Citrus Sinensis ID: 028653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Secondary Structure (PSIPRED)
cccccccHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mmgqksylatraggvtsDLISSDMKELVVAAKKLADHSVdaiklrglgfgTTFLEWVASFAAIYLLILDRTNWRTNILTgllipyiffslpslIFNVFRGDVGKWIAFIAIILRLffprhfpdwlEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHirasggfrnsftkahgvsnSVGIIILVVYPAWALVLYIL
Flexible Loop (DISEMBL)
mmgqksylatraggvtsdLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Low Complexity Region (SEG)
MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWiafiaiilrlffPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Disordered region (IsUnstruct)
*****************DLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYI*
Disordered Region (DISOPRED)
************GGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Disordered Region (DISEMBL)
MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Disordered Region (DISPRO)
*****SYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILVVYPAWALVLYIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q9SVL6	203	Cold-regulated 413 plasma	yes	no	0.980	0.995	0.665	6e-75
O23164	202	Cold-regulated 413 plasma	no	no	0.980	1.0	0.6	2e-69
Q9XIM7	197	Cold-regulated 413 plasma	no	no	0.902	0.944	0.677	1e-65
O64834	189	Cold-regulated 413 plasma	no	no	0.713	0.777	0.490	4e-34
F4I1G5	226	Cold-regulated 413 inner	no	no	0.650	0.592	0.316	1e-10
Q94AL8	225	Cold-regulated 413 inner	no	no	0.582	0.533	0.314	4e-10

>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1

 Score =  280 bits (715), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 137/206 (66%), Positives = 167/206 (81%), Gaps = 4/206 (1%)

Query: 2   MGQKSYLATRAGGV-TSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           MG+  YLA +   V T  L++SDM+EL VAAKKL     D  KL GLGFG +FL+++ASF
Sbjct: 1   MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFS---DVSKLGGLGFGVSFLKFLASF 57

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNW+T +LT LLIPYIF SLPS+IFN   GDVGKWIAF+A++LRLFFP+H
Sbjct: 58  AAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKH 117

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           FPDWLEMP +LILL+VV+P   A +IR +WIG VI L I CYLLQEHIRASGGFRNSFT+
Sbjct: 118 FPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQ 177

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
             GVSN++GII+L+VYP WAL++ ++
Sbjct: 178 PRGVSNTLGIILLLVYPVWALIVRVM 203

Arabidopsis thaliana (taxid: 3702)

>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g37220 PE=2 SV=2

 Score =  261 bits (668), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 123/205 (60%), Positives = 157/205 (76%), Gaps = 3/205 (1%)

Query: 2   MGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFA 61
           MG+  +LA +     ++LI+SDM E V AAKKL     D   L G+GFGT+ L+W AS  
Sbjct: 1   MGRGEFLAMKTEENAANLINSDMNEFVAAAKKLVK---DVGMLGGVGFGTSVLQWAASIF 57

Query: 62  AIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHF 121
           AIYLLILDRTNW+T +LT LL+PYIFF+LPS+IF  F GD GKWIA IAII+RLFFP+ F
Sbjct: 58  AIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEF 117

Query: 122 PDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKA 181
           P+WLE+P ALIL++VV+PSL A  +R SW+G VICL IACYL  EHI+ASGGF+NSFT+ 
Sbjct: 118 PEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQK 177

Query: 182 HGVSNSVGIIILVVYPAWALVLYIL 206
           +G+SN++GI+ L+VYP W +  +I 
Sbjct: 178 NGISNTIGIVALLVYPVWTIFFHIF 202

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana GN=COR413PM1 PE=1 SV=1

 Score =  249 bits (636), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 155/189 (82%), Gaps = 3/189 (1%)

Query: 14  GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNW 73
           G    +I SD  EL +AAK LA H   A  L GLGFGT+ LEWVAS AAIYLL+LDRTNW
Sbjct: 11  GTLKAMIGSDFNELTIAAKNLATH---AFTLTGLGFGTSVLEWVASIAAIYLLVLDRTNW 67

Query: 74  RTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALIL 133
           +TN+LT LLIPYIFFSLPSLIF +FRG++GKWIAF+A++++LFFP+H  ++LE+P AL+L
Sbjct: 68  KTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVL 127

Query: 134 LIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIIL 193
           L VVAP+L A   R SWIG+ ICL I CYLLQEHIRASGGFRN+FTKA+G+SN+VGII L
Sbjct: 128 LAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGIICL 187

Query: 194 VVYPAWALV 202
           VV+P WAL+
Sbjct: 188 VVFPVWALI 196

Arabidopsis thaliana (taxid: 3702)

>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana GN=At2g23680 PE=2 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 99/151 (65%), Gaps = 4/151 (2%)

Query: 51  TTFLEWVASFAAIYLLILDRTNWR--TNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAF 108
           T FL W+AS  A++L+ILD+T W+   NI+  LL PY+F SLP +IF V R  VGKWIA 
Sbjct: 28  TLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIAL 87

Query: 109 IAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSS--WIGVVICLAIACYLLQE 166
           + +ILRLF P HF + LE+P A ILLIVV PS   +  R    + G  +CL  + YL+ +
Sbjct: 88  LTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINK 147

Query: 167 HIRASGGFRNSFTKAHGVSNSVGIIILVVYP 197
           H +A GG +NSFT+   V+ S+ + IL VYP
Sbjct: 148 HTKACGGIKNSFTQKDKVTYSICLWILFVYP 178

Arabidopsis thaliana (taxid: 3702)

>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 54  LEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIIL 113
           L+W+++ + + L+    T     I    ++P      P  I +  +G+ G W AF+A++ 
Sbjct: 86  LQWISTISCVALMFARGTG----IHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLT 141

Query: 114 RLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGG 173
           RLFF   FP  LE+P   +LL++VAP    S IR    G ++ LAI+C+L  +H   +G 
Sbjct: 142 RLFF--SFPVELELPFIALLLVIVAPYQVMS-IRGKQEGAILSLAISCFLAFQHFSRAGT 198

Query: 174 FRNSFTKAHGVSNSVGIIILVV 195
            + +F + + V  +V II + V
Sbjct: 199 LQKAFDQ-NSVLATVAIIGVTV 219

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 54  LEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIIL 113
           L+W+++ + + L++   T     I   +++P      PS I    +G+ G W AF+A+I 
Sbjct: 85  LQWISTISCLALMLARGTG----IHKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIA 140

Query: 114 RLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGG 173
           RLFF   FP  LE+P   +LL++VAP    + IR    G +I +AI+ +L  +H   +G 
Sbjct: 141 RLFFT--FPGELELPFIALLLVIVAPYQVMN-IRGKQEGAIIAIAISGFLAFQHFSRAGS 197

Query: 174 FRNSFTK 180
              ++ K
Sbjct: 198 LEKAYEK 204

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
357435249	206	WCOR413-like protein [Citrus limon]	1.0	1.0	0.995	1e-112
357435247	206	WCOR413-like protein [Citrus japonica]	1.0	1.0	0.975	1e-110
357435245	206	WCOR413-like protein [Citrus trifoliata]	1.0	1.0	0.966	1e-109
156567559	206	cold acclimation WCOR413-like protein [C	1.0	1.0	0.951	1e-107
255556173	202	COR413-PM2, putative [Ricinus communis]	0.980	1.0	0.804	2e-90
224105477	203	predicted protein [Populus trichocarpa]	0.980	0.995	0.771	4e-87
225428596	202	PREDICTED: uncharacterized protein LOC10	0.980	1.0	0.770	4e-86
118484000	204	unknown [Populus trichocarpa]	0.985	0.995	0.763	2e-85
118484282	203	unknown [Populus trichocarpa] gi|1184887	0.980	0.995	0.766	2e-85
224077782	195	predicted protein [Populus trichocarpa]	0.917	0.969	0.791	2e-83

>gi|357435249|gb|AET79924.1| WCOR413-like protein [Citrus limon]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/206 (99%), Positives = 205/206 (99%)

Query: 1   MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF
Sbjct: 1   MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNWRTNILTGLLIPYIFF LPSLIFNVFRGDVGKWIAFIAIILRLFFPRH
Sbjct: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFCLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK
Sbjct: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
           AHGVSNSVGIIILVVYPAWALVLYIL
Sbjct: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357435247|gb|AET79923.1| WCOR413-like protein [Citrus japonica]

 Score =  402 bits (1032), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/206 (97%), Positives = 204/206 (99%)

Query: 1   MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           MMG+KSYLA RAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF
Sbjct: 1   MMGKKSYLAMRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNWR+NILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH
Sbjct: 61  AAIYLLILDRTNWRSNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           FPDWLEMPAALILLIVVAPSLFASY+RSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK
Sbjct: 121 FPDWLEMPAALILLIVVAPSLFASYVRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
           AHGVSNSVGIIILVVYPAWALVL IL
Sbjct: 181 AHGVSNSVGIIILVVYPAWALVLDIL 206

Source: Citrus japonica

Species: Citrus japonica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357435245|gb|AET79922.1| WCOR413-like protein [Citrus trifoliata]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/206 (96%), Positives = 203/206 (98%)

Query: 1   MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           MMG+KSYLA RAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF
Sbjct: 1   MMGKKSYLAMRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIA+I+RLFFPR 
Sbjct: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAVIVRLFFPRR 120

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           F DWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSF+K
Sbjct: 121 FADWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFSK 180

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
           AHGVSNSVGIIILVVYPAWALVLYIL
Sbjct: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156567559|gb|ABU82739.1| cold acclimation WCOR413-like protein [Citrus trifoliata]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/206 (95%), Positives = 201/206 (97%)

Query: 1   MMGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           MMG+KSYLA RAGGVTSDLISSDMKELVVAA+ LADHSVDAIKLRGLGFGTTFLEWVASF
Sbjct: 1   MMGKKSYLAMRAGGVTSDLISSDMKELVVAAEMLADHSVDAIKLRGLGFGTTFLEWVASF 60

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIA+I+RLFFPR 
Sbjct: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAVIVRLFFPRR 120

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           F DWLEMPAALILLIVVAPSLFASY RSSWIGVVICLAIACYLLQEHIRASGGFRNSF+K
Sbjct: 121 FADWLEMPAALILLIVVAPSLFASYTRSSWIGVVICLAIACYLLQEHIRASGGFRNSFSK 180

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
           AHGVSNSVGIIILVVYPAWALVLYIL
Sbjct: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556173|ref|XP_002519121.1| COR413-PM2, putative [Ricinus communis] gi|223541784|gb|EEF43332.1| COR413-PM2, putative [Ricinus communis]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/205 (80%), Positives = 187/205 (91%), Gaps = 3/205 (1%)

Query: 2   MGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFA 61
           MG+KSYLA R    TS+LI SD+K+L +AAKKLA+H   AIKL GLGFGT+FLEW+ASFA
Sbjct: 1   MGKKSYLAMRTEQATSELIVSDIKDLKIAAKKLANH---AIKLGGLGFGTSFLEWIASFA 57

Query: 62  AIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHF 121
           AIYLLILDRTNWRTNILTGLLIPYIFFSLPS++F++FRGD+GKWIAF+A+ILRLFFPR F
Sbjct: 58  AIYLLILDRTNWRTNILTGLLIPYIFFSLPSILFSLFRGDLGKWIAFVAVILRLFFPRRF 117

Query: 122 PDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKA 181
           PDWLEMPAALILLIVVAPSLFAS +RSSW+G+ ICLAIA YLLQEHIRASGGFRNSFTKA
Sbjct: 118 PDWLEMPAALILLIVVAPSLFASTLRSSWVGLAICLAIAAYLLQEHIRASGGFRNSFTKA 177

Query: 182 HGVSNSVGIIILVVYPAWALVLYIL 206
           HG+SN++GII+L VYP WALVL IL
Sbjct: 178 HGISNTIGIILLFVYPVWALVLDIL 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105477|ref|XP_002313824.1| predicted protein [Populus trichocarpa] gi|222850232|gb|EEE87779.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 159/206 (77%), Positives = 186/206 (90%), Gaps = 4/206 (1%)

Query: 2   MGQKSYLATRAG-GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           MG+KSYLA R   G+ S L++SD ++L  AAKKLA+H   A+KL GLGFGTTFLEW+A+F
Sbjct: 1   MGKKSYLAMRRDQGMESSLLASDFQDLTNAAKKLANH---AVKLGGLGFGTTFLEWIAAF 57

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNW+TNILTGLLIPYIFF+LPS++F++ RGDVGKWIAF+A+ILRLFFP+ 
Sbjct: 58  AAIYLLILDRTNWKTNILTGLLIPYIFFTLPSILFSLLRGDVGKWIAFVAVILRLFFPKR 117

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           FPDWLEMP ALILLIVVAPSLFAS IR++WIGV ICLAIACYLLQEHIRASGGFRNSFTK
Sbjct: 118 FPDWLEMPGALILLIVVAPSLFASTIRNNWIGVAICLAIACYLLQEHIRASGGFRNSFTK 177

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
           AHG+SN+VGII+L VYPAWAL++ +L
Sbjct: 178 AHGISNTVGIILLFVYPAWALLIDLL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428596|ref|XP_002284722.1| PREDICTED: uncharacterized protein LOC100248690 [Vitis vinifera] gi|297741399|emb|CBI32530.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 158/205 (77%), Positives = 180/205 (87%), Gaps = 3/205 (1%)

Query: 2   MGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFA 61
           MG+K YLA R    T+DLISSD+++L  AAKKLA H   AIKL GLGFGTTFLEW+ASFA
Sbjct: 1   MGKKGYLAMRTDTDTTDLISSDLRDLGNAAKKLATH---AIKLGGLGFGTTFLEWLASFA 57

Query: 62  AIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHF 121
           AIYLLILDRTNW+TNILT LLIPYIFFSLPS++FN F G VGKWIAFIA++LRLFFP+ F
Sbjct: 58  AIYLLILDRTNWKTNILTALLIPYIFFSLPSILFNFFSGQVGKWIAFIAVVLRLFFPKRF 117

Query: 122 PDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKA 181
           PDWLEMPAALIL+IVVAPSLF+S IR  WIG+VICLAI CYLLQEHIRASGGFRNSFT+ 
Sbjct: 118 PDWLEMPAALILVIVVAPSLFSSTIRGDWIGLVICLAIGCYLLQEHIRASGGFRNSFTQR 177

Query: 182 HGVSNSVGIIILVVYPAWALVLYIL 206
           HG+SNS+G+I+L+VYP WALVL+ L
Sbjct: 178 HGISNSIGLILLLVYPVWALVLHFL 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484000|gb|ABK93887.1| unknown [Populus trichocarpa]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 158/207 (76%), Positives = 182/207 (87%), Gaps = 4/207 (1%)

Query: 1   MMGQKSYLATRAGG-VTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVAS 59
           M  +K YLA R    + S LI+SD ++   AAKKLA+H   AIKL GLGFGTTFL+W+AS
Sbjct: 1   MEKKKGYLAMRTDQEMASGLITSDFQDFANAAKKLANH---AIKLGGLGFGTTFLQWIAS 57

Query: 60  FAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPR 119
           FAAIYLLILDRTNW+TNILTGLLIPYIFF+LPS++FNVFRG +G+WIAF+A+ILRLFFP+
Sbjct: 58  FAAIYLLILDRTNWKTNILTGLLIPYIFFTLPSILFNVFRGQIGRWIAFVALILRLFFPK 117

Query: 120 HFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFT 179
           HFPDWLE+P+ALILLIVVAPSLFAS IR+ WIGVVICL IACYLLQEHIRA GGFRNSFT
Sbjct: 118 HFPDWLELPSALILLIVVAPSLFASTIRNDWIGVVICLVIACYLLQEHIRACGGFRNSFT 177

Query: 180 KAHGVSNSVGIIILVVYPAWALVLYIL 206
           KA+G+SN VGII+L VYPAWA+VLYIL
Sbjct: 178 KANGISNIVGIILLFVYPAWAIVLYIL 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484282|gb|ABK94020.1| unknown [Populus trichocarpa] gi|118488747|gb|ABK96184.1| unknown [Populus trichocarpa]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 158/206 (76%), Positives = 182/206 (88%), Gaps = 4/206 (1%)

Query: 2   MGQKSYLATRAGG-VTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
           M +K YLA R    + S LI+SD ++   AAKKLA+H   AIKL GLGFGTTFL+W+ASF
Sbjct: 1   MEKKGYLAMRRDQEMASGLITSDFQDFANAAKKLANH---AIKLGGLGFGTTFLQWIASF 57

Query: 61  AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRH 120
           AAIYLLILDRTNW+TNILTGLLIPYIFF+LPS++FNVFRG +G+WIAF+A+ILRLFFP+H
Sbjct: 58  AAIYLLILDRTNWKTNILTGLLIPYIFFTLPSILFNVFRGQIGRWIAFVALILRLFFPKH 117

Query: 121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
           FPDWLE+P+ALILLIVVAPSLFAS IR+ WIGVVICL IACYLLQEHIRA GGFRNSFTK
Sbjct: 118 FPDWLELPSALILLIVVAPSLFASTIRNDWIGVVICLVIACYLLQEHIRACGGFRNSFTK 177

Query: 181 AHGVSNSVGIIILVVYPAWALVLYIL 206
           A+G+SN VGII+L VYPAWA+VLYIL
Sbjct: 178 ANGISNIVGIILLFVYPAWAVVLYIL 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077782|ref|XP_002305406.1| predicted protein [Populus trichocarpa] gi|222848370|gb|EEE85917.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (802), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/192 (79%), Positives = 175/192 (91%), Gaps = 3/192 (1%)

Query: 15  VTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWR 74
           + S LI+SD ++   AAKKLA+H   AIKL GLGFGTTFL+W+ASFAAIYLLILDRTNW+
Sbjct: 7   MASGLITSDFQDFANAAKKLANH---AIKLGGLGFGTTFLQWIASFAAIYLLILDRTNWK 63

Query: 75  TNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILL 134
           TNILTGLLIPYIFF+LPS++FNVFRG +G+WIAF+A+ILRLFFP+HFPDWLE+P+ALILL
Sbjct: 64  TNILTGLLIPYIFFTLPSILFNVFRGQIGRWIAFVALILRLFFPKHFPDWLELPSALILL 123

Query: 135 IVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIILV 194
           IVVAPSLFAS IR+ WIGVVICL IACYLLQEHIRA GGFRNSFTKA+G+SN VGII+L 
Sbjct: 124 IVVAPSLFASTIRNDWIGVVICLVIACYLLQEHIRACGGFRNSFTKANGISNIVGIILLF 183

Query: 195 VYPAWALVLYIL 206
           VYPAWA+VLYIL
Sbjct: 184 VYPAWAIVLYIL 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2077982	203	COR413-PM2 "AT3G50830" [Arabid	0.980	0.995	0.621	3.7e-64
TAIR|locus:2044641	197	COR413-PM1 "AT2G15970" [Arabid	0.902	0.944	0.640	8.8e-63
TAIR|locus:2115010	202	AT4G37220 "AT4G37220" [Arabido	0.975	0.995	0.553	2.2e-59
TAIR|locus:2049003	189	AT2G23680 "AT2G23680" [Arabido	0.752	0.820	0.425	1.6e-29
TAIR|locus:2013743	226	COR314-TM2 "AT1G29390" [Arabid	0.650	0.592	0.267	5.2e-08
TAIR|locus:505006154	225	COR413IM1 "AT1G29395" [Arabido	0.650	0.595	0.274	2.2e-07

TAIR|locus:2077982 COR413-PM2 "AT3G50830" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 128/206 (62%), Positives = 155/206 (75%)

Query:     2 MGQKSYLATRAGGV-TSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASF 60
             MG+  YLA +   V T  L++SDM+EL VAAKKL     D  KL GLGFG +FL+++ASF
Sbjct:     1 MGRMDYLAMKTDDVDTVALVNSDMEELKVAAKKLFS---DVSKLGGLGFGVSFLKFLASF 57

Query:    61 AAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWXXXXXXXXXXXXPRH 120
             AAIYLLILDRTNW+T +LT LLIPYIF SLPS+IFN   GDVGKW            P+H
Sbjct:    58 AAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKH 117

Query:   121 FPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTK 180
             FPDWLEMP +LILL+VV+P   A +IR +WIG VI L I CYLLQEHIRASGGFRNSFT+
Sbjct:   118 FPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQ 177

Query:   181 AHGVSNSVGIIILVVYPAWALVLYIL 206
               GVSN++GII+L+VYP WAL++ ++
Sbjct:   178 PRGVSNTLGIILLLVYPVWALIVRVM 203

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2044641 COR413-PM1 "AT2G15970" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 121/189 (64%), Positives = 143/189 (75%)

Query:    14 GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNW 73
             G    +I SD  EL +AAK LA H   A  L GLGFGT+ LEWVAS AAIYLL+LDRTNW
Sbjct:    11 GTLKAMIGSDFNELTIAAKNLATH---AFTLTGLGFGTSVLEWVASIAAIYLLVLDRTNW 67

Query:    74 RTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWXXXXXXXXXXXXPRHFPDWLEMPAALIL 133
             +TN+LT LLIPYIFFSLPSLIF +FRG++GKW            P+H  ++LE+P AL+L
Sbjct:    68 KTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVL 127

Query:   134 LIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNSVGIIIL 193
             L VVAP+L A   R SWIG+ ICL I CYLLQEHIRASGGFRN+FTKA+G+SN+VGII L
Sbjct:   128 LAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGIICL 187

Query:   194 VVYPAWALV 202
             VV+P WAL+
Sbjct:   188 VVFPVWALI 196

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0009631 "cold acclimation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0005773 "vacuole" evidence=IDA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2115010 AT4G37220 "AT4G37220" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 113/204 (55%), Positives = 146/204 (71%)

Query:     2 MGQKSYLATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFA 61
             MG+  +LA +     ++LI+SDM E V AAKKL     D   L G+GFGT+ L+W AS  
Sbjct:     1 MGRGEFLAMKTEENAANLINSDMNEFVAAAKKLVK---DVGMLGGVGFGTSVLQWAASIF 57

Query:    62 AIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWXXXXXXXXXXXXPRHF 121
             AIYLLILDRTNW+T +LT LL+PYIFF+LPS+IF  F GD GKW            P+ F
Sbjct:    58 AIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEF 117

Query:   122 PDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKA 181
             P+WLE+P ALIL++VV+PSL A  +R SW+G VICL IACYL  EHI+ASGGF+NSFT+ 
Sbjct:   118 PEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQK 177

Query:   182 HGVSNSVGIIILVVYPAWALVLYI 205
             +G+SN++GI+ L+VYP W +  +I
Sbjct:   178 NGISNTIGIVALLVYPVWTIFFHI 201

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP;RCA

TAIR|locus:2049003 AT2G23680 "AT2G23680" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 69/162 (42%), Positives = 96/162 (59%)

Query:    51 TTFLEWVASFAAIYLLILDRTNWR--TNILTGLLIPYIFFSLPSLIFNVFRGDVGKWXXX 108
             T FL W+AS  A++L+ILD+T W+   NI+  LL PY+F SLP +IF V R  VGKW   
Sbjct:    28 TLFLRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIAL 87

Query:   109 XXXXXXXXXPRHFPDWLEMPAALILLIVVAPSLFASYIRSS--WIGVVICLAIACYLLQE 166
                      P HF + LE+P A ILLIVV PS   +  R    + G  +CL  + YL+ +
Sbjct:    88 LTVILRLFLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINK 147

Query:   167 HIRASGGFRNSFTKAHGVSNSVGIIILVVYP---AWALVLYI 205
             H +A GG +NSFT+   V+ S+ + IL VYP   ++A + Y+
Sbjct:   148 HTKACGGIKNSFTQKDKVTYSICLWILFVYPILSSFAALFYL 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2013743 COR314-TM2 "AT1G29390" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 5.2e-08, P = 5.2e-08
 Identities = 38/142 (26%), Positives = 66/142 (46%)

Query:    54 LEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWXXXXXXXX 113
             L+W+++ + + L+    T     I    ++P      P  I +  +G+ G W        
Sbjct:    86 LQWISTISCVALMFARGTG----IHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLT 141

Query:   114 XXXXPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGG 173
                    FP  LE+P   +LL++VAP    S IR    G ++ LAI+C+L  +H   +G 
Sbjct:   142 RLFFS--FPVELELPFIALLLVIVAPYQVMS-IRGKQEGAILSLAISCFLAFQHFSRAGT 198

Query:   174 FRNSFTKAHGVSNSVGIIILVV 195
              + +F + + V  +V II + V
Sbjct:   199 LQKAFDQ-NSVLATVAIIGVTV 219

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:505006154 COR413IM1 "AT1G29395" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 39/142 (27%), Positives = 66/142 (46%)

Query:    54 LEWVASFAAIYLLILDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWXXXXXXXX 113
             L+W+++ + + L+ L R    T I   +++P      PS I    +G+ G W        
Sbjct:    85 LQWISTISCLALM-LARG---TGIHKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIA 140

Query:   114 XXXXPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGG 173
                    FP  LE+P   +LL++VAP    + IR    G +I +AI+ +L  +H   +G 
Sbjct:   141 RLFFT--FPGELELPFIALLLVIVAPYQVMN-IRGKQEGAIIAIAISGFLAFQHFSRAGS 197

Query:   174 FRNSFTKAHGVSNSVGIIILVV 195
                ++ K   V  +V II + V
Sbjct:   198 LEKAYEKG-SVLATVAIIGVTV 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.444    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      206       194   0.00076  111 3  11 22  0.36    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  167 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.31u 0.14s 14.45t   Elapsed:  00:00:01
  Total cpu time:  14.31u 0.14s 14.45t   Elapsed:  00:00:01
  Start:  Sat May 11 05:51:45 2013   End:  Sat May 11 05:51:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS;IDA

GO:0009631 "cold acclimation" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0031357 "integral to chloroplast inner membrane" evidence=IDA

GO:0070417 "cellular response to cold" evidence=IEP

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SVL6	CRPM2_ARATH	No assigned EC number	0.6650	0.9805	0.9950	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_IX0279 hypothetical protein (204 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
pfam05562	186	pfam05562, WCOR413, Cold acclimation protein WCOR4	1e-100

>gnl|CDD|191305 pfam05562, WCOR413, Cold acclimation protein WCOR413

 Score =  286 bits (734), Expect = e-100
 Identities = 135/187 (72%), Positives = 155/187 (82%), Gaps = 3/187 (1%)

Query: 8   LATRAGGVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLI 67
           + T A    + L+SSD++EL  AAKKLA H   AIKL GLGFGTTFL+W+AS AAIYLLI
Sbjct: 3   MKTDASEAAAALLSSDLQELGAAAKKLASH---AIKLGGLGFGTTFLQWLASIAAIYLLI 59

Query: 68  LDRTNWRTNILTGLLIPYIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEM 127
           LDRTNW+TNILT LL+PYIF SLPS+IF+  RG+VGKWIAFIA+I+RLFFPRHFP  LE+
Sbjct: 60  LDRTNWKTNILTSLLVPYIFLSLPSVIFSWIRGEVGKWIAFIAVIVRLFFPRHFPGELEL 119

Query: 128 PAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLLQEHIRASGGFRNSFTKAHGVSNS 187
           P ALILL+VVAPSL AS  R S IGVVICL I CYLLQEHIRASGGFRN+FTK  GVSN+
Sbjct: 120 PGALILLVVVAPSLIASTFRGSQIGVVICLVIGCYLLQEHIRASGGFRNAFTKGSGVSNT 179

Query: 188 VGIIILV 194
           +GII+L 
Sbjct: 180 IGIILLF 186

This family consists of several WCOR413-like plant cold acclimation proteins. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
PF05562	187	WCOR413: Cold acclimation protein WCOR413; InterPr	100.0

>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins

Probab=100.00  E-value=6.6e-89  Score=574.52  Aligned_cols=183  Identities=70%  Similarity=1.181  Sum_probs=179.2

Q ss_pred             ceeecC---ccchHhHHhhHHHHHHHHHHhhcchhhhHhhhcCCCchhhHHHHHHHHHHHHHHHhCCCcccchhhhhhhh
Q 028653            8 LATRAG---GVTSDLISSDMKELVVAAKKLADHSVDAIKLRGLGFGTTFLEWVASFAAIYLLILDRTNWRTNILTGLLIP   84 (206)
Q Consensus         8 l~m~~~---~~~~~~i~sd~~~l~~aa~kL~~h~~~a~~l~g~g~~t~~lqWiasiaAi~LLildrTnwkTni~tslLVP   84 (206)
                      |+||||   +.++++|+||+||++.|||||++|   |++++|+|+||+++||++++||+|||++|||||||||+||||||
T Consensus         1 l~mkt~~~~~~~~~~l~sd~~~l~~aa~kl~~~---a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVP   77 (187)
T PF05562_consen    1 LAMKTDSSSEFAAALLSSDLQELGMAAKKLASH---AICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVP   77 (187)
T ss_pred             CCccccccchhhhhhhccCHHHHHHHHHhhhcc---eeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHH
Confidence            689994   677899999999999999999999   99999999999999999999999999999999999999999999


Q ss_pred             hhhccCccchhhhhcCCcchHHHHHHHHHHhhcCCCCCCccchhhHHHHHHhhchhhHHHhhhcchHHHHHHHHHHHHHH
Q 028653           85 YIFFSLPSLIFNVFRGDVGKWIAFIAIILRLFFPRHFPDWLEMPAALILLIVVAPSLFASYIRSSWIGVVICLAIACYLL  164 (206)
Q Consensus        85 yi~lslPs~vf~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLvvvAP~~~~~~~R~s~~G~vI~L~Ia~YLl  164 (206)
                      |+|+|+|+++|||+|||||+||||+|+++|||||||||||||||++++||+||||+|+|+++||+|+|++||++|||||+
T Consensus        78 yi~lslPs~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl  157 (187)
T PF05562_consen   78 YIFLSLPSVIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLL  157 (187)
T ss_pred             HHHHhCcHHHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcccccccccchhhHHHHHH
Q 028653          165 QEHIRASGGFRNSFTKAHGVSNSVGIIIL  193 (206)
Q Consensus       165 ~qHi~~~GG~r~aF~q~~gi~~Ti~Ii~l  193 (206)
                      |||||++||+||||+|+|||+||+||+++
T Consensus       158 ~qHi~~~Gg~r~aF~~~~gis~t~~I~ll  186 (187)
T PF05562_consen  158 QQHIRASGGFRNAFTQGSGISNTIGIILL  186 (187)
T ss_pred             HHHHHhcCChhhhhhcccccceeeEEEEe
Confidence            99999999999999999999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00