Citrus Sinensis ID: 028624

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHHccEEEEcccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccEEEcccEEEccEEcccccccHHHHHHccccHHHccEEEEEEccccccccHHHHHHHHHHHHHHHHHEEEEcccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkhnnvipnghfkKHWQNYVKTWfnqparknrRRVARQKKAVkifprptagplrpvvhgqtlkynmklragrgftleelkaagipkklaptigvsvdhrrknrslegLQSNVQRLKTYKAklvvfprrarkfkagdsapeelatatqvqgpympitlekptVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEKK
Flexible Loop (DISEMBL)
mkhnnvipnghfkkhwqNYVKTWfnqparknrrrVARQkkavkifprptagplrpvvhgqtLKYNMKLRAGRGFTLEELkaagipkklaptigvsvdhrrknrsleglqsnvqrlktykaklvvfprrarkfkagdsapeelatatqvqgpympITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAaeaekeekk
Low Complexity Region (SEG)
MKHNNVIPNGHFKKHWQNYVKTWFNQParknrrrvarqkkavkIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLkkaaeaekeekk
Disordered region (IsUnstruct)
******IPNGHFKKHWQNYVKTWFNQP*************AVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSV***************VQRLKTYKAKLVVFPRRA******************VQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRI************************
Disordered Region (DISOPRED)
**HNNVIPNGHFKKHWQNYVKTWFNQ*****************IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVF*********************QVQGPYMPI********************AYDKLRIERANERHFGARLK***********
Disordered Region (DISEMBL)
MKHNNVIPNGHFKKHWQNYVKTWFNQPA**********KKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR*************
Disordered Region (DISPRO)
****NVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRA**********EELAT*T**QGPYMPITL*******VKVTQDMKSFKAYDKLRIERANERHFGARLKKAAE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
P41129	206	60S ribosomal protein L13	N/A	no	1.0	1.0	0.849	1e-101
P41128	206	60S ribosomal protein L13	N/A	no	1.0	1.0	0.844	1e-100
P41127	206	60S ribosomal protein L13	yes	no	0.927	0.927	0.848	2e-95
Q9FF90	206	60S ribosomal protein L13	no	no	0.902	0.902	0.844	2e-91
Q9SMT4	206	Putative 60S ribosomal pr	no	no	0.932	0.932	0.776	6e-85
P49627	202	60S ribosomal protein L13	N/A	no	0.912	0.930	0.734	2e-77
O48513	208	60S ribosomal protein L13	N/A	no	0.995	0.985	0.589	5e-62
P41126	218	60S ribosomal protein L13	yes	no	0.985	0.931	0.558	3e-58
Q90Z10	211	60S ribosomal protein L13	yes	no	0.975	0.952	0.597	6e-57
Q90YV5	211	60S ribosomal protein L13	N/A	no	0.975	0.952	0.567	4e-54

>sp|P41129|RL132_BRANA 60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 189/206 (91%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPTAGPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  ++LVK+T +MKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N+RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

Brassica napus (taxid: 3708)

>sp|P41128|RL131_BRANA 60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/206 (84%), Positives = 189/206 (91%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPTAGPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   +LVK+T +MKS KA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKI 180

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N+RH GAR K+AA+AEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRAADAEKEEKK 206

Brassica napus (taxid: 3708)

>sp|P41127|RL131_ARATH 60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1

 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/191 (84%), Positives = 179/191 (93%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 RIERANERHFG 191
           R+ER N+RH G
Sbjct: 181 RLERTNKRHAG 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF90|RL133_ARATH 60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1

 Score =  334 bits (857), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 157/186 (84%), Positives = 172/186 (92%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 RIERAN 186
           R+ER N
Sbjct: 181 RLERTN 186

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMT4|RL132_ARATH Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1

 Score =  313 bits (802), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 149/192 (77%), Positives = 165/192 (85%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIPNGHFKK W+NYVKT FNQPA K RRR+ARQ KAVKIFPRPTAGP+RPVVH Q
Sbjct: 1   MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKA
Sbjct: 61  TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+
Sbjct: 121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query: 181 RIERANERHFGA 192
           R+E  N+RH G 
Sbjct: 181 RLEGINKRHAGV 192

Arabidopsis thaliana (taxid: 3702)

>sp|P49627|RL13_TOBAC 60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1

 Score =  288 bits (737), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 157/188 (83%)

Query: 9   NGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKL 68
           NGHFKKHWQNYVKTWFNQPARK RRR+ARQKKAVKI PRPTAG LRP+VHGQTLKYNMK+
Sbjct: 5   NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKV 64

Query: 69  RAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR 128
           R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRR
Sbjct: 65  RSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRR 124

Query: 129 ARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANER 188
           A + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NER
Sbjct: 125 ASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNER 184

Query: 189 HFGARLKK 196
           H GAR+K+
Sbjct: 185 HIGARMKR 192

Nicotiana tabacum (taxid: 4097)

>sp|O48513|RL13_CHLSW 60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1

 Score =  237 bits (604), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/207 (58%), Positives = 156/207 (75%), Gaps = 2/207 (0%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           ++ N+++PNGHF K WQ +VKTWFNQPARK RRR AR +KA   FPRP AG L+P+V  Q
Sbjct: 2   VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           T+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A
Sbjct: 62  TVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
            LV+FPR  +K KA +++  + + A+Q +G  +P+   KP ++LVK+T DMK    Y KL
Sbjct: 122 SLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKL 181

Query: 181 RIERANERHFGARLKKAAE--AEKEEK 205
           RIER N R  G R K+AA+  A+K++K
Sbjct: 182 RIERVNARLKGMREKRAADEAAKKDDK 208

Chlamydomonas sp. (strain W80) (taxid: 103365)

>sp|P41126|RL13_DROME 60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=2 SV=1

 Score =  224 bits (571), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 114/204 (55%), Positives = 145/204 (71%), Gaps = 1/204 (0%)

Query: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQT 61
           K NN+IPN H+ K WQ +VKTWFNQPARK RR   R KKA  +FPRP +G LRPVV   T
Sbjct: 3   KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPT 62

Query: 62  LKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAK 121
           ++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RRKN+SLE  Q N+QRLK Y++K
Sbjct: 63  IRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSK 122

Query: 122 LVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP-TVDLVKVTQDMKSFKAYDKL 180
           L++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  V+  +VT+D K FKA+  L
Sbjct: 123 LILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATL 182

Query: 181 RIERANERHFGARLKKAAEAEKEE 204
           R  R + R  G R K+A EA + E
Sbjct: 183 RKARTDARLVGIRAKRAKEAAESE 206

Drosophila melanogaster (taxid: 7227)

>sp|Q90Z10|RL13_DANRE 60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3

 Score =  220 bits (560), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 147/201 (73%)

Query: 4   NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
           N +I N HF K WQ  V+TWFNQPARK RRR ARQ KA +I PRP +GPLRPVV   T++
Sbjct: 6   NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIR 65

Query: 64  YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
           Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL+
Sbjct: 66  YHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLI 125

Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
           +FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ 
Sbjct: 126 IFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMA 185

Query: 184 RANERHFGARLKKAAEAEKEE 204
           RAN R FG R K+A EA +++
Sbjct: 186 RANARLFGIRAKRAKEAAEQD 206

Danio rerio (taxid: 7955)

>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 143/201 (71%)

Query: 4   NNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLK 63
           N +I N HF K WQ  V+TWFNQPARK RRR ARQ KA +I PRP AGPLRP+V   T++
Sbjct: 6   NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVR 65

Query: 64  YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
           YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL+
Sbjct: 66  YNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLI 125

Query: 124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
           +FPR+    K GDS  EE+  ATQ+ GP MPI +         +T++ K F A+  LR+ 
Sbjct: 126 LFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMA 185

Query: 184 RANERHFGARLKKAAEAEKEE 204
           RAN R FG R K+A EA +++
Sbjct: 186 RANARLFGIRAKRAKEAAEQD 206

Ictalurus punctatus (taxid: 7998)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
225449778	207	PREDICTED: 60S ribosomal protein L13-2 [	1.0	0.995	0.873	1e-103
147845490	207	hypothetical protein VITISV_025451 [Viti	1.0	0.995	0.873	1e-102
192912994	207	60S ribosomal protein L13E [Elaeis guine	1.0	0.995	0.859	1e-102
356508216	207	PREDICTED: 60S ribosomal protein L13-2-l	1.0	0.995	0.859	1e-101
297819516	206	ATBBC1 [Arabidopsis lyrata subsp. lyrata	1.0	1.0	0.849	1e-101
449458303	206	PREDICTED: 60S ribosomal protein L13-2-l	1.0	1.0	0.854	1e-100
224138542	218	predicted protein [Populus trichocarpa]	0.970	0.917	0.87	1e-100
217071178	207	unknown [Medicago truncatula] gi|3885082	1.0	0.995	0.859	1e-100
356559071	207	PREDICTED: 60S ribosomal protein L13-2-l	1.0	0.995	0.859	1e-100
255576756	207	60S ribosomal protein L13, putative [Ric	0.941	0.937	0.896	1e-100

>gi|225449778|ref|XP_002274000.1| PREDICTED: 60S ribosomal protein L13-2 [Vitis vinifera] gi|296085355|emb|CBI29087.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/206 (87%), Positives = 193/206 (93%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNV+PNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPT GPLRP+VHGQ
Sbjct: 2   VKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTVGPLRPLVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAGRGF+LEELKAAGIPKKLAPTIG+SVDHRRKNRSLE LQ+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRRARKFKAGDSAPEEL TATQVQG YMP+  EKP V+LVKVT +MKSFKAY KL
Sbjct: 122 KLVVFPRRARKFKAGDSAPEELGTATQVQGQYMPVVQEKPVVELVKVTDEMKSFKAYGKL 181

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER NERH G R+KKAAEAEKE+KK
Sbjct: 182 RVERMNERHVGVRMKKAAEAEKEDKK 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845490|emb|CAN80613.1| hypothetical protein VITISV_025451 [Vitis vinifera]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/206 (87%), Positives = 193/206 (93%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNV+PNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPT GPLRP+VHGQ
Sbjct: 2   VKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTVGPLRPLVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAGRGF+LEELKAAGIPKKLAPTIG+SVDHRRKNRSLE LQ+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRRARKFKAGDSAPEEL TATQVQG YMP+  EKP V+LVKVT +MKSFKAY KL
Sbjct: 122 KLVVFPRRARKFKAGDSAPEELGTATQVQGQYMPVVQEKPXVELVKVTDEMKSFKAYGKL 181

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER NERH G R+KKAAEAEKE+KK
Sbjct: 182 RVERMNERHVGVRMKKAAEAEKEDKK 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192912994|gb|ACF06605.1| 60S ribosomal protein L13E [Elaeis guineensis]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 194/206 (94%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNV+PNGHFKKHWQNYV+TWFNQPARK RRR+ARQKKAVKIFPRPTAGPLRP+V  Q
Sbjct: 2   VKHNNVVPNGHFKKHWQNYVRTWFNQPARKTRRRIARQKKAVKIFPRPTAGPLRPIVQCQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK RAGRGFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYKA
Sbjct: 62  TLKYNMKSRAGRGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLV+FPRRARKFKAGDSAPEELATATQVQGPYMPI  EKP+V+LVKVT +MKSF+AY KL
Sbjct: 122 KLVIFPRRARKFKAGDSAPEELATATQVQGPYMPIVCEKPSVELVKVTDEMKSFRAYAKL 181

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER  +R  GAR+KKAAEAEKE+KK
Sbjct: 182 RVERMTQRQVGARMKKAAEAEKEDKK 207

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508216|ref|XP_003522855.1| PREDICTED: 60S ribosomal protein L13-2-like [Glycine max]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 195/206 (94%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNVIPNGHF+KHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAGRGF+LEELKAAGIPKKLAPTIG++VDHRRKNRSLE LQ+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNRSLESLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRRA+K KAGDS PEELA ATQVQG ++PI  EKPTV+LVKVT DMK+FKAY KL
Sbjct: 122 KLVVFPRRAQKVKAGDSTPEELANATQVQGSFLPIVREKPTVELVKVTDDMKAFKAYYKL 181

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N+RH+GARLKKAAEAEKE+KK
Sbjct: 182 RLERTNKRHYGARLKKAAEAEKEDKK 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819516|ref|XP_002877641.1| ATBBC1 [Arabidopsis lyrata subsp. lyrata] gi|297323479|gb|EFH53900.1| ATBBC1 [Arabidopsis lyrata subsp. lyrata]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/206 (84%), Positives = 193/206 (93%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKAYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAYDKI 180

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N+RH GAR K+A+EAEKEEKK
Sbjct: 181 RLERTNKRHAGARAKRASEAEKEEKK 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458303|ref|XP_004146887.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] gi|449458305|ref|XP_004146888.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 2 [Cucumis sativus] gi|449513147|ref|XP_004164245.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 1 [Cucumis sativus] gi|449513151|ref|XP_004164246.1| PREDICTED: 60S ribosomal protein L13-2-like isoform 2 [Cucumis sativus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/206 (85%), Positives = 194/206 (94%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARK RRR ARQ+KAVK FPRPTAGPLRPVVHGQ
Sbjct: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAGRGF+LEELKAAGIPKKLAPTIG+SVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           K+VVFPRRARKFKAGDS PEELA ATQVQGPY+PI  EK +V+LVKVT++MKSFKAYDKL
Sbjct: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N RH GARLK+AAEAEKE+KK
Sbjct: 181 RVERTNARHVGARLKRAAEAEKEDKK 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138542|ref|XP_002322840.1| predicted protein [Populus trichocarpa] gi|222867470|gb|EEF04601.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/200 (87%), Positives = 190/200 (95%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNV+PNGHFKKHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTAGPLRPIVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAGRGF+LEELKAAGIPKKLAPTIG++VDHRRKN SLEGLQ+N+QRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGIAVDHRRKNHSLEGLQANIQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPR ARKFKAGDSAPEELATATQVQG  MPI  EKP+V+LVKVT++MKSFKAYDKL
Sbjct: 122 KLVVFPRHARKFKAGDSAPEELATATQVQGHIMPIACEKPSVELVKVTEEMKSFKAYDKL 181

Query: 181 RIERANERHFGARLKKAAEA 200
           R+ER N RH GARLK+AAEA
Sbjct: 182 RVERTNARHVGARLKRAAEA 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071178|gb|ACJ83949.1| unknown [Medicago truncatula] gi|388508204|gb|AFK42168.1| unknown [Medicago truncatula]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 193/206 (93%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNVIPN HF+KHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           T KYNMKLRAG+GF+LEELKAAGIPKKLAPTIG+SVDHRRKNRSLEGLQ+NVQRLKTYKA
Sbjct: 62  TAKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRRARK KAGDS PEELA ATQVQG Y+PI  EKPTV+LVKVT +MK+FKAY KL
Sbjct: 122 KLVVFPRRARKTKAGDSTPEELANATQVQGSYLPIVREKPTVELVKVTDEMKAFKAYYKL 181

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N+RH GARLK+AAEAEKE+KK
Sbjct: 182 RLERTNKRHLGARLKRAAEAEKEDKK 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559071|ref|XP_003547825.1| PREDICTED: 60S ribosomal protein L13-2-like [Glycine max]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 193/206 (93%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNVIPNGHF+KHWQNYVKTWFNQPARK RRR+ARQKKAVKIFPRPTAG LRP+VHGQ
Sbjct: 2   VKHNNVIPNGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGSLRPIVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMK+RAGRGF+LEELKAAGIPKKLAPTIG+SVDHRRKNRSLE LQ+NVQRLKTYKA
Sbjct: 62  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLESLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRRA K KAGDS+ EELA ATQVQGP++PI  EKPTVDLVKVT +MK+FKAY KL
Sbjct: 122 KLVVFPRRAHKVKAGDSSLEELANATQVQGPFLPIVREKPTVDLVKVTDEMKAFKAYYKL 181

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ER N+RH GARLKKAAEAEKE+KK
Sbjct: 182 RLERTNKRHHGARLKKAAEAEKEDKK 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576756|ref|XP_002529265.1| 60S ribosomal protein L13, putative [Ricinus communis] gi|223531254|gb|EEF33097.1| 60S ribosomal protein L13, putative [Ricinus communis]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/194 (89%), Positives = 187/194 (96%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +KHNNV+PNGHFKKHWQNYVKTWFNQPARK RRRVARQKKAVKIFPRPTAGPLRP+VHGQ
Sbjct: 2   VKHNNVVPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPIVHGQ 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYKA
Sbjct: 62  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKA 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           KLVVFPRRARK KAGDSAPEELATATQVQG YMPI  EKP+V+LVKVT++MKSFKAYDKL
Sbjct: 122 KLVVFPRRARKSKAGDSAPEELATATQVQGKYMPIVREKPSVELVKVTEEMKSFKAYDKL 181

Query: 181 RIERANERHFGARL 194
           R+ER N+RH GAR+
Sbjct: 182 RVERMNQRHLGARM 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2101283	206	BBC1 "breast basic conserved 1	0.936	0.936	0.777	4.1e-81
TAIR|locus:2172863	206	AT5G23900 [Arabidopsis thalian	0.936	0.936	0.761	3.8e-78
TAIR|locus:2101328	206	AT3G48960 [Arabidopsis thalian	0.936	0.936	0.715	2.3e-71
ZFIN|ZDB-GENE-031007-1	211	rpl13 "ribosomal protein L13"	0.922	0.900	0.552	5.8e-50
FB|FBgn0011272	218	RpL13 "Ribosomal protein L13"	0.932	0.880	0.518	1.1e-48
UNIPROTKB|P41125	211	RPL13 "60S ribosomal protein L	0.922	0.900	0.510	3.8e-46
RGD|621179	211	Rpl13 "ribosomal protein L13"	0.922	0.900	0.505	7.9e-46
UNIPROTKB|E2R4F5	211	RPL13 "Uncharacterized protein	0.917	0.895	0.513	1e-45
MGI|MGI:105922	211	Rpl13 "ribosomal protein L13"	0.917	0.895	0.513	1e-45
UNIPROTKB|F1MK30	293	RPL13 "60S ribosomal protein L	0.917	0.645	0.518	1.6e-45

TAIR|locus:2101283 BBC1 "breast basic conserved 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 150/193 (77%), Positives = 166/193 (86%)

Query:     1 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQ 60
             MKHNNVIPNGHFKKHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQ
Sbjct:     1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query:    61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
             TLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK 
Sbjct:    61 TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query:   121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
             KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT++LVK+T +MKSFKA+DK+
Sbjct:   121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query:   181 RIERANERHFGAR 193
             R+ER N+RH GAR
Sbjct:   181 RLERTNKRHAGAR 193

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS;TAS

GO:0006412 "translation" evidence=IEA;ISS;TAS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2172863 AT5G23900 [Arabidopsis thaliana (taxid:3702)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 147/193 (76%), Positives = 162/193 (83%)

Query:     1 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQ 60
             MKHNNVIP+ HF+KHWQNYVKTWFNQP                IFPRPT+GPLRPVVHGQ
Sbjct:     1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query:    61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
             TLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKA
Sbjct:    61 TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query:   121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
             KLVVFPRR+R+ KAGDS PEELA ATQVQG YMPI   K  ++LVK+T D+K+FKAYDK+
Sbjct:   121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query:   181 RIERANERHFGAR 193
             R+ER N RH GAR
Sbjct:   181 RLERTNARHAGAR 193

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2101328 AT3G48960 [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 138/193 (71%), Positives = 153/193 (79%)

Query:     1 MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQ 60
             MKHNNVIPNGHFKK W+NYVKT FNQP                IFPRPTAGP+RPVVH Q
Sbjct:     1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQ 60

Query:    61 TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
             TL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKA
Sbjct:    61 TLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKA 120

Query:   121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
             KLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT++LVK+T DMK F AYDK+
Sbjct:   121 KLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKI 180

Query:   181 RIERANERHFGAR 193
             R+E  N+RH G R
Sbjct:   181 RLEGINKRHAGVR 193

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

ZFIN|ZDB-GENE-031007-1 rpl13 "ribosomal protein L13" [Danio rerio (taxid:7955)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 105/190 (55%), Positives = 127/190 (66%)

Query:     4 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLK 63
             N +I N HF K WQ  V+TWFNQP                I PRP +GPLRPVV   T++
Sbjct:     6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIR 65

Query:    64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
             Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL+
Sbjct:    66 YHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLI 125

Query:   124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
             +FPR+A K K GDS  EEL  ATQ+ GP MPI           +++D K+FKA+  LR+ 
Sbjct:   126 IFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMA 185

Query:   184 RANERHFGAR 193
             RAN R FG R
Sbjct:   186 RANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

FB|FBgn0011272 RpL13 "Ribosomal protein L13" [Drosophila melanogaster (taxid:7227)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 100/193 (51%), Positives = 129/193 (66%)

Query:     2 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQT 61
             K NN+IPN H+ K WQ +VKTWFNQP                +FPRP +G LRPVV   T
Sbjct:     3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPT 62

Query:    62 LKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAK 121
             ++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RRKN+SLE  Q N+QRLK Y++K
Sbjct:    63 IRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSK 122

Query:   122 LVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTV-DLVKVTQDMKSFKAYDKL 180
             L++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P V +  +VT+D K FKA+  L
Sbjct:   123 LILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATL 182

Query:   181 RIERANERHFGAR 193
             R  R + R  G R
Sbjct:   183 RKARTDARLVGIR 195

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0005811 "lipid particle" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|P41125 RPL13 "60S ribosomal protein L13" [Gallus gallus (taxid:9031)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 97/190 (51%), Positives = 124/190 (65%)

Query:     4 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLK 63
             N +I   HF K WQ  V TWFNQP                I PRP AGP+RP+V   T++
Sbjct:     6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVR 65

Query:    64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
             Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct:    66 YHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125

Query:   124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
             +FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ 
Sbjct:   126 LFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMA 185

Query:   184 RANERHFGAR 193
             RAN R FG R
Sbjct:   186 RANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

RGD|621179 Rpl13 "ribosomal protein L13" [Rattus norvegicus (taxid:10116)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 96/190 (50%), Positives = 124/190 (65%)

Query:     4 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLK 63
             N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++
Sbjct:     6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65

Query:    64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
             Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct:    66 YHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125

Query:   124 VFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
             +FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ 
Sbjct:   126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMA 185

Query:   184 RANERHFGAR 193
             RAN R FG R
Sbjct:   186 RANARLFGIR 195

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0015934 "large ribosomal subunit" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;NAS

UNIPROTKB|E2R4F5 RPL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 98/191 (51%), Positives = 127/191 (66%)

Query:     4 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLK 63
             N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++
Sbjct:     6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65

Query:    64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
             Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct:    66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125

Query:   124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI-TLEKPTVDLVKVTQDMKSFKAYDKLRI 182
             +FPR+    K GDS+ EEL  ATQ+ GP MPI  + K     V +T++ K+FKA+  LR+
Sbjct:   126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARV-ITEEEKNFKAFASLRM 184

Query:   183 ERANERHFGAR 193
              RAN R FG R
Sbjct:   185 ARANARLFGIR 195

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:105922 Rpl13 "ribosomal protein L13" [Mus musculus (taxid:10090)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 98/191 (51%), Positives = 127/191 (66%)

Query:     4 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLK 63
             N +I   HF K WQ  V TWFNQP                I PRP +GP+RP+V   T++
Sbjct:     6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65

Query:    64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
             Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL+
Sbjct:    66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125

Query:   124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI-TLEKPTVDLVKVTQDMKSFKAYDKLRI 182
             +FPR+    K GDS+ EEL  ATQ+ GP MPI  + K     V +T++ K+FKA+  LR+
Sbjct:   126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARV-ITEEEKNFKAFASLRM 184

Query:   183 ERANERHFGAR 193
              RAN R FG R
Sbjct:   185 ARANARLFGIR 195

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1MK30 RPL13 "60S ribosomal protein L13" [Bos taurus (taxid:9913)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 99/191 (51%), Positives = 126/191 (65%)

Query:     4 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLK 63
             N +I   HF K WQ  V TWFNQP                I PRP +GPLRPVV   T++
Sbjct:     6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVR 65

Query:    64 YNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLV 123
             Y+ K+RAGRGF+LEEL+ AGI KK+A TIG+SVD RR+N+  E LQ+NVQRLK Y++KL+
Sbjct:    66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLI 125

Query:   124 VFPRRARKFKAGDSAPEELATATQVQGPYMPI-TLEKPTVDLVKVTQDMKSFKAYDKLRI 182
             +FPR+    K GDS+ EEL  ATQ+ GP MPI  + K     V +T++ K+FKA+  LR+
Sbjct:   126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARV-ITEEEKNFKAFASLRM 184

Query:   183 ERANERHFGAR 193
              RAN R FG R
Sbjct:   185 ARANARLFGIR 195

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q95043	RL13_SCHMA	No assigned EC number	0.5224	0.8640	0.9673	N/A	no
Q9SMT4	RL132_ARATH	No assigned EC number	0.7760	0.9320	0.9320	no	no
O74175	RL13_SCHPO	No assigned EC number	0.5561	0.8398	0.8317	yes	no
Q9FF90	RL133_ARATH	No assigned EC number	0.8440	0.9029	0.9029	no	no
Q9Z313	RL13_CRIGR	No assigned EC number	0.5512	0.9563	0.9336	yes	no
P91128	RL13_CAEEL	No assigned EC number	0.5	0.9611	0.9565	yes	no
O48513	RL13_CHLSW	No assigned EC number	0.5893	0.9951	0.9855	N/A	no
P26373	RL13_HUMAN	No assigned EC number	0.5463	0.9563	0.9336	yes	no
Q90Z10	RL13_DANRE	No assigned EC number	0.5970	0.9757	0.9526	yes	no
Q90YV5	RL13_ICTPU	No assigned EC number	0.5671	0.9757	0.9526	N/A	no
P47963	RL13_MOUSE	No assigned EC number	0.5560	0.9563	0.9336	yes	no
O46157	RL13_LUMRU	No assigned EC number	0.5444	0.8737	0.9574	N/A	no
Q12690	RL13A_YEAST	No assigned EC number	0.4516	0.8349	0.8643	yes	no
Q56JZ1	RL13_BOVIN	No assigned EC number	0.5609	0.9563	0.9336	yes	no
P41126	RL13_DROME	No assigned EC number	0.5588	0.9854	0.9311	yes	no
P41127	RL131_ARATH	No assigned EC number	0.8481	0.9271	0.9271	yes	no
P41125	RL13_CHICK	No assigned EC number	0.5609	0.9563	0.9336	yes	no
P41123	RL13_RAT	No assigned EC number	0.5522	0.9757	0.9526	yes	no
Q962U1	RL13_SPOFR	No assigned EC number	0.5273	0.9563	0.8995	N/A	no
P40212	RL13B_YEAST	No assigned EC number	0.4516	0.8349	0.8643	yes	no
P41128	RL131_BRANA	No assigned EC number	0.8446	1.0	1.0	N/A	no
P41129	RL132_BRANA	No assigned EC number	0.8495	1.0	1.0	N/A	no
P49627	RL13_TOBAC	No assigned EC number	0.7340	0.9126	0.9306	N/A	no
Q54E20	RL13_DICDI	No assigned EC number	0.5025	0.9223	0.9090	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001686001	RecName- Full=60S ribosomal protein L13; (207 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•	•		0.935
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•			0.928
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.886
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•			0.853
	GSVIVG00002547001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (210 aa)				•		•			0.843
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)				•		•	•		0.840
	GSVIVG00025349001	RecName- Full=60S ribosomal protein L6; (231 aa)				•	•	•	•		0.832
	GSVIVG00034021001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence;; Required for the asse [...] (274 aa)				•		•			0.829
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•		•	•		0.827
	GSVIVG00008857001	RecName- Full=60S ribosomal protein L6; (233 aa)				•	•	•	•		0.822

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam01294	179	pfam01294, Ribosomal_L13e, Ribosomal protein L13e	1e-95
PTZ00352	212	PTZ00352, PTZ00352, 60S ribosomal protein L13; Pro	4e-67
PTZ00192	218	PTZ00192, PTZ00192, 60S ribosomal protein L13; Pro	1e-52
COG4352	113	COG4352, RPL13, Ribosomal protein L13E [Translatio	1e-30
PRK12277	83	PRK12277, PRK12277, 50S ribosomal protein L13e; Pr	2e-05

>gnl|CDD|110307 pfam01294, Ribosomal_L13e, Ribosomal protein L13e

 Score =  275 bits (706), Expect = 1e-95
 Identities = 122/179 (68%), Positives = 146/179 (81%)

Query: 5   NVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKY 64
           N+I N HF+KHWQ  VKTWFNQPARK RRR ARQ KAVKI PRP AGPLRPVV   T+KY
Sbjct: 1   NMILNNHFRKHWQRRVKTWFNQPARKVRRRNARQAKAVKIAPRPAAGPLRPVVRCPTVKY 60

Query: 65  NMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVV 124
           NMK+RAGRGFTLEELKAAGI KK A TIG++VDHRR+NRSLEGLQ+NVQRLK Y++KL++
Sbjct: 61  NMKVRAGRGFTLEELKAAGINKKFARTIGIAVDHRRRNRSLEGLQANVQRLKEYQSKLIL 120

Query: 125 FPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIE 183
           FPR  +K +AGDS+ EE+ +ATQ++GP MPI  E   V+  KVT++ KSFKA+  LR+ 
Sbjct: 121 FPRNPKKPRAGDSSAEEVKSATQLKGPVMPIAQEAKRVEARKVTKEEKSFKAFATLRLA 179

Length = 179

>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional

 Score =  204 bits (521), Expect = 4e-67
 Identities = 104/211 (49%), Positives = 133/211 (63%), Gaps = 10/211 (4%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNNV+PN H  KHWQ +VKTW+NQP RK RRR+ARQKKA    PRP    LRPVVHG 
Sbjct: 1   MKHNNVLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRPV-ELLRPVVHGP 59

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           T +YNMK+R GRGFTLEELKAAG+  + A +IG++VDHRR+NRS E L  NV+RLK Y +
Sbjct: 60  TQRYNMKVRLGRGFTLEELKAAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLS 119

Query: 121 KLVVFPRRARKFKAG------DSAPEELAT---ATQVQGPYMPITLEKPTVDLVKVTQDM 171
           KLV+FPR+ +K K G      D++ EE+             +P            +T++ 
Sbjct: 120 KLVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEE 179

Query: 172 KSFKAYDKLRIERANERHFGARLKKAAEAEK 202
           ++F AY  LR  + N +  G + KK    EK
Sbjct: 180 RAFNAYRTLRQAKLNAKFVGKKEKKKQAKEK 210

Length = 212

>gnl|CDD|173472 PTZ00192, PTZ00192, 60S ribosomal protein L13; Provisional

 Score =  167 bits (425), Expect = 1e-52
 Identities = 99/218 (45%), Positives = 136/218 (62%), Gaps = 13/218 (5%)

Query: 1   MKHNNVIPNGHFKKHW------QNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLR 54
            K NN IP+ H +KHW      +  VK + NQPA+K+RRR  R  KA KIFPRP    LR
Sbjct: 2   PKGNNAIPHVHQRKHWNPCSSQKGNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPLKA-LR 60

Query: 55  PVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQR 114
           P V+  T+++NMK R GRGF+L ELKAAG+  + A TIG+ VD RRKN+S EG+  NVQR
Sbjct: 61  PQVNCPTVRHNMKQRLGRGFSLAELKAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQR 120

Query: 115 LKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMP---ITLEKPTVDLV-KVTQD 170
           LKTY +KLV+FP   +K + G++  EE+  ATQ +  +       +  P+ +    V+++
Sbjct: 121 LKTYMSKLVLFPMNHKKVQKGEAKEEEVKAATQDRSRFGDAAVGGVVTPSREAPRVVSKE 180

Query: 171 MKSFKAYDKLRIERANERHFGARLKKAA--EAEKEEKK 206
            +S   Y  L+   +  R FG R ++AA  EA+KEEKK
Sbjct: 181 ERSKNVYAFLKKNHSAVRFFGVRSRRAARKEAKKEEKK 218

Length = 218

>gnl|CDD|226798 COG4352, RPL13, Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 59/114 (51%), Positives = 79/114 (69%), Gaps = 1/114 (0%)

Query: 13  KKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGR 72
           +KHWQ  VK  F+Q  +K  RR AR  KA KI PRP A  ++P V   T KYN K+RAGR
Sbjct: 1   RKHWQLRVKVHFDQAGKKVSRRNARLTKAAKIAPRPKA-LVKPPVRAPTGKYNRKVRAGR 59

Query: 73  GFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126
           GF+L ELKAAG+  + A T+G++VDHRR+NR+ E  ++ V+R+K    K++VFP
Sbjct: 60  GFSLGELKAAGLSARKARTLGIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP 113

Length = 113

>gnl|CDD|183397 PRK12277, PRK12277, 50S ribosomal protein L13e; Provisional

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 47  RPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLE 106
            P A   RP    +        R GRGF++ EL+AAG+  K A  +G+ VD RRK    E
Sbjct: 7   PPKAIVKRPNYRFEYGGKRKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE 66

Query: 107 GLQSNVQRLKTYKAKL 122
               NV+ LK +  +L
Sbjct: 67  ----NVEALKKFLEQL 78

Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG3295	205	consensus 60S Ribosomal protein L13 [Translation,	100.0
PTZ00352	212	60S ribosomal protein L13; Provisional	100.0
PTZ00192	218	60S ribosomal protein L13; Provisional	100.0
PF01294	179	Ribosomal_L13e: Ribosomal protein L13e; InterPro:	100.0
COG4352	113	RPL13 Ribosomal protein L13E [Translation, ribosom	100.0
PRK12277	83	50S ribosomal protein L13e; Provisional	100.0

>KOG3295 consensus 60S Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.7e-95  Score=615.91  Aligned_cols=205  Identities=65%  Similarity=0.956  Sum_probs=202.6

Q ss_pred             CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624            1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK   80 (206)
Q Consensus         1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk   80 (206)
                      |+|||||||+|||||||++|+||||||++|.+|+++|++||.+|||||++ +|||||||||++||+++|+||||||+||+
T Consensus         1 ~k~n~~ipn~Hf~K~wq~~vktwfnqp~rk~rrr~~r~~kA~~i~PrP~~-~lRPvVrcptirYn~k~RaGRGFtleElk   79 (205)
T KOG3295|consen    1 MKGNNMIPNNHFRKHWQKRVKTWFNQPARKTRRRQARQKKAVKIAPRPLS-LLRPVVRCPTIRYNRKVRAGRGFTLEELK   79 (205)
T ss_pred             CCCCCcCCchhhHHHHHHHHHHHcCchHHHHHHHHHHHhhhhccCCCchh-hcCCcccccchhhhhhhhccCCccHHHHH
Confidence            89999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhhccCcccccCCCCC
Q 028624           81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP  160 (206)
Q Consensus        81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q~~~~vmPi~~~~~  160 (206)
                      +|||+.++|+||||+||+||+|+|+|+||.||||||+|+|+|||||+++++||+||||+||+++++|+.|++|||.+...
T Consensus        80 ~AGi~k~~A~tiGIaVD~RRrn~s~E~lqaNvqRlKey~sklilfprk~~apkkGdSsaeel~~atq~~g~~mPi~~~~~  159 (205)
T KOG3295|consen   80 AAGISKKVARTIGIAVDHRRRNRSQEGLQANVQRLKEYKSKLILFPRKASAPKKGDSSAEELKLATQLTGPVMPIVNVYA  159 (205)
T ss_pred             HcCccHhhccceeeeecccccCccHHHHHHhHHHHHHhhcceEEeecCcCCCcCCCCcHHHHHhhhhhcCCCcCccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhhcC
Q 028624          161 TVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEKK  206 (206)
Q Consensus       161 ~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~~~  206 (206)
                      .+++++||+||++|+||++||+||+|+|+.|+|+|||+|++|+|++
T Consensus       160 ~eEa~~~t~e~k~f~Af~~lr~aRa~ar~~g~raKRa~Eaae~EkK  205 (205)
T KOG3295|consen  160 KEEARVVTDEEKNFKAFRTLRLARANARLAGIRAKRAKEAAEEEKK  205 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999998753

>PTZ00352 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=1.7e-94  Score=618.50  Aligned_cols=202  Identities=51%  Similarity=0.840  Sum_probs=197.8

Q ss_pred             CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624            1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK   80 (206)
Q Consensus         1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk   80 (206)
                      |+|||+|||+|||||||++|+||||||++|++||++|++||++|||||++ +|||||||||++||+++|+||||||+||+
T Consensus         1 mkhNn~lpn~HF~K~Wq~~VktwFnQp~rK~rRR~aR~~KA~~i~prP~~-~LrPiVrcpT~ryn~k~R~GRGFtl~ELk   79 (212)
T PTZ00352          1 MKHNNVLPNVHLHKHWQRFVKTWYNQPGRKKRRRLARQKKAAAAGPRPVE-LLRPVVHGPTQRYNMKVRLGRGFTLEELK   79 (212)
T ss_pred             CCcCCCCCchhhhHHHHhhcccccCchHHHHHHHHHHHHHHHHhCCCCcc-cCCcceecccccccceeeccCCCCHHHHH
Confidence            89999999999999999999999999999999999999999999999975 99999999999999999999999999999


Q ss_pred             HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCC------CCChHHhhh--hh-hccCc
Q 028624           81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG------DSAPEELAT--AT-QVQGP  151 (206)
Q Consensus        81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkg------Ds~~ee~~~--a~-Q~~~~  151 (206)
                      +|||+.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++||||      |+++||+++  ++ |+.|.
T Consensus        80 aaGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~y~skLvlFPrk~~k~kkG~~gip~Dss~ee~~~~~a~~q~~g~  159 (212)
T PTZ00352         80 AAGLNAQAARSIGIAVDHRRRNRSQESLNLNVKRLKAYLSKLVLFPRKGKKPKKGFAGIPADTSKEEVVALPVKQNKNSE  159 (212)
T ss_pred             HcCCCHHHhcccceeeccccccCcHHHHHHHHHHHHHHHHheeeecCCCCccccCCCCCCCCCCHHHHHHHHHHHhhcCc
Confidence            9999999999999999999999999999999999999999999999999999999      999999998  77 89999


Q ss_pred             ccccCCCCCcccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhh
Q 028624          152 YMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKE  203 (206)
Q Consensus       152 vmPi~~~~~~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~  203 (206)
                      +|||.+..+.+++++||+||++|+||.+||+||++++++|+|+|+|+++++.
T Consensus       160 vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~r~kra~~k~~~  211 (212)
T PTZ00352        160 VIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGKKEKKKQAKEKK  211 (212)
T ss_pred             eecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999988764

>PTZ00192 60S ribosomal protein L13; Provisional

Probab=100.00  E-value=1.2e-92  Score=608.81  Aligned_cols=198  Identities=48%  Similarity=0.721  Sum_probs=191.4

Q ss_pred             CCcCCCCCCCcccccchhh------hhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCC
Q 028624            1 MKHNNVIPNGHFKKHWQNY------VKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGF   74 (206)
Q Consensus         1 ~k~Nn~ipn~HF~K~Wq~r------VktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGF   74 (206)
                      |+|||+|||+|||||||++      |+||||||++|++||++|++||++|||||++ +|||||||||++||+++|+||||
T Consensus         2 ~khNn~ipn~HF~K~Wq~~~~~~~~VktwFnQP~rK~rRR~~R~~KA~~iaPRP~~-~LRPiVrcPT~rYN~kvR~GRGF   80 (218)
T PTZ00192          2 PKGNNAIPHVHQRKHWNPCSSQKGNVKVFLNQPAQKHRRRRLRLLKAKKIFPRPLK-ALRPQVNCPTVRHNMKQRLGRGF   80 (218)
T ss_pred             CcccCCCCchHHHhHHhhhcccCCceeeecCchHHHHHHHHHHHHHHHHhCCCCCc-cCCccccCCcccccceeeccCCc
Confidence            4899999999999999999      9999999999999999999999999999975 99999999999999999999999


Q ss_pred             CHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhh-------
Q 028624           75 TLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ-------  147 (206)
Q Consensus        75 sl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q-------  147 (206)
                      ||+||++|||+.++|+||||+||+||+|+|+|||+.|||||++|+|+|||||++.++|||||+++||++.++|       
T Consensus        81 tl~ELk~aGi~~~~ArtiGI~VD~RR~n~s~Esl~~Nv~rLk~Y~skLilFPrk~~k~kkgds~~ee~k~a~Q~~~~~~~  160 (218)
T PTZ00192         81 SLAELKAAGLNPRFARTIGIRVDRRRKNKSEEGMNVNVQRLKTYMSKLVLFPMNHKKVQKGEAKEEEVKAATQDRSRFGD  160 (218)
T ss_pred             CHHHHHHcCCCHHHhcccceeeccccccccHHHHHHHHHHHHHHHHheeeeccccCCCCCCCCCHHHHHHHHhhhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999       


Q ss_pred             --ccCcccccCCCCCcccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhh
Q 028624          148 --VQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEE  204 (206)
Q Consensus       148 --~~~~vmPi~~~~~~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~  204 (206)
                        +.|.+|||     .+++++||+||++|+||.+||+||++++++|+|+|+|++++..+
T Consensus       161 ~~~~g~v~Pi-----~~~~~~it~eek~~~Ay~~LR~aR~~~r~~G~r~krak~~~~~~  214 (218)
T PTZ00192        161 AAVGGVVTPS-----REAPRVVSKEERSKNVYAFLKKNHSAVRFFGVRSRRAARKEAKK  214 (218)
T ss_pred             ccccCccccc-----ccccccCCHHHHHhhHHHHHHHHHHHhHHhhHHHHHHHHHHHhh
Confidence              66899999     47899999999999999999999999999999999998776543

>PF01294 Ribosomal_L13e: Ribosomal protein L13e; InterPro: IPR001380 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=7.4e-89  Score=572.61  Aligned_cols=179  Identities=63%  Similarity=0.986  Sum_probs=123.2

Q ss_pred             CCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHHHcCC
Q 028624            5 NVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGI   84 (206)
Q Consensus         5 n~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk~aGi   84 (206)
                      |||||+|||||||++|+||||||++|++||++|++||++++|+|++|+|||||||||+|||+++|+||||||+||++|||
T Consensus         1 n~ipn~Hf~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~prP~~g~LrPiVrcpt~rYn~k~r~GRGFsl~ELk~aGi   80 (179)
T PF01294_consen    1 NVIPNNHFRKDWQRRVKTWFNQPARKKRRRQARQAKAAKIAPRPVSGPLRPIVRCPTVRYNTKVRLGRGFSLEELKAAGI   80 (179)
T ss_dssp             -------SSS-GGGS----THHHHHHHHHHHHHHHHHHHHTTS-SS--B--EEE-SSTTTTTSEEE-SSB-HHHHHHHT-
T ss_pred             CCcccccchhhhhhhhhhhcCcHHHHHHHHHHHHHHHHhcCCCCcchhhHhhhhccceecccccccCCCcCHHHHHHcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhhccCcccccCCCCCcccc
Q 028624           85 PKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDL  164 (206)
Q Consensus        85 ~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q~~~~vmPi~~~~~~~~~  164 (206)
                      +.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++||+|||++||+++|+|+.|++|||.+..+.+++
T Consensus        81 ~~~~A~tiGI~VD~RR~n~s~Esl~~Nv~RLkeY~sklilfPrk~~~~kkGdss~ee~k~a~q~~~~v~Pi~~~~~~~~~  160 (179)
T PF01294_consen   81 SKKYARTIGISVDHRRKNKSEESLQANVQRLKEYKSKLILFPRKAKKPKKGDSSAEELKLATQLKGPVMPIRKVKKKEKA  160 (179)
T ss_dssp             -HHHHHHHTB-B-TT----SHHHHHHHHHHHHHHHHT-----SSS---TTT--TTHHHH-----HHHHS-----------
T ss_pred             ChHHccccCeeeccccCCccHHHHHHHHHHHHhhhhhceeecCccccccccCCCHHHHHHHHhhcCceeeecCCcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccchHHHHHHHH
Q 028624          165 VKVTQDMKSFKAYDKLRIE  183 (206)
Q Consensus       165 ~~It~eek~~~ay~~LR~a  183 (206)
                      +.||+||++|+||.+||+|
T Consensus       161 r~it~eek~~~af~~LR~a  179 (179)
T PF01294_consen  161 RAITEEEKKFSAFRTLRMA  179 (179)
T ss_dssp             HHHHHHHTTS-HHHHHHHH
T ss_pred             ccCCHHHhhhhHHHHHhcC
Confidence            9999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal protein L13e is widely found in vertebrates [], Drosophila melanogaster, plants, yeast, amongst others.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A18_U 4A1B_U 4A1D_U 4A19_U.

>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-44  Score=280.75  Aligned_cols=113  Identities=52%  Similarity=0.825  Sum_probs=111.7

Q ss_pred             cccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHHHcCCCCCccccc
Q 028624           13 KKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTI   92 (206)
Q Consensus        13 ~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk~aGi~~k~A~ti   92 (206)
                      +|+||.+|++||||++++.+|+++++.+|++++|+|.+ .++|+|+|||+.||+++|+||||||+||++|||+.+.|++|
T Consensus         1 ~k~~~l~vk~h~d~~~k~~~~~~~~~~~a~~~a~~Pk~-~vk~p~~~~~~~~nrk~R~GRGFslgEl~aAGL~~~~AR~L   79 (113)
T COG4352           1 RKHWQLRVKVHFDQAGKKVSRRNARLTKAAKIAPRPKA-LVKPPVRAPTGKYNRKVRAGRGFSLGELKAAGLSARKARTL   79 (113)
T ss_pred             CchHHHHHHHHhChhhhHHHHHhhhhhhccccCCCcHH-HccCCccCCccCcccceeccCCccHHHHHHcCcCHHHHHhh
Confidence            58999999999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             ceeecccccccchhhHHHHHHHHHHHHhhhcccc
Q 028624           93 GVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP  126 (206)
Q Consensus        93 GI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfP  126 (206)
                      ||+||+||+|.++|+++.||++|++|++++++||
T Consensus        80 GI~VD~RRr~~~~en~eal~k~ik~ll~~~~~~p  113 (113)
T COG4352          80 GIAVDHRRRNRNPENFEALVKRIKELLEKIIVFP  113 (113)
T ss_pred             CcceehhhccCCHHHHHHHHHHHHHHHhcCccCC
Confidence            9999999999999999999999999999999998

>PRK12277 50S ribosomal protein L13e; Provisional

Probab=100.00  E-value=1.3e-37  Score=234.53  Aligned_cols=73  Identities=36%  Similarity=0.584  Sum_probs=70.4

Q ss_pred             CCCCCCCCCCeeecCcccccc-----ccccCCCCCHHHHHHcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHh
Q 028624           46 PRPTAGPLRPVVHGQTLKYNM-----KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA  120 (206)
Q Consensus        46 PrP~~g~lrPiVrcpt~ryn~-----k~r~GRGFsl~Elk~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~s  120 (206)
                      ++|++ +|||||+|||++||+     ++|+||||||+||++|||++++|+||||+||+||+|+|+|    ||||||+|+|
T Consensus         2 ~~~~~-~lrPiVr~Pt~ryn~gg~~~k~R~GRGFsl~ELkaaGi~~~~ArtiGI~VD~RRrn~~~e----NVerLk~y~s   76 (83)
T PRK12277          2 REEME-PPKAIVKRPNYRFEYGGKRKDKRIGRGFSIGELEAAGLDIKNARKLGIRVDKRRKTVHEE----NVEALKKFLE   76 (83)
T ss_pred             CCCcC-CCCCceeCCceecccCCCCCceeecCCcCHHHHHHcCCCHHHhcccCeeecccccCCCHH----HHHHHHHHHH
Confidence            67898 999999999999999     9999999999999999999999999999999999999876    9999999999


Q ss_pred             hhc
Q 028624          121 KLV  123 (206)
Q Consensus       121 kli  123 (206)
                      +|-
T Consensus        77 kL~   79 (83)
T PRK12277         77 QLG   79 (83)
T ss_pred             Hhc
Confidence            985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
3zf7_N	218	High-resolution Cryo-electron Microscopy Structure		2e-33
4a18_U	206	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-31
3u5e_L	199	The Structure Of The Eukaryotic Ribosome At 3.0 A R		6e-30

>pdb|3ZF7|N Chain N, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 218

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 97/157 (61%), Gaps = 7/157 (4%)
Query: 2   KHNNVIPNGHFKKHW------QNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRP 55
           K NN IP+ H +KHW      +  VK +FNQP                IFPRP    LRP
Sbjct: 3   KGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-LRP 61
Query: 56  VVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRL 115
            V+  T++YNMK R GRGF+LEELKAAG+  + A TIG+ VD RRKN+S EG+  NVQRL
Sbjct: 62  QVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQRL 121
Query: 116 KTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPY 152
           KTY +KLV+FP   +K + GD+  EE+  ATQ +  Y
Sbjct: 122 KTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDRSRY 158

>pdb|4A18|U Chain U, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 206

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQ 60
           MKHNN +P    +KH Q  +KT+FNQ                 +FPRPT   L+PVV  Q
Sbjct: 1   MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQ 59
Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           T +YN   + GRGFTL+ELKAAGI    A +IG+ VDHRRKNR  E L+ N +RL  Y +
Sbjct: 60  TQRYNKSTKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVS 119
Query: 121 KLVVFPRRARKFKAG---DSAPEELAT--ATQVQGPYMPITLEKPTVDLVKVTQDMKSFK 175
           KLV+FPR   K K G   D+A    A   A Q   P   ++  +  V  +    +++  K
Sbjct: 120 KLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIA---ELRKKK 176
Query: 176 AYDKLRIERANERHFG 191
            Y  +R E+ N++  G
Sbjct: 177 VYRIIRQEKTNQKWDG 192

>pdb|3U5E|L Chain L, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 199

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 7   IPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNM 66
           I   HF+KHWQ  VK  F+Q                 I PRP    LRPVV   T+KYN 
Sbjct: 9   ILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPL-DLLRPVVRAPTVKYNR 67
Query: 67  KLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFP 126
           K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++K++VFP
Sbjct: 68  KVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFP 127
Query: 127 RRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDL-VKVTQDMKSFKAYDKLRIERA 185
           R  +       APE    A QV        + +P  D+  +  QD     A+  LR+ R+
Sbjct: 128 RNGK-------APE----AEQVLSAAATFPIAQPATDVEARAVQD-NGESAFRTLRLARS 175
Query: 186 NERHFG 191
            ++  G
Sbjct: 176 EKKFRG 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	4e-71
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	5e-64
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U Length = 206

 Score =  214 bits (545), Expect = 4e-71
 Identities = 84/206 (40%), Positives = 116/206 (56%), Gaps = 3/206 (1%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           MKHNN +P    +KH Q  +KT+FNQ A+K  R  AR+ +A  +FPRP    L+PVV  Q
Sbjct: 1   MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRP-TEKLQPVVRKQ 59

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           T +YN   + GRGFTL+ELKAAGI    A +IG+ VDHRRKNR  E L+ N +RL  Y +
Sbjct: 60  TQRYNKSTKLGRGFTLQELKAAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVS 119

Query: 121 KLVVFPRRARKFKAG--DSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYD 178
           KLV+FPR   K K G  +   +  + A       +P+         V    +++  K Y 
Sbjct: 120 KLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSVSKREKAVSNIAELRKKKVYR 179

Query: 179 KLRIERANERHFGARLKKAAEAEKEE 204
            +R E+ N++  G R  KA  A + +
Sbjct: 180 IIRQEKTNQKWDGKRKAKAQAAAEPK 205

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L Length = 199

 Score =  195 bits (497), Expect = 5e-64
 Identities = 85/206 (41%), Positives = 115/206 (55%), Gaps = 12/206 (5%)

Query: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60
           +  N  I   HF+KHWQ  VK  F+Q  +K  RR AR  +A KI PRP    LRPVV   
Sbjct: 3   ISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRP-LDLLRPVVRAP 61

Query: 61  TLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKA 120
           T+KYN K+RAGRGFTL E+KAAG+    A TIG++VDHRR+NR+ E   +NVQRLK Y++
Sbjct: 62  TVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQS 121

Query: 121 KLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKL 180
           K++VFPR  +  +A                   PI   +P  D+           A+  L
Sbjct: 122 KIIVFPRNGKAPEAEQ---------VLSAAATFPI--AQPATDVEARAVQDNGESAFRTL 170

Query: 181 RIERANERHFGARLKKAAEAEKEEKK 206
           R+ R+ ++  G R K+A E  + E +
Sbjct: 171 RLARSEKKFRGIREKRAREKAEAEAE 196

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 19/49 (38%)

Query: 101 KNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQ 149
           + ++L+ LQ+    LK Y               A DSAP  LA    ++
Sbjct: 18  EKQALKKLQA---SLKLY---------------ADDSAP-ALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4a18_U	206	RPL13, 60S ribosomal protein L36; ribosome, eukary	100.0
3u5e_L	199	60S ribosomal protein L13-A, 60S ribosomal protein	100.0

>4a18_U RPL13, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_U 4a1b_U 4a1d_U

Probab=100.00  E-value=1.5e-99  Score=646.77  Aligned_cols=203  Identities=42%  Similarity=0.638  Sum_probs=199.8

Q ss_pred             CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624            1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK   80 (206)
Q Consensus         1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk   80 (206)
                      |+|||||||+|||||||++|+||||||++|.+||++|++||++|||||++ +|||||||||++||+++|+||||||+||+
T Consensus         1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcPT~rYn~kvR~GRGFsl~Elk   79 (206)
T 4a18_U            1 MKHNNQLPVAQLRKHQQFRIKTFFNQAAQKKARLHARRAQAAAVFPRPTE-KLQPVVRKQTQRYNKSTKLGRGFTLQELK   79 (206)
T ss_dssp             CCSSSCCCCCCSSSCGGGSCCCCTHHHHHHHHHHHHHHHHHHHHTTSCSS-CBCCEEECSSTTTTTSEEECSSBCHHHHH
T ss_pred             CCCCCcCCCccccchHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCCCcc-cccCceeCCcccccccccCCCCcCHHHHH
Confidence            89999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCC--CCChHHhhhhhhccCcccccCCC
Q 028624           81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAG--DSAPEELATATQVQGPYMPITLE  158 (206)
Q Consensus        81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkg--Ds~~ee~~~a~Q~~~~vmPi~~~  158 (206)
                      +|||+.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++||||  |||+||+++|+|++|.||||.+.
T Consensus        80 ~aGi~~~~A~tiGI~VD~RR~nkS~Esl~~Nv~rLk~y~sklIlFPrk~~k~kkG~~Dss~ee~k~a~q~~g~vmPi~~~  159 (206)
T 4a18_U           80 AAGISAAFAQSIGIKVDHRRKNRCQESLELNKKRLLAYVSKLVLFPRHQGKAKKGLVNDTADTSSAAQNALQTSVPLPSV  159 (206)
T ss_dssp             HHTCCHHHHHHHTBCBCTTCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCTTTTCCCTTHHHHCCCCCHHHHSCCCCC
T ss_pred             HcCCCHHHhcccCeeeccccccccHhHHHHHHHHHHHHHHheEEeeCcccccccCCCCCCHHHHHHHHHhcccccCccCc
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             CCcccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhh
Q 028624          159 KPTVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEE  204 (206)
Q Consensus       159 ~~~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~  204 (206)
                      ++.++++.||+||++|+||.+||+||+|++++|+|+|+|+++||+.
T Consensus       160 ~~~~~~r~it~eek~~~ay~~LR~ar~~~r~~G~R~Kra~e~ae~~  205 (206)
T 4a18_U          160 SKREKAVSNIAELRKKKVYRIIRQEKTNQKWDGKRKAKAQAAAEPK  205 (206)
T ss_dssp             CCCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccccccCChhhhcccHHHHHHHHHHhhHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999875

>3u5e_L 60S ribosomal protein L13-A, 60S ribosomal protein L11-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_L 4b6a_L

Probab=100.00  E-value=1.2e-93  Score=607.63  Aligned_cols=193  Identities=44%  Similarity=0.688  Sum_probs=189.7

Q ss_pred             CCcCCCCCCCcccccchhhhhhhcCCchhHHHHHHHHHHHHHhhCCCCCCCCCCCeeecCccccccccccCCCCCHHHHH
Q 028624            1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELK   80 (206)
Q Consensus         1 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~~R~~KA~~i~PrP~~g~lrPiVrcpt~ryn~k~r~GRGFsl~Elk   80 (206)
                      |+|||+|||+|||||||++|+||||||++|.+|+++|++||++|||||++ +|||||||||++||+++|+||||||+||+
T Consensus         3 ~k~Nn~ipn~HF~K~Wq~rVktwFnQp~rK~rRr~aR~~KA~~iaPrP~~-~LRPiVrcpT~rYn~kvR~GRGFsl~ELk   81 (199)
T 3u5e_L            3 ISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLD-LLRPVVRAPTVKYNRKVRAGRGFTLAEVK   81 (199)
T ss_dssp             CCSSCCCCCCCCCSSGGGGEEECTTHHHHHHHHHHHHHHHHHHTTTSCSS-CBCCEEECCHHHHTTSEEECSCCCHHHHH
T ss_pred             CCCCCcCCCccccchHHHHHhhhcCChhHHHHHHHHHHHHHHHhCCCCcc-cccCceecCcccccccccCCCCcCHHHHH
Confidence            68999999999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HcCCCCCcccccceeecccccccchhhHHHHHHHHHHHHhhhccccCccccccCCCCChHHhhhhhhccCcccccCCCCC
Q 028624           81 AAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKP  160 (206)
Q Consensus        81 ~aGi~~k~A~tiGI~VD~RRkn~S~Esl~~Nv~rLk~y~sklilfPrk~~kpkkgDs~~ee~~~a~Q~~~~vmPi~~~~~  160 (206)
                      +|||+.++|+||||+||+||+|+|+|||++|||||++|+|+|||||++.++|+||         |+|++|.||||.+.++
T Consensus        82 ~aGi~~k~A~tiGI~VD~RR~nks~Esl~~NVqrLk~y~sklilFPrk~~~~kkG---------atq~~g~vmPi~~~~~  152 (199)
T 3u5e_L           82 AAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQSKIIVFPRNGKAPEAE---------QVLSAAATFPIAQPAT  152 (199)
T ss_dssp             HTTCCHHHHHHTTBCCCTTCCCCBHHHHHHHHHHHHHHHHTEEECCSSSCCCCCC---------CCCCSTTTSCCCCCCC
T ss_pred             HcCCCHHHhcccCeeeccccccccHHHHHHHHHHHHHHHhheeEecccccccccc---------cccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999         7999999999999999


Q ss_pred             cccccccccccccchHHHHHHHHHhhchhhhhhhhHHHHHhhhhc
Q 028624          161 TVDLVKVTQDMKSFKAYDKLRIERANERHFGARLKKAAEAEKEEK  205 (206)
Q Consensus       161 ~~~~~~It~eek~~~ay~~LR~ar~~~r~~G~r~kra~~~ae~~~  205 (206)
                      .++++.||+|  +|+||.+||+||+|++++|+|+|+|+|+||+++
T Consensus       153 ~~~~r~it~e--~~~ay~~LR~ar~~~r~~G~R~Kra~e~ae~~~  195 (199)
T 3u5e_L          153 DVEARAVQDN--GESAFRTLRLARSEKKFRGIREKRAREKAEAEA  195 (199)
T ss_dssp             SCSEECCCCC--CCCSHHHHHHHHHHHHTHHHHHHHHHHHHCCC-
T ss_pred             cccccccChh--hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence            9999999999  999999999999999999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00