Citrus Sinensis ID: 028630

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKrkkgvtfgsfkvskeikfadkqpifpwgprfaksspqdIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLksfepavsptyteegdddgRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYaggfipaflfdnqelivtgSSAVLLFIMASYYR
Flexible Loop (DISEMBL)
mvkavyakkrkeaernndeataARLEKAYDKLMMEQLskrkkgvtfgsfkvskeikfadkqpifpWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKsfepavsptyteegdddgRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Low Complexity Region (SEG)
MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Disordered region (IsUnstruct)
******************************************GVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAV*************ALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY*
Disordered Region (DISOPRED)
*********************AARLEKAYDKLMME**************KVSKEIKFADKQPIFPW***FA**SPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPA**************ALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Disordered Region (DISEMBL)
********************TAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Disordered Region (DISPRO)
MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
225453038	285	PREDICTED: uncharacterized protein LOC10	1.0	0.722	0.757	9e-89
224144561	285	predicted protein [Populus trichocarpa]	0.995	0.719	0.756	6e-88
224123536	253	predicted protein [Populus trichocarpa]	1.0	0.814	0.757	3e-87
449465818	285	PREDICTED: uncharacterized protein LOC10	1.0	0.722	0.747	4e-87
358248094	282	uncharacterized protein LOC100814672 [Gl	0.927	0.677	0.769	2e-82
217075548	285	unknown [Medicago truncatula]	0.995	0.719	0.721	4e-81
356505987	282	PREDICTED: uncharacterized protein LOC10	0.927	0.677	0.759	1e-80
297849170	294	heat shock protein binding protein [Arab	0.995	0.697	0.692	1e-77
18390922	294	Chloroplast J-like domain 1-containing p	0.995	0.697	0.687	2e-77
21593057	294	unknown [Arabidopsis thaliana]	0.995	0.697	0.687	2e-77

>gi|225453038|ref|XP_002266453.1| PREDICTED: uncharacterized protein LOC100243269 [Vitis vinifera] gi|302143637|emb|CBI22390.3| unnamed protein product [Vitis vinifera]

 Score =  331 bits (849), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 183/206 (88%)

Query: 1   MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK 60
           M+KA Y +KRKEAER  DEATAARLEKAYDK+MM QL+ RKKG+TFGSFKVSK+IK+ADK
Sbjct: 80  MIKAAYTRKRKEAERKGDEATAARLEKAYDKVMMAQLTNRKKGMTFGSFKVSKDIKYADK 139

Query: 61  QPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKS 120
           QPI PW PRF KSS  D+RIN+AISA FTAWI IKR AE+KPLQFLAFA+VYR FEKLK+
Sbjct: 140 QPIVPWAPRFTKSSVNDMRINMAISAVFTAWILIKRNAEWKPLQFLAFAYVYRIFEKLKA 199

Query: 121 FEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPA 180
           FEP VSPT+TE+G+D+GR LRMGKRLLR LALVF  IAVSSL++TG+LNLIE+ G FIPA
Sbjct: 200 FEPPVSPTFTEDGEDEGRTLRMGKRLLRSLALVFSCIAVSSLSFTGLLNLIEFVGSFIPA 259

Query: 181 FLFDNQELIVTGSSAVLLFIMASYYR 206
           FL++NQELIV+ S+AV+L+IMASY+R
Sbjct: 260 FLYNNQELIVSASTAVMLYIMASYFR 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144561|ref|XP_002325333.1| predicted protein [Populus trichocarpa] gi|222862208|gb|EEE99714.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 182/205 (88%)

Query: 2   VKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ 61
           VKA Y KKRKEAE+  DEA AA+LEKAYDKLMM QLS RKKGVT+GSFKV+K+IK+ADKQ
Sbjct: 81  VKAAYEKKRKEAEKQGDEAAAAQLEKAYDKLMMAQLSNRKKGVTYGSFKVAKDIKYADKQ 140

Query: 62  PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSF 121
           P+ PWGPRFAKSS  D+RINLAISAAFTAWI IKR AEYKPLQFLAFAFVYR FEKLK+F
Sbjct: 141 PVVPWGPRFAKSSENDMRINLAISAAFTAWILIKRNAEYKPLQFLAFAFVYRIFEKLKTF 200

Query: 122 EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 181
           EP VSPTY+E+G+D+GR LR+GKR+LR LALVFG I  +SLAYTGILNLIE AG +IPAF
Sbjct: 201 EPPVSPTYSEDGEDEGRTLRLGKRILRALALVFGSITFASLAYTGILNLIEMAGSYIPAF 260

Query: 182 LFDNQELIVTGSSAVLLFIMASYYR 206
           L++NQEL++T +++ +L+I+ASYYR
Sbjct: 261 LYNNQELLITTATSAILYILASYYR 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123536|ref|XP_002319104.1| predicted protein [Populus trichocarpa] gi|222857480|gb|EEE95027.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 181/206 (87%)

Query: 1   MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK 60
           MVKA YAKKRKEA+   DE  AA+LEKAYDKLMM QLS RKKGVT+GSFKVSK+IK+ADK
Sbjct: 48  MVKAAYAKKRKEAQIEGDEVAAAQLEKAYDKLMMAQLSNRKKGVTYGSFKVSKDIKYADK 107

Query: 61  QPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKS 120
           QPI PWGPRF+KSS  D+RINLAIS AFTAWI IKR AEYKPLQFLAFAFVYR FEKLK+
Sbjct: 108 QPIVPWGPRFSKSSENDMRINLAISVAFTAWILIKRSAEYKPLQFLAFAFVYRIFEKLKA 167

Query: 121 FEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPA 180
           FEP VS TYTEEG+D+GR LR+GKR+LR LALVFG +A +SLAYTGILNLIE AG +IP 
Sbjct: 168 FEPPVSQTYTEEGEDEGRTLRLGKRILRSLALVFGSVAFASLAYTGILNLIEMAGSYIPV 227

Query: 181 FLFDNQELIVTGSSAVLLFIMASYYR 206
           FL++NQEL++T +++V+L+I+ASYYR
Sbjct: 228 FLYNNQELLITTATSVILYILASYYR 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465818|ref|XP_004150624.1| PREDICTED: uncharacterized protein LOC101213790 [Cucumis sativus]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 179/206 (86%)

Query: 1   MVKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK 60
           MVKA Y KKR+EAER  DEATAARLEKAYDK+MM Q + RKKGVTFGS KVSK+IK+AD 
Sbjct: 80  MVKAAYTKKRREAERIGDEATAARLEKAYDKVMMAQFTNRKKGVTFGSVKVSKDIKYADN 139

Query: 61  QPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKS 120
           QPI PWGPR +KSSP+D++IN+AISA FTAW+ IK  AEYKPLQFLAFAFVYR FEKLK+
Sbjct: 140 QPIVPWGPRSSKSSPRDMQINMAISAVFTAWVLIKGSAEYKPLQFLAFAFVYRIFEKLKA 199

Query: 121 FEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPA 180
           FEPAVSP++TE+G+D GR +RMGKRLLR LALVFG IAV SL YTGILN IE+ G +IP 
Sbjct: 200 FEPAVSPSFTEDGEDSGRGIRMGKRLLRSLALVFGCIAVISLGYTGILNFIEFLGNYIPE 259

Query: 181 FLFDNQELIVTGSSAVLLFIMASYYR 206
           FL++NQEL+VT SSA++L+IMASYYR
Sbjct: 260 FLYNNQELLVTSSSALMLYIMASYYR 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248094|ref|NP_001240067.1| uncharacterized protein LOC100814672 [Glycine max] gi|255638094|gb|ACU19361.1| unknown [Glycine max]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/191 (76%), Positives = 166/191 (86%)

Query: 16  NNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSP 75
           N DEATA+RLEKAYDKLMM QLS RKKGVTFGSFKVSKEIK+ADK P+ PWGPRF KSS 
Sbjct: 92  NGDEATASRLEKAYDKLMMAQLSNRKKGVTFGSFKVSKEIKYADKLPVIPWGPRFTKSSQ 151

Query: 76  QDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDD 135
            D+RINLAISA FTAWI +KR AEYKPLQFLAFAFVYR FEKLK+FE  V+P Y EEG+D
Sbjct: 152 NDMRINLAISAVFTAWILVKRSAEYKPLQFLAFAFVYRLFEKLKTFESPVTPKYNEEGED 211

Query: 136 DGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSA 195
            G  LRMGKRLLR LALVFG +A+SSLAYT ILN+IE+AGGFIP  L+++QELI+T SSA
Sbjct: 212 TGEGLRMGKRLLRSLALVFGCVAISSLAYTFILNIIEFAGGFIPTLLYNSQELIITTSSA 271

Query: 196 VLLFIMASYYR 206
           ++L+IMASYYR
Sbjct: 272 LMLYIMASYYR 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075548|gb|ACJ86134.1| unknown [Medicago truncatula]

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 170/205 (82%)

Query: 2   VKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ 61
           +KA Y KKRKE E   DE TA+RLEKAYDK+MM QLS RKKGVTFGSFKVSK+IK+ADKQ
Sbjct: 81  IKAAYTKKRKEVEIKGDEQTASRLEKAYDKVMMAQLSNRKKGVTFGSFKVSKDIKYADKQ 140

Query: 62  PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSF 121
           P+ PWGPRFAKSS  D+RINLAISA FTAWIA+ + AEYKPLQFLAFAFVYR FEKLKSF
Sbjct: 141 PVIPWGPRFAKSSENDMRINLAISAVFTAWIAVTQSAEYKPLQFLAFAFVYRLFEKLKSF 200

Query: 122 EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 181
           E   S T  E+G+D G  LRMGKRLLR LALVFG IAVSSLAYT  LN++E A G+IP+ 
Sbjct: 201 ESPKSSTINEDGEDPGEGLRMGKRLLRSLALVFGCIAVSSLAYTFALNIVESASGYIPSL 260

Query: 182 LFDNQELIVTGSSAVLLFIMASYYR 206
           L+++QELI+T SSA +LFI+ S+YR
Sbjct: 261 LYNSQELIITASSAFMLFILGSFYR 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505987|ref|XP_003521770.1| PREDICTED: uncharacterized protein LOC100805399 [Glycine max]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/191 (75%), Positives = 164/191 (85%)

Query: 16  NNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSP 75
           N DEATA+RLEKAYDKLMM QLS RKKGVTFGSFKVSKEIK+ADK P+ PWGPR  KSS 
Sbjct: 92  NGDEATASRLEKAYDKLMMAQLSNRKKGVTFGSFKVSKEIKYADKLPVIPWGPRLTKSSQ 151

Query: 76  QDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDD 135
            D+RINLAISA FTAWI +KR AEYKPLQFLAFAFVYR FEKLK+ E  V+P Y EEG+D
Sbjct: 152 NDMRINLAISAVFTAWILVKRSAEYKPLQFLAFAFVYRLFEKLKASESPVTPKYNEEGED 211

Query: 136 DGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSA 195
            G  LRMGKRLLR LALVFG +A+SSLAYT ILN+IE+AGGFIP  L+++QELI+T SSA
Sbjct: 212 TGEGLRMGKRLLRSLALVFGCVAISSLAYTFILNIIEFAGGFIPTLLYNSQELIITTSSA 271

Query: 196 VLLFIMASYYR 206
           ++L+IMASYYR
Sbjct: 272 LMLYIMASYYR 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849170|ref|XP_002892466.1| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata] gi|297338308|gb|EFH68725.1| heat shock protein binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/205 (69%), Positives = 165/205 (80%)

Query: 2   VKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ 61
           +K  Y +K K+A+R+ DEATAA LEKAYDKLM  QL  RKKGVTFGSFKVSK+IK+ADKQ
Sbjct: 90  IKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNRKKGVTFGSFKVSKDIKYADKQ 149

Query: 62  PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSF 121
           PI PWGPRF++SS  D+ INLAIS  F+AWIAIKR  EYKPLQF++F FVYR FEKLKSF
Sbjct: 150 PIIPWGPRFSRSSRNDMLINLAISVVFSAWIAIKRNVEYKPLQFMSFVFVYRIFEKLKSF 209

Query: 122 EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 181
           E   SP Y EEG++ GR LRMGKRLLR L+LVFG I V+SL YTG LN IEY G  IP  
Sbjct: 210 EAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILVASLVYTGFLNGIEYMGKSIPMV 269

Query: 182 LFDNQELIVTGSSAVLLFIMASYYR 206
           L++NQELIVT SSA +L+++ASYYR
Sbjct: 270 LYNNQELIVTASSAFMLYVIASYYR 294

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390922|ref|NP_563823.1| Chloroplast J-like domain 1-containing protein [Arabidopsis thaliana] gi|13877839|gb|AAK43997.1|AF370182_1 unknown protein [Arabidopsis thaliana] gi|16323504|gb|AAL15246.1| unknown protein [Arabidopsis thaliana] gi|332190204|gb|AEE28325.1| Chloroplast J-like domain 1-containing protein [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/205 (68%), Positives = 166/205 (80%)

Query: 2   VKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ 61
           +K  Y +K K+A+R+ DEATAA LEKAYDKLM  QL  RKKGVTFGSFKVSK+IK+ADKQ
Sbjct: 90  IKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNRKKGVTFGSFKVSKDIKYADKQ 149

Query: 62  PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSF 121
           PI PWGPRF++SS  D+ INLAIS  F+AWIAIKR  EYKPLQF++F FVYR FEKLKSF
Sbjct: 150 PIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEYKPLQFMSFVFVYRIFEKLKSF 209

Query: 122 EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 181
           E   SP Y EEG++ GR LRMGKRLLR L+LVFG I ++SLAYTG LN IEY G  IP  
Sbjct: 210 EAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLASLAYTGFLNGIEYMGYSIPMV 269

Query: 182 LFDNQELIVTGSSAVLLFIMASYYR 206
           L++NQELIVT SSA +L+++AS+YR
Sbjct: 270 LYNNQELIVTASSAFMLYVIASFYR 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593057|gb|AAM65006.1| unknown [Arabidopsis thaliana]

 Score =  293 bits (751), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/205 (68%), Positives = 166/205 (80%)

Query: 2   VKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ 61
           +K  Y +K K+A+R+ DEATAA LEKAYDKLM  QL  RKKGVTFGSFKVSK+IK+ADKQ
Sbjct: 90  IKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNRKKGVTFGSFKVSKDIKYADKQ 149

Query: 62  PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSF 121
           PI PWGPRF++SS  D+ INLAIS  F+AWIAIKR  EYKPLQF++F FVYR FEKLKSF
Sbjct: 150 PIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEYKPLQFMSFVFVYRIFEKLKSF 209

Query: 122 EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 181
           E   SP Y EEG++ GR LRMGKRLLR L+LVFG I ++SLAYTG LN IEY G  IP  
Sbjct: 210 EAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLASLAYTGFLNGIEYMGYSIPMV 269

Query: 182 LFDNQELIVTGSSAVLLFIMASYYR 206
           L++NQELIVT SSA +L+++AS+YR
Sbjct: 270 LYNNQELIVTASSAFMLYVIASFYR 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2025660	294	CJD1 "Chloroplast J-like domai	0.995	0.697	0.687	5.3e-72

TAIR|locus:2025660 CJD1 "Chloroplast J-like domain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 141/205 (68%), Positives = 166/205 (80%)

Query:     2 VKAVYAKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ 61
             +K  Y +K K+A+R+ DEATAA LEKAYDKLM  QL  RKKGVTFGSFKVSK+IK+ADKQ
Sbjct:    90 IKQTYGRKLKDAQRSGDEATAALLEKAYDKLMYAQLMNRKKGVTFGSFKVSKDIKYADKQ 149

Query:    62 PIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVYRFFEKLKSF 121
             PI PWGPRF++SS  D+ INLAIS  F+AWIAIKR  EYKPLQF++F FVYR FEKLKSF
Sbjct:   150 PIIPWGPRFSRSSKNDMLINLAISVVFSAWIAIKRNVEYKPLQFMSFVFVYRIFEKLKSF 209

Query:   122 EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 181
             E   SP Y EEG++ GR LRMGKRLLR L+LVFG I ++SLAYTG LN IEY G  IP  
Sbjct:   210 EAPSSPIYNEEGEESGRGLRMGKRLLRSLSLVFGSILLASLAYTGFLNGIEYMGYSIPMV 269

Query:   182 LFDNQELIVTGSSAVLLFIMASYYR 206
             L++NQELIVT SSA +L+++AS+YR
Sbjct:   270 LYNNQELIVTASSAFMLYVIASFYR 294


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       206   0.00097  111 3  11 22  0.43    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  144 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.85u 0.11s 17.96t   Elapsed:  00:00:01
  Total cpu time:  17.85u 0.11s 17.96t   Elapsed:  00:00:01
  Start:  Sat May 11 04:54:32 2013   End:  Sat May 11 04:54:33 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0031969 "chloroplast membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002215001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (245 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038716001	SubName- Full=Chromosome chr2 scaffold_97, whole genome shotgun sequence; (754 aa)				•	•		•		0.511
	GSVIVG00015711001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (371 aa)				•	•		•		0.508
	GSVIVG00024500001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (885 aa)					•				0.412

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam11833	193	pfam11833, DUF3353, Protein of unknown function (D	1e-09

>gnl|CDD|221252 pfam11833, DUF3353, Protein of unknown function (DUF3353)

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 45/212 (21%)

Query: 7   AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADKQ----- 61
           A+ R  AE   DE   A++E AYD ++M++L +R++G      KV + I++A++      
Sbjct: 12  ARNRLLAEYAGDEQARAKIEAAYDAILMQRLRERQEGKI----KVPEAIRYAERAGKPAA 67

Query: 62  -----PIFPW----GPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAFAFVY 112
                P   W     P F   S Q + I L +       + ++       LQ LA     
Sbjct: 68  SKPVNPSPAWLQRLLPSFDLPSGQGLLIRLVLFGLLALLLLLQGPPSGPQLQ-LALGTGA 126

Query: 113 RFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIE 172
             +     F                   R G+R  R L    G + V  L  + +  L+ 
Sbjct: 127 CIY-----FL-----------------NRKGRRFGRALLWSLGGLVVGLLLGSLLAVLL- 163

Query: 173 YAGGFIPAFLFDNQELIVTGSSAVLLFIMASY 204
                +P  L  + E I +  + +LL++ + +
Sbjct: 164 -PPFILPGSL--SPEQIQSLPAYLLLWLGSLF 192

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	100.0
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	90.45
COG4858	226	Uncharacterized membrane-bound protein conserved i	89.86

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=100.00  E-value=8.6e-49  Score=332.70  Aligned_cols=166  Identities=33%  Similarity=0.488  Sum_probs=148.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccchhcccc-----------CCCCCCCCC----cC
Q 028630            7 AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVTFGSFKVSKEIKFADK-----------QPIFPWGPR----FA   71 (206)
Q Consensus         7 ar~~l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~~Gki~V~~~ir~ad~-----------~~~~PW~~r----~~   71 (206)
                      |||++++||+||++++|+||+|||+|||+||++||+    ||||||++|||+|+           .+.+||++|    ++
T Consensus        12 Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~----Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~~~~~~~~   87 (194)
T PF11833_consen   12 ARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQK----GKIKVPERIRYADREEPKPPNPKPSNPSPPWLQRLLPSFD   87 (194)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc----CCCCccHHHHHhhhccccccCCCCCCccchHHHhccccee
Confidence            699999999999999999999999999999999999    89999999999998           233469988    59


Q ss_pred             CCChHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH--HHHHHHHHhhhccCCCCCCCCCCCCCCccchhhhhhhhHHHH
Q 028630           72 KSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLA--FAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRC  149 (206)
Q Consensus        72 ~Ps~~di~~~~ai~~~l~~w~~~~~~~~~~~lq~la--~a~iYfl~~K~k~~~p~~~~~~~~~~~~~gRa~~~~~rll~~  149 (206)
                      +|+.+||.+++++|++|++|+++.+.+++|+||+++  ++||||+|+|++++               |||+     ++++
T Consensus        88 ~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~---------------~rA~-----~~~~  147 (194)
T PF11833_consen   88 TPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKL---------------GRAF-----LWTL  147 (194)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchH---------------HHHH-----HHHH
Confidence            999999999999999999999996577999999444  88999999999999               9999     9999


Q ss_pred             HHHHHHHHHHHhhhhcchhhhhhccCCcCCccccchhHHHHHHHHHHHHHHHhhcc
Q 028630          150 LALVFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYY  205 (206)
Q Consensus       150 ~~Lv~G~i~gs~l~~t~~l~~i~~~g~~~p~~~~~~~E~~vs~~~~v~L~l~ssfl  205 (206)
                      ++|++||++|++|+  +|++.     ..+|..+  +.|+++|++++++||++|+||
T Consensus       148 ~~L~~G~~lGs~l~--~~l~~-----~~~p~~~--s~~~~~sl~~~i~lwl~s~fL  194 (194)
T PF11833_consen  148 GGLVVGLILGSLLA--SWLPV-----DIVPGPW--SPEQLVSLFTYILLWLVSLFL  194 (194)
T ss_pred             HHHHHHHHHHHHHH--hhccc-----ccCCCCC--CHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999998  78742     1122111  679999999999999999997

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=90.45  E-value=7.8  Score=32.90  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 028630            7 AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVT   45 (206)
Q Consensus         7 ar~~l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~   45 (206)
                      .++++.+.-..|++..+-+|...|.+    +..-++|+|
T Consensus        13 l~~~L~~~~~~e~~~e~~L~eil~~L----leaQk~G~t   47 (206)
T PF06570_consen   13 LRKYLRSSGVSEEEIEELLEEILPHL----LEAQKKGKT   47 (206)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHH----HHHHhCCCc
Confidence            45566544555555555555555555    455677665

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]

Probab=89.86  E-value=13  Score=32.68  Aligned_cols=92  Identities=26%  Similarity=0.326  Sum_probs=55.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCC-------cccccchhccc-cCCCCCCCCCcCCCC
Q 028630            7 AKKRKEAERNNDEATAARLEKAYDKLMMEQLSKRKKGVT----FGS-------FKVSKEIKFAD-KQPIFPWGPRFAKSS   74 (206)
Q Consensus         7 ar~~l~~~~~~d~~~~~~IEaAYD~IlM~~L~~R~~g~~----~Gk-------i~V~~~ir~ad-~~~~~PW~~r~~~Ps   74 (206)
                      +-|+++...+.||+...-+|.+..+||-+|    +||.|    ||.       ++++...|.+. .+.-.||+=-+|.+ 
T Consensus        27 vtkqli~~gksdeeik~Il~e~ipqIleeQ----kkGitARkL~gtPTe~v~sf~~k~~~kaa~~ekNtdp~lm~lDss-  101 (226)
T COG4858          27 VTKQLIGDGKSDEEIKIILEEMIPQILEEQ----KKGITARKLLGTPTEWVVSFDPKVAVKAAPVEKNTDPWLMWLDSS-  101 (226)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhh----hccchHHHHcCCchHHHhhcCcchhcccCCcccCCCceEEEeccc-
Confidence            346788888999999999999999998765    44433    231       12222233332 12334888777763 


Q ss_pred             hHHHHHHHHHHHHHHHHhhh-cCCCCchHHHHHH
Q 028630           75 PQDIRINLAISAAFTAWIAI-KRYAEYKPLQFLA  107 (206)
Q Consensus        75 ~~di~~~~ai~~~l~~w~~~-~~~~~~~~lq~la  107 (206)
                         +. -.++++.+.+.+.+ +.++.+.+++.+.
T Consensus       102 ---Ll-~lg~~aLlsgitaff~~nA~~~GlItll  131 (226)
T COG4858         102 ---LL-FLGAMALLSGITAFFQKNAQVYGLITLL  131 (226)
T ss_pred             ---HH-HHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence               22 33445555556655 6677777777644

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 40/227 (17%), Positives = 64/227 (28%), Gaps = 67/227 (29%)

Query: 1   MVKAVYAKKRKEAERNNDEATA---ARLEKAYDKL--MMEQLSKRKKGVT----FGSFK- 50
           M+  +Y ++R     +N        +RL+  Y KL   + +L +  K V      GS K 
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLEL-RPAKNVLIDGVLGSGKT 164

Query: 51  -----VSKEIKFADKQP--IFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAE---- 99
                V    K   K    IF                          W+ +K        
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF--------------------------WLNLKNCNSPETV 198

Query: 100 YKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAV 159
            + LQ L +     +  +                  + R L   K    CL LV     +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCL-LV-----L 250

Query: 160 SSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 206
            ++      N          AF    + L+ T    V  F+ A+   
Sbjct: 251 LNVQNAKAWN----------AFNLSCKILLTTRFKQVTDFLSAATTT 287

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00