECTTCCBCCGG
T ss_pred             ccccccccccCCCcccccCcee----ecCCCCcCEEEeCCc-cc----EehH---hHh-hCCCCCCEEEECcccCEEhHh
Confidence            35899999999753 2233222    357899999998632 21    1222   222 388999999997652  5444


Q ss_pred             HHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           88 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        88 ~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      +    ..+|++|+.+.+.+....    ......|..|+.+..
T Consensus       352 a----F~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i  385 (394)
T 4gt6_A          352 A----FSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPV  385 (394)
T ss_dssp             G----GTTCTTCCEEEESSCHHH----HHTCBCCCCC-----
T ss_pred             H----hhCCCCCCEEEECCceee----hhhhhccCCCCEEEe
Confidence            4    358999999999874321    111245666776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.41  E-value=0.034  Score=47.18  Aligned_cols=57  Identities=18%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             hcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCC-CCCCCChHHHHhcCCCCceeCC
Q 028616           69 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC-WDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        69 ~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C-~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      ..|++|+.+.+..+.|+.-+-. ...+|++|+.+.|... ..+  ...+. ..|.+|+.+.+
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~~i~lp~~l~~I--~~~aF-~~C~~L~~i~i  340 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPR-VFMDCVKLSSVTLPTALKTI--QVYAF-KNCKALSTISY  340 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEE--CTTTT-TTCTTCCCCCC
T ss_pred             ccccccccccccccccceehhh-hhcCCCCCCEEEcCccccEE--HHHHh-hCCCCCCEEEE
Confidence            3778888888877654432211 1357888988888532 222  22222 56777777765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=80.40  E-value=0.52  Score=34.23  Aligned_cols=37  Identities=11%  Similarity=-0.054  Sum_probs=21.7

Q ss_pred             CCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616           73 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        73 ~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v  110 (206)
                      +|++|+|++|+|+.-.- .++..+++|+.|+|+++...
T Consensus        32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence            57777777776544221 22345667777777766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.85
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.06
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.94
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.89
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.88
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.8
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.72
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.4
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.23
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.19
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.13
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.08
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.07
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.97
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.46
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.05
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	93.69

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.7e-16  Score=130.37  Aligned_cols=121  Identities=21%  Similarity=0.221  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHH-HHhcCCCCcEEEc
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEM   79 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~-ia~~~p~Lk~L~L   79 (206)
                      +++.++..++ ++|+|+.|+|++|..+|+.++.++++.||+|+.|+++.+.      .+++.++.. ++..+++|++|+|
T Consensus        83 l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~------~~~~~~~~~~~~~~~~~L~~L~l  155 (284)
T d2astb2          83 LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------DFTEKHVQVAVAHVSETITQLNL  155 (284)
T ss_dssp             CCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------TCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             CCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhcccccccccc------ccccccchhhhcccccccchhhh
Confidence            4677777776 5889999999999889999999999999999999887431      356666644 4455678888888


Q ss_pred             cCC--cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHH--HhcCCCCceeCCC
Q 028616           80 AYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNLKVLGPF  130 (206)
Q Consensus        80 ~~~--~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~~L~~L~~~  130 (206)
                      +++  .+++.++..++.+||+|++|+|++|..+  ++..+  ...+++|++|.+.
T Consensus       156 ~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i--td~~~~~l~~~~~L~~L~L~  208 (284)
T d2astb2         156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML--KNDCFQEFFQLNYLQHLSLS  208 (284)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC--CGGGGGGGGGCTTCCEEECT
T ss_pred             cccccccccccccccccccccccccccccccCC--CchhhhhhcccCcCCEEECC
Confidence            876  3888888888888888888888888877  44332  3567888888774

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.5e-16  Score=127.98  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616            2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY   81 (206)
Q Consensus         2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~   81 (206)
                      +...+..+..+|++|++|+|++| .+++.++.++++ |++|+.|+++.+.      .+++.++.+++.+||+|++|+|++
T Consensus        59 ~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~Ls~c~------~itd~~l~~l~~~~~~L~~L~ls~  130 (284)
T d2astb2          59 EVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCS------GFSEFALQTLLSSCSRLDELNLSW  130 (284)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCB------SCCHHHHHHHHHHCTTCCEEECCC
T ss_pred             CHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhc-CCCCcCccccccc------cccccccchhhHHHHhcccccccc
Confidence            34555556666666666666665 356666655543 5566666654321      345556666665666666666666


Q ss_pred             Cc-CCHHHHHH-HHhCCCCccEEeeeCCC-CCCCChHH---HHhcCCCCceeCC
Q 028616           82 HV-ISTEIVLK-ILSSCALLEFLDLRGCW-DVKLDDKF---MKGNFPNLKVLGP  129 (206)
Q Consensus        82 ~~-it~~~l~~-il~~c~~Le~LdL~~C~-~v~~~~~~---l~~~~~~L~~L~~  129 (206)
                      |. +++.++.. +...|++|+.|++++|. .+  ++..   +...||+|+.|.+
T Consensus       131 c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i--~~~~l~~l~~~~~~L~~L~L  182 (284)
T d2astb2         131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNL--QKSDLSTLVRRCPNLVHLDL  182 (284)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS--CHHHHHHHHHHCTTCSEEEC
T ss_pred             ccccccccchhhhcccccccchhhhccccccc--cccccccccccccccccccc
Confidence            53 66655543 33344566666666653 23  3332   2245566666555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.28  E-value=2.4e-11  Score=92.77  Aligned_cols=120  Identities=13%  Similarity=0.199  Sum_probs=94.4

Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCceEEeecccCCCCCCCCChHHHHHHHh---cCCCCcE
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKR   76 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~---~~p~Lk~   76 (206)
                      ++.+..|...+|+|++|+|+++..+++.++..+++   .+++|+.|.|+.+       .+++.++.+++.   ..+.|++
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-------~l~~~~~~~la~~L~~n~~L~~   76 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSPSLRV   76 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-------ccchhHHHHHhhhhhhcccccc
Confidence            35688899899999999999877799999888765   4678999999755       457888777764   4689999


Q ss_pred             EEccCCcCCHHHHHHHHh---CCCCccEEeeeCCCCCCCChHH---H---HhcCCCCceeCC
Q 028616           77 LEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKF---M---KGNFPNLKVLGP  129 (206)
Q Consensus        77 L~L~~~~it~~~l~~il~---~c~~Le~LdL~~C~~v~~~~~~---l---~~~~~~L~~L~~  129 (206)
                      |+|++|.|++.++..+++   .++.|++|+|+++....+....   +   ....+.|+.|+.
T Consensus        77 L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l  138 (167)
T d1pgva_          77 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  138 (167)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             eeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeC
Confidence            999999999999887755   4578999999988644334332   2   256788888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.1e-11  Score=101.67  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHH---hcCCCCceEEeecccCCCCCCCCChHHHHHHHhcC----CC
Q 028616            1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM----PK   73 (206)
Q Consensus         1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~---~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~----p~   73 (206)
                      |++.++..+.+.+++|++|+|++|. |++.++.+|+   +.|++|+.|.|+.+       .+++.++.+++..+    ++
T Consensus        14 i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-------~i~~~~~~~l~~~l~~~~~~   85 (460)
T d1z7xw1          14 LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-------ELGDVGVHCVLQGLQTPSCK   85 (460)
T ss_dssp             CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-------CCHHHHHHHHHHTTCSTTCC
T ss_pred             CChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-------cCChHHHHHHHHHHhcCCCC
Confidence            6788889999999999999999984 8998887776   67899999998765       45788888887654    57


Q ss_pred             CcEEEccCCcCCHHHHHHH---HhCCCCccEEeeeCCCC
Q 028616           74 LKRLEMAYHVISTEIVLKI---LSSCALLEFLDLRGCWD  109 (206)
Q Consensus        74 Lk~L~L~~~~it~~~l~~i---l~~c~~Le~LdL~~C~~  109 (206)
                      |++|+|++|.|++.++..+   ++.+++|++|+|++|.-
T Consensus        86 L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          86 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            9999999999988776655   45789999999988763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.15  E-value=3.5e-10  Score=85.67  Aligned_cols=118  Identities=19%  Similarity=0.157  Sum_probs=94.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcE
Q 028616            3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKR   76 (206)
Q Consensus         3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~   76 (206)
                      ++.+..+....|.|++|+|+++..+++.++.++++   .+++|++|+|+.+       .+++.++.+|+..   .++|+.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-------~l~~~~~~~L~~~l~~~~~l~~   78 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-------RSNDPVAFALAEMLKVNNTLKS   78 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-------CCCHHHHHHHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-------cccHHHHHHHHHHHhhcccchh
Confidence            45678888889999999999877899999998887   6789999999865       4578888877644   589999


Q ss_pred             EEccCCcCCHHHHHHHHh---CCCCccEEeeeCCC-CCCCChHH---H---HhcCCCCceeCC
Q 028616           77 LEMAYHVISTEIVLKILS---SCALLEFLDLRGCW-DVKLDDKF---M---KGNFPNLKVLGP  129 (206)
Q Consensus        77 L~L~~~~it~~~l~~il~---~c~~Le~LdL~~C~-~v~~~~~~---l---~~~~~~L~~L~~  129 (206)
                      |.+++|.+++.++..+++   .++.|+.+.|..|. .+  .+..   +   .+.++.|+.|..
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i--~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL--GNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC--CHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC--cHHHHHHHHHHHHhCCCcCEEeC
Confidence            999999999999887764   56889998887765 33  3322   2   257889999876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-10  Score=97.50  Aligned_cols=110  Identities=14%  Similarity=0.125  Sum_probs=89.0

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCCCcEEEccCCcCCHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ++|+.|+|++ .++++.++..+...+++|++|+|+.+       .+++.++.+|+   ..+|+|++|+|++|.|++.++.
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-------~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-------GLTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-------CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC-------CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            5799999976 68999999999999999999999866       46788887776   5789999999999999999999


Q ss_pred             HHHhCC----CCccEEeeeCCCCCCCChHHHH---hcCCCCceeCCCC
Q 028616           91 KILSSC----ALLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c----~~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~~~  131 (206)
                      .+++.+    ++|++|+|++|.-.......+.   ..++.|+.|.+..
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccc
Confidence            888754    5899999999963311222232   5678899988743

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=2.6e-09  Score=89.08  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=85.8

Q ss_pred             HHHhcCCCCcEEEeccCCCCCHHHHHHH----HhcCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCCCcEEEcc
Q 028616            8 QIAGRLSAVTFLDLSYCSKIGAPALEAI----GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMA   80 (206)
Q Consensus         8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l----~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~Lk~L~L~   80 (206)
                      ...+.+++|+.|+|++| .+++.++..+    ...+++|+.|.|+.+       .+++.++.+++   ..+++|++|+|+
T Consensus       180 ~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-------~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-------TFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             HHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-------CCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             chhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccc-------cccccccccccccccccccchhhhhh
Confidence            33456899999999998 5898876543    346899999999865       35677776665   467999999999


Q ss_pred             CCcCCHHHHHHHHhC-----CCCccEEeeeCCCCCCCChH-------HHHhcCCCCceeCCCC
Q 028616           81 YHVISTEIVLKILSS-----CALLEFLDLRGCWDVKLDDK-------FMKGNFPNLKVLGPFV  131 (206)
Q Consensus        81 ~~~it~~~l~~il~~-----c~~Le~LdL~~C~~v~~~~~-------~l~~~~~~L~~L~~~~  131 (206)
                      +|.|++.++..+++.     .+.|+.|+|++|. +  +..       .+..++++|++|.+..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i--~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-I--ELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-C--BHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCc-C--ChHHHHHHHHHHHccCCCCCEEECCC
Confidence            999999998888653     3679999999986 4  322       1235688999998744

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.88  E-value=1e-08  Score=85.29  Aligned_cols=88  Identities=24%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHH---hcCCCCceEEeecccCCCCCCCCChHHHHHHHhc-----CCCCcEEEccCCcC
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST-----MPKLKRLEMAYHVI   84 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~---~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~-----~p~Lk~L~L~~~~i   84 (206)
                      +++|+.|+|++| .++..|+.+++   +.|++|+.|.|+.+       .+++.++..|+..     .++|++|+|++|.|
T Consensus       214 ~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n-------~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         214 CQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-------LLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             CTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-------CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hhhhcccccccc-cccccccccccccccccccchhhhhhcC-------ccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            444555555443 24444444333   23444554444433       2344444444322     13445555555545


Q ss_pred             CHHHHHHHHh----CCCCccEEeeeCCC
Q 028616           85 STEIVLKILS----SCALLEFLDLRGCW  108 (206)
Q Consensus        85 t~~~l~~il~----~c~~Le~LdL~~C~  108 (206)
                      +..++..+.+    ++++|++|+|+++.
T Consensus       286 ~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         286 ELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             BHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             ChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            5444333332    34445555554444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.86  E-value=1.4e-08  Score=76.46  Aligned_cols=100  Identities=11%  Similarity=0.054  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHh---cCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCceEEeecccCCCCCCCCChHHHHHHHhc---C
Q 028616            1 MSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---M   71 (206)
Q Consensus         1 Isd~~l~~l~~---~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~   71 (206)
                      |++.++..++.   .+++|++|+|++| .+++.++.+|++   .+++|+.|.++.+       .+++.++.+++..   +
T Consensus        30 i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~-------~~~~~g~~~l~~~l~~~  101 (166)
T d1io0a_          30 IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-------FISGSGILALVEALQSN  101 (166)
T ss_dssp             CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-------CCCHHHHHHHHHGGGGC
T ss_pred             CCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc-------cccchhHHHHHHHHHhC
Confidence            56788877776   6899999999998 689998887765   4688999888654       5688999888754   4


Q ss_pred             CCCcEEEcc--CCcCCHHHHHHHH---hCCCCccEEeeeCCC
Q 028616           72 PKLKRLEMA--YHVISTEIVLKIL---SSCALLEFLDLRGCW  108 (206)
Q Consensus        72 p~Lk~L~L~--~~~it~~~l~~il---~~c~~Le~LdL~~C~  108 (206)
                      ++|+.+.|.  ++.+++.+..+|+   +.+++|+.|++..+.
T Consensus       102 ~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         102 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            889986665  5569998866664   489999999998754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.85  E-value=1.1e-08  Score=77.44  Aligned_cols=100  Identities=7%  Similarity=0.060  Sum_probs=78.8

Q ss_pred             CCHHHHHHHHh---cCCCCcEEEeccCCCCCHHHHHHHHh---cCCCCceEEeecccCCCCCCCCChHHHHHHHhcC---
Q 028616            1 MSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---   71 (206)
Q Consensus         1 Isd~~l~~l~~---~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---   71 (206)
                      |+++++..++.   .+++|++|+|++| .+++.++.++++   .+++|+.|.|+.+       .+++.++.+|+..+   
T Consensus        28 i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n-------~i~~~g~~~l~~aL~~n   99 (167)
T d1pgva_          28 VSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-------FLTPELLARLLRSTLVT   99 (167)
T ss_dssp             SCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-------BCCHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh-------hcchHHHHHHHHHHHhC
Confidence            46777776655   5788999999997 589988877664   5799999999866       46899999887666   


Q ss_pred             CCCcEEEccCCc---CCHHHH---HHHHhCCCCccEEeeeCCC
Q 028616           72 PKLKRLEMAYHV---ISTEIV---LKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        72 p~Lk~L~L~~~~---it~~~l---~~il~~c~~Le~LdL~~C~  108 (206)
                      +.|++|+|++++   +...++   ...++.++.|+.|+++.+.
T Consensus       100 ~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         100 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             CcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            779999999875   666664   4455668999999998764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.5e-09  Score=80.93  Aligned_cols=108  Identities=18%  Similarity=0.153  Sum_probs=62.2

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|. |+.  +..+ ..+++|+.|.++.+.+.    .+..    .+...+|+|++|+|++|+|+.-.-..
T Consensus        39 ~l~~L~~L~Ls~N~-i~~--l~~~-~~l~~L~~L~ls~N~i~----~l~~----~~~~~l~~L~~L~L~~N~i~~~~~l~  106 (162)
T d1a9na_          39 TLDQFDAIDFSDNE-IRK--LDGF-PLLRRLKTLLVNNNRIC----RIGE----GLDQALPDLTELILTNNSLVELGDLD  106 (162)
T ss_dssp             GTTCCSEEECCSSC-CCE--ECCC-CCCSSCCEEECCSSCCC----EECS----CHHHHCTTCCEEECCSCCCCCGGGGG
T ss_pred             ccccCCEEECCCCC-CCc--cCCc-ccCcchhhhhccccccc----CCCc----cccccccccccceecccccccccccc
Confidence            34555555555542 331  1111 33455555555544331    1111    13346788888888888877643333


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~  131 (206)
                      .++.||+|+.|++++|........  .+...+|+|+.|+...
T Consensus       107 ~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_         107 PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCC
Confidence            456788888888888876544432  2446788888887643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=3.5e-09  Score=76.70  Aligned_cols=104  Identities=23%  Similarity=0.336  Sum_probs=71.0

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|++|+|++| +++.  +..-...+++|+.|.++.+.+.    .+.     .+ ..+|+|++|++++|+|+.-...
T Consensus        17 ~~l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~i~----~l~-----~~-~~l~~L~~L~l~~N~i~~~~~~   83 (124)
T d1dcea3          17 EQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALE----NVD-----GV-ANLPRLQELLLCNNRLQQSAAI   83 (124)
T ss_dssp             GGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCC----CCG-----GG-TTCSSCCEEECCSSCCCSSSTT
T ss_pred             ccCCCCCEEECCCC-ccCc--chhhhhhhhccccccccccccc----ccC-----cc-ccccccCeEECCCCccCCCCCc
Confidence            46889999999987 4552  3222245799999999877552    111     23 3789999999999988764333


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCC--hHHHHhcCCCCcee
Q 028616           91 KILSSCALLEFLDLRGCWDVKLD--DKFMKGNFPNLKVL  127 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~--~~~l~~~~~~L~~L  127 (206)
                      ..+..||+|+.|+++++.-....  ...+.+.+|+|+.+
T Consensus        84 ~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          84 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             hhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            34568999999999887643222  23456778888775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.6e-08  Score=76.37  Aligned_cols=105  Identities=18%  Similarity=0.044  Sum_probs=76.4

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +.+|++|+|++| +|+.  ++.+...+++|+.|.|+.+.+..    +.     . ...+|+|++|+|++|+|+.-.- .+
T Consensus        17 ~~~lr~L~L~~n-~I~~--i~~~~~~l~~L~~L~Ls~N~i~~----l~-----~-~~~l~~L~~L~ls~N~i~~l~~-~~   82 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRK----LD-----G-FPLLRRLKTLLVNNNRICRIGE-GL   82 (162)
T ss_dssp             TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCE----EC-----C-CCCCSSCCEEECCSSCCCEECS-CH
T ss_pred             cCcCcEEECCCC-CCCc--cCccccccccCCEEECCCCCCCc----cC-----C-cccCcchhhhhcccccccCCCc-cc
Confidence            668999999997 4653  34456778999999999776531    11     1 2378999999999999775321 23


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ...+|+|+.|+|++|.-....+-.....+|+|+.|.+..
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~  121 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR  121 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred             cccccccccceeccccccccccccccccccccchhhcCC
Confidence            467999999999999865333322236789999998854

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.8e-08  Score=74.07  Aligned_cols=95  Identities=23%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616           30 PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  109 (206)
Q Consensus        30 ~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~  109 (206)
                      ..+..+...|++|+.|+|+.+.+..    +  ..+......+|+|+.|+|++|.|++-.-...++ ..+|+.|+++++.-
T Consensus        55 ~~l~~~~~~~~~L~~L~Ls~N~i~~----l--~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl  127 (162)
T d1koha1          55 ATLRIIEENIPELLSLNLSNNRLYR----L--DDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSL  127 (162)
T ss_dssp             HHHHHHHHHCTTCCCCCCCSSCCCC----C--SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTT
T ss_pred             hhhHHHHHhCCCCCEeeCCCccccC----C--chhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCc
Confidence            3455666778888888888775421    1  112223347888999999988877754444444 44688888888765


Q ss_pred             CCCC--hH----HHHhcCCCCceeCCCC
Q 028616          110 VKLD--DK----FMKGNFPNLKVLGPFV  131 (206)
Q Consensus       110 v~~~--~~----~l~~~~~~L~~L~~~~  131 (206)
                      ....  ..    .+.+.+|+|++|....
T Consensus       128 ~~~~~~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         128 SDTFRDQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             SSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred             CcCcccchhHHHHHHHHCCCCCEECcCC
Confidence            4221  11    3457888898887643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.39  E-value=1.1e-08  Score=79.65  Aligned_cols=114  Identities=21%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCC-C---------------CCCChHHHHHHHhcCCCCc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA-D---------------KLSQDDEANAIASTMPKLK   75 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~-g---------------~~v~d~~~~~ia~~~p~Lk   75 (206)
                      .+++|+.|+|++| +|+.  +..+ ..|++|+.|.|+.+.+..- +               ..++.  +..+ ..+++|+
T Consensus        46 ~L~~L~~L~Ls~n-~I~~--i~~l-~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~~-~~l~~L~  118 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSGI-EKLVNLR  118 (198)
T ss_dssp             HTTTCCEEECSEE-EESC--CCCH-HHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHHH-HHHHHSS
T ss_pred             cccccceeECccc-CCCC--cccc-cCCccccChhhcccccccccccccccccccccccccccccc--cccc-ccccccc
Confidence            4667777777765 2332  1112 2346677777765543211 0               11222  1223 3678999


Q ss_pred             EEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCC-----Ch----HHHHhcCCCCceeCCCCc
Q 028616           76 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL-----DD----KFMKGNFPNLKVLGPFVM  132 (206)
Q Consensus        76 ~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~-----~~----~~l~~~~~~L~~L~~~~~  132 (206)
                      +|+|++|+|+.-.-...+.++|+|+.|+|++|.....     ..    ..+...+|+|+.|.....
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I  184 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPV  184 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGG
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccC
Confidence            9999999998765555567899999999998753210     00    123477899999876543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.3e-07  Score=67.16  Aligned_cols=87  Identities=20%  Similarity=0.132  Sum_probs=42.3

Q ss_pred             HHHhcCCCCcEEEeccCCCCCH-HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616            8 QIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST   86 (206)
Q Consensus         8 ~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~   86 (206)
                      .+...+|+|++|+|++|. |+. .++....+.|++|+.|.|+.+.+.    .+  ..+.. . +.++|++|.+++|.|+.
T Consensus        59 ~~~~~~~~L~~L~Ls~N~-i~~l~~~~~~~~~l~~L~~L~Ls~N~i~----~l--~~l~~-l-~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELK----SE--RELDK-I-KGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSC-CCCCSGGGTHHHHSTTCCCCCCTTSCCC----CG--GGHHH-H-TTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCcc-ccCCchhHHHHhhCCcccccccccCccc----cc--hhhhh-h-hccccceeecCCCCcCc
Confidence            344456666666666653 332 233344455666666666544331    01  11111 1 33456666666665432


Q ss_pred             ------HHHHHHHhCCCCccEEe
Q 028616           87 ------EIVLKILSSCALLEFLD  103 (206)
Q Consensus        87 ------~~l~~il~~c~~Le~Ld  103 (206)
                            .....+.+.||+|+.||
T Consensus       130 ~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         130 TFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSHHHHHHHHHTTSTTCCEET
T ss_pred             CcccchhHHHHHHHHCCCCCEEC
Confidence                  23445555666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=1.3e-06  Score=62.59  Aligned_cols=99  Identities=15%  Similarity=0.039  Sum_probs=71.2

Q ss_pred             cEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCC
Q 028616           17 TFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC   96 (206)
Q Consensus        17 ~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c   96 (206)
                      |.|+|++| +++  .+..+ ..+++|+.|.++.+.+.    .+..    .+ ..+++|+.|++++|.|+.-.  . +..+
T Consensus         1 R~L~Ls~n-~l~--~l~~l-~~l~~L~~L~ls~N~l~----~lp~----~~-~~l~~L~~L~l~~N~i~~l~--~-~~~l   64 (124)
T d1dcea3           1 RVLHLAHK-DLT--VLCHL-EQLLLVTHLDLSHNRLR----ALPP----AL-AALRCLEVLQASDNALENVD--G-VANL   64 (124)
T ss_dssp             SEEECTTS-CCS--SCCCG-GGGTTCCEEECCSSCCC----CCCG----GG-GGCTTCCEEECCSSCCCCCG--G-GTTC
T ss_pred             CEEEcCCC-CCC--CCccc-ccCCCCCEEECCCCccC----cchh----hh-hhhhcccccccccccccccC--c-cccc
Confidence            57999997 455  22333 56799999999877653    2221    13 37899999999999987632  2 5689


Q ss_pred             CCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           97 ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        97 ~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      |+|+.|+++++.-.....-.....+++|+.|.+..
T Consensus        65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            99999999999765444322236789999998854

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=9.6e-07  Score=67.85  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=61.9

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|++++|...+-.+   + ..+++|+.|.++.+....    +  .   . ...+++|+.|.+++|+++.-.  
T Consensus        81 ~~l~~L~~L~l~~n~~~~~~~---l-~~l~~L~~L~l~~~~~~~----~--~---~-~~~l~~L~~L~l~~n~l~~~~--  144 (199)
T d2omxa2          81 KNLTKLVDILMNNNQIADITP---L-ANLTNLTGLTLFNNQITD----I--D---P-LKNLTNLNRLELSSNTISDIS--  144 (199)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG---G-TTCTTCSEEECCSSCCCC----C--G---G-GTTCTTCSEEECCSSCCCCCG--
T ss_pred             cCCcccccccccccccccccc---c-cccccccccccccccccc----c--c---c-cchhhhhHHhhhhhhhhcccc--
Confidence            468899999999875433222   2 457888888887553311    1  1   1 236777888888777765421  


Q ss_pred             HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                       -+.++++|+.|++.+|....+..   ...+++|+.|....
T Consensus       145 -~l~~~~~L~~L~l~~n~l~~l~~---l~~l~~L~~L~ls~  181 (199)
T d2omxa2         145 -ALSGLTSLQQLNFSSNQVTDLKP---LANLTTLERLDISS  181 (199)
T ss_dssp             -GGTTCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred             -cccccccccccccccccccCCcc---ccCCCCCCEEECCC
Confidence             24567777777777775442221   24567777776643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.89  E-value=5.6e-06  Score=63.35  Aligned_cols=99  Identities=20%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +++|+.|++++|. |+.  +..+ +.|++|+.|.++.+.+..    +.     .+ .++++|++|++++|.++.-.   .
T Consensus        39 l~~l~~L~l~~~~-i~~--l~~l-~~l~nL~~L~Ls~N~l~~----~~-----~l-~~l~~L~~L~l~~n~~~~~~---~  101 (199)
T d2omxa2          39 LDQVTTLQADRLG-IKS--IDGV-EYLNNLTQINFSNNQLTD----IT-----PL-KNLTKLVDILMNNNQIADIT---P  101 (199)
T ss_dssp             HTTCCEEECTTSC-CCC--CTTG-GGCTTCCEEECCSSCCCC----CG-----GG-TTCTTCCEEECCSSCCCCCG---G
T ss_pred             hcCCCEEECCCCC-CCC--cccc-ccCCCcCcCccccccccC----cc-----cc-cCCccccccccccccccccc---c
Confidence            5788888888874 442  2222 457888888887654321    11     12 37788888888887754422   1


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      +.++++|+.|++++|.......   ...+++|+.|....
T Consensus       102 l~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~  137 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSS  137 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCS
T ss_pred             cccccccccccccccccccccc---cchhhhhHHhhhhh
Confidence            4577888888888777653322   24567777777643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.88  E-value=6.4e-06  Score=64.01  Aligned_cols=98  Identities=19%  Similarity=0.079  Sum_probs=67.7

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      ..+.++.+.++.|.......    ...+++|+.|.++++.+.       ..  ..+ .++++|++|+|++|++++-.   
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~-------~~--~~l-~~l~~L~~L~Ls~n~l~~l~---  189 (227)
T d1h6ua2         127 GLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQVS-------DL--TPL-ANLSKLTTLKADDNKISDIS---  189 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCC-------CC--GGG-TTCTTCCEEECCSSCCCCCG---
T ss_pred             cccchhhhhchhhhhchhhh----hccccccccccccccccc-------cc--hhh-cccccceecccCCCccCCCh---
Confidence            47888999998874322222    356789999999765431       11  112 47899999999999887621   


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .+.+||+|++|+|++|.-..+.  . ...+++|+.|.+
T Consensus       190 ~l~~l~~L~~L~Ls~N~lt~i~--~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVTL  224 (227)
T ss_dssp             GGGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEEE
T ss_pred             hhcCCCCCCEEECcCCcCCCCc--c-cccCCCCCEEEe
Confidence            2578999999999999543222  1 367888888765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=2.3e-07  Score=71.12  Aligned_cols=107  Identities=15%  Similarity=0.044  Sum_probs=64.4

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL   93 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il   93 (206)
                      ++|+.|+|++| +|+...-......+++|+.|.|+.+.+..    +...    ....+++|++|+|++|+|+.-.- ...
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~----~~~~----~~~~~~~L~~L~Ls~N~l~~l~~-~~F   98 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTG----IEPN----AFEGASHIQELQLGENKIKEISN-KMF   98 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCC----BCTT----TTTTCTTCCEEECCSCCCCEECS-SSS
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeecccccccc----cccc----ccccccccceeeeccccccccCH-HHH
Confidence            57889999886 35432212233456889999887654421    1111    22366788888888887654221 124


Q ss_pred             hCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           94 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .++++|++|+|+++.-..+....+ ..+++|+.|.+..
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f-~~l~~L~~l~L~~  135 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLAS  135 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECTT
T ss_pred             hCCCcccccccCCccccccCHHHh-cCCcccccccccc
Confidence            577888888888876554333322 4567777777644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.80  E-value=1e-05  Score=62.76  Aligned_cols=100  Identities=16%  Similarity=0.124  Sum_probs=68.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|.+++|......+    ...++.++.+.++.+.+.       ..  .. ...+++|++|++++|.++...-  
T Consensus       105 ~l~~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~-------~~--~~-~~~~~~L~~L~l~~n~~~~~~~--  168 (227)
T d1h6ua2         105 GLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQIT-------NI--SP-LAGLTNLQYLSIGNAQVSDLTP--  168 (227)
T ss_dssp             TCTTCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCC-------CC--GG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             ccccccccccccccccccch----hccccchhhhhchhhhhc-------hh--hh-hccccccccccccccccccchh--
Confidence            68999999999885433222    234688888888654331       10  01 2378999999999998765322  


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                       +.+|++|+.|+|++|....+..   ...+++|+.|.+..
T Consensus       169 -l~~l~~L~~L~Ls~n~l~~l~~---l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         169 -LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKN  204 (227)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTT
T ss_pred             -hcccccceecccCCCccCCChh---hcCCCCCCEEECcC
Confidence             5689999999999986442221   36789999998854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.79  E-value=4.5e-06  Score=64.36  Aligned_cols=59  Identities=19%  Similarity=0.181  Sum_probs=40.0

Q ss_pred             CCCCceEEeecccCCCCCCCCChH-HHHHHHhcCCCCcEEEccCCcCCHHH---------HHHHHhCCCCccEEeee
Q 028616           39 CKLLVVLCRNMHPLDTADKLSQDD-EANAIASTMPKLKRLEMAYHVISTEI---------VLKILSSCALLEFLDLR  105 (206)
Q Consensus        39 c~~L~~L~L~~~~~~~~g~~v~d~-~~~~ia~~~p~Lk~L~L~~~~it~~~---------l~~il~~c~~Le~LdL~  105 (206)
                      +++|+.|.++.+.+       +.- .+..+ ..+|+|++|+|++|+++...         ...++..||+|+.||-.
T Consensus       114 l~~L~~L~L~~N~i-------~~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         114 LVNLRVLYMSNNKI-------TNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             HHHSSEEEESEEEC-------CCHHHHHHH-TTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cccccccccccchh-------ccccccccc-cCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            46677777765533       332 33344 48999999999999765432         23457789999999843

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.72  E-value=1.4e-05  Score=61.58  Aligned_cols=106  Identities=24%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCC---------------CCCCChHHHHHHHhcCCCCc
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA---------------DKLSQDDEANAIASTMPKLK   75 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~---------------g~~v~d~~~~~ia~~~p~Lk   75 (206)
                      ..+++|+.|++++| +++.  +..+ ..+++|+.|.++.+.+...               +..+++.  . ....+++|+
T Consensus        87 ~~l~~L~~L~l~~n-~i~~--l~~l-~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~--~-~~~~l~~L~  159 (210)
T d1h6ta2          87 ANLKNLGWLFLDEN-KVKD--LSSL-KDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--T-VLSRLTKLD  159 (210)
T ss_dssp             TTCTTCCEEECCSS-CCCC--GGGG-TTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCS
T ss_pred             ccCccccccccccc-cccc--cccc-ccccccccccccccccccccccccccccccccccccccccc--c-ccccccccc
Confidence            35889999999987 4653  3333 4478899998865433110               0111111  1 123567777


Q ss_pred             EEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           76 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        76 ~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      ++.+++|.++.-  . -+.++++|+.|+|++|.-..+.  . ...+++|+.|.+
T Consensus       160 ~l~l~~n~l~~i--~-~l~~l~~L~~L~Ls~N~i~~l~--~-l~~l~~L~~L~L  207 (210)
T d1h6ta2         160 TLSLEDNQISDI--V-PLAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLEL  207 (210)
T ss_dssp             EEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEE
T ss_pred             cccccccccccc--c-cccCCCCCCEEECCCCCCCCCh--h-hcCCCCCCEEEc
Confidence            777777766542  1 1456777777777776433221  1 245666666654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.69  E-value=1.4e-05  Score=65.73  Aligned_cols=56  Identities=23%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             hcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           69 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        69 ~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      ..+|+|++|+|++|+|+.-  .. +.+||+|++|+|++|....+..   ...+++|+.|.+.
T Consensus       326 ~~l~~L~~L~L~~n~l~~l--~~-l~~l~~L~~L~l~~N~l~~l~~---l~~l~~L~~L~L~  381 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSDV--SS-LANLTNINWLSAGHNQISDLTP---LANLTRITQLGLN  381 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECC
T ss_pred             ccCCCCCEEECCCCCCCCC--hh-HcCCCCCCEEECCCCcCCCChh---hccCCCCCEeeCC
Confidence            4678888888888877652  22 4568888888888776442221   2567777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.66  E-value=1e-05  Score=66.48  Aligned_cols=80  Identities=18%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|++++| +++.  +.. ...+++|++|.++.+.+.    .+.     .++ .+|+|++|+|++|+|+.-.  
T Consensus       304 ~~~~~l~~L~ls~n-~l~~--l~~-l~~l~~L~~L~L~~n~l~----~l~-----~l~-~l~~L~~L~l~~N~l~~l~--  367 (384)
T d2omza2         304 SNLKNLTYLTLYFN-NISD--ISP-VSSLTKLQRLFFANNKVS----DVS-----SLA-NLTNINWLSAGHNQISDLT--  367 (384)
T ss_dssp             GGCTTCSEEECCSS-CCSC--CGG-GGGCTTCCEEECCSSCCC----CCG-----GGG-GCTTCCEEECCSSCCCBCG--
T ss_pred             chhcccCeEECCCC-CCCC--Ccc-cccCCCCCEEECCCCCCC----CCh-----hHc-CCCCCCEEECCCCcCCCCh--
Confidence            46899999999997 4553  222 366899999999877542    111     243 7999999999999988532  


Q ss_pred             HHHhCCCCccEEeeeCC
Q 028616           91 KILSSCALLEFLDLRGC  107 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C  107 (206)
                       .+.++++|+.|+|+++
T Consensus       368 -~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 -PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGTTCTTCSEEECCCE
T ss_pred             -hhccCCCCCEeeCCCC
Confidence             2678999999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.59  E-value=2.3e-05  Score=60.37  Aligned_cols=98  Identities=15%  Similarity=0.072  Sum_probs=62.9

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +.+|+.|++++|. ++.  +..+ +.|++|+.|.++.+.+.    .+.     .+ ..+++|++|++++|+|+.-.   -
T Consensus        45 L~~L~~L~l~~~~-i~~--l~~l-~~l~~L~~L~L~~n~i~----~l~-----~~-~~l~~L~~L~l~~n~i~~l~---~  107 (210)
T d1h6ta2          45 LNSIDQIIANNSD-IKS--VQGI-QYLPNVTKLFLNGNKLT----DIK-----PL-ANLKNLGWLFLDENKVKDLS---S  107 (210)
T ss_dssp             HHTCCEEECTTSC-CCC--CTTG-GGCTTCCEEECCSSCCC----CCG-----GG-TTCTTCCEEECCSSCCCCGG---G
T ss_pred             hcCccEEECcCCC-CCC--chhH-hhCCCCCEEeCCCcccc----Ccc-----cc-ccCccccccccccccccccc---c
Confidence            4578888888874 432  1222 56788999988766442    111     12 36788899999888877522   2


Q ss_pred             HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616           93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  130 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  130 (206)
                      +.++++|+.|++++|......  . ...+++++.+...
T Consensus       108 l~~l~~L~~L~l~~~~~~~~~--~-l~~l~~l~~l~~~  142 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDIN--G-LVHLPQLESLYLG  142 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccc--c-ccccccccccccc
Confidence            567888888888888765322  2 2456666666553

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=1.6e-05  Score=63.36  Aligned_cols=101  Identities=19%  Similarity=0.098  Sum_probs=61.9

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL   93 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il   93 (206)
                      ++|++|+|++| +|+.-...++ ..+++|+.|.|+.+.+..    +.     .+ ..+++|++|+|++|+++..  ...+
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f-~~l~~L~~L~L~~N~l~~----l~-----~~-~~l~~L~~L~Ls~N~l~~~--~~~~   96 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRAELTK----LQ-----VD-GTLPVLGTLDLSHNQLQSL--PLLG   96 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTSCCCE----EE-----CC-SCCTTCCEEECCSSCCSSC--CCCT
T ss_pred             cCCCEEECcCC-cCCCcCHHHh-hccccccccccccccccc----cc-----cc-ccccccccccccccccccc--cccc
Confidence            47899999886 4553222222 457889999887664421    11     11 2678899999988886542  2245


Q ss_pred             hCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           94 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        94 ~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      .++++|+.|+++++.......... ...++++.|..
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~l  131 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYL  131 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCSSTT-TTCTTCCEEEC
T ss_pred             ccccccccccccccccceeecccc-ccccccccccc
Confidence            677888888888877653333222 34445555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=2.5e-05  Score=62.49  Aligned_cols=60  Identities=15%  Similarity=0.019  Sum_probs=38.4

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|++|.+++|+++... ...+.++++|+.|+++++.........+ ..+++|+.|.+..
T Consensus       175 ~l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~~~~~-~~~~~L~~L~l~~  234 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLND  234 (284)
T ss_dssp             TCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCS
T ss_pred             cccccchhhhhhccccccC-hhHhhhhhhccccccccccccccccccc-ccccccCEEEecC
Confidence            6677777777777655321 1234567788888887777665554443 5677787777643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=1.5e-05  Score=59.09  Aligned_cols=15  Identities=27%  Similarity=0.762  Sum_probs=7.5

Q ss_pred             cCCCCcEEEccCCcC
Q 028616           70 TMPKLKRLEMAYHVI   84 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~i   84 (206)
                      .+++|++|+|++|+|
T Consensus        78 ~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          78 FTPRLSRLNLSFNAL   92 (156)
T ss_dssp             SCSCCCEEECCSSCC
T ss_pred             ccccccceeccCCCC
Confidence            445555555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.19  E-value=1.2e-05  Score=60.99  Aligned_cols=89  Identities=16%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      ..+++|+.|+|+++. ++.... ......++|+.|.|+.+.+..    +...    ...++++|++|+|++|+|+.-.- 
T Consensus        51 ~~l~~L~~L~L~~N~-i~~~~~-~~~~~~~~L~~L~Ls~N~l~~----l~~~----~F~~l~~L~~L~L~~N~l~~i~~-  119 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQ-LTGIEP-NAFEGASHIQELQLGENKIKE----ISNK----MFLGLHQLKTLNLYDNQISCVMP-  119 (192)
T ss_dssp             GGCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCSCCCCE----ECSS----SSTTCTTCCEEECCSSCCCEECT-
T ss_pred             CCCceEeeeeccccc-cccccc-cccccccccceeeeccccccc----cCHH----HHhCCCcccccccCCccccccCH-
Confidence            468999999999974 442222 233456899999998776532    1111    12378999999999998765221 


Q ss_pred             HHHhCCCCccEEeeeCCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v  110 (206)
                      ..++++++|++|+|+++...
T Consensus       120 ~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         120 GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TSSTTCTTCCEEECTTCCBC
T ss_pred             HHhcCCcccccccccccccc
Confidence            12457899999999988754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.13  E-value=3.1e-05  Score=62.35  Aligned_cols=34  Identities=9%  Similarity=0.079  Sum_probs=17.9

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   50 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   50 (206)
                      .+++|+.|++++|. ++.-.    ...+++|+.|.++.+
T Consensus       148 ~l~~L~~l~l~~n~-l~~l~----~~~~~~L~~L~l~~n  181 (305)
T d1xkua_         148 GMKKLSYIRIADTN-ITTIP----QGLPPSLTELHLDGN  181 (305)
T ss_dssp             GCTTCCEEECCSSC-CCSCC----SSCCTTCSEEECTTS
T ss_pred             cccccCccccccCC-ccccC----cccCCccCEEECCCC
Confidence            46667777777653 32100    123466666666533

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00011  Score=58.09  Aligned_cols=59  Identities=19%  Similarity=0.081  Sum_probs=33.8

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+++|+.|++++|+|+.... ..+..+++|++|+|+++.-..+....  ...++|+.|.+..
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~lp~~~--~~~~~L~~L~L~~  204 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFLHG  204 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT--TTTCCCSEEECCS
T ss_pred             ccccchhcccccccccccCc-cccccccccceeecccCCCcccChhH--CCCCCCCEEEecC
Confidence            45677777777776554322 22346777777777777644333222  2356666666643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=3.3e-05  Score=61.75  Aligned_cols=108  Identities=18%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      .+++|+.|+|++|.. +.. .......+++|+.+.++.+.+..    +...    +...+++|++|+|++|.|+.-.- .
T Consensus       103 ~l~~L~~L~l~~n~~-~~~-~~~~~~~~~~L~~l~l~~N~l~~----i~~~----~f~~~~~L~~L~l~~N~l~~l~~-~  171 (284)
T d1ozna_         103 GLGRLHTLHLDRCGL-QEL-GPGLFRGLAALQYLYLQDNALQA----LPDD----TFRDLGNLTHLFLHGNRISSVPE-R  171 (284)
T ss_dssp             TCTTCCEEECTTSCC-CCC-CTTTTTTCTTCCEEECCSSCCCC----CCTT----TTTTCTTCCEEECCSSCCCEECT-T
T ss_pred             ccccCCEEecCCccc-ccc-cccccchhcccchhhhccccccc----cChh----HhccccchhhcccccCcccccch-h
Confidence            467788888877642 211 11233446777777776554421    1111    12367888899998888664222 2


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      ...++++|+.|++.+|.........+ ..+++|+.|....
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f-~~l~~L~~L~l~~  210 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFA  210 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCS
T ss_pred             hhccccccchhhhhhccccccChhHh-hhhhhcccccccc
Confidence            34578889999888887664443332 5567788877744

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.97  E-value=0.00012  Score=58.73  Aligned_cols=85  Identities=14%  Similarity=0.099  Sum_probs=43.9

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      +++|+.|++++|. ++..... ....+++++.|.++.+.+..       .....+ ..+++|+.|+|++|+|+.-  -.-
T Consensus       170 ~~~L~~L~l~~n~-~~~~~~~-~~~~~~~l~~L~~s~n~l~~-------~~~~~~-~~l~~L~~L~L~~N~L~~l--p~~  237 (305)
T d1xkua_         170 PPSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFNSISA-------VDNGSL-ANTPHLRELHLNNNKLVKV--PGG  237 (305)
T ss_dssp             CTTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSSCCCE-------ECTTTG-GGSTTCCEEECCSSCCSSC--CTT
T ss_pred             CCccCEEECCCCc-CCCCChh-Hhhccccccccccccccccc-------cccccc-cccccceeeeccccccccc--ccc
Confidence            5667777776653 2222112 22445667777665443311       001111 2567777777777765531  111


Q ss_pred             HhCCCCccEEeeeCCCC
Q 028616           93 LSSCALLEFLDLRGCWD  109 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~  109 (206)
                      +..+++|+.|+|++|.-
T Consensus       238 l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         238 LADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             TTTCSSCCEEECCSSCC
T ss_pred             cccccCCCEEECCCCcc
Confidence            34567777777777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.56  E-value=4.6e-05  Score=61.59  Aligned_cols=38  Identities=24%  Similarity=0.169  Sum_probs=17.1

Q ss_pred             cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616           70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  108 (206)
Q Consensus        70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~  108 (206)
                      ++++|++|+|++|+++... ......+++|+.|+++++.
T Consensus        99 ~L~~L~~L~Ls~N~l~~~~-~~~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_          99 KLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             GCTTCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSSE
T ss_pred             cccccchhhhccccccccc-cccccchhhhccccccccc
Confidence            4555555555555433211 1122344555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.51  E-value=0.00071  Score=54.04  Aligned_cols=89  Identities=20%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL   93 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il   93 (206)
                      .+|++|+|+++. +|     .|....++|+.|.++++.+..    +.        ..+++|++|++++|.++.-      
T Consensus        38 ~~l~~LdLs~~~-L~-----~lp~~~~~L~~L~Ls~N~l~~----lp--------~~~~~L~~L~l~~n~l~~l------   93 (353)
T d1jl5a_          38 RQAHELELNNLG-LS-----SLPELPPHLESLVASCNSLTE----LP--------ELPQSLKSLLVDNNNLKAL------   93 (353)
T ss_dssp             HTCSEEECTTSC-CS-----CCCSCCTTCSEEECCSSCCSS----CC--------CCCTTCCEEECCSSCCSCC------
T ss_pred             cCCCEEEeCCCC-CC-----CCCCCCCCCCEEECCCCCCcc----cc--------cchhhhhhhhhhhcccchh------
Confidence            578899998864 54     223456889999888665431    11        1235666666666654421      


Q ss_pred             hCC-CCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616           94 SSC-ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  129 (206)
Q Consensus        94 ~~c-~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  129 (206)
                      ..+ +.|++|++++|....+..   ...+++|+.|..
T Consensus        94 ~~lp~~L~~L~L~~n~l~~lp~---~~~l~~L~~L~l  127 (353)
T d1jl5a_          94 SDLPPLLEYLGVSNNQLEKLPE---LQNSSFLKIIDV  127 (353)
T ss_dssp             CSCCTTCCEEECCSSCCSSCCC---CTTCTTCCEEEC
T ss_pred             hhhccccccccccccccccccc---hhhhccceeecc
Confidence            122 346666666655332221   123445555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.46  E-value=5.2e-05  Score=61.25  Aligned_cols=90  Identities=20%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL   90 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~   90 (206)
                      .++++|+.|+|++|..++..--..+ ..+++|+.|.|+.+.+...    ..    .....+++|+++.+++|.++.. +-
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~----~~----~~~~~~~~L~~l~l~~N~~~~~-~p  142 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGA----IP----DFLSQIKTLVTLDFSYNALSGT-LP  142 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEE----CC----GGGGGCTTCCEEECCSSEEESC-CC
T ss_pred             hcCcccccccccccccccccccccc-ccccccchhhhcccccccc----cc----ccccchhhhccccccccccccc-Cc
Confidence            3689999999987544432111233 3478999999987654211    11    1234789999999999874322 11


Q ss_pred             HHHhCCCCccEEeeeCCCCC
Q 028616           91 KILSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        91 ~il~~c~~Le~LdL~~C~~v  110 (206)
                      .-+.++++|+.|+++++...
T Consensus       143 ~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         143 PSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCE
T ss_pred             hhhccCcccceeeccccccc
Confidence            22568999999999998754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.14  E-value=0.0018  Score=51.56  Aligned_cols=77  Identities=14%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI   92 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i   92 (206)
                      .|+|++|+|++| +|+     .+....++|+.|.+..+.+.    .+.        .-.++|++|+|++|.|+.-.  . 
T Consensus        57 ~~~L~~L~Ls~N-~l~-----~lp~~~~~L~~L~l~~n~l~----~l~--------~lp~~L~~L~L~~n~l~~lp--~-  115 (353)
T d1jl5a_          57 PPHLESLVASCN-SLT-----ELPELPQSLKSLLVDNNNLK----ALS--------DLPPLLEYLGVSNNQLEKLP--E-  115 (353)
T ss_dssp             CTTCSEEECCSS-CCS-----SCCCCCTTCCEEECCSSCCS----CCC--------SCCTTCCEEECCSSCCSSCC--C-
T ss_pred             CCCCCEEECCCC-CCc-----ccccchhhhhhhhhhhcccc----hhh--------hhcccccccccccccccccc--c-
Confidence            579999999976 566     23345679999999766442    121        12257999999999876422  2 


Q ss_pred             HhCCCCccEEeeeCCCCC
Q 028616           93 LSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v  110 (206)
                      ...+++|+.|++++|...
T Consensus       116 ~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         116 LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CTTCTTCCEEECCSSCCS
T ss_pred             hhhhccceeecccccccc
Confidence            357899999999988654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0007  Score=49.56  Aligned_cols=105  Identities=13%  Similarity=-0.028  Sum_probs=66.1

Q ss_pred             CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc-CCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616           13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP-LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK   91 (206)
Q Consensus        13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~-~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~   91 (206)
                      |...+.++.++...++  .+..+ ...++|+.|.+..++ +.    .+...   ++ ..+++|+.|+|++|+|+.-.- .
T Consensus         7 c~~~~~l~c~~~~~~~--~p~~l-~~l~~l~~L~l~~n~~l~----~i~~~---~f-~~l~~L~~L~Ls~N~l~~i~~-~   74 (156)
T d2ifga3           7 PHGSSGLRCTRDGALD--SLHHL-PGAENLTELYIENQQHLQ----HLELR---DL-RGLGELRNLTIVKSGLRFVAP-D   74 (156)
T ss_dssp             CSSSSCEECCSSCCCT--TTTTS-CSCSCCSEEECCSCSSCC----EECGG---GS-CSCCCCSEEECCSSCCCEECT-T
T ss_pred             cCCCCeEEecCCCCcc--Ccccc-cCccccCeeecCCCcccc----ccCch---hh-ccccccCcceeeccccCCccc-c
Confidence            5566778877754322  12222 345789999885332 32    12221   22 378999999999998765432 2


Q ss_pred             HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616           92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  131 (206)
Q Consensus        92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  131 (206)
                      .+.++++|+.|+|+++....+....+  ...+|+.|.+..
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~~l~~~~~--~~~~l~~L~L~~  112 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALESLSWKTV--QGLSLQELVLSG  112 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCSTTT--CSCCCCEEECCS
T ss_pred             cccccccccceeccCCCCcccChhhh--ccccccccccCC
Confidence            34689999999999998775555443  233577776643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.00084  Score=51.58  Aligned_cols=87  Identities=11%  Similarity=0.023  Sum_probs=54.2

Q ss_pred             CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC-cCCHHHHHHH
Q 028616           14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH-VISTEIVLKI   92 (206)
Q Consensus        14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~-~it~~~l~~i   92 (206)
                      ++|+.|+|+++ +|+.-.-.+ ...+++|+.|.++.+.+..   .+..   . ....++++++|.+..+ .++.... ..
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~-f~~l~~L~~L~ls~n~~~~---~i~~---~-~f~~l~~l~~l~~~~~n~l~~~~~-~~   98 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGA-FSGFGDLEKIEISQNDVLE---VIEA---D-VFSNLPKLHEIRIEKANNLLYINP-EA   98 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTT-TTTCTTCCEEEEESCTTCC---EECS---S-SEESCTTCCEEEEECCTTCCEECT-TS
T ss_pred             CCCCEEECcCC-cCCccChhH-hhccchhhhhhhccccccc---eeec---c-cccccccccccccccccccccccc-cc
Confidence            48999999986 465211112 2557999999997654311   0110   0 1236789999988764 3444322 23


Q ss_pred             HhCCCCccEEeeeCCCCC
Q 028616           93 LSSCALLEFLDLRGCWDV  110 (206)
Q Consensus        93 l~~c~~Le~LdL~~C~~v  110 (206)
                      +.++++|+.|+++++...
T Consensus        99 ~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccchhhhc
Confidence            468899999999998654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.00081  Score=51.69  Aligned_cols=87  Identities=9%  Similarity=-0.017  Sum_probs=50.4

Q ss_pred             hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeec-ccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616           11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV   89 (206)
Q Consensus        11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l   89 (206)
                      ..+++|+.|+|++|...+.-.. .....+++++.|.+.. +.+..    +..   . ....+++|++|.++++.++....
T Consensus        50 ~~l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~~n~l~~----~~~---~-~~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          50 SGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLY----INP---E-AFQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             TTCTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEECCTTCCE----ECT---T-SEECCTTCCEEEEESCCCCSCCC
T ss_pred             hccchhhhhhhccccccceeec-cccccccccccccccccccccc----ccc---c-cccccccccccccchhhhccccc
Confidence            4689999999999854321111 1124578899988753 22211    111   1 12478999999999998765433


Q ss_pred             HHHHhCCCCccEEeeeC
Q 028616           90 LKILSSCALLEFLDLRG  106 (206)
Q Consensus        90 ~~il~~c~~Le~LdL~~  106 (206)
                      .......+.|..+...+
T Consensus       121 ~~~~~~l~~l~~~~~~n  137 (242)
T d1xwdc1         121 VHKIHSLQKVLLDIQDN  137 (242)
T ss_dssp             CTTTCBSSCEEEEEESC
T ss_pred             ccccccccccccccccc
Confidence            33333444554444443