Citrus Sinensis ID: 028654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEccEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHHHccccccccccccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEEEccccEcHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MASRRRMLLKVIILgdsgvgktSLMNQYVnrkfsnqykatigadfltkevqfEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLiqaspsdpenfpfvvlgnktdvdggnsrvvSEKKAKAWCaskgnipyfetsakegfnvEAAFECIAKNalknepqeedylpdtidvgggqqqrssgcec
Flexible Loop (DISEMBL)
MASRRRMLLKviilgdsgvgktSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC
Low Complexity Region (SEG)
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC
Disordered region (IsUnstruct)
******MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS****ENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA******************************
Disordered Region (DISOPRED)
***RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK****************************GCEC
Disordered Region (DISEMBL)
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDV*************
Disordered Region (DISPRO)
***RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
O24461	207	Ras-related protein Rab7	N/A	no	1.0	0.995	0.946	1e-113
Q9C820	206	Ras-related protein RABG3	yes	no	1.0	1.0	0.932	1e-112
Q9XER8	207	Ras-related protein Rab7	N/A	no	1.0	0.995	0.937	1e-112
Q9LW76	206	Ras-related protein RABG3	no	no	1.0	1.0	0.907	1e-109
Q40787	206	Ras-related protein Rab7	N/A	no	0.990	0.990	0.912	1e-107
Q9LS94	206	Ras-related protein RABG3	no	no	1.0	1.0	0.888	1e-105
P31022	206	Ras-related protein Rab7	N/A	no	1.0	1.0	0.873	1e-104
P93267	207	Ras-related protein Rab7A	N/A	no	1.0	0.995	0.845	1e-102
Q9XI98	206	Ras-related protein RABG3	no	no	1.0	1.0	0.859	1e-102
Q41640	206	Ras-related protein Rab7	N/A	no	1.0	1.0	0.742	5e-89

>sp|O24461|RAB7_PRUAR Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/207 (94%), Positives = 202/207 (97%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLNNWREEFLIQA+PSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+ AF+CIAKNAL NE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180

Query: 181 PQEEDYLPDTIDV-GGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGG+QQRSSGCEC
Sbjct: 181 PEEEIYLPDTIDVAGGGRQQRSSGCEC 207

Protein transport. Probably involved in vesicular traffic.
Prunus armeniaca (taxid: 36596)

>sp|Q9C820|RAG3D_ARATH Ras-related protein RABG3d OS=Arabidopsis thaliana GN=RABG3D PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/206 (93%), Positives = 200/206 (97%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+SRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNKTDVDGG SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECI KNA KNE
Sbjct: 121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGQQQRS+GCEC
Sbjct: 181 PEEEPYLPDTIDVAGGQQQRSTGCEC 206

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1

 Score =  403 bits (1035), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/207 (93%), Positives = 202/207 (97%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF+DRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECIA+NALKNE
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNE 180

Query: 181 PQEEDYLPDTIDVG-GGQQQRSSGCEC 206
           P+EE YLP+TIDV  GG+ QRS+GCEC
Sbjct: 181 PEEEIYLPETIDVASGGRPQRSTGCEC 207

Protein transport. Probably involved in vesicular traffic.

Gossypium hirsutum (taxid: 3635)

>sp|Q9LW76|RAG3C_ARATH Ras-related protein RABG3c OS=Arabidopsis thaliana GN=RABG3C PE=2 SV=1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/206 (90%), Positives = 199/206 (96%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV DVNVMKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNKTDVDGG SRVV+EKKAK+WCASKGNIPYFETSAK+G NV+AAFECIAKNALKNE
Sbjct: 121 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
           P+EE YLPDTIDV G +QQRS+GCEC
Sbjct: 181 PEEEVYLPDTIDVAGARQQRSTGCEC 206

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/205 (91%), Positives = 195/205 (95%), Gaps = 1/205 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSFDNLNNWREEFLIQASPSDP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V+LGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG NVE AF+CI KNALKNE
Sbjct: 121 VLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAFQCIVKNALKNE 180

Query: 181 PQEEDYLPDTID-VGGGQQQRSSGC 204
           P+EE Y+PDT+D VGG + QRSSGC
Sbjct: 181 PEEELYVPDTVDVVGGNRAQRSSGC 205

Protein transport. Probably involved in vesicular traffic.

Cenchrus ciliaris (taxid: 35872)

>sp|Q9LS94|RAG3F_ARATH Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2 SV=1

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/206 (88%), Positives = 192/206 (93%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V++GNK DVD GNSRVVSEKKAKAWCASKGNIPYFETSAK G NVE AF+CIAK+ALK+ 
Sbjct: 121 VLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSG 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
            +EE YLPDTIDVG   QQRS+GCEC
Sbjct: 181 EEEELYLPDTIDVGTSNQQRSTGCEC 206

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P31022|RAB7_PEA Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/206 (87%), Positives = 192/206 (93%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSFDNLNNWREEFLIQA+PSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSVKSFDNLNNWREEFLIQANPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+GNK D+DGGNSRVVSEKKA+AWCA+KGNIPYFETSAKEG NVE AF+ IAK+ALK+ 
Sbjct: 121 VVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSG 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
            +EE YLPDTIDVG   Q RS+GCEC
Sbjct: 181 EEEELYLPDTIDVGNSSQPRSTGCEC 206

Protein transport. Probably involved in vesicular traffic.

Pisum sativum (taxid: 3888)

>sp|P93267|RAB7_MESCR Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  370 bits (951), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/207 (84%), Positives = 192/207 (92%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR LLK+IILGDSGVGKTSLMNQ+VN+KFSNQYKATIGADFLTKE+QFEDRLFTLQ
Sbjct: 1   MASRRRKLLKIIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKELQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSF++LN WREEFLIQASP+DP+NFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLTYDVNVMKSFESLNRWREEFLIQASPADPDNFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V+LGNK DVDGG+ RVVSEKKAKAWC SKGNIPYFETSAK+G NVE AF+CIAKNA++NE
Sbjct: 121 VLLGNKIDVDGGSGRVVSEKKAKAWCMSKGNIPYFETSAKDGTNVEEAFQCIAKNAIQNE 180

Query: 181 PQEEDYLPDTIDVGGGQQ-QRSSGCEC 206
           P+EE YLPDTID+ G  + Q SS CEC
Sbjct: 181 PEEETYLPDTIDMAGSTRPQSSSACEC 207

Protein transport. Probably involved in vesicular traffic.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2 SV=1

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 188/206 (91%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVN  KSF++LNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+GNK DVDGG+SRVVSEKKA+AWCASKGNIPY+ETSAK G NVE AF CI  NA+K+ 
Sbjct: 121 VVIGNKIDVDGGSSRVVSEKKARAWCASKGNIPYYETSAKVGTNVEDAFLCITTNAMKSG 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
            +EE YLPDTIDVG    QRS+GCEC
Sbjct: 181 EEEEMYLPDTIDVGTSNPQRSTGCEC 206

Intracellular vesicle trafficking and protein transport. May play a role in adaptation to stress by recylcing macromolecules in specific cellular compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41640|RAB7_VIGAC Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1

 Score =  327 bits (837), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 175/206 (84%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+ RRR LLKVI+LGD+GVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct: 1   MSLRRRTLLKVIVLGDTGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVL YDVNVMKSFD L+NW EEFL QA+P DP +FPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLAYDVNVMKSFDTLDNWHEEFLKQANPPDPRSFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           ++LGNK D+DGGNSRVVSEKKAK WCASKGNIPYFETSAKE FNV+AAF CIAK AL NE
Sbjct: 121 ILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDFNVDAAFLCIAKAALANE 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
            +++ Y     +    + ++ SGC C
Sbjct: 181 HEQDIYFQGIPEAAVPENEQRSGCAC 206

Protein transport. Probably involved in vesicular traffic.

Vigna aconitifolia (taxid: 3918)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
225442589	207	PREDICTED: ras-related protein Rab7 [Vit	1.0	0.995	0.966	1e-113
351721665	207	uncharacterized protein LOC100305824 [Gl	1.0	0.995	0.956	1e-113
357468399	207	Ras-related protein Rab7 [Medicago trunc	1.0	0.995	0.956	1e-112
255549976	207	protein with unknown function [Ricinus c	1.0	0.995	0.956	1e-112
388520895	207	unknown [Lotus japonicus]	1.0	0.995	0.951	1e-112
148466386	207	Rab7 [Prosopis juliflora]	1.0	0.995	0.956	1e-112
449448032	206	PREDICTED: ras-related protein RABG3d-li	1.0	1.0	0.941	1e-111
3914550	207	RecName: Full=Ras-related protein Rab7 g	1.0	0.995	0.946	1e-111
15218194	206	RAB GTPase homolog G3D [Arabidopsis thal	1.0	1.0	0.932	1e-111
449491738	206	PREDICTED: ras-related protein RABG3d-li	1.0	1.0	0.936	1e-111

>gi|225442589|ref|XP_002284408.1| PREDICTED: ras-related protein Rab7 [Vitis vinifera] gi|297743251|emb|CBI36118.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/207 (96%), Positives = 203/207 (98%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDVG-GGQQQRSSGCEC 206
           P+EE YLPDTIDV  GG+QQRSSGCEC
Sbjct: 181 PEEEIYLPDTIDVASGGRQQRSSGCEC 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721665|ref|NP_001237217.1| uncharacterized protein LOC100305824 [Glycine max] gi|356521867|ref|XP_003529572.1| PREDICTED: ras-related protein Rab7-like [Glycine max] gi|1370188|emb|CAA98171.1| RAB7D [Lotus japonicus] gi|255626709|gb|ACU13699.1| unknown [Glycine max]

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/207 (95%), Positives = 204/207 (98%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRV+SEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDV-GGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGG+QQRS+GCEC
Sbjct: 181 PEEEMYLPDTIDVGGGGRQQRSTGCEC 207

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468399|ref|XP_003604484.1| Ras-related protein Rab7 [Medicago truncatula] gi|217075638|gb|ACJ86179.1| unknown [Medicago truncatula] gi|355505539|gb|AES86681.1| Ras-related protein Rab7 [Medicago truncatula] gi|388494386|gb|AFK35259.1| unknown [Medicago truncatula]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/207 (95%), Positives = 204/207 (98%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDVG-GGQQQRSSGCEC 206
           P+EE YLPDTIDVG GG+QQRS+GCEC
Sbjct: 181 PEEEMYLPDTIDVGNGGRQQRSTGCEC 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549976|ref|XP_002516039.1| protein with unknown function [Ricinus communis] gi|223544944|gb|EEF46459.1| protein with unknown function [Ricinus communis]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/207 (95%), Positives = 204/207 (98%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED+LFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDKLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDV-GGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGG+QQRS+GCEC
Sbjct: 181 PEEEIYLPDTIDVGGGGRQQRSTGCEC 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520895|gb|AFK48509.1| unknown [Lotus japonicus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/207 (95%), Positives = 203/207 (98%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVII GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIIFGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRV+SEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDV-GGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGG+QQRS+GCEC
Sbjct: 181 PEEEMYLPDTIDVGGGGRQQRSTGCEC 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148466386|gb|ABQ65168.1| Rab7 [Prosopis juliflora]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/207 (95%), Positives = 203/207 (98%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN+WREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF+CIAKNALKNE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDVG-GGQQQRSSGCEC 206
           P+EE YLPDTIDVG GG+QQR +GCEC
Sbjct: 181 PEEEVYLPDTIDVGVGGRQQRFTGCEC 207

Source: Prosopis juliflora

Species: Prosopis juliflora

Genus: Prosopis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448032|ref|XP_004141770.1| PREDICTED: ras-related protein RABG3d-like isoform 1 [Cucumis sativus]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/206 (94%), Positives = 201/206 (97%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR+LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ +DRLFTLQ
Sbjct: 1   MASRRRILLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQLDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG NV+AAF+CIAKNALKNE
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGLNVDAAFQCIAKNALKNE 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
           P+EE YLPDTIDV GG+QQRS+GCEC
Sbjct: 181 PEEEVYLPDTIDVAGGRQQRSTGCEC 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3914550|sp|O24461.1|RAB7_PRUAR RecName: Full=Ras-related protein Rab7 gi|2317874|gb|AAB71504.1| Rab7 GTP binding protein [Prunus armeniaca]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/207 (94%), Positives = 202/207 (97%), Gaps = 1/207 (0%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSF+NLNNWREEFLIQA+PSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+ AF+CIAKNAL NE
Sbjct: 121 VVLGNKIDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNE 180

Query: 181 PQEEDYLPDTIDV-GGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGG+QQRSSGCEC
Sbjct: 181 PEEEIYLPDTIDVAGGGRQQRSSGCEC 207

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218194|ref|NP_175638.1| RAB GTPase homolog G3D [Arabidopsis thaliana] gi|297852978|ref|XP_002894370.1| hypothetical protein ARALYDRAFT_474344 [Arabidopsis lyrata subsp. lyrata] gi|75169431|sp|Q9C820.1|RAG3D_ARATH RecName: Full=Ras-related protein RABG3d; Short=AtRABG3d; AltName: Full=Ras-related protein Rab72; Short=AtRab72 gi|12323132|gb|AAG51552.1|AC037424_17 GTP-binding protein RAB7D, putative; 63624-64923 [Arabidopsis thaliana] gi|15718410|dbj|BAB68372.1| AtRab72 [Arabidopsis thaliana] gi|18389228|gb|AAL67057.1| putative GTP-binding protein RAB7D [Arabidopsis thaliana] gi|20465885|gb|AAM20047.1| putative GTP-binding protein RAB7D [Arabidopsis thaliana] gi|297340212|gb|EFH70629.1| hypothetical protein ARALYDRAFT_474344 [Arabidopsis lyrata subsp. lyrata] gi|332194656|gb|AEE32777.1| RAB GTPase homolog G3D [Arabidopsis thaliana]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/206 (93%), Positives = 200/206 (97%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+SRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct: 1   MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNKTDVDGG SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECI KNA KNE
Sbjct: 121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
           P+EE YLPDTIDV GGQQQRS+GCEC
Sbjct: 181 PEEEPYLPDTIDVAGGQQQRSTGCEC 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491738|ref|XP_004158989.1| PREDICTED: ras-related protein RABG3d-like isoform 1 [Cucumis sativus]

 Score =  404 bits (1039), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/206 (93%), Positives = 200/206 (97%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MASRRR+LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ +DRLFTLQ
Sbjct: 1   MASRRRILLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQLDDRLFTLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG NV+AAF+CIAKNALKN 
Sbjct: 121 VVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGLNVDAAFQCIAKNALKNG 180

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
           P+EE YLPDTIDV GG+QQRS+GCEC
Sbjct: 181 PEEEVYLPDTIDVAGGRQQRSTGCEC 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
TAIR|locus:2018124	206	RABG3d "RAB GTPase homolog G3D	1.0	1.0	0.932	1.1e-103
TAIR|locus:2093437	206	RABG3c "RAB GTPase homolog G3C	1.0	1.0	0.907	1.7e-100
TAIR|locus:2094029	206	RAB7B "RAB GTPase homolog G3F"	1.0	1.0	0.888	1.1e-96
TAIR|locus:2010257	206	RABG3E "RAB GTPase homolog G3E	1.0	1.0	0.859	2.1e-93
TAIR|locus:2199716	203	RABG3B "RAB GTPase homolog G3B	0.980	0.995	0.729	1.3e-77
ZFIN|ZDB-GENE-040704-16	204	zgc:91909 "zgc:91909" [Danio r	0.985	0.995	0.714	2.7e-75
DICTYBASE|DDB_G0269236	203	rab7A "Rab GTPase" [Dictyostel	0.980	0.995	0.710	3.5e-75
ZFIN|ZDB-GENE-040927-2	205	zgc:100918 "zgc:100918" [Danio	0.985	0.990	0.706	1.2e-74
TAIR|locus:2118500	217	RABG3A "RAB GTPase homolog G3A	1.0	0.949	0.677	2.5e-74
UNIPROTKB|F1MJQ1	207	RAB7A "Ras-related protein Rab	0.985	0.980	0.690	2.2e-73

TAIR|locus:2018124 RABG3d "RAB GTPase homolog G3D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 192/206 (93%), Positives = 200/206 (97%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M+SRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MSSRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNKTDVDGG SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV+AAFECI KNA KNE
Sbjct:   121 VVLGNKTDVDGGKSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVDAAFECITKNAFKNE 180

Query:   181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
             P+EE YLPDTIDV GGQQQRS+GCEC
Sbjct:   181 PEEEPYLPDTIDVAGGQQQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093437 RABG3c "RAB GTPase homolog G3C" [Arabidopsis thaliana (taxid:3702)]

 Score = 997 (356.0 bits), Expect = 1.7e-100, P = 1.7e-100
 Identities = 187/206 (90%), Positives = 199/206 (96%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MASRRR+LLKVIILGDSGVGKTSLMNQ+VNRKFSNQYKATIGADFLTKEVQ +DR+FTLQ
Sbjct:     1 MASRRRVLLKVIILGDSGVGKTSLMNQFVNRKFSNQYKATIGADFLTKEVQIDDRIFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV DVNVMKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVNDVNVMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNKTDVDGG SRVV+EKKAK+WCASKGNIPYFETSAK+G NV+AAFECIAKNALKNE
Sbjct:   121 VVLGNKTDVDGGKSRVVTEKKAKSWCASKGNIPYFETSAKDGVNVDAAFECIAKNALKNE 180

Query:   181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
             P+EE YLPDTIDV G +QQRS+GCEC
Sbjct:   181 PEEEVYLPDTIDVAGARQQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2094029 RAB7B "RAB GTPase homolog G3F" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 183/206 (88%), Positives = 192/206 (93%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN MKSF+NLNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFENLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             V++GNK DVD GNSRVVSEKKAKAWCASKGNIPYFETSAK G NVE AF+CIAK+ALK+ 
Sbjct:   121 VLIGNKVDVDDGNSRVVSEKKAKAWCASKGNIPYFETSAKVGTNVEEAFQCIAKDALKSG 180

Query:   181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
              +EE YLPDTIDVG   QQRS+GCEC
Sbjct:   181 EEEELYLPDTIDVGTSNQQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2010257 RABG3E "RAB GTPase homolog G3E" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 177/206 (85%), Positives = 188/206 (91%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SRRR LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEVQFEDRLFTLQ
Sbjct:     1 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN  KSF++LNNWREEFLIQASPSDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNSAKSFEDLNNWREEFLIQASPSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VV+GNK DVDGG+SRVVSEKKA+AWCASKGNIPY+ETSAK G NVE AF CI  NA+K+ 
Sbjct:   121 VVIGNKIDVDGGSSRVVSEKKARAWCASKGNIPYYETSAKVGTNVEDAFLCITTNAMKSG 180

Query:   181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
              +EE YLPDTIDVG    QRS+GCEC
Sbjct:   181 EEEEMYLPDTIDVGTSNPQRSTGCEC 206

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2199716 RABG3B "RAB GTPase homolog G3B" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 151/207 (72%), Positives = 171/207 (82%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M++RRR LLKVIILGDSGVGKTSLMNQYVN KFS QYKATIGADF+TKE+Q +DRL TLQ
Sbjct:     1 MSTRRRTLLKVIILGDSGVGKTSLMNQYVNNKFSQQYKATIGADFVTKELQIDDRLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDVN +KSF++L+NW  EFL +ASP DP  FPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNHLKSFESLDNWHNEFLTRASPRDPMAFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             ++LGNK D+DGGNSRVVSEKKA+ WCA KGNI YFETSAKE +NV+ +F CI K AL NE
Sbjct:   121 ILLGNKVDIDGGNSRVVSEKKAREWCAEKGNIVYFETSAKEDYNVDDSFLCITKLALANE 180

Query:   181 PQEEDYL-PDTIDVGGGQQQRSSGCEC 206
               ++ Y  PDT   G   +QR  GC C
Sbjct:   181 RDQDIYFQPDT---GSVPEQRG-GCAC 203

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0010089 "xylem development" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0010623 "developmental programmed cell death" evidence=IMP

GO:0048102 "autophagic cell death" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040704-16 zgc:91909 "zgc:91909" [Danio rerio (taxid:7955)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 148/207 (71%), Positives = 167/207 (80%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MASR+++LLKVIILGDSGVGKTSLMNQYVN KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV    +F  L++WR+EFLIQAS SDPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPTTFKTLDSWRDEFLIQASTSDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D+D   +R VS K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct:   121 VVLGNKIDLD---NRQVSTKRAQAWCQSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query:   181 PQEEDYLPDTIDVGGGQ-QQRSSGCEC 206
               ++   PD I +G  +      GC C
Sbjct:   178 SVDKYDFPDEIKLGNDRPMSNGEGCSC 204

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0269236 rab7A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 145/204 (71%), Positives = 170/204 (83%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MA+++++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKE+  +DR+ T+Q
Sbjct:     1 MATKKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVL YDVNV K+F+NL++WR+EFLIQA P DP+NFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D++  N RVVS+K+A +WC SKGNIPYFETSAKE  NVE AF+ IA+NA+K E
Sbjct:   121 VVLGNKIDLE--NQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLE 178

Query:   181 PQEEDYLPDTIDVGGGQQQRSSGC 204
                   +P  I V    Q   SGC
Sbjct:   179 DGLVFPIPTNIQVIPEPQPAKSGC 202

GO:0005615 "extracellular space" evidence=IDA

GO:0032010 "phagolysosome" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006909 "phagocytosis" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040927-2 zgc:100918 "zgc:100918" [Danio rerio (taxid:7955)]

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 147/208 (70%), Positives = 169/208 (81%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MASR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLVYDV    +F  L++WR+EFLIQASP DPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NV+ AF+ IA+NALK E
Sbjct:   121 VVLGNKIDLE---NRQVTTKRAQAWCQSKSNIPYFETSAKEAINVDQAFQTIARNALKQE 177

Query:   181 PQEEDY-LPDTIDVGGGQQQRSS-GCEC 206
              + E Y  PD I +   +   S  GC C
Sbjct:   178 SEVETYDFPDQIKLRDDRPVSSGDGCSC 205

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2118500 RABG3A "RAB GTPase homolog G3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 147/217 (67%), Positives = 168/217 (77%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             MA+RRR LLKVI+LGDSGVGKTSLMNQYV++KFS QYKATIGADF+TKE+Q  ++L TLQ
Sbjct:     1 MATRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIGEKLVTLQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA---------- 110
             IWDTAGQERFQSLG AFYRGADCC LVYDVNV++SFDNL  W EEFL QA          
Sbjct:    61 IWDTAGQERFQSLGAAFYRGADCCALVYDVNVLRSFDNLETWHEEFLKQAWNIGMWTIAE 120

Query:   111 -SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
              SPSDP+ FPF+VLGNK DVDGG+SRVVS+KKA  WCAS GNIPYFETSAK+ FNV+ AF
Sbjct:   121 ASPSDPKTFPFIVLGNKIDVDGGSSRVVSDKKAADWCASNGNIPYFETSAKDDFNVDEAF 180

Query:   170 ECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC 206
               IAK AL NE +++ Y     D     + +  GC C
Sbjct:   181 LTIAKTALANEHEQDIYFQGIPDAVTENEPKGGGCAC 217

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=RCA

UNIPROTKB|F1MJQ1 RAB7A "Ras-related protein Rab-7a" [Bos taurus (taxid:9913)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 145/210 (69%), Positives = 169/210 (80%)

Query:     1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
             M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct:     1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query:    61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
             IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct:    61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query:   121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct:   121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query:   181 PQEEDY--LPDTIDVGGGQQQRSS--GCEC 206
              + E Y   P+ I +    + + S  GC C
Sbjct:   178 TEVELYNEFPEPIKLDKNDRTKPSAEGCSC 207

GO:0045022 "early endosome to late endosome transport" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0007174 "epidermal growth factor catabolic process" evidence=IEA

GO:0006622 "protein targeting to lysosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51149	RAB7A_HUMAN	No assigned EC number	0.6857	0.9854	0.9806	yes	no
O04157	RAG3B_ARATH	No assigned EC number	0.7198	0.9805	0.9950	no	no
P93267	RAB7_MESCR	No assigned EC number	0.8454	1.0	0.9951	N/A	no
Q9C2L8	RAB7_NEUCR	No assigned EC number	0.75	0.8883	0.8926	N/A	no
Q9LW76	RAG3C_ARATH	No assigned EC number	0.9077	1.0	1.0	no	no
O97572	RAB7A_RABIT	No assigned EC number	0.6730	0.9854	0.9806	yes	no
Q43463	RAB7_SOYBN	No assigned EC number	0.7427	1.0	1.0	no	no
Q40787	RAB7_CENCI	No assigned EC number	0.9121	0.9902	0.9902	N/A	no
Q6DUB4	RAB7B_PAROT	No assigned EC number	0.6038	0.9805	0.9805	N/A	no
Q948K8	RAG3A_ARATH	No assigned EC number	0.7135	1.0	1.0	no	no
P09527	RAB7A_RAT	No assigned EC number	0.6857	0.9854	0.9806	yes	no
P32939	YPT7_YEAST	No assigned EC number	0.5857	0.9805	0.9711	yes	no
Q9XI98	RAG3E_ARATH	No assigned EC number	0.8592	1.0	1.0	no	no
P36411	RAB7A_DICDI	No assigned EC number	0.7107	0.9805	0.9950	yes	no
P51150	RAB7A_MOUSE	No assigned EC number	0.6857	0.9854	0.9806	yes	no
Q9C820	RAG3D_ARATH	No assigned EC number	0.9320	1.0	1.0	yes	no
O94655	YPT7_SCHPO	No assigned EC number	0.6407	0.9951	1.0	yes	no
Q95UJ0	RAB7A_PAROT	No assigned EC number	0.6086	0.9805	0.9805	N/A	no
Q3T0F5	RAB7A_BOVIN	No assigned EC number	0.6857	0.9854	0.9806	yes	no
Q41640	RAB7_VIGAC	No assigned EC number	0.7427	1.0	1.0	N/A	no
P36864	YPTV5_VOLCA	No assigned EC number	0.6990	0.9951	1.0	N/A	no
P31022	RAB7_PEA	No assigned EC number	0.8737	1.0	1.0	N/A	no
Q5R9Y4	RAB7A_PONAB	No assigned EC number	0.6857	0.9854	0.9806	yes	no
O24461	RAB7_PRUAR	No assigned EC number	0.9468	1.0	0.9951	N/A	no
P18067	RAB7A_CANFA	No assigned EC number	0.6857	0.9854	0.9806	yes	no
Q9LS94	RAG3F_ARATH	No assigned EC number	0.8883	1.0	1.0	no	no
Q39573	YPTC5_CHLRE	No assigned EC number	0.7170	0.9902	0.9902	N/A	no
Q9XER8	RAB7_GOSHI	No assigned EC number	0.9371	1.0	0.9951	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034372001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (207 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	206
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-130
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-87
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-77
pfam00071	162	pfam00071, Ras, Ras family	2e-73
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-69
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-52
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-51
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-51
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-50
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-49
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	9e-48
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-47
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-47
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-44
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-42
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-41
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-40
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-40
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-38
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-38
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-38
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-38
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-37
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-37
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-37
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-36
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-35
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-35
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	6e-35
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-34
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	6e-34
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-33
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-33
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	6e-33
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-31
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-31
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-30
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-30
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	6e-30
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-29
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-29
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-29
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-28
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	7e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-27
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-27
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-27
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-26
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-26
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	8e-26
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-25
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-25
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-25
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	5e-25
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-24
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-24
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-23
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	5e-23
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-22
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-22
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-22
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-19
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-19
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-18
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	6e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	9e-18
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-17
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-17
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	2e-16
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-16
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-15
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-15
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-14
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-13
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-13
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-13
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	8e-13
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	4e-12
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	5e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-11
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-11
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-11
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-11
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-10
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-09
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-07
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	1e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-06
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-06
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	9e-06
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	2e-05
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-05
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	6e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	7e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	2e-04
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-04
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	2e-04
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	5e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	6e-04
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.001
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.001
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.001
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.002
COG1159	298	COG1159, Era, GTPase [General function prediction	0.002
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	0.002

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  362 bits (931), Expect = e-130
 Identities = 137/174 (78%), Positives = 151/174 (86%), Gaps = 2/174 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL TLQIWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RFQSLGVAFYRGADCCVLVYDV   KSF++L++WR+EFLIQASP DPENFPFVVLGNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           ++    R VS KKA+ WC SKGNIPYFETSAKE  NV+ AFE IA+ AL+ E +
Sbjct: 121 LE--EKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  253 bits (650), Expect = 3e-87
 Identities = 82/171 (47%), Positives = 120/171 (70%), Gaps = 7/171 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+I++GDSGVGK+SL++++ + KFS QYK+TIG DF TK ++ + +   LQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YRGA   +LVYD+   +SF+NL NW +E    ASP    N   +++GNK+D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASP----NVVIMLVGNKSD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           ++    R VS ++A+A+ A +  +P+FETSAK   NVE AFE +A+  LK 
Sbjct: 117 LE--EQRQVSREEAEAF-AEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  229 bits (586), Expect = 1e-77
 Identities = 77/166 (46%), Positives = 116/166 (69%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGKTSL+ ++V+ KFS  YK+TIG DF +K ++ + +   LQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YRGA   +LVYDV   +SF+NL+ W  E    A    P N P +++GNK+D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYA----PPNIPIILVGNKSD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           ++  + R VS ++A+ + A +  + +FETSAK G NV+ AFE +A+
Sbjct: 117 LE--DERQVSTEEAQQF-AKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  218 bits (559), Expect = 2e-73
 Identities = 77/169 (45%), Positives = 108/169 (63%), Gaps = 7/169 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK+SL+ ++   KF  +Y  TIG DF TK ++ + +   LQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F++L   +YRGA   +LVYD+    SF+N+  W EE L  A     EN P V++GNK D+
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHA----DENVPIVLVGNKCDL 116

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
              + RVVS ++ +A     G +P+ ETSAK   NVE AFE +A+  LK
Sbjct: 117 --EDQRVVSTEEGEALAKELG-LPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  209 bits (533), Expect = 2e-69
 Identities = 93/166 (56%), Positives = 121/166 (72%), Gaps = 3/166 (1%)

Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +  LLKVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    TLQIWDT
Sbjct: 2   KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDT 61

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LG
Sbjct: 62  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 121

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           NK D+     R VS ++A+AWC   G+ PYFETSAK+  NV AAFE
Sbjct: 122 NKIDIP---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 164

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  165 bits (420), Expect = 2e-52
 Identities = 68/166 (40%), Positives = 105/166 (63%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LGD  VGKTS++ +++   F NQY+ATIG DFL+K +  +D+   LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+   +SFDN + W ++   +   +D      V++GNKTD+
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERG-NDVI---IVLVGNKTDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
              + R VS ++ +   A + N  + ETSAK G NV+  F+ IA+ 
Sbjct: 118 S--DKRQVSTEEGEKK-AKENNAMFIETSAKAGHNVKQLFKKIAQA 160

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  163 bits (414), Expect = 4e-51
 Identities = 71/202 (35%), Positives = 109/202 (53%), Gaps = 5/202 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQ 67
            KV+++GD GVGKTS++ +YV+  FS  YKATIG DF  K ++++   +  LQ+WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF  +   +Y+GA   ++V+DV    +F+ +  W+ +   + +  + E  P ++L NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE---PQEE 184
           D+         E +   +C   G I +FETSAKE  N+E A   + KN LKN+      E
Sbjct: 121 DLKKERLAKDPE-QMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPE 179

Query: 185 DYLPDTIDVGGGQQQRSSGCEC 206
               + ID+        S   C
Sbjct: 180 PDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  162 bits (411), Expect = 5e-51
 Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG+  VGKTSL+ +YV  KF+ ++++T  A F  K V    +   L IWDTAGQER
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + +LG  +YR AD  +LVYD+    SF  +  W +E  ++    +  N   V++GNK D+
Sbjct: 62  YHALGPIYYRDADGAILVYDITDADSFQKVKKWIKE--LKQMRGN--NISLVIVGNKIDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +    RVVS+ +A+ +  S G   +FETSAK G  +E  F  +AK
Sbjct: 118 E--RQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSLAK 159

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  160 bits (407), Expect = 2e-50
 Identities = 70/173 (40%), Positives = 109/173 (63%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L K++++GDSGVGK+ L+ ++    F+  + +TIG DF  + ++ + +   LQIWDTAG
Sbjct: 2   YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  ++YRGA   +LVYD+   KSF+N+ NW       AS    E+   +++GNK
Sbjct: 62  QERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHAS----EDVERMLVGNK 117

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D++    RVVS+++ +A  A +  I + ETSAK   NVE AF  +AK+ LK 
Sbjct: 118 CDME--EKRVVSKEEGEA-LAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  157 bits (400), Expect = 3e-49
 Identities = 64/168 (38%), Positives = 107/168 (63%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 3   LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +F+N+  W +E    A      N   +++GNK+
Sbjct: 63  ERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADS----NIVIMLVGNKS 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           D+   + R V  ++AKA+ A K  + + ETSA +G NVE AF+ +   
Sbjct: 119 DL--RHLRAVPTEEAKAF-AEKNGLSFIETSALDGTNVEEAFKQLLTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  153 bits (390), Expect = 9e-48
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGDS VGK+S++ ++V  +FS   ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           ++SL   +YRGA   ++VYD+   +SF+   +W +E      P    N    + GNK D+
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPP----NIVIALAGNKADL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  + R VS ++A+ +    G + + ETSAK G NV   F  IA+
Sbjct: 119 E--SKRQVSTEEAQEYADENGLL-FMETSAKTGENVNELFTEIAR 160

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  153 bits (389), Expect = 1e-47
 Identities = 68/173 (39%), Positives = 108/173 (62%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNK 116

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D+   + +VV   +AK + A +  IP+ ETSAK   NVE AF  +A+   K 
Sbjct: 117 CDLT--DKKVVDYTEAKEF-ADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  153 bits (388), Expect = 1e-47
 Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 7/165 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GDSGVGK+SL+ ++ +  F     +TIG DF  K V  + +   L IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L  ++YRGA   +LVYDV    +FDNL+ W  E     + S   +   +++GNK D
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL---DTYSTNPDAVKMLVGNKID 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
            +   +R V+ ++ + + A K N+ + ETSAK    V+ AFE + 
Sbjct: 118 KE---NREVTREEGQKF-ARKHNMLFIETSAKTRIGVQQAFEELV 158

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  144 bits (364), Expect = 7e-44
 Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 16/175 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 4   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRV 63

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 64  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPD- 122

Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
              V++GNK D+   + R VSE++A+      G IPYFETSA  G NVE A E +
Sbjct: 123 --IVLIGNKADLP--DQREVSERQARELADKYG-IPYFETSAATGQNVEKAVETL 172

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  138 bits (351), Expect = 5e-42
 Identities = 58/167 (34%), Positives = 95/167 (56%), Gaps = 7/167 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  ++V+ +F  +Y  TI  D   K++  +   +TL I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  D  +LVY +   +SF+ + N RE+ L      D E+ P V++GNK D+
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV---KDKEDVPIVLVGNKCDL 116

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           +  N R VS ++ +A  A +   P+ ETSAK   N++  F  + +  
Sbjct: 117 E--NERQVSTEEGEAL-AEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  138 bits (349), Expect = 1e-41
 Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + +  + +   LQIWDTAGQ
Sbjct: 4   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    ++     N   +++GNK 
Sbjct: 64  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS----NMTIMLIGNKC 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++  + R VS ++ +A+ A +  + + ETSAK   NVE AF   AK     
Sbjct: 120 DLE--SRREVSYEEGEAF-AREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  136 bits (343), Expect = 3e-40
 Identities = 64/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LGD GVGKT+L+N+ V  +F   Y  TIG     K ++   R   LQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            ++SL   +YRGA+  ++VYD  + +S D L   W EE    A    P++ P +++GNK 
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKI 121

Query: 128 DVDG------------GNSRVVSEKKAKAWCASKGNIPYFETSAK--EGFNVEAAFECIA 173
           D+                  V+     KA      N    ETSAK   G NV   F+ + 
Sbjct: 122 DLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181

Query: 174 KNALKNEPQEEDY 186
           +  L+   +    
Sbjct: 182 RKLLEEIEKLVLK 194

Length = 219

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  133 bits (336), Expect = 9e-40
 Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 7/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K +I+G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YRGA   +LVYD+   +SF+ L NW  +    ASP    +   +++GNK D
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASP----DIVIILVGNKKD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           ++  + R V+  +A  + A +  + + ETSA  G NVE AF
Sbjct: 117 LE--DDREVTFLEASRF-AQENGLLFLETSALTGENVEEAF 154

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  131 bits (330), Expect = 1e-38
 Identities = 79/198 (39%), Positives = 110/198 (55%), Gaps = 11/198 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           KV+++GDSGVGKT L+ ++ +  F +  + AT+G  F  K V  +     LQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  A+YR A   +L+YDV    SFDN+  W  E L  A      +   ++LGNK D
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ----SDVVIMLLGNKAD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLP 188
           + G   RVV  +  +   A +  +P+ ETSAK G NVE AF  +AK  LK+   E+   P
Sbjct: 118 MSG--ERVVKREDGER-LAKEYGVPFMETSAKTGLNVELAFTAVAKE-LKHRSVEQPDEP 173

Query: 189 --DTIDVGGGQQQRSSGC 204
                D    Q++ S  C
Sbjct: 174 KFKIQDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  131 bits (330), Expect = 2e-38
 Identities = 71/181 (39%), Positives = 101/181 (55%), Gaps = 12/181 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQIWDTAGQ
Sbjct: 6   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++   +YRG    ++VYDV   +SF N+  W +E  I+ +  D      V++GNK 
Sbjct: 66  ERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQE--IEQNCDDVCK---VLVGNKN 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL----KNEPQE 183
             D    +VV  + A  +      I  FETSAKE  NVE  F CI +  L     N  ++
Sbjct: 121 --DDPERKVVETEDAYKFAGQM-GISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQ 177

Query: 184 E 184
           +
Sbjct: 178 Q 178

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  128 bits (324), Expect = 7e-38
 Identities = 61/167 (36%), Positives = 97/167 (58%), Gaps = 6/167 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K+I++GDS VGKT ++ ++ +  FS +   TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 3   LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YR A+  ++ YD+    SF+++ +W EE     +     N   +++GNK 
Sbjct: 63  ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS----NVVLLLIGNKC 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++    R V  ++A       G +   ETSAKE  NVE AF  +A 
Sbjct: 119 DLE--EQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMAT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  130 bits (327), Expect = 7e-38
 Identities = 65/165 (39%), Positives = 105/165 (63%), Gaps = 7/165 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+++++++   +F  + K+TIG +F T+ +Q E +    QIWDTAGQ
Sbjct: 12  LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQ 71

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+   ++FDN+  W  E    A      N   ++ GNK+
Sbjct: 72  ERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKS 127

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D++  + R V+E+  +A  A K  + + ETSA E  NVE AF+ I
Sbjct: 128 DLN--HLRSVAEEDGQAL-AEKEGLSFLETSALEATNVEKAFQTI 169

Length = 216

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  127 bits (321), Expect = 1e-37
 Identities = 63/172 (36%), Positives = 103/172 (59%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 2   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     +P    N    ++GNK 
Sbjct: 62  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIFLIGNKA 117

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK + A +  + + E SAK G NVE AF   AK   +N
Sbjct: 118 DLEA--QRDVTYEEAKQF-ADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  126 bits (319), Expect = 3e-37
 Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 10/167 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT--LQIWDTAG 66
           +KVI++G+  VGK+S++ ++V   F+  YK TIG DFL K++          L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE F ++  A+YRGA  C+LV+     +SF+ + +W+E        ++  + P V++  K
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKE-----KVEAECGDIPMVLVQTK 115

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
            D+   +  V++ ++A+A  A +  +P F TS K+ FNV   FE +A
Sbjct: 116 IDL--LDQAVITNEEAEA-LAKRLQLPLFRTSVKDDFNVTELFEYLA 159

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  126 bits (318), Expect = 6e-37
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KVI +G+SGVGK+ ++ +Y   +F ++Y  TIG D+  K+V   ++   +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQ-ASPSDPENFPFVVLGNKT 127
            +  +   FY+     +LVYDV   +SF+ L++W +E   +     + EN   VV  NK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK- 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            +D    R VSE + + W  SKG   YFETSA  G  V   F+
Sbjct: 120 -IDLTKHRAVSEDEGRLWAESKGFK-YFETSACTGEGVNEMFQ 160

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  124 bits (314), Expect = 2e-36
 Identities = 67/174 (38%), Positives = 100/174 (57%), Gaps = 11/174 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+I++GDS VGKT L  ++   +F  + +ATIG DF  + V+ +     +Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 70  F-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           F +S+   +YR     V VYDV  M SF +L +W EE    + P++    P +++GNK D
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNE---VPRILVGNKCD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAKNALKN 179
           +       V    A+ + A   ++P FETSAK   E  +VEA F  +A + LK+
Sbjct: 121 L--REQIQVPTDLAQRF-ADAHSMPLFETSAKDPSENDHVEAIFMTLA-HKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  123 bits (310), Expect = 2e-35
 Identities = 59/166 (35%), Positives = 105/166 (63%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT-LQIWDTAGQE 68
           ++I++GDS VGK+SL+ ++   +F+     T+G DF ++ ++ E  +   LQ+WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+  ++YR +   +LV+D+   +SF+++++W EE      P  P    F+++G+K D
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRP---VFILVGHKCD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           ++  + R V+ ++A+      G + Y ETSA+ G NVE AFE + +
Sbjct: 121 LE--SQRQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFELLTQ 163

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  122 bits (307), Expect = 6e-35
 Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 21/211 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + +  +++   LQIWDTAGQ
Sbjct: 6   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A+     N   +++GNK 
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA----NMTIMLIGNKC 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN------EP 181
           D+   + R VS ++ + +    G I + E SAK   NVE AF   A    K       + 
Sbjct: 122 DL--AHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDV 178

Query: 182 QEEDY--------LPDTIDVGGGQQQRSSGC 204
             E Y        +P       G   +  GC
Sbjct: 179 SNESYGIKVGYGAIPGASGGRDGTSSQGGGC 209

Length = 210

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  120 bits (303), Expect = 6e-35
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 7/163 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F++ + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W      Q      +N   +++GNK 
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----STQIKTYSWDNAQVILVGNKC 116

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++  + RVVS ++ +      G   +FE SAKE  NV+  FE
Sbjct: 117 DME--DERVVSAERGRQLADQLG-FEFFEASAKENINVKQVFE 156

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  120 bits (302), Expect = 1e-34
 Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 7/166 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+ +     LQIWDTAGQ
Sbjct: 7   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ 66

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A+         +++GNK 
Sbjct: 67  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKI 122

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     R VS+++A+ + +   ++ Y ETSAKE  NVE  F  +A
Sbjct: 123 DL--AERREVSQQRAEEF-SDAQDMYYLETSAKESDNVEKLFLDLA 165

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  118 bits (298), Expect = 6e-34
 Identities = 57/161 (35%), Positives = 93/161 (57%), Gaps = 7/161 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q++   F + Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D ++ P V++GNK D+
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQIL---RVKDRDDVPIVLVGNKCDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +  + RVVS ++ K   A +   P+ ETSAKE  NV+ AF 
Sbjct: 118 E--SERVVSTEEGKE-LARQWGCPFLETSAKERVNVDEAFY 155

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  118 bits (298), Expect = 1e-33
 Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 6/175 (3%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    E+   +++GNK D
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 116

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
            +    R ++ ++ + +      + + E SAK+ FNV+  F  +  + LK  P +
Sbjct: 117 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLD 169

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  116 bits (292), Expect = 4e-33
 Identities = 59/161 (36%), Positives = 94/161 (58%), Gaps = 7/161 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ +  +  L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI-EDSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  +LVY +   +SF+ +  +RE+ L      D ++ P V++GNK D+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQIL---RVKDRDDVPIVLVGNKCDL 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +  N RVVS ++ K   A +   P+ ETSAKE  NV+ AF 
Sbjct: 120 E--NERVVSTEEGKE-LARQWGCPFLETSAKERINVDEAFY 157

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  115 bits (290), Expect = 6e-33
 Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 18/170 (10%)

Query: 13  ILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++G  GVGK+SL+N  +  +    S+    T   D   KE+        L + DT G + 
Sbjct: 2   VVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKV--KLVLVDTPGLDE 59

Query: 70  FQSLGVA-----FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           F  LG         RGAD  +LV D    +S ++        L +      E  P +++G
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRK------EGIPIILVG 113

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           NK D+     R V E       A    +P FE SAK G  V+  FE + +
Sbjct: 114 NKIDLL--EEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  111 bits (279), Expect = 3e-31
 Identities = 54/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q++   F   Y  TI  D  TK+ + + +   L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI-EDSYTKQCEIDGQWARLDILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F ++   + R  +  +LV+ V    SF+ ++ +  + L      D + FP +++GNK D
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQIL---RVKDRDEFPMILVGNKAD 118

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           ++  + R VS ++ +   A +  IPY ETSAK+  NV+ AF 
Sbjct: 119 LE--HQRQVSREEGQEL-ARQLKIPYIETSAKDRVNVDKAFH 157

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  110 bits (277), Expect = 5e-31
 Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 11/170 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+I+LGDS VGK+ L+ +++   +  Q  +T          +FE +   +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RFQ++  ++Y  A  C+LV+DV    ++ NL+ W EE L +  P      P +V+ NK D
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEE-LREYRPE----IPCIVVANKID 115

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +D      V++KK     A K N+P +  SA +G NV   F+   K A+ 
Sbjct: 116 LDPS----VTQKKFNF--AEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  111 bits (279), Expect = 1e-30
 Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 7/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           +K+++LGD   GKTSL+ ++    F   YK TIG DF ++ +     L  TLQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GNK 126
           +    +   +  GA    LVYD+   +SF+NL +W    +++    + E  P +VL GNK
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLS--VVKKVNEESETKPKMVLVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           TD++  ++R V+ +K   +         F  SAK G  V   F+ IA
Sbjct: 119 TDLE--HNRQVTAEKHARFAQENDMESIF-VSAKTGDRVFLCFQRIA 162

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  110 bits (276), Expect = 1e-30
 Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 30/180 (16%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQIW 62
           K++++GD G GKT+ + +++  +F  +Y AT+G      DF T   +++F        +W
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFN-------VW 54

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           DTAGQE+F  L   +Y    C ++++DV    ++ N+ NW  + +        EN P V+
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVL 109

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            GNK D        + ++K K    +   K N+ Y+E SAK  +N E  F  +A+  L N
Sbjct: 110 CGNKVD--------IKDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN 161

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  108 bits (272), Expect = 6e-30
 Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 16/202 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +KV++LG   VGKTSL+ +YV+ +F    Y+ TIGA F+ K +   +R+ TL IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++   +YRGA   ++ YD+    SF+    W +E       +  E+    + G K+
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-----QNLEEHCKIYLCGTKS 115

Query: 128 DV--DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK---NEPQ 182
           D+     + R V     + + A +    +FETS+K G NV+  F+ +A++ +    N+  
Sbjct: 116 DLIEQDRSLRQVDFHDVQDF-ADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMN 174

Query: 183 EEDYLPDTIDVGGGQQQRSSGC 204
            E      +D+G  +      C
Sbjct: 175 TE----KGVDLGQKKNSYFYSC 192

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  106 bits (267), Expect = 2e-29
 Identities = 55/161 (34%), Positives = 89/161 (55%), Gaps = 8/161 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK---RVKDSDDVPMVLVGNKCD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +    +R VS ++ +    S G IPY ETSAK    VE AF
Sbjct: 118 LA---ARTVSTRQGQDLAKSYG-IPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  105 bits (265), Expect = 6e-29
 Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 16/176 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++GD  VGKT L+  Y   KF  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  +L + V+   SF+N+   W  E +    P    N P +++G K 
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPE-IKHYCP----NVPIILVGTKI 114

Query: 128 DV-DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAK 174
           D+ D GN+    EKK K     +G         + Y E SA     ++  F+   +
Sbjct: 115 DLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score =  107 bits (268), Expect = 6e-29
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 48/232 (20%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV++LGD  VGKTSL+++Y+ R+F     +T+G  F  K+       + + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQW----GPYNISIWDTAGRE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  LG  + RGA   +L YDV+ ++S + L    E+  +  + +  E+  F V+GNK D
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEEL----EDRFLGLTDTANEDCLFAVVGNKLD 111

Query: 129 VDGGNS-----------------RVVSEKKAKAW----------------CASKGNIPYF 155
           +    +                 R V+ + AKA+                 A K     F
Sbjct: 112 LTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEK---MCF 168

Query: 156 ETSAKEGFNVEAAFECIAKNAL---KNEPQEEDYLPDTIDVGGGQQQRSSGC 204
           ETSAK G+NV+  FE +    L     +  E +    T+++   ++ +S  C
Sbjct: 169 ETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  105 bits (262), Expect = 3e-28
 Identities = 61/166 (36%), Positives = 96/166 (57%), Gaps = 8/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDSGVGK+SL+  +++    +    TIG DF  K++    +   L IWDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
           RF++L  ++YR A   +LVYDV   ++F NL++ W +E  + ++  D      +++GNK 
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK---MLVGNKV 130

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D +    R VS ++  A  A +    + E SAK   NVE  FE +A
Sbjct: 131 DRESE--RDVSREEGMA-LAKEHGCLFLECSAKTRENVEQCFEELA 173

Length = 211

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  103 bits (257), Expect = 7e-28
 Identities = 60/164 (36%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++GD  VGKT L+N++    F   YKATIG DF  +  +     F+LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+ +   +YRGA   ++V+D+  + S ++   W E+ L +  PS      F+V G K D+
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSV--LLFLV-GTKKDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
                  + E+ A    A +    Y+  SA  G NV   F  +A
Sbjct: 119 SSPAQYALMEQDA-IKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  103 bits (259), Expect = 1e-27
 Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 33/184 (17%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQIW 62
           K+I++GD GVGKT+ + +++  +F  +Y  T+G +     F T    + F        +W
Sbjct: 11  KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN-------VW 63

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNW-REEFLIQASPSDPENFPFV 121
           DTAGQE+F  L   +Y    C ++++DV    ++ N+ NW R+   +       EN P V
Sbjct: 64  DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV------CENIPIV 117

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           ++GNK D        V +++ KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 118 LVGNKVD--------VKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARR-LT 168

Query: 179 NEPQ 182
           N+P 
Sbjct: 169 NDPN 172

Length = 215

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  101 bits (254), Expect = 2e-27
 Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 6/160 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F   Y  TI  D   K+V+ + R   L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTI-EDSYRKQVEIDGRQCDLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +     +LVY V    S + L   RE+ L      D +N P V++GNK D+
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL---RIKDSDNVPMVLVGNKADL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + R VS +   +     GN+P++ETSA++  NV+  F
Sbjct: 119 E--DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  100 bits (250), Expect = 7e-27
 Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 13/174 (7%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +++++GDSGVGKT L+ ++ + +F + + +TIG DF  K ++ +     +QIWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD---PENFPFVVLGN 125
           R+Q++   +YR A    LVYD++  +S+ ++  W        S  D   PE    +++GN
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKW-------VSDVDEYAPEGVQKILIGN 113

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           K   D    R V +++        G + +FETSA    N++ +F  + +  L+ 
Sbjct: 114 KA--DEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNKNIKESFTRLTELVLQA 164

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 98.8 bits (246), Expect = 2e-26
 Identities = 55/160 (34%), Positives = 93/160 (58%), Gaps = 6/160 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+++ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI-EDSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +   +SF++L + RE+ L      D E+ P +++GNK D+
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVVS+++ +      GN P+ ETSAK   NV+  F
Sbjct: 119 E--DERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 98.9 bits (247), Expect = 3e-26
 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 20/195 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG   VGK+SL  Q+V   F   Y  TI   F +K + ++ + + L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L   +  G    +LVY V   KSF+ +    ++ L        E+ P V++GNK+D+
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG---KESVPIVLVGNKSDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD 189
                R VS ++ K   A      + E+SAKE  NVE AFE + +   K E         
Sbjct: 119 H--MERQVSAEEGKK-LAESWGAAFLESSAKENENVEEAFELLIEEIEKVE--------- 166

Query: 190 TIDVGGGQQQRSSGC 204
                     + S C
Sbjct: 167 ----NPLPPGQKSKC 177

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 97.5 bits (243), Expect = 8e-26
 Identities = 53/160 (33%), Positives = 85/160 (53%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK-ADSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   ++R  +  +LV+ +  M+SF  L  +RE+ L      + +N P +++GNK D+
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQIL---RVKEDDNVPLLLVGNKCDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +      V E       A +  + Y ETSAK   NV+  F
Sbjct: 118 EDKRQVSVEEAANL---AEQWGVNYVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 96.8 bits (241), Expect = 1e-25
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 10/170 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFTLQ--IWDT 64
            +  ++GD  VGK++L+  + +    F   Y  T G D + K V   D   +++  I+D+
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQE F  +    +       +VYDV    SF+N + W       +      + P V++G
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGL---HTPGVLVG 117

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           NK D+     R V   +A+A  A    + ++ETSAKEG   EA F  +A+
Sbjct: 118 NKCDLTD--RREVDAAQAQAL-AQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q++   F ++Y  TI  D   K+   ++    L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI-EDSYRKQCVIDEETCLLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R     + VY +    SF+ + ++RE+ L      D +  P +++GNK D+
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQIL---RVKDKDRVPMILVGNKCDL 122

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF----ECIAKNALKNEPQEED 185
           D  + R VS  + +   A    IP+ ETSAK+  NV+ AF      I K   ++ P ++ 
Sbjct: 123 D--SERQVSTGEGQE-LAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKEDMPSQKQ 179

Length = 189

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 96.1 bits (240), Expect = 3e-25
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 17/179 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GD  VGKT L+  Y    F   Y  T+  +  + +V+ + +   L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
             L    Y   D  ++ + V+   SF+N    W  E +    P    N P +++G K D+
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPE-VKHFCP----NVPIILVGTKLDL 114

Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D      +S+KK +     +G         + Y E SA     V   FE   + AL 
Sbjct: 115 RNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 96.3 bits (240), Expect = 5e-25
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 24/187 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQ 67
           +K++++GD G GKT L+  Y    F  +Y  T+  +++T  +Q  +  +  L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVT-TLQVPNGKIIELALWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREE---FLIQASPSDPENFPFVVL 123
           E +  L    Y   D  ++ Y V+   S DN  + W  E   F            P V++
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC--------PGTPIVLV 114

Query: 124 GNKTDVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           G KTD+    + V          V+ ++ ++   S G + Y E SAK   NV+  F+   
Sbjct: 115 GLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAI 174

Query: 174 KNALKNE 180
             AL   
Sbjct: 175 NVALSKS 181

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 96.1 bits (239), Expect = 6e-25
 Identities = 55/175 (31%), Positives = 88/175 (50%), Gaps = 6/175 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD GVGKT+L  Q     F   Y  TI  D   K+V  + +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI-EDSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + +L   + R  +  +LVY +    +F+ +  +RE+   +       + P +++GNK D 
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ-RVKDESAADVPIMIVGNKCDK 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                R VS ++  A  A +    + E SAK   NVE AF  + + AL+ + Q  
Sbjct: 119 V--YEREVSTEEGAA-LARRLGCEFIEASAKTNVNVERAFYTLVR-ALRQQRQGG 169

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 94.5 bits (235), Expect = 1e-24
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 13/163 (7%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V+  F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFL-IQASPSDPENFPFVVLGNKTD 128
           F S+   + +     ++VY +   ++F ++   R++ + ++      E  P +++GNK D
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGY----EKVPIILVGNKVD 117

Query: 129 VDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
           ++       +E +A A  W       P+ ETSAK    V   F
Sbjct: 118 LESEREVSSAEGRALAEEWGC-----PFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 95.2 bits (237), Expect = 2e-24
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 24/178 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-----DFLTK--EVQFEDRLFTLQI 61
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T   +++F         
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY-------C 66

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAGQE+F  L   +Y    C ++++DV    ++ N+  W  + L +      EN P V
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC----ENIPIV 121

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           + GNK DV    +R V  K+       K N+ Y+E SAK  +N E  F  +A+    +
Sbjct: 122 LCGNKVDV---KNRQVKAKQVTF--HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174

Length = 219

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 91.0 bits (226), Expect = 2e-23
 Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 7/160 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQ 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +     VLVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 118

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++ +   A +    + ETSAK   NV   F
Sbjct: 119 E--DERVVGKEQGQN-LARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 90.1 bits (224), Expect = 5e-23
 Identities = 41/164 (25%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           K++I+GD  VGK++L+N+ +  K S  +YK     +++T  ++ + + +   + DTAGQE
Sbjct: 3   KIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNV-MKSF-DNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            + ++   +YR  +  + V+D+ + +    + L    +E +  A        P +++GNK
Sbjct: 63  DYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA----ESGVPIILVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+       +    A  +    G  P    SA+ G N+++AF+
Sbjct: 119 IDL---RDAKLKTHVAFLFAKLNGE-PIIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 89.8 bits (222), Expect = 1e-22
 Identities = 52/141 (36%), Positives = 84/141 (59%), Gaps = 7/141 (4%)

Query: 33  FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92
           F N Y++TIG DFL+K +  ++    LQ+WDTAGQERF+SL  ++ R +   ++VYD+  
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 93  MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152
            +SF+N   W ++ L +      ++    ++GNKTD+ G   +V  E+  +   A + N 
Sbjct: 65  RQSFENTTKWIQDILNERG----KDVIIALVGNKTDL-GDLRKVTYEEGMQK--AQEYNT 117

Query: 153 PYFETSAKEGFNVEAAFECIA 173
            + ETSAK G N++  F+ IA
Sbjct: 118 MFHETSAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 90.0 bits (223), Expect = 1e-22
 Identities = 52/170 (30%), Positives = 95/170 (55%), Gaps = 8/170 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLK +++GDS VGK  ++    +    + Y   +G D+ T  +  + R   LQ+WDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            RF ++  ++ RGA   +LVYD+    SFD ++ W +E + + +P  P+    +++GN+ 
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKE-IDEHAPGVPK----ILVGNRL 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
            +     R V+ ++A+A+ A +  + +FE S    FN+  +F  +A+  L
Sbjct: 121 HL--AFKRQVATEQAQAY-AERNGMTFFEVSPLCNFNITESFTELARIVL 167

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 88.5 bits (219), Expect = 5e-22
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 26/172 (15%)

Query: 14  LGDSGVGKTSLMNQYVNRKFSNQYKATIGA-----DFLTKEVQFEDRLFTLQIWDTAGQE 68
           +GD G GKT+ + +++  +F  +Y AT+G       F T             +WDTAGQE
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIR-----FNVWDTAGQE 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y    C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 56  KFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 110

Query: 129 VDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   V ++K KA   +   K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 111 --------VKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 80.6 bits (199), Expect = 4e-19
 Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 17/187 (9%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKTSL+  +   +F  +Y  T+  +++T + + + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEE 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128
           ++ L    Y  A   ++ + ++   S +N+   W EE   +  P    N P +++G K D
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVR-RYCP----NVPVILVGLKKD 116

Query: 129 V--------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL--K 178
           +        +      V  ++AK    + G   Y E SA  G  V+  FE   + AL  +
Sbjct: 117 LRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176

Query: 179 NEPQEED 185
              +EE 
Sbjct: 177 KSGKEEP 183

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 80.0 bits (198), Expect = 4e-19
 Identities = 47/172 (27%), Positives = 90/172 (52%), Gaps = 9/172 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ +LG SGVGK++L  +++ ++F  +Y+  + + + +++V  +    +L+I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLY-SRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 70  FQS--LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +         R AD  VLVY +    SFD ++   +  LI+         P +++GNK 
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQ--LIREIKKRDGEIPVILVGNKA 117

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN-VEAAFECIAKNALK 178
           D+   +SR VS ++ +   A +    +FE SA E +  V+  F  + +   +
Sbjct: 118 DLL--HSRQVSTEEGQK-LALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 77.6 bits (191), Expect = 3e-18
 Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++ G  GVGK+SL+ ++V   F   Y  TI  D   + +     + TLQI DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISCSKSICTLQITDTTGSHQ 61

Query: 70  FQSL-------GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           F ++       G AF       +LVY +   +S + L    E  + +   ++ E  P ++
Sbjct: 62  FPAMQRLSISKGHAF-------ILVYSITSKQSLEELKPIYEL-ICEIKGNNLEKIPIML 113

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +GNK   D   SR VS  +  A  A   N  + ETSAK   NV+  F+
Sbjct: 114 VGNKC--DESPSREVSSSEGAA-LARTWNCAFMETSAKTNHNVQELFQ 158

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 78.0 bits (192), Expect = 6e-18
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 6/161 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++ +G +GVGKT+L+ +++   F  +++ T+  +  +KE +      T+ I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTV-EELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++     +  D   LVY V+  +SF+ +   REE L           P VV+GNK  +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFV---PIVVVGNK--I 114

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D    R V    A +      N  + E SAK+  NV   F+
Sbjct: 115 DSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFK 155

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 78.3 bits (193), Expect = 9e-18
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 10/179 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG S VGKT+++++++  +F  QY  TI  DF  K       ++ L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI-EDFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS-----PSDPENFPFVVLG 124
           F ++        D  +LV+ ++  +SF+ +   RE+ L   S       +    P V+ G
Sbjct: 61  FPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           NK D D    R V   + +       N  YFE SAK+  N++  F  +   +L   P E
Sbjct: 121 NKADRD--FPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF--SLAKLPNE 175

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 76.7 bits (189), Expect = 2e-17
 Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 8/178 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            +V++LGDSGVGK+SL N +    + +      G D   + V  +    TL ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP-ENFPFVVLGNKT 127
               L  +  +  D  V+VY V    SF+       E  IQ   +   E+ P +++GNK+
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA----SELRIQLRRARQAEDIPIILVGNKS 116

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
           D+    SR VS ++ +A CA   +  + ETSA    NV+  FE I +        +E 
Sbjct: 117 DL--VRSREVSVQEGRA-CAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKEK 171

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 75.7 bits (186), Expect = 2e-17
 Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK+++  Q+++  F + +  TI  D    + + ++    L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI-EDAYKTQARIDNEPALLDILDTAGQAE 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  ++ Y V    SF   + ++ E + +   ++  + P V++GNK D+
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK-ELITRVRLTE--DIPLVLVGNKVDL 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +    R V+ ++ +   A + N P+FETSA   F ++ AF  + +   + E
Sbjct: 120 E--QQRQVTTEEGRN-LAREFNCPFFETSAALRFYIDDAFHGLVREIRRKE 167

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 72.5 bits (178), Expect = 2e-16
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 10/166 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ I+G+   GK++L+++Y+   +  Q ++  G  F  KEV  + +   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRF-KKEVLVDGQSHLLLIRDEGGA- 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
                   F    D  + V+ +    SF  +     +     + S+    P +++G +  
Sbjct: 58  ----PDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISE---IPLILVGTQDA 110

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   N RV+ + +A+  CA      Y+ET A  G NVE  F+  A+
Sbjct: 111 ISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + +   LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQD 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F  L    Y   D  +L + V    SF N+    E+++ +    +P   P +++G + D
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNI---SEKWIPEIRKHNP-KAPIILVGTQAD 115

Query: 129 ----------VDGGNSRVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFE 170
                     +     + VS+ +AKA  A K G   Y E SA    N++  F+
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKA-LAEKIGACEYIECSALTQKNLKEVFD 167

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 29/186 (15%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWD----- 63
           ++V +LG  GVGKT+++ Q++ ++F  +Y  T         V    R++ L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 64  ----TAGQE----RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115
               TAGQE    RF+ L     R +   +LVYD+    SF  +   R++ L      + 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 116 ENFPFVVLGNKTDVDGGN---SRVVSEKKAKAW-CASKGNIPYFETSAKEGFNVEAAFEC 171
           E  P VV+GNK D          V+S    K+W C       Y E SAK  +++   F+ 
Sbjct: 116 EP-PIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCG------YLECSAKYNWHILLLFKE 168

Query: 172 IAKNAL 177
           +  +A 
Sbjct: 169 LLISAT 174

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 70.3 bits (172), Expect = 3e-15
 Identities = 49/186 (26%), Positives = 73/186 (39%), Gaps = 21/186 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LGD   GKTSL+N +    F   Y+ T+  ++   ++  +     L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTD 128
           F  L    Y      +L + V+   S +N+ + W  E               V++  K D
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR-----HHCPGVKLVLVALKCD 115

Query: 129 VDGGNSRVVSEKK----------AKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +    +                 AK   A +    Y E SAK    V  AF   A+ AL 
Sbjct: 116 LREPRNERDRGTHTISYEEGLAVAKRINACR----YLECSAKLNRGVNEAFTEAARVALN 171

Query: 179 NEPQEE 184
             P   
Sbjct: 172 ARPPHP 177

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+ +LGD+ +GKTSLM +YV  +F  +Y  T+G +F+ K +       T  IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F ++     + A   + ++D+    + +++  W      QA   +    P +V G K D
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYR----QARGFNKTAIPILV-GTKYD 115

Query: 129 V----DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           +           ++ K+A+ + A     P    S     NV+  F+ +
Sbjct: 116 LFADLPPEEQEEIT-KQARKY-AKAMKAPLIFCSTSHSINVQKIFKFV 161

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 65.8 bits (161), Expect = 8e-14
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQE 68
           K++++G  GVGKTSL  Q +  KF     +T G +    ++   +R    L +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            + +    F       +LV+D+        +  W     I+A        P +++G   D
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWL--RQIKAFGGVS---PVILVGTHID 117

Query: 129 V 129
            
Sbjct: 118 E 118

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL--TKEVQFEDRLFTLQIWDTAGQ 67
           KV+++GD G GK+SL++Q V  +F  +     G      T EV  +  L    IWD  G+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLL--NIWDFGGR 58

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E  +   + F + AD  +LVYD+   +S + ++      L        +  P +++GNK 
Sbjct: 59  EELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAW-LPNLRKLGGKI-PVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 18/173 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L+  +    F   Y  T+  +  T   + + +   L +WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E   +  P    N P +++G K+D
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCP----NTPVLLVGCKSD 116

Query: 129 --------VDGGNSRV--VSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFE 170
                    +  N R   VS ++ +      G   Y E SAK    +V   FE
Sbjct: 117 LRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFE 169

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    YRGAD  +L + +    S++N L  W  E L   +P      P V++G K 
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPE-LRHYAP----GVPIVLVGTKL 115

Query: 128 D--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D         D   +  ++  + +      G   Y E S+K   NV+A F+   K  L
Sbjct: 116 DLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 65.7 bits (160), Expect = 8e-13
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 25/173 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-------------EDR 55
           ++V+++GDSGVGK+SL++  V      +   TIG     K + +              +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 56  LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115
            F +++WD +G ER++     FY   +  + V+D++  ++  +L  W  E     + S P
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 116 EN--------FPFVVLGNKTDVDGGNSRVVSEKK----AKAWCASKGNIPYFE 156
                      P++V+GNK D+        S       A+ W   +G +P  E
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLPSSE 194

Length = 334

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 17/179 (9%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +  L    Y   D  ++ + ++   S +N+   W  E      P    N P +++GNK D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCP----NVPIILVGNKKD 116

Query: 129 VDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +      +          V  ++ +A     G   Y E SAK    V   FE   + AL
Sbjct: 117 LRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 25/172 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-----EDRLFTLQIWD 63
           +KV++LGDSGVGK+SL++     +       T+G     +   +     E++ F +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 64  TAGQ----ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREE----------FLIQ 109
             G     E  +S    FY   +  + V+D+   KS  NL  W  E           L+ 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 110 ASPSDPENF-----PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156
               D E F     P +V+G K D      R     +  A+ +   N     
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRT-AFLSEDFNAEEIN 171

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 61.6 bits (149), Expect = 5e-12
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF N+   +EE++ +     P N P++++G + D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPYLLIGTQID 115

Query: 129 V 129
           +
Sbjct: 116 L 116

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQY-----KATIGADFLTKEVQFEDRLFTLQIWD 63
           ++++++GD GVGK+SL+   V+ +F         + TI AD         +R     I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV------TPER-VPTTIVD 55

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           T+ + + ++   A  R A+   LVY V+   + + +        +          P +++
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERI----RTKWLPLIRRLGVKVPIILV 111

Query: 124 GNKTD-VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           GNK+D  DG +   + E+        +      E SAK   NV   F    K  L
Sbjct: 112 GNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 166

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G  T 
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVG--TQ 114

Query: 129 VDGGNSRVVSEKKAK 143
           +D  +     EK AK
Sbjct: 115 IDLRDDPSTIEKLAK 129

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E +    P    N P +++G K 
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 115

Query: 128 DV--DGGNSRVVSEKK--------AKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 116 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 168

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 58.4 bits (142), Expect = 4e-11
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++++LG  G GKT+++ + +          TIG  F  + V++++      +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYK-LKLGEVVTTIPTIG--FNVETVEYKN--VKFTVWDVGGQDK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L   +Y   D  + V D +  +  +   N   + L +    + +  P ++L NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNE---EELKGAPLLILANKQDL 112

Query: 130 DGGNS-RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            G  +   + E         +        SA  G  ++   + + + 
Sbjct: 113 PGALTESELIELLGLESIKGR-RWHIQPCSAVTGDGLDEGLDWLIEQ 158

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 58.5 bits (141), Expect = 8e-11
 Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 24/188 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  + +   + R  +L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   +  ++ + +    S++N+ + W  E +    P    N P +++G K 
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPE-VCHHCP----NVPILLVGTKK 117

Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSA------KEGFNVEAAFEC 171
           D+      +          ++ ++  A       + Y E SA      KE F  EA    
Sbjct: 118 DLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFA-EAVRAV 176

Query: 172 IAKNALKN 179
           +    +K+
Sbjct: 177 LNPTPIKD 184

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 21/170 (12%)

Query: 13  ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72
           ++G    GKT+L+N   + +FS     T+G  F  ++V   +   T+++WD  GQ RF+S
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGN--VTIKVWDLGGQPRFRS 59

Query: 73  LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132
           +   + RG +  V V D    +  +   N   + L + S    E  P +VLGNK D+ G 
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPS---LEGIPLLVLGNKNDLPGA 116

Query: 133 NSRV-------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            S         +     +           +  SAKE  N++   + + K+
Sbjct: 117 LSVDELIEQMNLKSITDREVSC-------YSISAKEKTNIDIVLDWLIKH 159

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N   +++G K+D
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKMLLVGCKSD 120

Query: 129 --------VDGGNSRV--VSEKKAKAWCASKGNIPYFETSAKEGFN 164
                   V+  N R   VS  +        G   Y E SA +  N
Sbjct: 121 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG    GKT+++ +    +       TIG  F  + V +++      +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVT-TIPTIG--FNVETVTYKN--VKFTVWDVGGQE 69

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             + L   ++   D  + V D       D +   +EE     +  +  + P ++L NK D
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSA---DRDRIEEAKEELHALLNEEELADAPLLILANKQD 126

Query: 129 VDG 131
           + G
Sbjct: 127 LPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIW 62
           V+ILG    GKT+ + Q    KFS  YK         T+G +  T EV        L  W
Sbjct: 2   VLILGLDNAGKTTFLEQ-TKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKA----RLMFW 56

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           D  GQE  +SL   +Y  A+   ++Y ++     +  N  +  F    +    E  P +V
Sbjct: 57  DLGGQEELRSLWDKYY--AESHGVIYVIDSTDR-ERFNESKSAFEKVINNEALEGVPLLV 113

Query: 123 LGNKTDVDG 131
           L NK D+  
Sbjct: 114 LANKQDLPD 122

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 25/165 (15%)

Query: 10  KVIILGDSGVGKTSLMNQYVNR------------KFSNQYKATIGADFLTKEVQFEDRLF 57
           K++++G  G GKT+ +    ++                +   T+  DF + E+   D   
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDT 68

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            + ++ T GQERF+ +     RGA   +++ D +   +F        E +I    S    
Sbjct: 69  GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF------HAEEIIDFLTSR-NP 121

Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162
            P VV  NK D+         EK  +A      ++P  E  A EG
Sbjct: 122 IPVVVAINKQDLFDALP---PEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 7/121 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 73

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  + FD+ L  WR E L    PS       +++G KTD
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEIL-DYCPST----RILLIGCKTD 128

Query: 129 V 129
           +
Sbjct: 129 L 129

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 23/140 (16%)

Query: 9   LKVIILGDSGVGKTSLM-----NQYVNRKFSNQYKATIGADFLTKEVQF---EDRLFTLQ 60
           L +++LG    GKT+++     N++VN         T G  F T++++      +  T  
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTV------PTKG--FNTEKIKVSLGNAKGVTFH 55

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYD-VNVMKSFDNLNNWREEFLIQASPSDPENFP 119
            WD  GQE+ + L  ++ R  D  V V D V+V    + +   + E       S+ +  P
Sbjct: 56  FWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----ERMEEAKTELHKITKFSENQGVP 111

Query: 120 FVVLGNKTDVDGGNSRVVSE 139
            +VL NK D+   N+  VSE
Sbjct: 112 VLVLANKQDL--PNALPVSE 129

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 30/158 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD---FLTKEVQFEDRLFTLQIWDTAG 66
           KVII+G    GKT+++ Q++          TIG++    + K ++F        +WD  G
Sbjct: 17  KVIIVGLDNAGKTTILYQFL-LGEVVHTSPTIGSNVEEIVYKNIRFL-------MWDIGG 68

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLG 124
           QE  +S    +Y   D  +LV D     S D   L   +EE     +  D      +VL 
Sbjct: 69  QESLRSSWNTYYTNTDAVILVID-----STDRERLPLTKEELYKMLAHEDLRKAVLLVLA 123

Query: 125 NKTDVDGGNSRV-VSEK------KAKAW-----CASKG 150
           NK D+ G  +   +SE       +   W     CA  G
Sbjct: 124 NKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V++LG    GK++L+ +  + +       T+G  F  + +Q E +  +L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP--ENFPFVVLGNKT 127
            +++   +    D  V V D +     D      +  L      +   +  P V+L NK 
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHIL-----KNEHIKGVPVVLLANKQ 111

Query: 128 DVDGG-NSRVVSEK-KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+ G   +  ++ + K K +C+ + +      SA  G  +  AF  +A 
Sbjct: 112 DLPGALTAEEITRRFKLKKYCSDR-DWYVQPCSAVTGEGLAEAFRKLAS 159

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 22/97 (22%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD+  GKT+L++ +    +   Y  T+  ++ T   + +     L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREE 105
           + ++    Y  +D  ++ +D++  ++ D+ L  W+ E
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGE 98

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
              R  +++++LG    GKT+++ Q  +   S     T G  F  K VQ +   F L +W
Sbjct: 10  PSSRQEVRILLLGLDNAGKTTILKQLASEDIS-HITPTQG--FNIKNVQADG--FKLNVW 64

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           D  GQ + +     ++   D  + V D    K F+       E L +   +     P +V
Sbjct: 65  DIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLA---GVPVLV 121

Query: 123 LGNKTDV 129
             NK D+
Sbjct: 122 FANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 32/176 (18%)

Query: 10  KVIILGDSGVGKTSL-----MNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +++ILG  G GKT++     + + V          TIG  F  + V +++  F  Q+WD 
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVV------TTIPTIG--FNVETVTYKNLKF--QVWDL 50

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
            GQ   +     +Y  ++   ++Y V+     D L   + E        + ++   +V  
Sbjct: 51  GGQTSIRPYWRCYY--SNTDAIIYVVDSTDR-DRLGISKSELHAMLEEEELKDAVLLVFA 107

Query: 125 NKTDVDGGNSRV-VSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           NK D+ G  S   V+EK      K + W      I  F+TSA +G  ++   + + 
Sbjct: 108 NKQDMPGALSEAEVAEKLGLSELKDRTW-----QI--FKTSATKGEGLDEGMDWLV 156

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 29/135 (21%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRK--FSN-------QYKATIGADFLTKEVQFEDRLFTLQ 60
           KV+++G  G GK+S+      R   FSN       +  ATI    + +         TL 
Sbjct: 1   KVLLMGLRGSGKSSM------RSIIFSNYSPRDTLRLGATID---VEQSHVRFLGNLTLN 51

Query: 61  IWDTAGQERFQSLGVAFYRGA---DCCVLVY--DVNVMKSFDNLNNWRE--EFLIQASPS 113
           +WD  GQ+ F    +   +     +  VL+Y  DV   +  ++L    +  E L Q SP 
Sbjct: 52  LWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSP- 110

Query: 114 DPENFPFVVLGNKTD 128
              N    VL +K D
Sbjct: 111 ---NAKVFVLIHKMD 122

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 47/208 (22%), Positives = 83/208 (39%), Gaps = 53/208 (25%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT--------------IGADFLTKEVQFE 53
            +K +++GD+ VGKT L+      K   QY+                +  + L +     
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 54  DRLF-TLQIWDTAG----QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFL 107
           D +  +L++WDT G      RF     A+ R +D  +L + +    S  N+   W  E +
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPE-I 114

Query: 108 IQASPSDPENFPFVVLGNKTDV-----------------DGGNSRVVSEKKAKAWCASKG 150
               P  P     +++G K D+                    N+ ++  +  +A  A + 
Sbjct: 115 RHFCPRVPV----ILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAV-AKEL 169

Query: 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178
            IPY+ETS    F V+  F+    NA++
Sbjct: 170 GIPYYETSVVTQFGVKDVFD----NAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 36/163 (22%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA--------DFLTKEVQFEDRLFTLQ 60
           ++++++G    GKT+++           YK  +G          F  + V +++  FT  
Sbjct: 14  MRILMVGLDAAGKTTIL-----------YKLKLGESVTTIPTIGFNVETVTYKNISFT-- 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WD  GQ++ + L   +Y      + V D N     D ++  REE     +  +  +   
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSN---DRDRIDEAREELHRMLNEDELRDAVI 117

Query: 121 VVLGNKTDV-DGGNSRVVSEK------KAKAW-----CASKGN 151
           +V  NK D+ D   +  ++EK      + + W     CA+ G+
Sbjct: 118 LVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGD 160

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 6  RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
          R +    +LG  G GK++L+  ++ R FS N Y  TI   +    V+   +   L + + 
Sbjct: 2  RNVFLCFVLGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQEKYLILREV 61

Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSF 96
             E    L  A     D   LVYD +   SF
Sbjct: 62 GEDEEAILLNDAELAACDVACLVYDSSDPNSF 93

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V+ LG  G GKT+++ +    +F  Q   TIG  F  + V++++  FT  IWD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIG--FNVETVEYKNLKFT--IWDVGGKHK 55

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L   +Y      V V D +     D ++    E     +  +  +   ++  NK DV
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSS---HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112

Query: 130 DGG 132
            G 
Sbjct: 113 AGA 115

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG  G GKTSL++   + +       T G  F +  +  +D    +++ +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQD--AIMELLEIGGSQNL 57

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF--LIQASPSDPENFPFVVLGNKTD 128
           +     +  G+    L++ V+   S   L   R+E   L+Q  P      P VVL NK D
Sbjct: 58  RKYWKRYLSGSQ--GLIFVVDSADSER-LPLARQELHQLLQHPPD----LPLVVLANKQD 110

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 44/197 (22%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA------DFLTKEVQFEDRLFTLQIW 62
           LKV+I+G   VGK+SL+N  + R      +A +        D +  E         +++ 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRD-----RAIVTDIAGTTRDVI--EEDINLNGIPVRLV 270

Query: 63  DTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS 111
           DTAG        ER   +G+         AD  + V D +       L+      +    
Sbjct: 271 DTAGIRETDDVVER---IGIERAKKAIEEADLVLFVLDAS-----QPLDKEDLALIELL- 321

Query: 112 PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
              P+  P +V+ NK D        +  K                 SAK G  ++A  E 
Sbjct: 322 ---PKKKPIIVVLNKAD--------LVSKIELESEKLANGDAIISISAKTGEGLDALREA 370

Query: 172 IAKNALKNEPQEEDYLP 188
           I +   K    +E    
Sbjct: 371 IKQLFGKGLGNQEGLFL 387

Length = 454

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 57/207 (27%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
           A +  +L   LKV+I G   VGK+SL+N  +  +     +A I     G   D + + + 
Sbjct: 206 ARQGEILREGLKVVIAGRPNVGKSSLLNALLGEE-----RA-IVTDIAGTTRDVIEEHIN 259

Query: 52  FEDRLFTLQIWDTAG------------QER-FQSLGVAFYRGADCCVLVYDVNVMKSFDN 98
            +     L   DTAG             ER  +++       AD  +LV D +   + ++
Sbjct: 260 LDGIPLRLI--DTAGIRETDDEVEKIGIERSREAI-----EEADLVLLVLDASEPLTEED 312

Query: 99  LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158
                E           ++ P +V+ NK D+ G           +     +   P    S
Sbjct: 313 DEILEE----------LKDKPVIVVLNKADLTG-----------EIDLEEENGKPVIRIS 351

Query: 159 AKEGFNVEAAFECIAKNALKNEPQEED 185
           AK G  ++   E I + A       ++
Sbjct: 352 AKTGEGIDELREAIKELAFGGFGGNQE 378

Length = 449

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 33/127 (25%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 50  VQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN--VMKSFDNLNNWREEFL 107
           V+FE     +   DT G E F    V     AD  +LV D N  V            E L
Sbjct: 55  VEFEWPKRRINFIDTPGHEDFSKETVRGLAQADGALLVVDANEGVEPQT-------REHL 107

Query: 108 IQASPSDPENFPFVVLGNKTDVDGGN------SRVVSEKKAKAWCASKG-NIPYFETSAK 160
             A        P +V  NK D  G          +    K   +   KG ++P    SA 
Sbjct: 108 NIALAGGL---PIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPISAL 164

Query: 161 EGFNVEA 167
            G  +E 
Sbjct: 165 TGEGIEE 171

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 40  TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL 99
           TIG  F  + V++++  FT  +WD  GQ++ + L   +Y+  +  + V D N     + +
Sbjct: 48  TIG--FNVETVEYKNLKFT--MWDVGGQDKLRPLWRHYYQNTNGLIFVVDSN---DRERI 100

Query: 100 NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV-VSEK 140
            + REE     S  +  +   +V  NK D+    S   V+EK
Sbjct: 101 GDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEK 142

Length = 182

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 49/186 (26%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G   VGK+SL+N    R      +A I     G   D + +E+        +++
Sbjct: 4   IKVVIAGKPNVGKSSLLNALAGRD-----RA-IVSDIAGTTRDVIEEEIDLGG--IPVRL 55

Query: 62  WDTAGQ-------ERFQSLGV--AFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQA 110
            DTAG        E+   +G+  A      AD  +LV D +  +  D      E+  I  
Sbjct: 56  IDTAGLRETEDEIEK---IGIERAREAIEEADLVLLVVDAS--EGLDE-----EDLEILE 105

Query: 111 SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            P+     P +V+ NK+D+                 +     P    SAK G  ++   E
Sbjct: 106 LPAKK---PVIVVLNKSDL----------LSDAEGISELNGKPIIAISAKTGEGIDELKE 152

Query: 171 CIAKNA 176
            + + A
Sbjct: 153 ALLELA 158

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 40/165 (24%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYK----------ATIGADFLTKEVQFEDRLFT 58
           ++++++G    GKT+++           YK           TIG  F  + V++++  FT
Sbjct: 1   MRILMVGLDAAGKTTIL-----------YKLKLGEIVTTIPTIG--FNVETVEYKNISFT 47

Query: 59  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF 118
             +WD  GQ++ + L   +++     + V D N     + +   REE     +  +  + 
Sbjct: 48  --VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN---DRERIGEAREELQRMLNEDELRDA 102

Query: 119 PFVVLGNKTDVDGG-NSRVVSEK------KAKAW-----CASKGN 151
             +V  NK D+    ++  V++K      + + W     CA+ G+
Sbjct: 103 VLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +++LG    GKT+++NQ    K SN     I          F+    +   +D +GQ ++
Sbjct: 2   ILVLGLDNSGKTTIINQL---KPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKY 58

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNN--WREEF--LIQASPSDPENFPFVVLGNK 126
           + L   +Y+     + V D     S D L     ++E   L+          P +   NK
Sbjct: 59  RGLWEHYYKNIQGIIFVID-----SSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANK 113

Query: 127 TDVDGGNSRV 136
            D+    + V
Sbjct: 114 MDLPDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 7/120 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG-Q 67
            ++I+G  G GKT+L                 I  + + +EV  +  L  +     +G  
Sbjct: 4   VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E    L +A  R     VL+ D        +L +  +E L+                N T
Sbjct: 64  ELRLRLALALARKLKPDVLILD-----EITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 36/181 (19%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD--FLTKEVQFEDRLFTLQIWDTAG 66
           +++++LG    GKT+++     +KF+ +  +TI     F  K +++    + L IWD  G
Sbjct: 15  MRILMLGLDNAGKTTIL-----KKFNGEDISTISPTLGFNIKTLEYNG--YKLNIWDVGG 67

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-----WREEFLIQASPSDPENFPFV 121
           Q+  +S    ++   D  + V D +     ++          EE L  A+         +
Sbjct: 68  QKSLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGAT--------LL 119

Query: 122 VLGNKTDVDG-------GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  NK D+ G            +   K+  W         F  SA  G N+    + +  
Sbjct: 120 IFANKQDLPGALSPEEIREVLELDSIKSHHWRI-------FGCSAVTGENLLDGIDWLVD 172

Query: 175 N 175
           +
Sbjct: 173 D 173

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 34/195 (17%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           V I+G   VGK++L+N  V +K S         +  I     T   Q    +F     DT
Sbjct: 9   VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQI---IFV----DT 61

Query: 65  AG--------QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
            G         E       +  +  D  + V  V+  + +       +EF+++       
Sbjct: 62  PGIHKPKHALGELMNKAARSALKDVDLILFV--VDADEGWGPG----DEFILEQLKK--T 113

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFNVEAAFECIAKN 175
             P +++ NK D            K  A+             SA +G NV+   E I + 
Sbjct: 114 KTPVILVVNKIDKV---KPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEY 170

Query: 176 ALKNEPQ-EEDYLPD 189
             +      ED + D
Sbjct: 171 LPEGPWYYPEDQITD 185

Length = 298

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 24/129 (18%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-DFLTKEVQFE--DRLFTLQIWDTAG 66
           +V ++G   VGK++L+N     K      A +      T++           + + DT G
Sbjct: 1   RVALVGRPNVGKSTLINALTGAK-----VAIVSDYPGTTRDPILGVLGLGRQIILVDTPG 55

Query: 67  --QERFQSLGVAFY-------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
             +   +  GV  +       R AD  +LV D +     + L    EE L +        
Sbjct: 56  LIEGASEGKGVEGFNRFLEAIREADLILLVVDAS-----EGLTEDDEEILEELEKLP--K 108

Query: 118 FPFVVLGNK 126
            P +++ NK
Sbjct: 109 KPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
PTZ00099	176	rab6; Provisional	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.93
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.92
COG1159	298	Era GTPase [General function prediction only]	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.92
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
PRK00089	292	era GTPase Era; Reviewed	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.91
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.9
COG1160	444	Predicted GTPases [General function prediction onl	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.9
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.89
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.89
KOG1673	205	consensus Ras GTPases [General function prediction	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.88
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.88
PRK00093	435	GTP-binding protein Der; Reviewed	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
PRK05433	600	GTP-binding protein LepA; Provisional	99.88
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.87
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.87
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.87
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
PRK10218	607	GTP-binding protein; Provisional	99.86
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.86
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.86
PRK12317	425	elongation factor 1-alpha; Reviewed	99.86
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.86
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.86
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.85
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.85
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.85
COG1084	346	Predicted GTPase [General function prediction only	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.85
COG0486	454	ThdF Predicted GTPase [General function prediction	99.85
COG0218	200	Predicted GTPase [General function prediction only	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.84
PRK12736	394	elongation factor Tu; Reviewed	99.84
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.84
PRK12735	396	elongation factor Tu; Reviewed	99.83
PRK04004	586	translation initiation factor IF-2; Validated	99.83
COG1163	365	DRG Predicted GTPase [General function prediction	99.83
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.82
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.82
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.82
COG2229	187	Predicted GTPase [General function prediction only	99.82
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.82
CHL00071	409	tufA elongation factor Tu	99.82
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.81
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.81
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
PRK00049	396	elongation factor Tu; Reviewed	99.8
PLN03126	478	Elongation factor Tu; Provisional	99.8
COG2262	411	HflX GTPases [General function prediction only]	99.8
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.8
PLN03127	447	Elongation factor Tu; Provisional	99.79
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.79
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.79
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.79
PLN00043	447	elongation factor 1-alpha; Provisional	99.78
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.78
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.78
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.77
PTZ00141	446	elongation factor 1- alpha; Provisional	99.77
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.77
COG0536	369	Obg Predicted GTPase [General function prediction	99.77
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.76
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.76
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.76
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.76
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.76
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.76
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.73
COG3596	296	Predicted GTPase [General function prediction only	99.73
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.73
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.72
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.72
KOG1145	683	consensus Mitochondrial translation initiation fac	99.72
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.72
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.72
PRK13351	687	elongation factor G; Reviewed	99.71
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.71
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.71
PRK09602	396	translation-associated GTPase; Reviewed	99.71
KOG0090	238	consensus Signal recognition particle receptor, be	99.7
PRK12739	691	elongation factor G; Reviewed	99.68
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.68
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.68
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.67
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.66
PRK09866	741	hypothetical protein; Provisional	99.66
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.64
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.64
PRK00007	693	elongation factor G; Reviewed	99.63
PRK12740	668	elongation factor G; Reviewed	99.62
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.61
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.6
PRK14845	1049	translation initiation factor IF-2; Provisional	99.59
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.59
PTZ00258	390	GTP-binding protein; Provisional	99.59
PRK07560	731	elongation factor EF-2; Reviewed	99.58
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.57
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.57
PRK13768	253	GTPase; Provisional	99.56
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.55
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.54
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.53
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.52
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.51
PRK09601	364	GTP-binding protein YchF; Reviewed	99.5
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.5
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.49
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.49
PTZ00416	836	elongation factor 2; Provisional	99.49
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.48
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.45
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.45
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.45
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.44
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.43
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.43
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.43
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.43
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.43
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.42
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.42
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.4
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.4
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.39
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.38
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.38
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.37
KOG0466	466	consensus Translation initiation factor 2, gamma s	99.37
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.35
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.35
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	99.34
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.34
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.34
KOG0410	410	consensus Predicted GTP binding protein [General f	99.33
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.3
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.3
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.3
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.28
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.27
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.27
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.22
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.22
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.15
KOG0460	449	consensus Mitochondrial translation elongation fac	99.13
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.09
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	99.07
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.05
KOG1143	591	consensus Predicted translation elongation factor	99.03
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.01
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.0
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.96
PRK12289	352	GTPase RsgA; Reviewed	98.95
KOG2486	320	consensus Predicted GTPase [General function predi	98.93
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.93
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.92
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.92
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.91
PRK00098	298	GTPase RsgA; Reviewed	98.91
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.89
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.87
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.83
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.8
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.8
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.79
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.76
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.76
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.76
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.72
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.72
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.72
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.71
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.71
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.7
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.69
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.67
COG1161	322	Predicted GTPases [General function prediction onl	98.66
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.66
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.63
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.63
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.62
cd03112	158	CobW_like The function of this protein family is u	98.58
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.56
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.55
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.54
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.54
PRK10416	318	signal recognition particle-docking protein FtsY;	98.53
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.53
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.49
PRK01889	356	GTPase RsgA; Reviewed	98.48
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.46
PRK14974	336	cell division protein FtsY; Provisional	98.46
PRK12288	347	GTPase RsgA; Reviewed	98.46
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.45
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.42
PRK13796	365	GTPase YqeH; Provisional	98.42
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.4
PRK13796	365	GTPase YqeH; Provisional	98.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.39
PRK12289	352	GTPase RsgA; Reviewed	98.38
COG1162	301	Predicted GTPases [General function prediction onl	98.3
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.3
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.29
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.27
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.27
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.24
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.22
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.19
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.19
cd03114	148	ArgK-like The function of this protein family is u	98.16
COG3523	1188	IcmF Type VI protein secretion system component Va	98.15
PRK00098	298	GTPase RsgA; Reviewed	98.13
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.11
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.11
KOG1533	290	consensus Predicted GTPase [General function predi	98.1
COG1162	301	Predicted GTPases [General function prediction onl	98.08
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.07
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.07
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.06
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.03
PRK10867	433	signal recognition particle protein; Provisional	98.01
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.99
PRK13695	174	putative NTPase; Provisional	97.99
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.95
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.95
TIGR00959	428	ffh signal recognition particle protein. This mode	97.94
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.93
COG0523	323	Putative GTPases (G3E family) [General function pr	97.93
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.92
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.9
KOG2484	435	consensus GTPase [General function prediction only	97.9
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.9
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.89
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.87
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.85
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.81
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.76
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.76
PRK08118	167	topology modulation protein; Reviewed	97.75
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.75
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.7
PRK07261	171	topology modulation protein; Provisional	97.7
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.68
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.68
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.65
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.65
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.64
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.63
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.62
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.61
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.59
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.56
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.55
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.54
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.5
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.49
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.48
PRK14530	215	adenylate kinase; Provisional	97.48
PRK05480	209	uridine/cytidine kinase; Provisional	97.46
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.46
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.44
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.43
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.43
PRK06217	183	hypothetical protein; Validated	97.42
PF05729	166	NACHT: NACHT domain	97.41
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.4
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.38
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.38
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.36
PRK14737	186	gmk guanylate kinase; Provisional	97.36
COG1161	322	Predicted GTPases [General function prediction onl	97.36
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.36
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.36
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.36
smart00382	148	AAA ATPases associated with a variety of cellular	97.35
PRK03839	180	putative kinase; Provisional	97.35
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.34
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.33
PRK08233	182	hypothetical protein; Provisional	97.33
PRK14531	183	adenylate kinase; Provisional	97.33
PF00004	132	AAA: ATPase family associated with various cellula	97.33
cd03111	106	CpaE_like This protein family consists of proteins	97.32
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.31
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.31
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.3
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.29
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.28
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.28
PRK14738	206	gmk guanylate kinase; Provisional	97.27
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.26
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.26
PRK13949	169	shikimate kinase; Provisional	97.26
KOG4181	491	consensus Uncharacterized conserved protein [Funct	97.26
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.26
PRK10646	153	ADP-binding protein; Provisional	97.25
PTZ00088	229	adenylate kinase 1; Provisional	97.25
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.25
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.25
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.24
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.24
PRK01889	356	GTPase RsgA; Reviewed	97.24
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.22
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.22
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.22
cd03110	179	Fer4_NifH_child This protein family's function is	97.2
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.19
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.19
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.19
PRK05057	172	aroK shikimate kinase I; Reviewed	97.19
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.19
PRK00300	205	gmk guanylate kinase; Provisional	97.19

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-43  Score=233.17  Aligned_cols=198  Identities=38%  Similarity=0.696  Sum_probs=177.8

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+..-++.+||+++|.+|+|||.|+.+|....|...+..|.+.++..+.+.++++.+.+++|||.||++|+.....++++
T Consensus         2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~   81 (205)
T KOG0084|consen    2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG   81 (205)
T ss_pred             CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc-EEEeec
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETSA  159 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~  159 (206)
                      +|++|+|||+++.++|..+..|+.++.++...    ++|.++|+||+|+.+.  +.+..++.+.|+...+ .+ ++++||
T Consensus        82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSA  154 (205)
T KOG0084|consen   82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSA  154 (205)
T ss_pred             CCeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-Ccceeeccc
Confidence            99999999999999999999999999988765    7899999999999987  8999999999999998 66 999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCCCC---CCccccCCC-CCccCCCCCC
Q 028654          160 KEGFNVEAAFECIAKNALKNEPQEEDY---LPDTIDVGG-GQQQRSSGCE  205 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~c~  205 (206)
                      +++.++++.|..|...+.++.......   .+..+...+ ...+..++||
T Consensus       155 K~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C  204 (205)
T KOG0084|consen  155 KDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCC  204 (205)
T ss_pred             CCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCC
Confidence            999999999999999988776663333   366666666 3456666783

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.1e-42  Score=227.86  Aligned_cols=206  Identities=77%  Similarity=1.185  Sum_probs=184.0

Q ss_pred             Ccc-ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee
Q 028654            1 MAS-RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR   79 (206)
Q Consensus         1 ~~~-~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   79 (206)
                      |+. ++...+||+++|.+|+|||+|+|++...+|...+..+.+.++..+.+.++++.+.+++|||+|+++|.++...+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            555 4577899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      .+|..+++||++++++++.+..|..+++.+.....+...|+||++||+|+.+...++++.+..+.|+...+++||+++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999999999999899999999999999887789999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCCCC---CCCCccccCCCCCccCCCCCCC
Q 028654          160 KEGFNVEAAFECIAKNALKNEPQEE---DYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                      ++..|+.++|+.+.+.++.....+.   .............+..++||.|
T Consensus       161 K~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~~c~c  210 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSSGCEC  210 (210)
T ss_pred             cccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCCCCCC
Confidence            9999999999999999998876411   1133333333334444447767

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-40  Score=219.72  Aligned_cols=194  Identities=43%  Similarity=0.741  Sum_probs=172.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+++|..++|||||+-++..+.|.....+|++.-+..+.+.+.+..++|.||||.|+++|.++..+|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45689999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||+++.+||..+..|..++.+..+.    ++-+.+|+||+|+...  +++..++...++...+ ..|+++||+++.|+
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv  155 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV  155 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence            999999999999999999999887653    6677889999999875  8899999999999987 99999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCC---ccccCCCC-CccCCCCCCC
Q 028654          166 EAAFECIAKNALKNEPQEEDYLP---DTIDVGGG-QQQRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~c~c  206 (206)
                      +++|..|.+.+++...+..+..+   ..+..... .....++|||
T Consensus       156 ~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  156 NEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence            99999999999998888665333   44444433 3445678844

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-38  Score=211.90  Aligned_cols=171  Identities=40%  Similarity=0.625  Sum_probs=158.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+|++++|..++||||||+++....|...+.+|.+.++....+.+.+..+.+++|||.||++|+.+...|++++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||+++..+|+...+|+..+...-   +..+..+++|+||.||.+.  +++..++.+..++..+ ..|+++||+.|.|++
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~---gs~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk  174 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRER---GSDDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK  174 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhcc---CCCceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence            999999999999999999987543   3335678899999999987  8999999999999998 799999999999999


Q ss_pred             HHHHHHHHHHhhcCCCC
Q 028654          167 AAFECIAKNALKNEPQE  183 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~~~  183 (206)
                      .+|..|..++++....+
T Consensus       175 ~lFrrIaa~l~~~~~~~  191 (221)
T KOG0094|consen  175 QLFRRIAAALPGMEVLE  191 (221)
T ss_pred             HHHHHHHHhccCccccc
Confidence            99999999888875543

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=5e-38  Score=222.87  Aligned_cols=195  Identities=36%  Similarity=0.670  Sum_probs=164.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888888888877777777 7889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ||++++++++.+..|+..+..........+.|+++|+||+|+...  +....+++..++...+...++++||++|.|+++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e  158 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE  158 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence            999999999999999988876543333347899999999999753  556778888888887757899999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCC-----CccccCCCCCccCCCCCCC
Q 028654          168 AFECIAKNALKNEPQEEDYL-----PDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       168 l~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~c~c  206 (206)
                      +|++|++.+.+..+..++..     +.........+++++|| |
T Consensus       159 ~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  201 (201)
T cd04107         159 AMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGC-C  201 (201)
T ss_pred             HHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCC-C
Confidence            99999999988766544433     33344445557777799 7

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-36  Score=205.95  Aligned_cols=171  Identities=41%  Similarity=0.727  Sum_probs=162.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      -++.++|+++|.++||||+|+.+|....+...+..+.+.++..+.+..++..+.+++|||.|+++++.+...|++.|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|||+++..+|+++..|+..+..+...    ++|.++|+||+|+...  +++..+..+.++.+++ ..|+++||++|.|
T Consensus        89 ~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~N  161 (207)
T KOG0078|consen   89 LLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNFN  161 (207)
T ss_pred             EEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCCC
Confidence            9999999999999999999999887764    8899999999999875  8999999999999997 9999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      |++.|..+++.+..+.+.
T Consensus       162 I~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  162 IEEAFLSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHHHHHHhhcch
Confidence            999999999999976655

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.4e-36  Score=210.30  Aligned_cols=169  Identities=31%  Similarity=0.566  Sum_probs=151.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999998887777778888887788888888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++.+++.+..|+.++....     ++.|++||+||+|+...  +.+..++++.+++..+ .+++++||++|.|+
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V  155 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI  155 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence            9999999999999999999997654     27899999999999764  5677888999998876 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +++|++|++.+..+...
T Consensus       156 ~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         156 TESFTELARIVLMRHGR  172 (189)
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999988876664

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.4e-36  Score=194.87  Aligned_cols=171  Identities=34%  Similarity=0.610  Sum_probs=159.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||++||.+|+|||+|+-+|....|.+....+.+.++..+.+.+++..+++.||||.|+++|+.+...|++.+.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            45799999999999999999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++.+++|..+..|+.++..+..+.   ++..++|+||+|....  +.++.++...|++..+ ..|+++||++.+++
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V  162 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTRENV  162 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhhccH
Confidence            9999999999999999999998876653   6667899999997654  8899999999999988 88999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +..|+.++.++++.+.-
T Consensus       163 ~~~FeelveKIi~tp~l  179 (209)
T KOG0080|consen  163 QCCFEELVEKIIETPSL  179 (209)
T ss_pred             HHHHHHHHHHHhcCcch
Confidence            99999999999987654

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.6e-35  Score=208.46  Aligned_cols=190  Identities=41%  Similarity=0.664  Sum_probs=156.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +||+++|++|+|||||++++....+.. .+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            489999999999999999999988753 5666776677666778888889999999999999988888899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|++++++++.+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+++++||++|.|+++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~  153 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL  153 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence            9999999999999999888765432    6799999999999753  4455667777777766 7999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCCCC
Q 028654          168 AFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                      +|.+|.+.+.+.....+.........-..+.++.++| |
T Consensus       154 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  191 (191)
T cd04112         154 AFTAVAKELKHRKYEQPDEGKFKISDYVTKQKKISRC-C  191 (191)
T ss_pred             HHHHHHHHHHHhccccCCCCcEEeccccCcccccCCC-C
Confidence            9999999999887654443332333334567788899 7

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.3e-35  Score=209.22  Aligned_cols=165  Identities=38%  Similarity=0.685  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      ++|+++|..|+|||||++++..+.|...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47899999999999999999999998888889888888888889998999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+....    ..+.|+++|+||+|+...  +.+..++.+.++....+..++++||++|.|++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~----~~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~  154 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI  154 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence            9999999999999998776543    237899999999999754  6677788888887764488999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028654          169 FECIAKNALKN  179 (206)
Q Consensus       169 ~~~i~~~~~~~  179 (206)
                      |.++++.+.+.
T Consensus       155 F~~l~~~~~~~  165 (202)
T cd04120         155 FLKLVDDILKK  165 (202)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=2.9e-35  Score=206.98  Aligned_cols=188  Identities=27%  Similarity=0.436  Sum_probs=154.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      +|+++|.+|+|||||+++|..+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999998888777777776544 3455677888899999999999999989999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      +++.++++.+..|+..+...... ...+.|+++|+||+|+...  +....++...++...+ .+++++||++|.|++++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~  155 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF  155 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence            99999999999999888765432 1237899999999999754  4556666777777766 789999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCCCC
Q 028654          170 ECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                      +++++.+.++...+.+    +......++.++++|||
T Consensus       156 ~~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         156 YTLVRALRQQRQGGQG----PKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHHHHhhcccCC----CcCCCCCcccccccCce
Confidence            9999999887777543    24455566777778844

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.7e-34  Score=203.70  Aligned_cols=190  Identities=32%  Similarity=0.587  Sum_probs=155.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +||+++|.+|+|||||+++|.++.+.. .+.++.+..+....+.+.+..+.+.+||++|++.+......++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 5777777777777788888889999999999999888888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--cceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ||++++.+++.+..|+..+....     ++.|+++|+||+|+....  ......+++..++...+ .+++++||+++.|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv  154 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV  154 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            99999999999888988876532     267999999999986432  23445566777777665 78999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCCCC
Q 028654          166 EAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                      +++|++|.+.+.+....+.... ..+.+..+++++.++| |
T Consensus       155 ~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~  193 (193)
T cd04118         155 DELFQKVAEDFVSRANNQMNTE-KGVDLGQKKNSYFYSC-C  193 (193)
T ss_pred             HHHHHHHHHHHHHhcccccCCC-CccccCCcCCCCCCCC-C
Confidence            9999999999987655432222 4555666677788889 7

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=1.7e-34  Score=204.38  Aligned_cols=192  Identities=38%  Similarity=0.650  Sum_probs=157.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35789999999999999999999999888778888887887788888888889999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+.....     ..|+++|+||+|+...  .....++...++...+ .+++++|++++.|+
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi  155 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV  155 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence            99999999999999999998866542     6799999999999754  4456677777777766 88999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCC-CCc---cccCCCCCccCCCCCCC
Q 028654          166 EAAFECIAKNALKNEPQEEDY-LPD---TIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~c~c  206 (206)
                      +++|++|.+.+++........ ...   .....++...+++-| |
T Consensus       156 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  199 (199)
T cd04110         156 EEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRC-C  199 (199)
T ss_pred             HHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccC-C
Confidence            999999999998765542211 111   222233334667778 6

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.5e-34  Score=206.96  Aligned_cols=167  Identities=35%  Similarity=0.539  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-eEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+|||+|++.+......+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888889988888777777754 578999999999999888899999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ||++++++++.+..|...+....... ..+.|+++|+||+|+...  +.+..++...++...+ .+++++||++|+|+++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~  156 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL  156 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            99999999999999999988765432 235689999999999754  5677778888888776 7899999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028654          168 AFECIAKNALKN  179 (206)
Q Consensus       168 l~~~i~~~~~~~  179 (206)
                      +|++|++.+...
T Consensus       157 lf~~l~~~l~~~  168 (215)
T cd04109         157 LFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=2.6e-34  Score=205.59  Aligned_cols=166  Identities=39%  Similarity=0.699  Sum_probs=146.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            35789999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v  162 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSALEATNV  162 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988876543    27899999999999754  5566677777777665 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028654          166 EAAFECIAKNALK  178 (206)
Q Consensus       166 ~~l~~~i~~~~~~  178 (206)
                      +++|++|++.+.+
T Consensus       163 ~~lf~~l~~~i~~  175 (216)
T PLN03110        163 EKAFQTILLEIYH  175 (216)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998866

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-35  Score=195.74  Aligned_cols=171  Identities=37%  Similarity=0.661  Sum_probs=159.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ..+.+|++++|..|+|||+|+.+|+.++|.+.+..|.+.++....+.++++.+++++|||.|++.+++....|++.+-++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      |+|||++.+++|..+..|+..+..+...    |..+++++||+|+...  +.++.|+.+.|+++.+ ..+.++||+++.|
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~----NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~~  155 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNE----NMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAEN  155 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCC----CcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhhh
Confidence            9999999999999999999999877533    7789999999999877  7899999999999977 8888999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      +++.|..+...+++.-+.
T Consensus       156 VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  156 VEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988776544

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3.4e-34  Score=204.13  Aligned_cols=180  Identities=33%  Similarity=0.610  Sum_probs=151.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+ .+..+.+.+|||||++.+......+++.+|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888777788877777777766 4667899999999999999888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||++++++++.+..|+..+......   ...|+++|+||+|+...  ..+..++...+++..+ .+++++||+++.|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~  155 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE  155 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence            99999999999999999988765432   25678999999999764  5667778888888877 899999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCC-CCCCccccC
Q 028654          167 AAFECIAKNALKNEPQEE-DYLPDTIDV  193 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~~~~-~~~~~~~~~  193 (206)
                      ++|++|++.+.+....++ ..+-.++.+
T Consensus       156 e~f~~l~~~~~~~~~~~~~~~~~~~~~~  183 (211)
T cd04111         156 EAFELLTQEIYERIKRGELCALDGWDGV  183 (211)
T ss_pred             HHHHHHHHHHHHHhhcCCCCcccccccc
Confidence            999999998887755443 333334333

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.4e-34  Score=206.09  Aligned_cols=187  Identities=36%  Similarity=0.614  Sum_probs=147.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||+++|..+.+.. ..++.+..+.....    ..+.+.+|||+|++.+......+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998764 45666555543332    4578999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-----------------CcceecHHHHHHHHHHcCC
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----------------~~~~~~~~~~~~~~~~~~~  151 (206)
                      |++++++++.+..|+..+....    ..+.|+++|+||+|+...                 ..+.+..++...++.+.+.
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~----~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~  151 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTA----NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK  151 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence            9999999999988888776542    236899999999999751                 1367788899999887652


Q ss_pred             -------------CcEEEeeccCCCCHHHHHHHHHHHHhhcCCC---CCCCCCccccCCCCCccCCCCCCC
Q 028654          152 -------------IPYFETSAKEGFNVEAAFECIAKNALKNEPQ---EEDYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       152 -------------~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                                   .+|+++||++|.|++++|..+++.+++...+   +.+.+...|+.+. .+.+|++| |
T Consensus       152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~  220 (220)
T cd04126         152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPN-PKRSKSKC-C  220 (220)
T ss_pred             cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCC-cccCCCCC-C
Confidence                         5799999999999999999999877654433   2222333444433 36678899 7

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2.4e-34  Score=198.96  Aligned_cols=164  Identities=32%  Similarity=0.562  Sum_probs=142.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||+|+.++..+.|...+.++.+..+ ...+.+++..+.+.+|||+|++++......+++.+|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888888887655 455677888999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--------cceecHHHHHHHHHHcCCCcEEEeec
Q 028654           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      |++++++++.+ ..|+..+....     .+.|+++|+||+|+.+..        .+.+..++...++...+..+|+++||
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  155 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS  155 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence            99999999998 68999886653     268999999999996532        13477888899998887447999999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 028654          160 KEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~  178 (206)
                      ++|.|++++|+.+++.+.+
T Consensus       156 k~~~nV~~~F~~~~~~~~~  174 (176)
T cd04133         156 KTQQNVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CcccCHHHHHHHHHHHHhc
Confidence            9999999999999997643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-35  Score=197.08  Aligned_cols=169  Identities=37%  Similarity=0.674  Sum_probs=158.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      -++.+||+++|.+++|||-|+.+|....|.....+|.+.++....+.++++.++.+||||.|+++|+.....+++.+.++
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA   90 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   90 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|||++...+|+.+.+|+.++..+...    ++++++|+||+||.+.  +.+..++.+.++...+ ..|+++||.+..+
T Consensus        91 llVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~tN  163 (222)
T KOG0087|consen   91 LLVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDATN  163 (222)
T ss_pred             EEEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEeccccccc
Confidence            9999999999999999999999887654    8999999999999875  8899999999999887 9999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 028654          165 VEAAFECIAKNALKNE  180 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~  180 (206)
                      ++++|..++..+++..
T Consensus       164 Ve~aF~~~l~~I~~~v  179 (222)
T KOG0087|consen  164 VEKAFERVLTEIYKIV  179 (222)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988776543

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.4e-34  Score=200.08  Aligned_cols=167  Identities=22%  Similarity=0.453  Sum_probs=146.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++.+|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4578999999999999999999999999888888887655 456778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|||++++.+++.+ ..|...+.....     +.|+++|+||+|+...          ..+.+..++++++++..+..+|
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~  156 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY  156 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence            99999999999997 789988876542     6799999999998642          1246888999999999885689


Q ss_pred             EEeeccCCCC-HHHHHHHHHHHHhh
Q 028654          155 FETSAKEGFN-VEAAFECIAKNALK  178 (206)
Q Consensus       155 ~~~s~~~~~~-i~~l~~~i~~~~~~  178 (206)
                      +++||+++.| ++++|..+++.++.
T Consensus       157 ~E~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         157 IECSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             EECCcCCCCCCHHHHHHHHHHHHhc
Confidence            9999999998 99999999997653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.6e-34  Score=196.47  Aligned_cols=164  Identities=37%  Similarity=0.663  Sum_probs=144.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988887777877777777778888889999999999999998889999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ||++++++++.+..|+..+.....    ++.|+++|+||+|+...  +....++...++...+ .+++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e  154 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED  154 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            999999999999999988765432    26799999999999765  5566778888887765 7999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028654          168 AFECIAKNALK  178 (206)
Q Consensus       168 l~~~i~~~~~~  178 (206)
                      +|.++++.+.+
T Consensus       155 ~f~~l~~~~~~  165 (166)
T cd04122         155 AFLETAKKIYQ  165 (166)
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=4.2e-34  Score=200.88  Aligned_cols=169  Identities=31%  Similarity=0.556  Sum_probs=144.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..+||+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+|||||++++...+..+++.+|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4469999999999999999999999888777777776555 566677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++++++.+..|...+.....   ..+.|+++|+||+|+.+.  ..+..++...++...+ .+++++||+++.|+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi  155 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNV  155 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCH
Confidence            99999999999999999988876533   237899999999998654  4455666777776665 78999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|.+|++.+.+..+
T Consensus       156 ~~~~~~l~~~l~~~~~  171 (189)
T PTZ00369        156 DEAFYELVREIRKYLK  171 (189)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887644

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.6e-35  Score=188.26  Aligned_cols=166  Identities=45%  Similarity=0.766  Sum_probs=155.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++.+++|.+|+|||+|+-+|....|..+|..+++.++..+.+.+.+..+.++|||+.|++.|+.+...+++..+++|+
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||+++.++|.+..+|++++...+.     ..|-++|+||.|.++-  +.+..++...|+...+ +.+|++|++++.+++
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE  158 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENVE  158 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccch
Confidence            9999999999999999999988765     7789999999999876  7889999999999998 999999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 028654          167 AAFECIAKNALKNE  180 (206)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (206)
                      ..|.-|.+.++...
T Consensus       159 ~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  159 AMFHCITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998776654

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.1e-33  Score=198.73  Aligned_cols=167  Identities=46%  Similarity=0.748  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999887777888888787777888888899999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |+++++++..+..|+..+......    +.|+++|+||+|+.+.  .....++...++...+ .+++++||+++.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~----~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~  153 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARE----NVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA  153 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            999999999999999988765432    5789999999998754  4556677777777665 68999999999999999


Q ss_pred             HHHHHHHHhhcCCC
Q 028654          169 FECIAKNALKNEPQ  182 (206)
Q Consensus       169 ~~~i~~~~~~~~~~  182 (206)
                      |.++++.+.++...
T Consensus       154 f~~l~~~~~~~~~~  167 (188)
T cd04125         154 FILLVKLIIKRLEE  167 (188)
T ss_pred             HHHHHHHHHHHhhc
Confidence            99999999876543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=7.6e-34  Score=199.72  Aligned_cols=165  Identities=24%  Similarity=0.507  Sum_probs=141.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999998888888886554 44566788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEE
Q 028654           88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ||++++.+++.+. .|...+....     ++.|+++|+||.|+.+...          ..+..++.+.++...+..++++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e  156 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE  156 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence            9999999999996 5877675432     2789999999999965421          2356677888888877578999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhh
Q 028654          157 TSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      +||++|.|++++|.++++.+..
T Consensus       157 ~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         157 CSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             eCCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=8e-34  Score=195.89  Aligned_cols=165  Identities=42%  Similarity=0.739  Sum_probs=145.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999988888888888877788888888999999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++++++..+..|+..+.....    .+.|+++|+||+|+.+.  +....++...++...+ .+++++||+++.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  154 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE  154 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999999998876532    37899999999999864  4556677777777766 789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|+++.+.+..
T Consensus       155 ~~~~~i~~~~~~  166 (167)
T cd01867         155 EAFFTLAKDIKK  166 (167)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=9.7e-34  Score=196.69  Aligned_cols=163  Identities=23%  Similarity=0.448  Sum_probs=142.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......+++.+|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6899999999999999999999998888888886655 456778888999999999999999998999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+ ..|...+.....     +.|+++|+||+|+.+.          ..+.+..++.+++++..+..+|+++
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~-----~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  155 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCP-----NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC  155 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCC-----CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence            99999999996 789988876542     6799999999999642          1245788899999999885589999


Q ss_pred             eccCCCC-HHHHHHHHHHHHh
Q 028654          158 SAKEGFN-VEAAFECIAKNAL  177 (206)
Q Consensus       158 s~~~~~~-i~~l~~~i~~~~~  177 (206)
                      ||++|++ ++++|..++++++
T Consensus       156 SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         156 SAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             ccCcCCcCHHHHHHHHHHHHh
Confidence            9999995 9999999999765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=188.24  Aligned_cols=195  Identities=35%  Similarity=0.657  Sum_probs=167.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      .+.+++++||.+-+|||+|++.+..+.+.....||.+.++....++. .+..+++++|||.|++.+++....|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            36799999999999999999999999999999999999888777766 46778999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      ++|||+++.++|+.+..|+.+...+..  + |..+ +.+|++|+|+...  +++..|+.+.++...+ ..|+++|+++|.
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q--~-P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g~  159 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQ--G-PDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNGC  159 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcC--C-CCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCCC
Confidence            999999999999999999999876654  2 3444 5699999999966  9999999999999998 999999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCCC-----------CCCCccccCCCCCccCCCCCCC
Q 028654          164 NVEAAFECIAKNALKNEPQEE-----------DYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                      |+++.|..|.+.+...-.+++           ...|..+.-.....+..+.|+|
T Consensus       160 NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  160 NVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             cHHHHHHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            999999999987755444311           1345555556666778888878

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.6e-33  Score=201.68  Aligned_cols=168  Identities=21%  Similarity=0.409  Sum_probs=146.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+++|.+|+|||+|+++|..+.|...+.++.+..+. ..+.+++..+.+.||||+|++.+......+++.+|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45789999999999999999999999998888888876664 45778889999999999999999998999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|||+++++++..+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..++.+.+++..+...|
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~  164 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY  164 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence            99999999999984 789998876542     6799999999998642          1256788899999999884479


Q ss_pred             EEeeccCCC-CHHHHHHHHHHHHhhc
Q 028654          155 FETSAKEGF-NVEAAFECIAKNALKN  179 (206)
Q Consensus       155 ~~~s~~~~~-~i~~l~~~i~~~~~~~  179 (206)
                      ++|||++|. |++++|..++..+++.
T Consensus       165 ~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         165 LECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            999999997 8999999999988775

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.4e-33  Score=195.19  Aligned_cols=167  Identities=25%  Similarity=0.490  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999988877778876544 44567788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ||++++.++..+..|...+.....   ..+.|+++|+||+|+...  +.+..++...+++..+ ++++++||++|.|+++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~  154 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRL---TEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD  154 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence            999999999999888877765432   237899999999998754  5677778888887776 8999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 028654          168 AFECIAKNALKNEP  181 (206)
Q Consensus       168 l~~~i~~~~~~~~~  181 (206)
                      +|+++++.+.+...
T Consensus       155 ~f~~l~~~~~~~~~  168 (172)
T cd04141         155 AFHGLVREIRRKES  168 (172)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998887444

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.2e-33  Score=194.24  Aligned_cols=168  Identities=56%  Similarity=1.006  Sum_probs=147.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ++..+||+++|++|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999888877777877777777788889999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|||++++++++.+..|...+..........+.|+++|+||+|+..   +....+++.+++...+..+++++||+++.|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  158 (170)
T cd04116          82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATN  158 (170)
T ss_pred             EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence            99999999999999999999887765544445789999999999863   556778888888887756899999999999


Q ss_pred             HHHHHHHHHHH
Q 028654          165 VEAAFECIAKN  175 (206)
Q Consensus       165 i~~l~~~i~~~  175 (206)
                      ++++|+++++.
T Consensus       159 v~~~~~~~~~~  169 (170)
T cd04116         159 VAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-34  Score=185.81  Aligned_cols=175  Identities=38%  Similarity=0.630  Sum_probs=161.7

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+..-++.+|++++|+.|+|||.|+++|....+.+...++.+.++..+.+.+.++.++++||||.|++.|++..+.|++.
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            45556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +-+.++|||+++++++..+..|+.....++..    ++-+++++||.|+.+.  +++...+...|+++.. ..+.++|++
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~  154 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSAL  154 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeeccc
Confidence            99999999999999999999999998776654    8889999999999877  8999999999999887 789999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +|+++++.|-...+.++.+-+.
T Consensus       155 TGeNVEEaFl~c~~tIl~kIE~  176 (214)
T KOG0086|consen  155 TGENVEEAFLKCARTILNKIES  176 (214)
T ss_pred             ccccHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988776554

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=3.8e-33  Score=194.49  Aligned_cols=168  Identities=24%  Similarity=0.451  Sum_probs=142.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|..|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999988888899888888788888888999999999999999998999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC---cceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      |+++++++..+..|+..+.....    ...| ++|+||+|+....   ......++...++...+ .+++++||++|.|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v  154 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV  154 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999998876532    1456 6789999996321   11123456667777776 88999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +++|+++++.+.+-+..
T Consensus       155 ~~lf~~l~~~l~~~~~~  171 (182)
T cd04128         155 QKIFKIVLAKAFDLPLT  171 (182)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999875554

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=3.1e-33  Score=195.24  Aligned_cols=167  Identities=46%  Similarity=0.724  Sum_probs=143.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------CeEEEEEEeeCCCcccccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~   76 (206)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+.          +..+.+.+||+||++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56899999999999999999999999888888888877766666554          45688999999999999999999


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|||+++++++..+..|+..+.....   .++.|+++|+||+|+.+.  +....++...++...+ .++++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e  156 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE  156 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence            99999999999999999999999999998876532   236789999999999764  4566677888888876 78999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhc
Q 028654          157 TSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +||+++.|++++|++|.+.+.++
T Consensus       157 ~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         157 TSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999987653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=6.2e-33  Score=197.73  Aligned_cols=167  Identities=20%  Similarity=0.435  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+|+|.+|+|||+|+++|..+.+...+.|+.+..+. ..+.+++..+.+.||||+|++.+......+++.+|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            68999999999999999999999998888898876654 56778889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+ ..|...+....     ++.|+++|+||+|+....          ...+..++...+++..+..+|+++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~  155 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC  155 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence            99999999998 45665554432     278999999999996531          123677888999999886799999


Q ss_pred             eccCCC-CHHHHHHHHHHHHhhcCC
Q 028654          158 SAKEGF-NVEAAFECIAKNALKNEP  181 (206)
Q Consensus       158 s~~~~~-~i~~l~~~i~~~~~~~~~  181 (206)
                      ||+++. |++++|+.+..+++....
T Consensus       156 SAk~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         156 SSRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHhccC
Confidence            999988 499999999998877544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=2.7e-33  Score=194.30  Aligned_cols=162  Identities=25%  Similarity=0.471  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||++++..+.+...+.|+.+..+. ..+.+.+..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            68999999999999999999999988888888866553 45667888899999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|...+....     ++.|+++|+||+|+....          .+.+..++.+.+++..+...++++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~  155 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC  155 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence            999999999986 5887776543     268999999999986531          245677788888887776789999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~  176 (206)
                      ||++|.|++++|+.+++++
T Consensus       156 SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         156 SALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=5.3e-33  Score=191.40  Aligned_cols=163  Identities=37%  Similarity=0.687  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988777888777776666667777889999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |.+++++++.+..|+..+.....    .+.|+++|+||+|+.+.  +....++...++...+ .+++++||+++.|++++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  154 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999998865432    26799999999999764  4455667777777665 78999999999999999


Q ss_pred             HHHHHHHHhh
Q 028654          169 FECIAKNALK  178 (206)
Q Consensus       169 ~~~i~~~~~~  178 (206)
                      |+++++.+.+
T Consensus       155 ~~~l~~~~~~  164 (165)
T cd01865         155 FERLVDIICD  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=4.9e-33  Score=191.79  Aligned_cols=164  Identities=41%  Similarity=0.753  Sum_probs=144.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999999988877788888788778888888889999999999999988888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|+++++++..+..|+..+.....    ++.|+++|+||+|+...  .....++...++...+ .+++++|+++|.|+++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  154 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ  154 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence            999999999999999998876542    26799999999998764  4566677778877766 7999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028654          168 AFECIAKNALK  178 (206)
Q Consensus       168 l~~~i~~~~~~  178 (206)
                      +|.+|.+.+.+
T Consensus       155 ~~~~i~~~~~~  165 (166)
T cd01869         155 AFMTMAREIKK  165 (166)
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3.8e-33  Score=195.90  Aligned_cols=169  Identities=33%  Similarity=0.551  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +||+++|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+......+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            489999999999999999999998887777777665543 34454 6778999999999999988888899999999999


Q ss_pred             EECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--cceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ||++++++++.+. .|+..+....     ++.|+++|+||.|+....  ...+..++..+++...+..+++++||++|.|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            9999999999885 5777665432     278999999999986532  2345677888888887744899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCC
Q 028654          165 VEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~~  183 (206)
                      ++++|..+++.+.......
T Consensus       155 v~~~f~~l~~~~~~~~~~~  173 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKA  173 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhh
Confidence            9999999999998876654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.3e-33  Score=198.63  Aligned_cols=165  Identities=30%  Similarity=0.598  Sum_probs=142.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..+||+++|.+|+|||||++++..+.+...+.++.+.++....+...+..+.+.+|||+|++.+...+..+++.+|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            56799999999999999999999999888888899888887777777777899999999999999998889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||+++++++..+..|+..+....     ++.|+++|+||+|+..   +.+..+.+ .+....+ .+++++||++|.|+
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~---~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i  160 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAKQV-TFHRKKN-LQYYEISAKSNYNF  160 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhh---ccCCHHHH-HHHHhcC-CEEEEcCCCCCCCH
Confidence            9999999999999999999987653     2789999999999864   23334444 5555544 78999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      +++|.+|++.+.+..
T Consensus       161 ~~~f~~l~~~~~~~~  175 (219)
T PLN03071        161 EKPFLYLARKLAGDP  175 (219)
T ss_pred             HHHHHHHHHHHHcCc
Confidence            999999999997653

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=5.5e-33  Score=191.81  Aligned_cols=167  Identities=34%  Similarity=0.640  Sum_probs=145.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+.+.+..+.+.+|||||++.+......+++.+|++|+|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888888888888888888888999999999999988888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCC-CCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASP-SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      |++++.++..+..|+..+...... ....+.|+++|+||+|+...  .....++...++...+ .+++++||+++.|+++
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  157 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE  157 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence            999999999999999998876542 11236899999999999743  4556777777777766 8899999999999999


Q ss_pred             HHHHHHHHHhh
Q 028654          168 AFECIAKNALK  178 (206)
Q Consensus       168 l~~~i~~~~~~  178 (206)
                      +|++|++.+++
T Consensus       158 l~~~l~~~l~~  168 (168)
T cd04119         158 MFQTLFSSIVD  168 (168)
T ss_pred             HHHHHHHHHhC
Confidence            99999988753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=5.3e-33  Score=190.59  Aligned_cols=160  Identities=33%  Similarity=0.622  Sum_probs=141.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      ++|+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999988888888888887788888888899999999999999988888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....    .+.|+++|+||.|+...  +.+..++...+++..+ .+++++||++|.|++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~  153 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            99999999999999998876532    26899999999999754  5566778888887776 88999999999999999


Q ss_pred             HHHHHHH
Q 028654          169 FECIAKN  175 (206)
Q Consensus       169 ~~~i~~~  175 (206)
                      |.+|.+.
T Consensus       154 f~~l~~~  160 (161)
T cd04117         154 FTRLTEL  160 (161)
T ss_pred             HHHHHhh
Confidence            9999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=195.87  Aligned_cols=168  Identities=37%  Similarity=0.660  Sum_probs=146.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988887777888888877788888888899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++++++..+..|+..+.....    ++.|+++|+||+|+...  +....++.+.+++..+ .+++++|++++.|++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~  157 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVE  157 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999899887765432    37899999999999764  4567788888888776 789999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 028654          167 AAFECIAKNALKNEP  181 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (206)
                      ++|.++++.++++..
T Consensus       158 e~f~~l~~~~~~~~~  172 (210)
T PLN03108        158 EAFIKTAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999987543

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=6.6e-33  Score=190.97  Aligned_cols=163  Identities=38%  Similarity=0.650  Sum_probs=141.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999988877777787777777778888888899999999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....+....+++..+...++++|+++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  155 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGA----SNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE  155 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence            9999999999999999998876432    37899999999999765  45666777788887765679999999999999


Q ss_pred             HHHHHHHHH
Q 028654          167 AAFECIAKN  175 (206)
Q Consensus       167 ~l~~~i~~~  175 (206)
                      ++|+++.+.
T Consensus       156 ~~~~~l~~~  164 (165)
T cd01864         156 EAFLLMATE  164 (165)
T ss_pred             HHHHHHHHh
Confidence            999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=8.8e-33  Score=190.90  Aligned_cols=165  Identities=35%  Similarity=0.613  Sum_probs=141.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|.+|||||||++++.++.+...+.++.+.++....+.+.+..+.+.+|||||++++......+++.+|++++|+|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            78999999999999999999999988888998888877888888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      +++++++..+..|+..+......   .+.|+++|+||+|+..........++...++...+ .+++++||+++.|++++|
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf  157 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF  157 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence            99999999999999988654322   24689999999998654323334556666766665 689999999999999999


Q ss_pred             HHHHHHHhh
Q 028654          170 ECIAKNALK  178 (206)
Q Consensus       170 ~~i~~~~~~  178 (206)
                      +.|++.+.+
T Consensus       158 ~~l~~~~~~  166 (170)
T cd04108         158 FRVAALTFE  166 (170)
T ss_pred             HHHHHHHHH
Confidence            999998865

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=180.18  Aligned_cols=169  Identities=36%  Similarity=0.674  Sum_probs=155.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++.+|++++|...+|||+|+.++.+..|...+.++.+.++..+.+--..+.+.+++|||.|++.++.....+++.++++|
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi   98 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI   98 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence            35679999999999999999999999999999999999999998877778899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||+++.+++..++.|...+.-+..    .+.|+|+|+||+|+...  +.++.|....++...+ ..|+++||+.+.++
T Consensus        99 LmyDitNeeSf~svqdw~tqIktysw----~naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV  171 (193)
T KOG0093|consen   99 LMYDITNEESFNSVQDWITQIKTYSW----DNAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV  171 (193)
T ss_pred             EEEecCCHHHHHHHHHHHHHheeeec----cCceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence            99999999999999999998866543    48999999999999876  8999999999999999 79999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|+.++..+-+...
T Consensus       172 k~~Fe~lv~~Ic~kms  187 (193)
T KOG0093|consen  172 KQVFERLVDIICDKMS  187 (193)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998766544

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.1e-32  Score=189.85  Aligned_cols=163  Identities=39%  Similarity=0.736  Sum_probs=143.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|++|||||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+......+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35799999999999999999999998887888888888888888888888899999999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  154 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVE  154 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence            99999999999999999988766432    6799999999999764  5566777777777654 789999999999999


Q ss_pred             HHHHHHHHHH
Q 028654          167 AAFECIAKNA  176 (206)
Q Consensus       167 ~l~~~i~~~~  176 (206)
                      ++|++|.+.+
T Consensus       155 ~l~~~l~~~i  164 (165)
T cd01868         155 EAFKQLLTEI  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1e-32  Score=189.60  Aligned_cols=161  Identities=36%  Similarity=0.632  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777777765 444566778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|...+.....   ..+.|+++|+||+|+.+.  +....++...+....+ .+++++||+++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  154 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKD---TENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV  154 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence            99999999999999888876532   237899999999999754  4566667777777766 89999999999999999


Q ss_pred             HHHHHHHH
Q 028654          169 FECIAKNA  176 (206)
Q Consensus       169 ~~~i~~~~  176 (206)
                      |++|.+.+
T Consensus       155 ~~~l~~~~  162 (163)
T cd04136         155 FADLVRQI  162 (163)
T ss_pred             HHHHHHhc
Confidence            99998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.5e-32  Score=188.95  Aligned_cols=163  Identities=31%  Similarity=0.575  Sum_probs=138.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      ++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887776777765544 45667788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ||.++..+++.+..|+..+.....   ..+.|+++|+||+|+.+.  .....++...++...+ .+++++||+++.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE  153 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence            999999999999999888876532   237899999999999764  4456666777777666 7999999999999999


Q ss_pred             HHHHHHHHHh
Q 028654          168 AFECIAKNAL  177 (206)
Q Consensus       168 l~~~i~~~~~  177 (206)
                      +|.+|.+.+-
T Consensus       154 ~~~~l~~~l~  163 (164)
T cd04175         154 IFYDLVRQIN  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2e-32  Score=192.27  Aligned_cols=166  Identities=30%  Similarity=0.492  Sum_probs=138.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+......++..+|++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            799999999999999999999988877777776554 3455667778899999999999998888889999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEEee
Q 028654           90 VNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ++++++++.+. .|+..+....     ++.|+++|+||+|+.....          ..+..++...++...+.++++++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  155 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS  155 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence            99999999885 5888776543     2789999999999975421          124556667777777667899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCC
Q 028654          159 AKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      |++|.|++++|.+|++.++...+
T Consensus       156 Ak~~~~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         156 AKLNRGVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CCcCCCHHHHHHHHHHHHhcccc
Confidence            99999999999999998875443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=182.39  Aligned_cols=171  Identities=37%  Similarity=0.669  Sum_probs=158.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      +...||++++|..=+|||+|+-+++...|......+....+..+.+.+.+....+.||||.|++.|..+...|++.++++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45689999999999999999999999999988888888888889999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|||++++++|+.+..|..++..+...    .+.++||+||+|+...  ++++.++.+.++...+ ..++++||+++.|
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G  162 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG  162 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence            9999999999999999999999888764    5678999999999876  8899999999999998 8899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      +.++|+.+....++...+
T Consensus       163 i~elFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  163 ISELFESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999988887644

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=3.5e-32  Score=187.83  Aligned_cols=165  Identities=38%  Similarity=0.687  Sum_probs=144.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+.+.....+...+....+.+||+||++++......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999998877777887788877888888888899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+.....    ++.|+++|+||.|+...  .....++...++...+ ..++++|++++.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~  155 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSN----SNMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNVE  155 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999999998876532    37899999999999754  4566777777777765 889999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|.++.+.+.+
T Consensus       156 ~~~~~~~~~~~~  167 (168)
T cd01866         156 EAFINTAKEIYE  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=5e-32  Score=187.78  Aligned_cols=170  Identities=81%  Similarity=1.265  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777777777777777888888899999999999988888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|...+..........++|+++|+||+|+..+  .....++...+....+..+++++|+++|.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l  158 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA  158 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence            99999999888889888777665554557899999999999753  4455667777777776689999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 028654          169 FECIAKNALKNE  180 (206)
Q Consensus       169 ~~~i~~~~~~~~  180 (206)
                      +++|.+.+.+..
T Consensus       159 ~~~i~~~~~~~~  170 (172)
T cd01862         159 FETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988763

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=4.2e-32  Score=186.14  Aligned_cols=161  Identities=33%  Similarity=0.615  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||++++....+...+.++.+.+.......+++..+.+.+|||+|++.+...+..+++.+|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777777666666667777888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++.++..+..|+..+.....     +.|+++|+||+|+...    . .++...++...+ .+++++||+++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~p~ivv~nK~Dl~~~----~-~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  149 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-----EIPCIVVANKIDLDPS----V-TQKKFNFAEKHN-LPLYYVSAADGTNVVKL  149 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEECccCchh----H-HHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            99999999999999988866432     6799999999998532    1 233444555554 78999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 028654          169 FECIAKNALKNE  180 (206)
Q Consensus       169 ~~~i~~~~~~~~  180 (206)
                      |+.+++.+++++
T Consensus       150 ~~~l~~~~~~~~  161 (161)
T cd04124         150 FQDAIKLAVSYK  161 (161)
T ss_pred             HHHHHHHHHhcC
Confidence            999999888753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=3.1e-32  Score=188.81  Aligned_cols=161  Identities=25%  Similarity=0.475  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||+.++..+.+...+.++.+. .....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            68999999999999999999999888888887753 33455667888899999999999999988899999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |+++++++..+. .|+..+....     ++.|+++|+||+|+.+..          ...+..++...++...+..+++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  155 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  155 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999985 6877775542     278999999999996431          134677888889888876699999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~  175 (206)
                      ||++|.|++++|+.+++.
T Consensus       156 Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         156 SALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cccccCCHHHHHHHHHHh
Confidence            999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-33  Score=179.49  Aligned_cols=166  Identities=37%  Similarity=0.633  Sum_probs=152.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|..|+|||.|+++|..+-|++....+.+.++..+.+.+++..+++++|||.|+++|++....|++.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      +||++...+|+.+..|+.++..++..    ++--|+|+||+|+.+.  +.+.....++|..... ..|.++||++-++++
T Consensus        86 vydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~nve  158 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEADNVE  158 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchhhHH
Confidence            99999999999999999999998764    5556899999999765  6777888888887754 778999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028654          167 AAFECIAKNALKN  179 (206)
Q Consensus       167 ~l~~~i~~~~~~~  179 (206)
                      .||..+.-.+...
T Consensus       159 ~lf~~~a~rli~~  171 (213)
T KOG0095|consen  159 KLFLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988776543

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=3.9e-32  Score=191.55  Aligned_cols=173  Identities=24%  Similarity=0.398  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccceec
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYRG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~~   80 (206)
                      +||+++|.+|+|||||++++.++.+...+.++.+.+.+...+.+++..+.+.+|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999988778888876666666777888899999999996543221        2234688


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|||++++++++.+..|...+...... ...++|+++|+||+|+...  +....+++..++....+++|+++||+
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak  157 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK  157 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence            99999999999999999999998888765421 1237899999999999754  44566666666554445899999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQEE  184 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~~~  184 (206)
                      +|.|++++|+.+++.+..+.+...
T Consensus       158 ~g~~v~~lf~~i~~~~~~~~~~~~  181 (198)
T cd04142         158 YNWHILLLFKELLISATTRGRSTH  181 (198)
T ss_pred             CCCCHHHHHHHHHHHhhccCCCcc
Confidence            999999999999999987766533

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=9.4e-32  Score=192.05  Aligned_cols=171  Identities=35%  Similarity=0.609  Sum_probs=140.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....+||+++|.+|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            345789999999999999999999988764 5567777777777777888888999999999999998889999999999


Q ss_pred             EEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           85 VLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      ++|+|.++++++..+.. |...+.....   ..+.|+++|+||+|+...  .....++...++...+ ..++++||+++.
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~~  163 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTRE  163 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            99999999999999865 5444433322   125789999999999764  4455666667776665 789999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCC
Q 028654          164 NVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~~  182 (206)
                      |++++|++|.+.+.+.+..
T Consensus       164 ~v~~l~~~l~~~~~~~~~~  182 (211)
T PLN03118        164 NVEQCFEELALKIMEVPSL  182 (211)
T ss_pred             CHHHHHHHHHHHHHhhhhh
Confidence            9999999999999876543

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=5.2e-32  Score=186.45  Aligned_cols=162  Identities=31%  Similarity=0.663  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+......++..+|++|+|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777888877777777777778899999999999998888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....     +.|+++|+||+|+...   .... ....+.... ..+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~~-~~~~~~~~~-~~~~~e~Sa~~~~~v~~~  150 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVKA-KQITFHRKK-NLQYYEISAKSNYNFEKP  150 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCCH-HHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence            99999999999999999887653     7899999999999732   2222 233444443 488999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 028654          169 FECIAKNALKNE  180 (206)
Q Consensus       169 ~~~i~~~~~~~~  180 (206)
                      |++|.+.+.+.+
T Consensus       151 f~~l~~~~~~~~  162 (166)
T cd00877         151 FLWLARKLLGNP  162 (166)
T ss_pred             HHHHHHHHHhcc
Confidence            999999987643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=3.5e-32  Score=186.82  Aligned_cols=159  Identities=37%  Similarity=0.746  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC--CeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +||+++|.+|+|||||++++.++.+...+.++.+.++....+.+.  +..+.+.+|||||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999998887778888877766667666  777899999999999999989999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++++++..+..|+..+.....     +.|+++|+||+|+...  ..+..++...++...+ .+++++|++++.|++
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-----~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  152 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-----DIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT  152 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence            9999999999999999988865432     7899999999999754  4456677777887776 799999999999999


Q ss_pred             HHHHHHHHH
Q 028654          167 AAFECIAKN  175 (206)
Q Consensus       167 ~l~~~i~~~  175 (206)
                      ++|++|.+.
T Consensus       153 ~l~~~l~~~  161 (162)
T cd04106         153 ELFEYLAEK  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.3e-32  Score=186.92  Aligned_cols=161  Identities=45%  Similarity=0.798  Sum_probs=149.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|+.+||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......++..+|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998999998889999999999999999999999999998888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      ++++++++.+..|+..+.....    .+.|+++|+||.|+...  +.+..++++.++...+ .+|+++|++++.|+.++|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f  153 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF  153 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred             cccccccccccccccccccccc----ccccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence            9999999999999999988876    26799999999998863  6788889999999988 999999999999999999


Q ss_pred             HHHHHHHh
Q 028654          170 ECIAKNAL  177 (206)
Q Consensus       170 ~~i~~~~~  177 (206)
                      ..+++.+.
T Consensus       154 ~~~i~~i~  161 (162)
T PF00071_consen  154 QELIRKIL  161 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.9e-32  Score=185.72  Aligned_cols=163  Identities=35%  Similarity=0.618  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            48999999999999999999998887776676653 33456667788889999999999999988889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|...+......   .+.|+++|+||+|+...  +....+....++...+ .+++++||+++.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~---~~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l  153 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDR---DDVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence            999999999999988887665432   26799999999999764  4556677777777766 89999999999999999


Q ss_pred             HHHHHHHHhh
Q 028654          169 FECIAKNALK  178 (206)
Q Consensus       169 ~~~i~~~~~~  178 (206)
                      |++|++.+.+
T Consensus       154 ~~~l~~~~~~  163 (164)
T smart00173      154 FYDLVREIRK  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=5e-32  Score=185.87  Aligned_cols=160  Identities=40%  Similarity=0.666  Sum_probs=141.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777888877777777888888889999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |+++++++..+..|+..+.....    ++.|+++|+||+|+...  .....++...++...+ ..++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~  153 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA  153 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence            99999999999999888765432    37899999999999764  5566778888888777 89999999999999999


Q ss_pred             HHHHHHH
Q 028654          169 FECIAKN  175 (206)
Q Consensus       169 ~~~i~~~  175 (206)
                      |+++++.
T Consensus       154 ~~~~~~~  160 (161)
T cd04113         154 FLKCARS  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=8.7e-32  Score=185.15  Aligned_cols=164  Identities=49%  Similarity=0.844  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777888888887788888888889999999999988888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++.+++.+..|+..+.....    ++.|+++|+||+|+...  .....+....+....+ .+++++|+.++.|++++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~----~~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l  153 (164)
T smart00175       81 DITNRESFENLKNWLKELREYAD----PNVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            99999999999889988876643    27899999999998754  4556677777777665 78999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028654          169 FECIAKNALKN  179 (206)
Q Consensus       169 ~~~i~~~~~~~  179 (206)
                      +++|.+.+.++
T Consensus       154 ~~~i~~~~~~~  164 (164)
T smart00175      154 FEELAREILKR  164 (164)
T ss_pred             HHHHHHHHhhC
Confidence            99999988653

Rab GTPases are implicated in vesicle trafficking.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=9.5e-32  Score=184.53  Aligned_cols=161  Identities=33%  Similarity=0.594  Sum_probs=136.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            36899999999999999999999888777777765444 55566777778899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|+++..++..+..|+..+......   .+.|+++|+||+|+..   .....++...++...+ .+++++||+++.|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  152 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEE  152 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHH
Confidence            9999999999998888888765422   3779999999999975   3455667777776665 7899999999999999


Q ss_pred             HHHHHHHHH
Q 028654          168 AFECIAKNA  176 (206)
Q Consensus       168 l~~~i~~~~  176 (206)
                      +|+++++.+
T Consensus       153 l~~~l~~~~  161 (162)
T cd04138         153 AFYTLVREI  161 (162)
T ss_pred             HHHHHHHHh
Confidence            999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=7.8e-32  Score=185.27  Aligned_cols=162  Identities=32%  Similarity=0.558  Sum_probs=136.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .++|+++|.+|+|||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988777767654 45556777788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|+++++++..+..|...+......   .+.|+++|+||+|+...  .....++...++...+ .+++++||+++.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNE  153 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHH
Confidence            9999999999999998888765432   37899999999998653  3445556666766665 7899999999999999


Q ss_pred             HHHHHHHHH
Q 028654          168 AFECIAKNA  176 (206)
Q Consensus       168 l~~~i~~~~  176 (206)
                      +|.++++.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd04176         154 LFAEIVRQM  162 (163)
T ss_pred             HHHHHHHhc
Confidence            999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.2e-31  Score=183.91  Aligned_cols=160  Identities=41%  Similarity=0.685  Sum_probs=140.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|||||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888889999999999999888889999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....    .+.|+++|+||+|+...  .....++...++...+ .+++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l  153 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERG----NDVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL  153 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence            99999999999999888765432    16899999999999643  5566677777777666 88999999999999999


Q ss_pred             HHHHHHH
Q 028654          169 FECIAKN  175 (206)
Q Consensus       169 ~~~i~~~  175 (206)
                      +++|.+.
T Consensus       154 ~~~i~~~  160 (161)
T cd01861         154 FRKIASA  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2.2e-31  Score=183.16  Aligned_cols=162  Identities=31%  Similarity=0.592  Sum_probs=136.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||++++.+..+...+.++.+..+ .....+.+..+.+.+|||||++++...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887766666665443 44556788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|++++.+++.+..|...+......   .+.|+++|+||+|+...  .....++...++...+ .+++++||++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~  154 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK  154 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence            9999999999999998888765332   26799999999999754  4455666777777766 7999999999999999


Q ss_pred             HHHHHHHHH
Q 028654          168 AFECIAKNA  176 (206)
Q Consensus       168 l~~~i~~~~  176 (206)
                      +|++|++.+
T Consensus       155 l~~~l~~~~  163 (164)
T cd04145         155 AFHDLVRVI  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.1e-31  Score=184.32  Aligned_cols=163  Identities=39%  Similarity=0.677  Sum_probs=140.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-cccccceecCcEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~vi~   86 (206)
                      .++|+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+||++|++.+. .....+++.+|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999988887778888777877888888888999999999998876 467778899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC---CC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE---GF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~  163 (206)
                      |||+++++++..+..|+..+......   .+.|+++|+||+|+...  +....+....++.... .+++++||++   +.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~  155 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND  155 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence            99999999999999999888765432   37899999999998764  5566677777877765 8999999999   88


Q ss_pred             CHHHHHHHHHHHH
Q 028654          164 NVEAAFECIAKNA  176 (206)
Q Consensus       164 ~i~~l~~~i~~~~  176 (206)
                      +++++|..+++.+
T Consensus       156 ~i~~~f~~l~~~~  168 (170)
T cd04115         156 HVEAIFMTLAHKL  168 (170)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2.2e-31  Score=183.31  Aligned_cols=162  Identities=28%  Similarity=0.444  Sum_probs=134.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||++++.++.+...+.++.+..+ ...+......+.+.+|||||++.+......+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            6899999999999999999999988777777765444 444556677789999999999999888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+...... ..++.|+++|+||+|+...  +....++...++...+ .+++++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~  156 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL  156 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence            999999999999888877655322 2247899999999999763  4456666666776665 78999999999999999


Q ss_pred             HHHHHHH
Q 028654          169 FECIAKN  175 (206)
Q Consensus       169 ~~~i~~~  175 (206)
                      |++|++.
T Consensus       157 f~~l~~~  163 (165)
T cd04140         157 FQELLNL  163 (165)
T ss_pred             HHHHHhc
Confidence            9999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.8e-31  Score=186.92  Aligned_cols=156  Identities=31%  Similarity=0.646  Sum_probs=135.7

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCCh
Q 028654           14 LGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM   93 (206)
Q Consensus        14 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~   93 (206)
                      +|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            59999999999999998888777888888888888888888899999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654           94 KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA  173 (206)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~  173 (206)
                      .++..+..|...+....     ++.|+++|+||+|+..   +.+..+.. .++...+ +.|+++||++|.|++++|.+|+
T Consensus        81 ~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~---~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKD---RKVKAKSI-TFHRKKN-LQYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-----CCCCEEEEEECccccc---ccCCHHHH-HHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999998754     2789999999999864   23333333 4555554 8899999999999999999999


Q ss_pred             HHHhhc
Q 028654          174 KNALKN  179 (206)
Q Consensus       174 ~~~~~~  179 (206)
                      +.+.+.
T Consensus       151 ~~i~~~  156 (200)
T smart00176      151 RKLIGD  156 (200)
T ss_pred             HHHHhc
Confidence            998775

Ran is involved in the active transport of proteins through nuclear pores.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=3.9e-31  Score=181.79  Aligned_cols=162  Identities=43%  Similarity=0.747  Sum_probs=141.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||++++.++.+.....++.+..+....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999998777778877777778888888889999999999998888888889999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|+++++++..+..|+..+.....    ++.|+++++||+|+...  .....++...+....+ .+++++|+++|.|+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~  153 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE  153 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence            999999999999999998876542    37899999999998753  4456667777777766 8899999999999999


Q ss_pred             HHHHHHHHH
Q 028654          168 AFECIAKNA  176 (206)
Q Consensus       168 l~~~i~~~~  176 (206)
                      ++++|++.+
T Consensus       154 l~~~l~~~l  162 (163)
T cd01860         154 LFTEIAKKL  162 (163)
T ss_pred             HHHHHHHHh
Confidence            999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=2.6e-31  Score=181.20  Aligned_cols=157  Identities=26%  Similarity=0.479  Sum_probs=129.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||+.++..+.+...+.++ ...+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            48999999999999999999988876655443 3334 46678888888999999999864     23567899999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+.....   .++.|+++|+||.|+.....+.+..++.+.+++..+.+.|++|||+++.|++++
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~  150 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRN---ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV  150 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence            99999999999999998876542   236899999999998644446777888888887765589999999999999999


Q ss_pred             HHHHHHH
Q 028654          169 FECIAKN  175 (206)
Q Consensus       169 ~~~i~~~  175 (206)
                      |..+++.
T Consensus       151 f~~~~~~  157 (158)
T cd04103         151 FQEAAQK  157 (158)
T ss_pred             HHHHHhh
Confidence            9999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=2.9e-31  Score=183.19  Aligned_cols=164  Identities=24%  Similarity=0.352  Sum_probs=136.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +.+||+++|.+|+|||||++++.++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+......+++.+|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            5789999999999999999999999988 788888887777777778888889999999999998888888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+..      ..+.|+++|+||+|+.+.  .....++.+.++...+...++++||+++.|+
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS  154 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence            99999999999888787765421      126899999999999654  2233344556666665345799999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028654          166 EAAFECIAKNALK  178 (206)
Q Consensus       166 ~~l~~~i~~~~~~  178 (206)
                      +++|+.|++.+..
T Consensus       155 ~~lf~~l~~~~~~  167 (169)
T cd01892         155 NELFTKLATAAQY  167 (169)
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=3.6e-31  Score=183.84  Aligned_cols=162  Identities=28%  Similarity=0.534  Sum_probs=136.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEEC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~   90 (206)
                      |+++|.+|+|||||++++.++.+...+.++....+ ...+.+++..+.+.+|||||++.+......+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777765444 45566788888999999999999988888899999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEeec
Q 028654           91 NVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      +++++++.+. .|+..+.....     +.|+++|+||+|+....          ...+..++...+++..+..+++++||
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  154 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-----NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA  154 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence            9999999885 58887766432     78999999999986531          12366777788888887568999999


Q ss_pred             cCCCCHHHHHHHHHHHHhh
Q 028654          160 KEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~  178 (206)
                      +++.|++++|+.+++.+++
T Consensus       155 ~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      155 LTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CCCCCHHHHHHHHHHHhcC
Confidence            9999999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=4.6e-31  Score=191.49  Aligned_cols=167  Identities=29%  Similarity=0.490  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.||||+|++.+......++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999888877777765 555667788888899999999999988887788889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCC-----CCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASP-----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      |+++.++++.+..|+..+......     ....+.|+++|+||+|+...  +.+..+++..+........++++||+++.
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~  157 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS  157 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            999999999999998888654211     12237899999999999753  44666777777654444789999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 028654          164 NVEAAFECIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~  178 (206)
                      |++++|++|++.+..
T Consensus       158 gI~elf~~L~~~~~~  172 (247)
T cd04143         158 NLDEMFRALFSLAKL  172 (247)
T ss_pred             CHHHHHHHHHHHhcc
Confidence            999999999996643

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1e-30  Score=183.38  Aligned_cols=168  Identities=29%  Similarity=0.506  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      .||+++|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+.......+..+|++++++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            4899999999999999999998777766666654443 345566777888999999999888776667788999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--------cceecHHHHHHHHHHcCCCcEEEeec
Q 028654           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      |+++.++++.+. .|...+.....     +.|+++|+||+|+....        .+.+..++...+++..+..+++++||
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  155 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-----NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA  155 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence            999999999885 68887765432     68999999999985421        23455667778888877668999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCC
Q 028654          160 KEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++|.|++++|+++.+.++..++.
T Consensus       156 ~~~~~v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         156 LTGEGVDDVFEAATRAALLVRKS  178 (187)
T ss_pred             CCCCCHHHHHHHHHHHHhcccCc
Confidence            99999999999999988776664

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.1e-30  Score=180.44  Aligned_cols=163  Identities=33%  Similarity=0.609  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      ++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.++++++|+
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6899999999999999999999888777777765443 566677888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|...+.....   ..+.|+++++||+|+...  +....++...+.+..+..+++++||+++.|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~  155 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV  155 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence            99999999999999888876432   237899999999999754  4556666677777766678999999999999999


Q ss_pred             HHHHHHHHh
Q 028654          169 FECIAKNAL  177 (206)
Q Consensus       169 ~~~i~~~~~  177 (206)
                      |+++++.++
T Consensus       156 f~~i~~~~~  164 (168)
T cd04177         156 FIDLVRQII  164 (168)
T ss_pred             HHHHHHHHh
Confidence            999998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-31  Score=168.61  Aligned_cols=194  Identities=34%  Similarity=0.614  Sum_probs=169.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      .+.++-+++|.-|+|||.|++.|..+.|-.....+.+..+....+++.+..+++++|||.|+++|+...+.+++.+-+.+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal   88 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   88 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence            45789999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++.+.+...+..|+........    ++.-+++++||.|+...  +.+..++.+.|+.+.+ ..|.++|+++|.++
T Consensus        89 mvyditrrstynhlsswl~dar~ltn----pnt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~nv  161 (215)
T KOG0097|consen   89 MVYDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQNV  161 (215)
T ss_pred             EEEEehhhhhhhhHHHHHhhhhccCC----CceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccCcH
Confidence            99999999999999999988765443    47778999999999876  8899999999999988 88999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC-------------CCCCCCccccCCCCCccCCCCCCC
Q 028654          166 EAAFECIAKNALKNEPQ-------------EEDYLPDTIDVGGGQQQRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~c~c  206 (206)
                      ++.|-.-.+.++.+-+.             ..+..|..-+...+....+.||+|
T Consensus       162 edafle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  162 EDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            99999998888776554             223345555555556777788988

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=1.5e-30  Score=178.64  Aligned_cols=161  Identities=42%  Similarity=0.706  Sum_probs=136.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+...+.++.+.......+.+.+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887666667666666666777777789999999999988888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++++++.+..|+..+......    +.|+++|+||+|+...  .....+++..+....+ .+++++|++++.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~  153 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL  153 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence            999999999999998888766543    6799999999999754  4455566666666665 78999999999999999


Q ss_pred             HHHHHHHH
Q 028654          169 FECIAKNA  176 (206)
Q Consensus       169 ~~~i~~~~  176 (206)
                      ++++.+.+
T Consensus       154 ~~~l~~~~  161 (162)
T cd04123         154 FLSLAKRM  161 (162)
T ss_pred             HHHHHHHh
Confidence            99998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1.1e-30  Score=179.75  Aligned_cols=160  Identities=32%  Similarity=0.600  Sum_probs=133.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +||+++|++|||||||++++...  .+...+.++.+.++....+.+. +..+.+.+|||||++.+......+++.+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999864  5667777888777766666664 56789999999999988888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|+++++++..+..|+..+....     .+.|+++|+||+|+.+.  .....+....+....+ .+++++|++++.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  152 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY  152 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence            9999999999999999998877653     26799999999999754  3344445555555555 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 028654          166 EAAFECIAKNA  176 (206)
Q Consensus       166 ~~l~~~i~~~~  176 (206)
                      +++|+.+.+.+
T Consensus       153 ~~l~~~l~~~~  163 (164)
T cd04101         153 EEPFESLARAF  163 (164)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=1.6e-30  Score=178.43  Aligned_cols=160  Identities=38%  Similarity=0.676  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887767788777777777777888889999999999988888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |.+++.++..+..|+..+......   .+.|+++|+||+|+..   .....++...+....+ .+++++|+++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~  153 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA  153 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence            999999999998898888766442   3789999999999974   3445567777777665 88999999999999999


Q ss_pred             HHHHHHH
Q 028654          169 FECIAKN  175 (206)
Q Consensus       169 ~~~i~~~  175 (206)
                      ++++.+.
T Consensus       154 ~~~~~~~  160 (161)
T cd01863         154 FEELVEK  160 (161)
T ss_pred             HHHHHHh
Confidence            9999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.3e-30  Score=180.82  Aligned_cols=160  Identities=30%  Similarity=0.490  Sum_probs=134.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999888877777765 4444556777888899999999999999998888999999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+ ..|+..+....     ++.|+++|+||+|+....          .+.+..++...++...+..+++++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~  154 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC  154 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence            99999999987 46877776432     268999999999986532          356677788888888775599999


Q ss_pred             eccCCCCHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAK  174 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~  174 (206)
                      ||+++.|++++|+.++-
T Consensus       155 Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         155 SALTQKNLKEVFDTAIL  171 (173)
T ss_pred             eCCCCCCHHHHHHHHHh
Confidence            99999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=1.9e-30  Score=180.24  Aligned_cols=163  Identities=26%  Similarity=0.453  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++..+.+...+.++... .....+.+++..+.+.+|||||++.+......+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999999887666666543 33445667888888999999999999888888999999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|...+...     .++.|+++|+||+|+.+...          ..+..++...+++..+..+++++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  154 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC  154 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999998885 576666543     23789999999999865421          24566778888888876689999


Q ss_pred             eccCCCCHHHHHHHHHHHHh
Q 028654          158 SAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ||+++.|++++|+.+++.++
T Consensus       155 Sa~~~~gi~~~f~~~~~~~~  174 (174)
T cd04135         155 SALTQKGLKTVFDEAILAIL  174 (174)
T ss_pred             cCCcCCCHHHHHHHHHHHhC
Confidence            99999999999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=4.6e-30  Score=177.45  Aligned_cols=163  Identities=39%  Similarity=0.654  Sum_probs=137.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||+||+..+......+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999888777777777777777778888888899999999999888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....+....+..... .+++++|+++|.|++
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  158 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNVE  158 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCHH
Confidence            9999999999888889887765543    26789999999998754  4455555566665555 789999999999999


Q ss_pred             HHHHHHHHHH
Q 028654          167 AAFECIAKNA  176 (206)
Q Consensus       167 ~l~~~i~~~~  176 (206)
                      ++|++|.+.+
T Consensus       159 ~l~~~i~~~~  168 (169)
T cd04114         159 KLFLDLACRL  168 (169)
T ss_pred             HHHHHHHHHh
Confidence            9999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=4.9e-30  Score=183.97  Aligned_cols=164  Identities=27%  Similarity=0.402  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee-cCcEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL   86 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~vi~   86 (206)
                      +||+++|.+|+|||||+++|..+.+. ..+.++.+.+.....+.+++....+.+|||||++.+  ....++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence            58999999999999999999887775 555555554666777788888899999999998822  2334556 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||++++.+++.+..|+..+.....   ..+.|+++|+||+|+...  +.+..++...++...+ .+++++||+++.|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~  152 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD  152 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence            9999999999999999888866432   237899999999999765  5666777777777666 789999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 028654          167 AAFECIAKNALKNE  180 (206)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (206)
                      ++|++|++.+....
T Consensus       153 ~l~~~l~~~~~~~~  166 (221)
T cd04148         153 ELLEGIVRQIRLRR  166 (221)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999886433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=3.7e-30  Score=180.87  Aligned_cols=160  Identities=25%  Similarity=0.416  Sum_probs=126.7

Q ss_pred             eeEEEEEcCCCCCHHHHHH-HHhcCC-----CCCCcccccce-eeEEEE--------EEeCCeEEEEEEeeCCCcccccc
Q 028654            8 LLKVIILGDSGVGKTSLMN-QYVNRK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~   72 (206)
                      .+||+++|.+|+|||||+. ++.++.     +...+.||.+. +.+...        ..+++..+.+.+|||+|++..  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999996 555443     33455666642 222211        246788899999999998753  


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-----------------Cc
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NS  134 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----------------~~  134 (206)
                      ....+++.+|++|+|||++++.+++.+. .|...+....     ++.|+++|+||+|+...                 ..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~  154 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA  154 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence            4456789999999999999999999986 5888876553     26799999999998642                 13


Q ss_pred             ceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          135 RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      +.+..++++.+++..+ ++|++|||++|.|++++|+.+++.
T Consensus       155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence            6788899999999888 699999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1e-29  Score=176.72  Aligned_cols=162  Identities=27%  Similarity=0.524  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      .||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......++..+|++++|+
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777765544 345667888889999999999988888878889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEEEe
Q 028654           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      |++++++++.+. .|...+....     .+.|+++|+||+|+.+...          ..+..++...++...+..+++++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~  155 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC  155 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence            999999988874 5777665432     2789999999999865321          23345667777777766789999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~  176 (206)
                      ||++|.|++++|++|.+.+
T Consensus       156 Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         156 SAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ccccCcCHHHHHHHHHHHh
Confidence            9999999999999999765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00154 Rab Rab family

Probab=99.97  E-value=6.5e-30  Score=174.61  Aligned_cols=159  Identities=47%  Similarity=0.855  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+...+....+.+||+||+..+......+++.+|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988877888888888888888888899999999999998888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |+++++++..+..|+..+.....    .+.|+++++||+|+...  .....++...+..... .+++++|++++.|++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~  153 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAP----ENIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL  153 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence            99999999999999988877653    26799999999999733  4566777888877754 89999999999999999


Q ss_pred             HHHHHH
Q 028654          169 FECIAK  174 (206)
Q Consensus       169 ~~~i~~  174 (206)
                      +++|.+
T Consensus       154 ~~~i~~  159 (159)
T cd00154         154 FQSLAE  159 (159)
T ss_pred             HHHHhC
Confidence            999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=4.1e-30  Score=177.06  Aligned_cols=162  Identities=28%  Similarity=0.459  Sum_probs=131.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-cccccccceecCcEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~vi~v~   88 (206)
                      +|+++|++|+|||||+++++.+.+...+.++....+ ...+.+++..+.+.+||+||+.. .......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998877666666654333 45567788888999999999885 3345667788999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC-CCHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEA  167 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~  167 (206)
                      |++++++++.+..|+..+.....  ...+.|+++|+||+|+...  +.+..++...++...+ .+++++|++++ .|+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~  154 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS  154 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence            99999999999999888776432  1236899999999998654  4556677778887777 78999999999 49999


Q ss_pred             HHHHHHHHHh
Q 028654          168 AFECIAKNAL  177 (206)
Q Consensus       168 l~~~i~~~~~  177 (206)
                      +|..+.+.+.
T Consensus       155 ~f~~l~~~~~  164 (165)
T cd04146         155 VFHELCREVR  164 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=2.4e-29  Score=172.91  Aligned_cols=163  Identities=34%  Similarity=0.568  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++....+...+.++.+..+ ......++..+.+.+||+||+..+......+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999887776666665443 455567778889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++.++..+..|+..+.....   ..+.|+++|+||+|+...  .....++...+....+ .+++++|++++.|++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l  153 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA  153 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence            99999999999999888887644   227899999999999753  3345556666666665 78999999999999999


Q ss_pred             HHHHHHHHhh
Q 028654          169 FECIAKNALK  178 (206)
Q Consensus       169 ~~~i~~~~~~  178 (206)
                      |+++.+.+.+
T Consensus       154 ~~~l~~~~~~  163 (164)
T cd04139         154 FYDLVREIRQ  163 (164)
T ss_pred             HHHHHHHHHh
Confidence            9999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.8e-29  Score=178.57  Aligned_cols=168  Identities=30%  Similarity=0.437  Sum_probs=134.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|.+|+|||||++++.+..+...+.++.. ......+.+.+..+.+.+||+||+..+......++..+|++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888766666653 3445567777877899999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      ++++.+++.+..|+..+......   .+.|+++|+||+|+.... .....+............+++++||++|.|++++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  155 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEEE-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF  155 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEcccccccc-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence            99999999999998888765432   278999999999987531 33334344433332223789999999999999999


Q ss_pred             HHHHHHHhhcCCC
Q 028654          170 ECIAKNALKNEPQ  182 (206)
Q Consensus       170 ~~i~~~~~~~~~~  182 (206)
                      ++|++.+....+.
T Consensus       156 ~~l~~~~~~~~~~  168 (198)
T cd04147         156 KELLRQANLPYNL  168 (198)
T ss_pred             HHHHHHhhccccc
Confidence            9999988755553

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=2e-31  Score=167.83  Aligned_cols=163  Identities=41%  Similarity=0.674  Sum_probs=148.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECC
Q 028654           13 ILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                      ++|.+++|||.|+-++-.+.|. ....++.+.++..+.+..+++.+++++|||.|+++|++....+++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999888777665 677888999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHH
Q 028654           92 VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC  171 (206)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~  171 (206)
                      +..+|++.+.|+.++..+..+    .+.+.+++||+|+.+.  +.+..++.+.++..++ +||.++|+++|.+++-.|-.
T Consensus        82 nkasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~  154 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLA  154 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHHH
Confidence            999999999999999988765    5678899999999876  7788899999999998 99999999999999999999


Q ss_pred             HHHHHhhcCCC
Q 028654          172 IAKNALKNEPQ  182 (206)
Q Consensus       172 i~~~~~~~~~~  182 (206)
                      |.+.+.+..-.
T Consensus       155 ia~~l~k~~~~  165 (192)
T KOG0083|consen  155 IAEELKKLKMG  165 (192)
T ss_pred             HHHHHHHhccC
Confidence            99988765443

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=2.8e-29  Score=173.47  Aligned_cols=160  Identities=19%  Similarity=0.357  Sum_probs=125.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|.++||||||++++.+..+. .+.+|.+..+.  .+.+  ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            5899999999999999999988654 35566554443  3333  34789999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-----CCcEEEeeccCCCC
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-----NIPYFETSAKEGFN  164 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~  164 (206)
                      +++++++..+..|+..+.....   ..+.|+++|+||+|+.+.    ...+++..+.....     .+.++++||++|.|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  148 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKE---LRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG  148 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChh---hCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence            9999999998888887764321   225799999999999642    44555555543211     13688999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 028654          165 VEAAFECIAKNALKNEP  181 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~  181 (206)
                      ++++|++|.+.+++..+
T Consensus       149 v~~~f~~l~~~~~~~~~  165 (169)
T cd04158         149 LYEGLDWLSRQLVAAGV  165 (169)
T ss_pred             HHHHHHHHHHHHhhccc
Confidence            99999999998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00876 Ras Ras family

Probab=99.97  E-value=6.3e-29  Score=170.14  Aligned_cols=159  Identities=36%  Similarity=0.655  Sum_probs=135.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|++|||||||++++.+..+...+.++.. ......+.+.+..+.+.+||+||+..+......+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666665 5556666677777899999999999888888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      +++++++..+..|...+......   .+.|+++|+||+|+...  .....+.+..+....+ .+++++|++++.|+++++
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~  153 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF  153 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence            99999999998888888766442   36799999999999864  5566777888877766 899999999999999999


Q ss_pred             HHHHHH
Q 028654          170 ECIAKN  175 (206)
Q Consensus       170 ~~i~~~  175 (206)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (160)
T cd00876         154 KLLVRE  159 (160)
T ss_pred             HHHHhh
Confidence            999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=3.4e-29  Score=175.05  Aligned_cols=167  Identities=22%  Similarity=0.291  Sum_probs=128.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .++|+++|.+|||||||++++....+... .++.+.......+.. .+..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            47999999999999999999998776543 566555554444443 3356889999999999888888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--c---CCCcEEEeeccC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--K---GNIPYFETSAKE  161 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~s~~~  161 (206)
                      |+|++++.++..+..|+..+......   .+.|+++|+||+|+...    ...+++..+...  .   ...+++++||++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~  154 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII  154 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence            99999988888887787777654322   26899999999998643    233444443321  1   124688999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCCC
Q 028654          162 GFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +.|+++++++|.+.+.+..+-
T Consensus       155 ~~gi~~l~~~l~~~l~~~~~~  175 (183)
T cd04152         155 GEGLQEGLEKLYEMILKRRKM  175 (183)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999988765553

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.1e-28  Score=170.91  Aligned_cols=160  Identities=29%  Similarity=0.541  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||+++|.+..+...+.++.. ..........+..+.+.+||+||++++.......++.+|++++|+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666666654 334455567788889999999999988887888889999999999


Q ss_pred             ECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc---------eecHHHHHHHHHHcCCCcEEEee
Q 028654           89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR---------VVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      |++++.++... ..|+..+.....     +.|+++|+||+|+......         ....++...+....+..+++++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  154 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS  154 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence            99998888776 456666654432     6899999999999765432         23466777777777755999999


Q ss_pred             ccCCCCHHHHHHHHHH
Q 028654          159 AKEGFNVEAAFECIAK  174 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~  174 (206)
                      ++++.|+++++++|.+
T Consensus       155 a~~~~gi~~l~~~i~~  170 (171)
T cd00157         155 ALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCCCCCHHHHHHHHhh
Confidence            9999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=7.6e-30  Score=175.92  Aligned_cols=156  Identities=16%  Similarity=0.280  Sum_probs=120.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|.+|+|||||++++..+.+. .+.++.+.++.  .+..  ..+.+.+|||||++.+...+..+++.+|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999877654 34566655443  2223  34789999999999998888899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (206)
                      |+|++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.    ...+++..+...    .....++++||++|
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g  155 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDRE---MRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATSG  155 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHh---hcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence            9999999888888777766653211   126799999999998643    344555554321    11246899999999


Q ss_pred             CCHHHHHHHHHH
Q 028654          163 FNVEAAFECIAK  174 (206)
Q Consensus       163 ~~i~~l~~~i~~  174 (206)
                      .|++++|++|.+
T Consensus       156 ~gv~~~~~~l~~  167 (168)
T cd04149         156 DGLYEGLTWLSS  167 (168)
T ss_pred             CChHHHHHHHhc
Confidence            999999999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=1.8e-28  Score=171.20  Aligned_cols=166  Identities=35%  Similarity=0.531  Sum_probs=136.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      .||+++|.+|+|||||++++.+..+...+.++....+ ...+.+.+..+.+.+||+||++++......++..++++++++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998887766666654433 445566777788999999999998888888899999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |.++..+++.+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+++++|++++.|+.++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l  154 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA  154 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence            999999999998888887765432   36799999999998753  3444556666666655 78999999999999999


Q ss_pred             HHHHHHHHhhcCC
Q 028654          169 FECIAKNALKNEP  181 (206)
Q Consensus       169 ~~~i~~~~~~~~~  181 (206)
                      +.++.+.+.+...
T Consensus       155 ~~~l~~~~~~~~~  167 (180)
T cd04137         155 FELLIEEIEKVEN  167 (180)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999998877654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.8e-29  Score=175.28  Aligned_cols=158  Identities=18%  Similarity=0.281  Sum_probs=119.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|.+|+|||||++++..+.+. .+.++.+..+.  ...+  ..+.+.+||+||++.+...+..+++.+|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999876654 35566655543  2333  34789999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (206)
                      |+|++++++++....|+..+....   ..++.|+++|+||.|+.+..    ..+++......    .....++++||++|
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  159 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATSG  159 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence            999999999988887777765421   12367999999999997532    22232222111    11235778999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028654          163 FNVEAAFECIAKNA  176 (206)
Q Consensus       163 ~~i~~l~~~i~~~~  176 (206)
                      .|++++|++|.+.+
T Consensus       160 ~gv~e~~~~l~~~~  173 (175)
T smart00177      160 DGLYEGLTWLSNNL  173 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.9e-29  Score=175.82  Aligned_cols=162  Identities=15%  Similarity=0.284  Sum_probs=121.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..+||+++|.++||||||++++..+.+. .+.++.+..+.  .+..  ..+.+.+||+||++.+...+..+++.+|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44689999999999999999999877664 35566655443  3333  3478999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----CCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~  161 (206)
                      +|+|+++++++..+..++..+...   ....+.|+++|+||+|+....    ..+++.....-.    ..+.++++||++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~---~~~~~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~~~~~~~~~Sa~~  162 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNE---DELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQRHWYIQSTCATS  162 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcC---HhhCCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence            999999998888776666655321   122378999999999997542    233333322111    112466899999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      |+|++++|++|.+.+.++
T Consensus       163 g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        163 GEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             CCCHHHHHHHHHHHHhhc
Confidence            999999999999887653

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.1e-28  Score=170.10  Aligned_cols=163  Identities=24%  Similarity=0.343  Sum_probs=123.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||+++|.++.+...+..+ ...+ .....+.+..+.+.+|||||...+...+..++..+|++++|+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999998876543322 2222 333445667789999999999887777777889999999999


Q ss_pred             ECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEeeccCCCCHH
Q 028654           89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVE  166 (206)
Q Consensus        89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~  166 (206)
                      |++++.+++.+. .|...+.....     +.|+++|+||+|+.+........+.+..+...... .+++++||+++.|++
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-----~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  153 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-----KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS  153 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence            999999999874 57666654332     67999999999997643211122333333333332 479999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|+.+.+.+.+
T Consensus       154 ~lf~~~~~~~~~  165 (166)
T cd01893         154 EVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHhcC
Confidence            999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=3e-29  Score=171.54  Aligned_cols=155  Identities=16%  Similarity=0.304  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|||||||++++..+.+. .+.++.+..+.  .+.+  ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877765 35666655442  2333  3478999999999999888899999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH---cCCCcEEEeeccCCCCH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNV  165 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~i  165 (206)
                      |++++.++..+..|+..+.....   ..+.|+++++||+|+.+..   ...+..+.+...   ...+.++++||++|.|+
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv  149 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDE---LRDAVLLVFANKQDLPNAM---SAAEVTDKLGLHSLRNRNWYIQATCATSGDGL  149 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHH---hcCCCEEEEEECCCCCCCC---CHHHHHHHhCccccCCCCEEEEEeeCCCCCCH
Confidence            99999999888777776653211   1257999999999996531   111222222111   11245789999999999


Q ss_pred             HHHHHHHHH
Q 028654          166 EAAFECIAK  174 (206)
Q Consensus       166 ~~l~~~i~~  174 (206)
                      +++|++|.+
T Consensus       150 ~~~~~~l~~  158 (159)
T cd04150         150 YEGLDWLSN  158 (159)
T ss_pred             HHHHHHHhc
Confidence            999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.6e-31  Score=170.18  Aligned_cols=180  Identities=44%  Similarity=0.684  Sum_probs=156.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC---------CeEEEEEEeeCCCcccccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~   76 (206)
                      ++.++.+.+|.+|+|||+++.++..+.|......+.+.++..+.+-+.         +..+.+++|||.|+++|+++...
T Consensus         7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA   86 (219)
T KOG0081|consen    7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA   86 (219)
T ss_pred             HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence            356788899999999999999999999999999999999988877663         23578999999999999999999


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.|-+++++||+++..+|.++..|+.++.-++--.   +.-+++++||+|+.+.  +.+..+....++..++ +|||+
T Consensus        87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYfE  160 (219)
T KOG0081|consen   87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYFE  160 (219)
T ss_pred             HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCeee
Confidence            9999999999999999999999999999998765433   4459999999999876  8889999999999998 99999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcCCC--CCCCCCccc
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNEPQ--EEDYLPDTI  191 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~~~--~~~~~~~~~  191 (206)
                      +||-+|.++++..+.++..++++-++  +...+|..+
T Consensus       161 TSA~tg~Nv~kave~LldlvM~Rie~~v~~s~~p~~~  197 (219)
T KOG0081|consen  161 TSACTGTNVEKAVELLLDLVMKRIEQCVEKSEIPLLV  197 (219)
T ss_pred             eccccCcCHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence            99999999999999999988776655  344455443

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=6e-29  Score=173.49  Aligned_cols=161  Identities=17%  Similarity=0.299  Sum_probs=120.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|++|+|||||++++..+.+.. +.++.+..+.  .+..  ..+.+.+|||||++.+...+..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998776653 5566654443  3333  34789999999999999889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (206)
                      |+|+++++++.....++..+...   ....+.|+++|+||.|+.+..    ..+++......    ...+.++++||++|
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg  163 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATTA  163 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence            99999998888877666655432   112367999999999986531    22222221111    11135678999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 028654          163 FNVEAAFECIAKNALKN  179 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~  179 (206)
                      .|++++|++|.+.+.+.
T Consensus       164 ~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        164 QGLYEGLDWLSANIKKS  180 (182)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999877653

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=3.9e-29  Score=171.01  Aligned_cols=169  Identities=28%  Similarity=0.493  Sum_probs=152.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ..+|++++|...+|||+|+..+..+.|+..+.||.. +.+...+.++ ++.+.+.+|||.|+++|...+...+..+|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            468999999999999999999999999999999996 5567778885 99999999999999999998888999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +||++.++++++++ .+|+.++..+++     +.|+|+|++|.||..+.          ...+..++...++++.+...|
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y  156 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY  156 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence            99999999999996 889999988874     88999999999998532          135778889999999998999


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +++||++..|++++|+..+..++..++
T Consensus       157 ~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  157 LECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             eeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999999999988665

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=8.5e-28  Score=172.18  Aligned_cols=168  Identities=29%  Similarity=0.588  Sum_probs=141.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+......++..++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            45579999999999999999998888888888888888888777777788889999999999998888888888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|+++..++..+..|+..+....     .+.|+++++||+|+...   ....+. ..+....+ ..++++|++++.|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~---~~~~~~-~~~~~~~~-~~~~e~Sa~~~~~  155 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDR---QVKARQ-ITFHRKKN-LQYYDISAKSNYN  155 (215)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCC
Confidence            99999999999999999998887653     26899999999998642   222333 24444444 7899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      ++++|.+|++.+...+.-
T Consensus       156 v~~~f~~ia~~l~~~p~~  173 (215)
T PTZ00132        156 FEKPFLWLARRLTNDPNL  173 (215)
T ss_pred             HHHHHHHHHHHHhhcccc
Confidence            999999999999876553

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.2e-28  Score=170.88  Aligned_cols=165  Identities=35%  Similarity=0.566  Sum_probs=149.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ...+|+++|.+|+|||+|..++.+..|...+.|+.. +.+.+.+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            357999999999999999999999999999999986 6668888899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      ||+++++.+|+.+..+...+......   ..+|+++|+||+|+...  +++..++...++.... ++|+++||+.+.+++
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~---~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~  154 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGR---DDVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD  154 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCc---CCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence            99999999999999999988443332   26899999999999876  8899999999988888 679999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|..+++.+-.
T Consensus       155 ~~F~~L~r~~~~  166 (196)
T KOG0395|consen  155 EVFYELVREIRL  166 (196)
T ss_pred             HHHHHHHHHHHh
Confidence            999999997766

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=6.4e-29  Score=172.35  Aligned_cols=158  Identities=21%  Similarity=0.386  Sum_probs=121.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ++..++|+++|++|+|||||++++.+..+. ...++.+  +....+.++  .+.+.+||+||++.+...+..++..+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            456789999999999999999999987543 4445544  333444444  37889999999998888888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeecc
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~  160 (206)
                      ++|+|++++.++.....|+..+....   ...+.|+++|+||+|+.+.    ...+++..+...    ...++++++||+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGA----LSEEEIREALELDKISSHHWRIQPCSAV  158 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccC----CCHHHHHHHhCccccCCCceEEEeccCC
Confidence            99999999988888877777765422   1237899999999999753    234444444321    224689999999


Q ss_pred             CCCCHHHHHHHHHH
Q 028654          161 EGFNVEAAFECIAK  174 (206)
Q Consensus       161 ~~~~i~~l~~~i~~  174 (206)
                      +|.|++++|+++++
T Consensus       159 ~g~gi~~l~~~l~~  172 (173)
T cd04154         159 TGEGLLQGIDWLVD  172 (173)
T ss_pred             CCcCHHHHHHHHhc
Confidence            99999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=4.3e-29  Score=171.59  Aligned_cols=155  Identities=18%  Similarity=0.246  Sum_probs=120.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      .|+++|++|+|||||+++|.+..+...+.++.+...    ..++...+.+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            478999999999999999999877777777766443    2234456889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec--HHHHHHHHHHcCCCcEEEeeccC------
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS--EKKAKAWCASKGNIPYFETSAKE------  161 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~------  161 (206)
                      .+++.++..+..|+..+....     ++.|+++|+||+|+.........  ...+..++...+ +.++++||++      
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~  150 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR  150 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence            999988888888877775332     37899999999998754211100  012233444333 7899999998      


Q ss_pred             CCCHHHHHHHHHH
Q 028654          162 GFNVEAAFECIAK  174 (206)
Q Consensus       162 ~~~i~~l~~~i~~  174 (206)
                      ++|++++|+.++.
T Consensus       151 ~~~v~~~~~~~~~  163 (164)
T cd04162         151 MEAVKDLLSQLIN  163 (164)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=2.5e-28  Score=167.57  Aligned_cols=156  Identities=17%  Similarity=0.277  Sum_probs=115.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +|+++|++|||||||+++|.+..+ ...+.++.+....  .+.  ...+.+.+|||||+..+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 4455566554332  222  23478899999999999988999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----HcCCCcEEEeeccCCCC
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFN  164 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~  164 (206)
                      |++++.++.....|+..+..... ....+.|+++|+||+|+.+..    ..+++.....    ......++++||++|.|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g  151 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL----TAVKITQLLGLENIKDKPWHIFASNALTGEG  151 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC----CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence            99999888877777777654321 112378999999999997542    1222222211    11124689999999999


Q ss_pred             HHHHHHHHHH
Q 028654          165 VEAAFECIAK  174 (206)
Q Consensus       165 i~~l~~~i~~  174 (206)
                      ++++|++|.+
T Consensus       152 v~~~~~~l~~  161 (162)
T cd04157         152 LDEGVQWLQA  161 (162)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=5.1e-28  Score=167.88  Aligned_cols=156  Identities=23%  Similarity=0.342  Sum_probs=117.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|++|+|||||++++..+.+.. ..++.+..+.  .+.+.  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            36899999999999999999998877654 4555554443  33333  4789999999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-HHH---HcCCCcEEEeeccCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCA---SKGNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~s~~~~  162 (206)
                      |+|+++++++.....++..+....   ...+.|+++++||+|+.+.    ...+++.. +..   ....++++++||+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~---~~~~~p~viv~NK~Dl~~~----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g  161 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHE---DLRKAVLLVLANKQDLKGA----MTPAEISESLGLTSIRDHTWHIQGCCALTG  161 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence            999999888877766666654332   2236899999999998753    12233222 211   112357999999999


Q ss_pred             CCHHHHHHHHHH
Q 028654          163 FNVEAAFECIAK  174 (206)
Q Consensus       163 ~~i~~l~~~i~~  174 (206)
                      .|++++|++|.+
T Consensus       162 ~gi~e~~~~l~~  173 (174)
T cd04153         162 EGLPEGLDWIAS  173 (174)
T ss_pred             CCHHHHHHHHhc
Confidence            999999999975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=7.9e-28  Score=164.51  Aligned_cols=153  Identities=22%  Similarity=0.360  Sum_probs=111.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|++++|||||++++..+.+.. ..++.+.+..  .+.+  ....+.+|||||+..+...+..+++.+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776543 3455444332  3333  34789999999999988888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-HHHH---cCCCcEEEeeccCCCCH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCAS---KGNIPYFETSAKEGFNV  165 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~s~~~~~~i  165 (206)
                      ++++.++.....++..+....   ...+.|+++|+||+|+.+..    ..+++.. +...   ....+++++||+++.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  148 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEE---ELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL  148 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhch---hhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence            999877766655555443221   12368999999999997542    1222222 2111   11246999999999999


Q ss_pred             HHHHHHHHH
Q 028654          166 EAAFECIAK  174 (206)
Q Consensus       166 ~~l~~~i~~  174 (206)
                      +++|++|.+
T Consensus       149 ~~l~~~l~~  157 (158)
T cd04151         149 DEGMDWLVN  157 (158)
T ss_pred             HHHHHHHhc
Confidence            999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.2e-27  Score=163.95  Aligned_cols=154  Identities=22%  Similarity=0.358  Sum_probs=115.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      +|+++|++|+|||||++++.++.+.. ..++.+..+  ..+.. +..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887653 345544333  33333 245789999999999888888888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--Hc---CCCcEEEeeccCCCC
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK---GNIPYFETSAKEGFN  164 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~s~~~~~~  164 (206)
                      ++++.++.....|+..+.....   ..+.|+++|+||+|+....    ..+++.....  ..   .+.+++++||++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g  149 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEH---IKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG  149 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchh---hcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence            9998888888777777654321   1378999999999986431    1222222111  11   225689999999999


Q ss_pred             HHHHHHHHHH
Q 028654          165 VEAAFECIAK  174 (206)
Q Consensus       165 i~~l~~~i~~  174 (206)
                      ++++|++|.+
T Consensus       150 v~~~~~~i~~  159 (160)
T cd04156         150 LAEAFRKLAS  159 (160)
T ss_pred             hHHHHHHHhc
Confidence            9999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1.5e-27  Score=164.44  Aligned_cols=157  Identities=18%  Similarity=0.267  Sum_probs=118.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      +|+++|++|||||||++++.+. +...+.++.+..  ...+.+.  .+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4799999999999999999876 555666666543  3344443  4788999999999999889999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHH--HHHHHHHHcC-CCcEEEeeccCC----
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASKG-NIPYFETSAKEG----  162 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s~~~~----  162 (206)
                      +++..++..+..|+..+.....   ..+.|+++|+||+|+.+........+  .+..++...+ .+.++++||++|    
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~---~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~  152 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPR---VSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCcc---ccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence            9999899988888887765322   23789999999999976521111111  1122222222 357888999998    


Q ss_pred             --CCHHHHHHHHHH
Q 028654          163 --FNVEAAFECIAK  174 (206)
Q Consensus       163 --~~i~~l~~~i~~  174 (206)
                        .|+++.|+||..
T Consensus       153 ~~~g~~~~~~wl~~  166 (167)
T cd04161         153 IDPSIVEGLRWLLA  166 (167)
T ss_pred             cccCHHHHHHHHhc
Confidence              899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=7e-27  Score=164.51  Aligned_cols=152  Identities=25%  Similarity=0.408  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-----CeEEEEEEeeCCCccccccccccceecCcE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      +||+++|.+|+|||||++++.++.+...+.++.+.++..+.+.+.     +..+.+.+|||+|++.+......+++.+|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888877776666663     467899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCC---------------CCCCCCcEEEEeeCCCCCCCCcceecHH----HHHH
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASP---------------SDPENFPFVVLGNKTDVDGGNSRVVSEK----KAKA  144 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~pviiv~nK~D~~~~~~~~~~~~----~~~~  144 (206)
                      +|+|||++++++++.+..|+..+......               ....+.|+++|+||.|+.+.  +....+    ....
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~  158 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF  158 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence            99999999999999999999998764311               12247899999999999754  222222    2334


Q ss_pred             HHHHcCCCcEEEeeccCCC
Q 028654          145 WCASKGNIPYFETSAKEGF  163 (206)
Q Consensus       145 ~~~~~~~~~~~~~s~~~~~  163 (206)
                      ++.+.+ ++.+..++.++.
T Consensus       159 ia~~~~-~~~i~~~c~~~~  176 (202)
T cd04102         159 VAEQGN-AEEINLNCTNGR  176 (202)
T ss_pred             HHHhcC-CceEEEecCCcc
Confidence            555565 788888887543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=2.9e-27  Score=161.70  Aligned_cols=153  Identities=19%  Similarity=0.349  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|.+|||||||++++.+..+ ....++.+...  ..+.+.  ...+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 33444444333  334443  3689999999999988888889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCCCCH
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFNV  165 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~i  165 (206)
                      +++++++.....|+..+.....   ..+.|+++|+||+|+....    ..+++......    ....+++++|+++|.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  148 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL  148 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence            9999888888888777765433   2378999999999987642    23333333221    23468999999999999


Q ss_pred             HHHHHHHHH
Q 028654          166 EAAFECIAK  174 (206)
Q Consensus       166 ~~l~~~i~~  174 (206)
                      +++|++|..
T Consensus       149 ~~~~~~l~~  157 (158)
T cd00878         149 DEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHhh
Confidence            999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.9e-27  Score=164.05  Aligned_cols=154  Identities=25%  Similarity=0.382  Sum_probs=114.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      +|+++|++|+|||||++++.+....      ..+.++.+...  ..+.++  ...+.+|||||+..+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            5899999999999999999764321      22333433333  334444  4788999999999998888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc------CCCcEEEe
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK------GNIPYFET  157 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  157 (206)
                      +++|+|+++.+++.....|+..+....   ...+.|+++++||+|+...    ...+++..+....      ...+++++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNE---ALEGVPLLILANKQDLPDA----LSVEEIKEVFQDKAEEIGRRDCLVLPV  149 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEEccccccC----CCHHHHHHHhccccccccCCceEEEEe
Confidence            999999999888887777777665432   1237899999999998653    2333444333221      23589999


Q ss_pred             eccCCCCHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAK  174 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~  174 (206)
                      ||++|.|+++++++|.+
T Consensus       150 Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         150 SALEGTGVREGIEWLVE  166 (167)
T ss_pred             eCCCCcCHHHHHHHHhc
Confidence            99999999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1.2e-26  Score=163.31  Aligned_cols=157  Identities=23%  Similarity=0.363  Sum_probs=120.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ...+|+++|++|||||||++++.+..+. .+.++.+..  ...+.+.+  ..+.+||+||+..+...+..+++.+|++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999987753 344554433  33444554  678899999998888888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc---------------CC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---------------GN  151 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---------------~~  151 (206)
                      |+|+++.+++.....|+..+.....   ..+.|+++++||+|+...    ...++++......               ..
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~---~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEE---LANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVSLKVSGIRP  165 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCcc---ccCCCEEEEEeCCCCCCC----cCHHHHHHHhCcccccccccccccccCcee
Confidence            9999998888877777777654322   236899999999998642    3445555544321               22


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHH
Q 028654          152 IPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ..++++||+++.|++++|++|.+.
T Consensus       166 ~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         166 IEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEEEEeEecCCCChHHHHHHHHhh
Confidence            468999999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=7.6e-27  Score=161.78  Aligned_cols=159  Identities=30%  Similarity=0.523  Sum_probs=123.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ....+|+++|+.|||||||++++..+... ...||.+..  ...+.+.+  ..+.+||.+|+..++..+..++..+|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            56799999999999999999999876533 345555443  44455555  67899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--H---cCCCcEEEeecc
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--S---KGNIPYFETSAK  160 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~s~~  160 (206)
                      ||+|.++.+.+......+..+.....   ..+.|++|++||.|+.+.    ...+++.....  .   ...+.++.+|+.
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~----~~~~~i~~~l~l~~l~~~~~~~v~~~sa~  159 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDA----MSEEEIKEYLGLEKLKNKRPWSVFSCSAK  159 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTS----STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred             EEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCc----chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence            99999998888777666666654322   237899999999998864    33344443322  1   234678999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028654          161 EGFNVEAAFECIAKNA  176 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~  176 (206)
                      +|+|+.+.++||.+.+
T Consensus       160 ~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  160 TGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcC
Confidence            9999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=1.9e-26  Score=161.23  Aligned_cols=158  Identities=19%  Similarity=0.305  Sum_probs=118.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|.+|+|||||++++.+..+. .+.++.+..  ...+.+.+  +.+.+||+||+..+...+..++..+|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            34589999999999999999999987654 233443332  22333433  78899999999988888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-----------cCCCcE
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------KGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  154 (206)
                      +|+|++++.++.....++..+....   ...+.|+++|+||+|+...    ...+++.....-           .....+
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i  162 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEV  162 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEE
Confidence            9999999888877777766655321   1237899999999998643    333444433211           123569


Q ss_pred             EEeeccCCCCHHHHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      +++||+++.|++++++||.++
T Consensus       163 ~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      163 FMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeecccCCChHHHHHHHHhh
Confidence            999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.95  E-value=6.3e-26  Score=156.58  Aligned_cols=157  Identities=17%  Similarity=0.113  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc---------ccccee
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---------GVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------~~~~~~   79 (206)
                      .+|+++|.+|+|||||+++|.+..+.....+..+.........+  ..+.+.+|||||.......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            37899999999999999999998765433333334443333333  3478999999997421110         001112


Q ss_pred             cCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           80 GADCCVLVYDVNVMKSF--DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      .+|++++|+|+++..++  .....|+..+....     .+.|+++|+||+|+....  ..  .....+... ...+++++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~--~~--~~~~~~~~~-~~~~~~~~  148 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFE--DL--SEIEEEEEL-EGEEVLKI  148 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchh--hH--HHHHHhhhh-ccCceEEE
Confidence            36899999999986543  44456666665432     267999999999997542  11  113344433 34789999


Q ss_pred             eccCCCCHHHHHHHHHHHHh
Q 028654          158 SAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ||+++.|++++++++.+.++
T Consensus       149 Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         149 STLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             EecccCCHHHHHHHHHHHhC
Confidence            99999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.95  E-value=2.7e-26  Score=156.69  Aligned_cols=154  Identities=27%  Similarity=0.465  Sum_probs=117.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEEC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV   90 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~   90 (206)
                      |+++|++|+|||||++++.+..+...+.++.+.....  +...+  +.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7899999999999999999998887777776655442  33333  7899999999999988888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH---HcCCCcEEEeeccCCCCHHH
Q 028654           91 NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---SKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ++..++.....|+..+....   ...+.|+++|+||+|+.....   ..+....+..   .....+++++|++++.|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  151 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKP---SLEGIPLLVLGNKNDLPGALS---VDELIEQMNLKSITDREVSCYSISCKEKTNIDI  151 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCCcC---HHHHHHHhCcccccCCceEEEEEEeccCCChHH
Confidence            99888877766666665422   123779999999999875421   1111111110   11236789999999999999


Q ss_pred             HHHHHHH
Q 028654          168 AFECIAK  174 (206)
Q Consensus       168 l~~~i~~  174 (206)
                      ++++|.+
T Consensus       152 l~~~l~~  158 (159)
T cd04159         152 VLDWLIK  158 (159)
T ss_pred             HHHHHhh
Confidence            9999975

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=7.6e-26  Score=147.42  Aligned_cols=166  Identities=21%  Similarity=0.380  Sum_probs=127.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ++++++|+++|..||||||++++|.+.+ .....|+.+  +..++..+.+  +.+.+||.+|+..+++.|..|+...|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            4568999999999999999999999887 444455554  4444555544  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecH--HHHHHHHHHcCCCcEEEeeccCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSE--KKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      |+|+|.+++..++.....+..+..   .....+.|+++++||.|+.+.-......  -+++++++... ++++.||+.+|
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tg  163 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTG  163 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEecccc
Confidence            999999998777665444444433   3333467999999999998542211111  23344545555 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 028654          163 FNVEAAFECIAKNALKN  179 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~  179 (206)
                      +++.+-++|+.+.+.++
T Consensus       164 e~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             ccHHHHHHHHHHHHHHH
Confidence            99999999999988873

>PTZ00099 rab6; Provisional

Probab=99.94  E-value=4.3e-25  Score=152.80  Aligned_cols=145  Identities=34%  Similarity=0.579  Sum_probs=124.7

Q ss_pred             CCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 028654           31 RKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA  110 (206)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~  110 (206)
                      +.|...+.+|.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|||++++++++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            34667788899888888888889999999999999999999999999999999999999999999999999999887653


Q ss_pred             CCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          111 SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       111 ~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      .    ++.|+++|+||+|+...  +.+..++...++...+ ..++++||++|.|++++|++|++.+++.+..
T Consensus        83 ~----~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 G----KDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             C----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            2    36799999999999754  4466777777777765 6899999999999999999999999875543

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.4e-25  Score=155.18  Aligned_cols=160  Identities=19%  Similarity=0.124  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----cccccccc---eecCc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d   82 (206)
                      +|+++|.+|+|||||+++|.+........+..+.......+.+.+ ...+.+|||||..+    .......+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999987654322223333333333333333 24789999999632    11222222   34599


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654           83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        83 ~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      ++++|+|+++. ++++.+..|...+......  ..+.|+++|+||+|+.+..   ...+....+.......+++++|+++
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~  155 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDEE---ELFELLKELLKELWGKPVFPISALT  155 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCch---hhHHHHHHHHhhCCCCCEEEEecCC
Confidence            99999999998 7888888888877665321  2267999999999987542   2233444444443347899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028654          162 GFNVEAAFECIAKN  175 (206)
Q Consensus       162 ~~~i~~l~~~i~~~  175 (206)
                      +.|+++++++|.+.
T Consensus       156 ~~gi~~l~~~i~~~  169 (170)
T cd01898         156 GEGLDELLRKLAEL  169 (170)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=1.9e-25  Score=168.13  Aligned_cols=168  Identities=17%  Similarity=0.134  Sum_probs=123.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------cccccccceec
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   80 (206)
                      ...|+++|.|+||||||++++.+........+.+|.......+.+.+ ...+.+||+||..+       +...+...+..
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            45789999999999999999998765545556666666666665532 24689999999532       11222234567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      ++++++|+|+++.++++.+..|..++..+...  ..+.|+++|+||+|+.+.  .....+..+.+....+ .+++++||+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSAk  311 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISAV  311 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            99999999999877888888898888765321  126799999999999754  2222333444444443 789999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCC
Q 028654          161 EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +++|+++++++|.+.+.+.+.
T Consensus       312 tg~GI~eL~~~L~~~l~~~~~  332 (335)
T PRK12299        312 TGEGLDELLRALWELLEEARR  332 (335)
T ss_pred             CCCCHHHHHHHHHHHHHhhhc
Confidence            999999999999998876443

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.3e-25  Score=156.54  Aligned_cols=155  Identities=19%  Similarity=0.261  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccc------cceeeEEEE--EEe---CCeEEEEEEeeCCCccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK-------FSNQYKAT------IGADFLTKE--VQF---EDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~------~~~~~~~~~--~~~---~~~~~~~~i~D~~G~~~~~   71 (206)
                      +|+++|.+++|||||+++|++..       +...+.++      .+.+.....  ..+   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            78999999999999999998742       11111111      122222222  222   5567889999999999998


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-  150 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  150 (206)
                      ..+..++..+|++|+|+|+++..+......|.... .       .++|+++|+||+|+.+..    ..+....+....+ 
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~-------~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~  149 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E-------NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL  149 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H-------cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence            88888999999999999999866655555553322 1       167999999999986431    1222334444433 


Q ss_pred             -CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          151 -NIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       151 -~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                       ...++++||++|.|+++++++|.+.+
T Consensus       150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         150 DPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence             13589999999999999999999875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04171 SelB SelB subfamily

Probab=99.94  E-value=1.1e-25  Score=154.74  Aligned_cols=154  Identities=21%  Similarity=0.189  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .|+++|.+|+|||||+++|.+..   +.....++.+.......+.+.+ ...+.+|||||++.+......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            58999999999999999998643   2223334444444444444442 3588999999999887777777889999999


Q ss_pred             EEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc--CCCcEEEeeccC
Q 028654           87 VYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKE  161 (206)
Q Consensus        87 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~  161 (206)
                      |+|+++   .++.+.+    ..+ ....     ..|+++|+||+|+..........+++..+....  ...+++++|+++
T Consensus        81 V~d~~~~~~~~~~~~~----~~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (164)
T cd04171          81 VVAADEGIMPQTREHL----EIL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT  150 (164)
T ss_pred             EEECCCCccHhHHHHH----HHH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence            999986   2222222    111 1111     238999999999975321122233444444332  347899999999


Q ss_pred             CCCHHHHHHHHHH
Q 028654          162 GFNVEAAFECIAK  174 (206)
Q Consensus       162 ~~~i~~l~~~i~~  174 (206)
                      +.|++++++.+.+
T Consensus       151 ~~~v~~l~~~l~~  163 (164)
T cd04171         151 GEGIEELKEYLDE  163 (164)
T ss_pred             CcCHHHHHHHHhh
Confidence            9999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=8.8e-26  Score=156.62  Aligned_cols=158  Identities=23%  Similarity=0.365  Sum_probs=114.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|++|+|||||++++.+..+. ...++.+..  ...+...+  ..+.+||+||+..+...+..+++.+|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345789999999999999999999987653 234444432  23344444  6789999999988888888888999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----CCCcEEEeecc
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~  160 (206)
                      ++|+|+++..++.....++..+.....   ..++|+++++||+|+....    ..+++.......    ...+++++||+
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~  158 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAK  158 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECC
Confidence            999999998888777766666654322   2268999999999986532    122222211111    11357899999


Q ss_pred             CCCCHHHHHHHHHH
Q 028654          161 EGFNVEAAFECIAK  174 (206)
Q Consensus       161 ~~~~i~~l~~~i~~  174 (206)
                      +|.|++++|+||.+
T Consensus       159 ~~~gi~~~~~~l~~  172 (173)
T cd04155         159 TGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=3.5e-25  Score=163.14  Aligned_cols=145  Identities=28%  Similarity=0.519  Sum_probs=120.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-------------CeEEEEEEeeCCCcccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-------------DRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~~   72 (206)
                      ...+||+++|..|+|||||+++|.++.+...+.++.+.++....+.++             +..+.+.||||+|++.+..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            356899999999999999999999998888888898888777766664             2468899999999999999


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--------CCCCCcEEEEeeCCCCCCCCc-ce---ecHH
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPS--------DPENFPFVVLGNKTDVDGGNS-RV---VSEK  140 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~pviiv~nK~D~~~~~~-~~---~~~~  140 (206)
                      ++..+++.++++|+|||+++.++++.+..|+..+.......        ...++|++||+||+|+..... +.   +..+
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e  178 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD  178 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence            99999999999999999999999999999999998764210        112589999999999975422 12   3678


Q ss_pred             HHHHHHHHcC
Q 028654          141 KAKAWCASKG  150 (206)
Q Consensus       141 ~~~~~~~~~~  150 (206)
                      +.+.++...+
T Consensus       179 ~a~~~A~~~g  188 (334)
T PLN00023        179 AARQWVEKQG  188 (334)
T ss_pred             HHHHHHHHcC
Confidence            8999988765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.4e-24  Score=148.14  Aligned_cols=158  Identities=25%  Similarity=0.536  Sum_probs=124.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|.+|+|||||++++....+...+.++.+.+.....+...+..+.+.+||+||+..+........+.++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            36999999999999999999999887777777887777777677777678899999999988888888888889999999


Q ss_pred             EECCCh-hhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           88 YDVNVM-KSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        88 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|.... .++.... .|...+......    +.|+++++||.|+....    ..+.........+..+++++||+++.|+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv  152 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNI  152 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCH
Confidence            998775 5555543 666666555432    67999999999997542    2333333444444578999999999999


Q ss_pred             HHHHHHHH
Q 028654          166 EAAFECIA  173 (206)
Q Consensus       166 ~~l~~~i~  173 (206)
                      .+++++|.
T Consensus       153 ~~~~~~l~  160 (161)
T TIGR00231       153 DSAFKIVE  160 (161)
T ss_pred             HHHHHHhh
Confidence            99999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=5.9e-25  Score=162.25  Aligned_cols=159  Identities=19%  Similarity=0.093  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------ccccceec
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG   80 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~   80 (206)
                      +|+++|.+|+|||||+|+|.+..+. ....+.++...........+  .++.||||||......        ....++..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            5899999999999999999998754 23333333333222222222  4789999999643211        12345688


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|+++..+..  ..++..+..       .+.|+++|+||+|+...   ....+....+....+..+++++||+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~  147 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL  147 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence            99999999999865543  233333322       16799999999999742   2223344444444444589999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +|.|+++++++|.+.+++.++.
T Consensus       148 ~g~gi~~L~~~l~~~l~~~~~~  169 (270)
T TIGR00436       148 TGDNTSFLAAFIEVHLPEGPFR  169 (270)
T ss_pred             CCCCHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999887764

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=6.2e-25  Score=156.25  Aligned_cols=158  Identities=18%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-ccc-------cccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSL-------GVAF   77 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~-------~~~~   77 (206)
                      ...++|+++|++|||||||++++.+..+.....+..+.......+.+.+. ..+.+|||||.... ...       ....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            44689999999999999999999988654333333334444444444442 37889999996321 110       1122


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.+......|...+.....    .+.|+++|+||+|+.+...  .  .   ..... ...+++++
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~----~~~~viiV~NK~Dl~~~~~--~--~---~~~~~-~~~~~~~~  185 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGA----EDIPMILVLNKIDLLDDEE--L--E---ERLEA-GRPDAVFI  185 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc----CCCCEEEEEEccccCChHH--H--H---HHhhc-CCCceEEE
Confidence            5679999999999988877776666665543321    2679999999999976421  1  1   22222 34789999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~  176 (206)
                      ||+++.|+++++++|.+.+
T Consensus       186 Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         186 SAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             EcCCCCCHHHHHHHHHhhC
Confidence            9999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=2e-25  Score=149.20  Aligned_cols=148  Identities=18%  Similarity=0.264  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------cccccce--ec
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--RG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--~~   80 (206)
                      ++|+++|.||+|||||+|+|++........|++|.+.....+.+.+  ..+.++|+||...+.      .....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999987666778888888777787777  677889999932222      1222333  57


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      .|++++|+|+++.+.-.   ++..++...       ++|+++++||+|...........+.+.   +..+ ++++++||.
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg-~pvi~~sa~  144 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLEL-------GIPVVVVLNKMDEAERKGIEIDAEKLS---ERLG-VPVIPVSAR  144 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHHT-------TSSEEEEEETHHHHHHTTEEE-HHHHH---HHHT-S-EEEEBTT
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHHc-------CCCEEEEEeCHHHHHHcCCEECHHHHH---HHhC-CCEEEEEeC
Confidence            99999999998744222   233333322       789999999999887654555444444   4455 899999999


Q ss_pred             CCCCHHHHHHHH
Q 028654          161 EGFNVEAAFECI  172 (206)
Q Consensus       161 ~~~~i~~l~~~i  172 (206)
                      ++.|++++++.|
T Consensus       145 ~~~g~~~L~~~I  156 (156)
T PF02421_consen  145 TGEGIDELKDAI  156 (156)
T ss_dssp             TTBTHHHHHHHH
T ss_pred             CCcCHHHHHhhC
Confidence            999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=2.8e-25  Score=149.24  Aligned_cols=135  Identities=26%  Similarity=0.341  Sum_probs=97.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc-----ccccccccceecCcEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC   84 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~v   84 (206)
                      ||+++|++|+|||||+++|.+..+.  +.++.+       +.+..     .+|||||..     .+.... ..++.+|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999887642  222221       11221     589999972     233322 347899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++.. ..|...+          ..|+++|+||+|+.+   .....+....++...+..+++++||+++.|
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  132 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAE---ADVDIERAKELLETAGAEPIFEISSVDEQG  132 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCC---cccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            99999999887654 2333211          238999999999864   234456667777666645899999999999


Q ss_pred             HHHHHHHHH
Q 028654          165 VEAAFECIA  173 (206)
Q Consensus       165 i~~l~~~i~  173 (206)
                      ++++|+++.
T Consensus       133 i~~l~~~l~  141 (142)
T TIGR02528       133 LEALVDYLN  141 (142)
T ss_pred             HHHHHHHHh
Confidence            999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.93  E-value=9e-27  Score=154.01  Aligned_cols=168  Identities=30%  Similarity=0.537  Sum_probs=154.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .-++++++|..++||||++.+++.+-|...+..+.+.++....+.+.+..+.+.+||++|+++++.....|++.+.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            36899999999999999999999999999999999999988888888888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      ||+.++..+|+.+..|...+.....     .+|.++|-||+|+.++  .+...++.+-+++... ..++.+|+++..|+.
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~NV~  170 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVM  170 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhhhH
Confidence            9999999999999999999987765     8899999999999987  6788888888888887 889999999999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 028654          167 AAFECIAKNALKNEPQ  182 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~~  182 (206)
                      .+|..+++.+.++..+
T Consensus       171 ~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  171 HVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988765544

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=4.7e-24  Score=161.60  Aligned_cols=164  Identities=24%  Similarity=0.300  Sum_probs=112.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-cccc-------cc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLG-------VA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~-------~~   76 (206)
                      ...++|+++|.+|+|||||+|+|.+..+.. ...+.++.......+...+  .++.||||||..+. ....       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456799999999999999999999887642 2233333344444445544  57899999997432 2111       12


Q ss_pred             ceecCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-CCcE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPY  154 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (206)
                      .+..+|++++|+|..+  ++.... .|+..+...       +.|+++|+||+|+...     ..+++..+..... ...+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-------~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~i  193 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-------NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSLL  193 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-------CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcEE
Confidence            4678999999999765  333332 333333221       4578899999998642     1344444444332 4679


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCCCCCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEPQEED  185 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~  185 (206)
                      +++||++|.|+++++++|.+.+++.++..++
T Consensus       194 ~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~  224 (339)
T PRK15494        194 FPISALSGKNIDGLLEYITSKAKISPWLYAE  224 (339)
T ss_pred             EEEeccCccCHHHHHHHHHHhCCCCCCCCCC
Confidence            9999999999999999999999988887444

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.93  E-value=2.6e-24  Score=148.47  Aligned_cols=159  Identities=22%  Similarity=0.220  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      .|+++|.+|+|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887765544444444433444433 13568899999999888887788889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-----cCCCcEEEeeccCCC
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----KGNIPYFETSAKEGF  163 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~  163 (206)
                      |+++........ .+..+..       .+.|+++|+||+|+...... ...+....+...     ....+++++|++++.
T Consensus        82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  152 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGE  152 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence            998743222211 1122211       16799999999998753211 111122222111     123689999999999


Q ss_pred             CHHHHHHHHHHHHh
Q 028654          164 NVEAAFECIAKNAL  177 (206)
Q Consensus       164 ~i~~l~~~i~~~~~  177 (206)
                      |+++++++|.+...
T Consensus       153 gi~~l~~~l~~~~~  166 (168)
T cd01887         153 GIDDLLEAILLLAE  166 (168)
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999988654

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=4.6e-24  Score=145.75  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=107.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc------cccce--ecCcEE
Q 028654           13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCC   84 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~v   84 (206)
                      ++|.+|+|||||++++.+..+.....++++.......+.+.+  ..+.+|||||+..+...      ...++  +.+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            579999999999999998865555556666666666666665  57899999998765532      34444  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|+++.+...   .+...+...       +.|+++|+||+|+.....  . ......+....+ .+++++|+.++.|
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~~-------~~~~iiv~NK~Dl~~~~~--~-~~~~~~~~~~~~-~~~~~iSa~~~~~  144 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLEL-------GLPVVVALNMIDEAEKRG--I-KIDLDKLSELLG-VPVVPTSARKGEG  144 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHHc-------CCCEEEEEehhhhccccc--c-hhhHHHHHHhhC-CCeEEEEccCCCC
Confidence            9999998754422   333333221       679999999999976421  2 223345555555 7899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028654          165 VEAAFECIAKNA  176 (206)
Q Consensus       165 i~~l~~~i~~~~  176 (206)
                      ++++++++.+.+
T Consensus       145 ~~~l~~~l~~~~  156 (158)
T cd01879         145 IDELKDAIAELA  156 (158)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998863

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.92  E-value=2.4e-25  Score=142.50  Aligned_cols=163  Identities=23%  Similarity=0.394  Sum_probs=127.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +..+.++|..+||||||+|.+..+.+...-.|+.+....    .++...+.+.+||.||+..++.++..|.+.+++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            467889999999999999999998888877888775443    4555668999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|+++++.++....-++.++....   ..++|+++.+||.|++++-......++.-...-....+.++.+|+++..+++-
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~---l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPS---LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchh---hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            999998887766554454443332   33889999999999988643333332222222223347799999999999999


Q ss_pred             HHHHHHHHHh
Q 028654          168 AFECIAKNAL  177 (206)
Q Consensus       168 l~~~i~~~~~  177 (206)
                      +.+||++...
T Consensus       173 ~~~Wli~hsk  182 (186)
T KOG0075|consen  173 TLDWLIEHSK  182 (186)
T ss_pred             HHHHHHHHhh
Confidence            9999998654

>cd01889 SelB_euk SelB subfamily

Probab=99.92  E-value=2.3e-24  Score=151.84  Aligned_cols=162  Identities=19%  Similarity=0.101  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC----CCC---CCcccccceeeEEEEEEeC------------CeEEEEEEeeCCCccc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR----KFS---NQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~   69 (206)
                      ++|+++|++++|||||+++|++.    .+.   ....++.+.........+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999873    111   2222333333333333332            2357889999999876


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S  148 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~  148 (206)
                      +........+.+|++++|+|+++.........+.  +....      +.|+++|+||+|+..........+++..... .
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~  152 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL------CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT  152 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence            6554445566789999999998744333322221  11111      5699999999999754222222333332211 1


Q ss_pred             -----cCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          149 -----KGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       149 -----~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                           ...++++++||+++.|++++++++.+.++.
T Consensus       153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence                 234789999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG1159 Era GTPase [General function prediction only]

Probab=99.92  E-value=2.6e-24  Score=154.56  Aligned_cols=168  Identities=19%  Similarity=0.102  Sum_probs=117.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------cccccccce
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY   78 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   78 (206)
                      ..--|+++|.||+|||||+|++.+....-......|+......+... ...++.|+||||-..        +.......+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            45578999999999999999999998773333333333333333222 357999999999322        223334567


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      +.+|+++||+|++..-..  ...+..+..+.      .+.|+++++||+|.....  .........+........++++|
T Consensus        84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~------~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          84 KDVDLILFVVDADEGWGP--GDEFILEQLKK------TKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             ccCcEEEEEEeccccCCc--cHHHHHHHHhh------cCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceEEEee
Confidence            889999999999863322  22332222222      167999999999998752  22234444555556667999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCCC
Q 028654          159 AKEGFNVEAAFECIAKNALKNEPQEED  185 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~~~~~~  185 (206)
                      |++|.|++.|.+.+...+++.++..++
T Consensus       154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~  180 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYLPEGPWYYPE  180 (298)
T ss_pred             ccccCCHHHHHHHHHHhCCCCCCcCCh
Confidence            999999999999999999999888443

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=9.2e-24  Score=158.88  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=116.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc----cccccc---eec
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAF---YRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~---~~~   80 (206)
                      ...|+++|.+++|||||++++.+........+.++.......+.+.+ ...+.+||+||..+..    .+...+   +..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            45789999999999999999998765444445555555555555543 3578999999964321    222233   456


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           81 ADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        81 ~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++++++|+|+++.   ++++.+..|..++..+...  ..+.|+++|+||+|+.+.   ....+..+.+....+ .+++++
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~---~~~~~~~~~l~~~~~-~~vi~i  309 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDE---EELAELLKELKKALG-KPVFPI  309 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCCh---HHHHHHHHHHHHHcC-CcEEEE
Confidence            9999999999976   6777778887777655321  126799999999999754   122334444554444 789999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~  176 (206)
                      ||++++|+++++++|.+.+
T Consensus       310 SAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       310 SALTGEGLDELLYALAELL  328 (329)
T ss_pred             EccCCcCHHHHHHHHHHHh
Confidence            9999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.4e-23  Score=149.64  Aligned_cols=171  Identities=35%  Similarity=0.523  Sum_probs=134.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|++|+|||||+++|.+..+...+.++.+..+........+..+.+.+|||+|+++++..+..++..++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999988888887776666666555557889999999999999999999999999999


Q ss_pred             EEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc----------eecHHHHHHHHHHc--CCCc
Q 028654           87 VYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR----------VVSEKKAKAWCASK--GNIP  153 (206)
Q Consensus        87 v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~--~~~~  153 (206)
                      ++|..+ ....+....|...+.....    .+.|+++|+||+|+......          ....+.........  ....
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPA  159 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccc
Confidence            999998 5555666888888876653    26799999999999875321          12222222222222  2234


Q ss_pred             EEEeecc--CCCCHHHHHHHHHHHHhhcCC
Q 028654          154 YFETSAK--EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       154 ~~~~s~~--~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ++.+|++  .+.++.++|..+...+.+...
T Consensus       160 ~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         160 LLETSAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             eeEeecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            8999999  999999999999998875443

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=6.4e-24  Score=149.82  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCCCCc------------ccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN--RKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   74 (206)
                      .+|+++|.+++|||||+++|+.  ..+....            ..+.+.+.......+......+.+|||||++++...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            5899999999999999999997  3433221            1122333333333444455789999999999999888


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-----
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-----  149 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-----  149 (206)
                      ..+++.+|++++|+|+++.. ......++..+..       .++|+++|+||+|+.... .....+++..+....     
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~  153 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE  153 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence            99999999999999998732 1222233332221       167999999999997532 112233444443221     


Q ss_pred             -CCCcEEEeeccCCCCHHHH------HHHHHHHHhhc
Q 028654          150 -GNIPYFETSAKEGFNVEAA------FECIAKNALKN  179 (206)
Q Consensus       150 -~~~~~~~~s~~~~~~i~~l------~~~i~~~~~~~  179 (206)
                       ...+++++||++|.|+.++      ++++++.+.+.
T Consensus       154 ~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~  190 (194)
T cd01891         154 QLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH  190 (194)
T ss_pred             cCccCEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence             1478999999999776432      44444444443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=2.8e-23  Score=140.58  Aligned_cols=156  Identities=47%  Similarity=0.789  Sum_probs=116.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECC
Q 028654           13 ILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                      ++|++|+|||||++++.+... .....++. ................+.+||+||...+.......++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            579999999999999998876 34444444 6666666666677789999999998888777788889999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHH
Q 028654           92 VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC  171 (206)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~  171 (206)
                      ++.+......|........   ...+.|+++|+||+|+.....  ................+++++|+.++.|+++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~---~~~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  154 (157)
T cd00882          80 DRESFENVKEWLLLILINK---EGENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFEE  154 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhh---ccCCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence            9888887776632222211   223789999999999876422  11111122333444589999999999999999999


Q ss_pred             HHH
Q 028654          172 IAK  174 (206)
Q Consensus       172 i~~  174 (206)
                      |.+
T Consensus       155 l~~  157 (157)
T cd00882         155 LAE  157 (157)
T ss_pred             HhC
Confidence            863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=5.2e-24  Score=142.36  Aligned_cols=166  Identities=19%  Similarity=0.332  Sum_probs=127.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ..+.+|+++|-.++||||++.+|-...+... .||.+......  .+.  ++.+++||.+|++.++..+..|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v--~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETV--EYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEE--EEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            4578999999999999999999877765443 66666555443  444  589999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ||+|.++++.+..+..-+..+.   ......+.|+++.+||.|++++....+..+.+.........+.+..++|.+|+|+
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL  166 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL  166 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence            9999999988877665545444   3444558899999999999987443332222222222223477888999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 028654          166 EAAFECIAKNALKN  179 (206)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (206)
                      .+.++|+.+.+...
T Consensus       167 ~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  167 YEGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987653

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=9e-24  Score=148.43  Aligned_cols=158  Identities=22%  Similarity=0.150  Sum_probs=111.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCccc----------------ccceeeEEEEEEeCCeEEEEEEeeCCCccccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   73 (206)
                      +|+++|.+|+|||||+++|.+.........                +.+...........  ...+.+|||||...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            489999999999999999998766543311                12222222222333  468899999999888888


Q ss_pred             cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----
Q 028654           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----  149 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----  149 (206)
                      +..++..+|++++|+|+++...... ..++..+..       .+.|+++|+||+|+..........+.+.......    
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS  150 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence            8888899999999999987654332 233333322       2679999999999986322233333444333321    


Q ss_pred             ---------CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          150 ---------GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       150 ---------~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                               ...+++++|++++.|+++++++|.+.++
T Consensus       151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence                     2478999999999999999999999864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=2e-23  Score=158.35  Aligned_cols=154  Identities=20%  Similarity=0.200  Sum_probs=110.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc---------ccccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~   77 (206)
                      ..++|+++|.+|+|||||+|+|++........++++.+.....+.+.+. ..+.+|||+|..         .+.. ....
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence            4589999999999999999999998754444555566666777766432 478899999962         1222 1224


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.+......|...+....    ..+.|+++|+||+|+...  .     .......  ...+++++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~----~~~~piIlV~NK~Dl~~~--~-----~v~~~~~--~~~~~i~i  332 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELG----AEDIPQLLVYNKIDLLDE--P-----RIERLEE--GYPEAVFV  332 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc----cCCCCEEEEEEeecCCCh--H-----hHHHHHh--CCCCEEEE
Confidence            678999999999999887776665555444332    126799999999999642  1     1111111  12468999


Q ss_pred             eccCCCCHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~  175 (206)
                      ||+++.|+++++++|.+.
T Consensus       333 SAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       333 SAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             EccCCCCHHHHHHHHHhh
Confidence            999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.91  E-value=1.7e-23  Score=168.13  Aligned_cols=181  Identities=20%  Similarity=0.200  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +.|+++|+.++|||||+++|.+..   +..+..++.+.+.....+.+.+  ..+.+||+||++.|...+...+..+|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            368999999999999999999743   3344455666666555566655  78899999999999888888899999999


Q ss_pred             EEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcC---CCcEEEee
Q 028654           86 LVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG---NIPYFETS  158 (206)
Q Consensus        86 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s  158 (206)
                      +|+|+++.   .+.+.+    ..+ ...      ++| +++|+||+|+.+........+++..+....+   +.+++++|
T Consensus        79 LVVDa~~G~~~qT~ehl----~il-~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS  147 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVL-DLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS  147 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHH-HHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence            99999873   333332    111 111      567 9999999999764222223445555555432   47899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCC
Q 028654          159 AKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSG  203 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (206)
                      +++|.|+++++..|.+.+....+.. ...|-.+.+...++.++.|
T Consensus       148 A~tG~GI~eL~~~L~~l~~~~~~~~-~~~p~r~~Id~~f~v~G~G  191 (581)
T TIGR00475       148 AKTGQGIGELKKELKNLLESLDIKR-IQKPLRMAIDRAFKVKGAG  191 (581)
T ss_pred             CCCCCCchhHHHHHHHHHHhCCCcC-cCCCcEEEEEEEEecCCcE
Confidence            9999999999999988765544322 2233334444444444444

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=147.81  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=102.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC-----------ccccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSL   73 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~   73 (206)
                      +...++|+++|.+|+|||||+|+|.+..+.....++.+..  ...+.+.    .+.+|||||           ++.+...
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE   79 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence            3456899999999999999999999887655555544333  2233222    588999999           3444444


Q ss_pred             cccce----ecCcEEEEEEECCChhhHHHHHHHH--------HHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH
Q 028654           74 GVAFY----RGADCCVLVYDVNVMKSFDNLNNWR--------EEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK  141 (206)
Q Consensus        74 ~~~~~----~~~d~vi~v~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~  141 (206)
                      +..++    ..++++++|+|.++...+.  ..|.        ..+......   .+.|+++|+||+|+.+..     .+.
T Consensus        80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~-----~~~  149 (201)
T PRK04213         80 IVRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR-----DEV  149 (201)
T ss_pred             HHHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH-----HHH
Confidence            44443    3467889999986532210  1110        011111111   178999999999997542     233


Q ss_pred             HHHHHHHcCC--------CcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          142 AKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       142 ~~~~~~~~~~--------~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ...+....+.        .+++++||++| |+++++++|.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~  194 (201)
T PRK04213        150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA  194 (201)
T ss_pred             HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence            3444444331        25899999999 9999999999987543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=2.8e-23  Score=164.18  Aligned_cols=161  Identities=23%  Similarity=0.210  Sum_probs=113.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccc-
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLG-   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-   74 (206)
                      ..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.+++.  .+.+|||||...          +.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4689999999999999999999988653 445566666666666667664  457999999522          21111 


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+++.+|++++|+|+++..+..... ++..+..       .+.|+++|+||+|+.+........+++..........++
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  359 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR  359 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence            23568899999999999887776653 3333322       277999999999997532212222223222222334789


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHh
Q 028654          155 FETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      +++||++|.|++++|+.+.+.+.
T Consensus       360 ~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        360 VNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998764

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=5.6e-23  Score=157.61  Aligned_cols=168  Identities=17%  Similarity=0.060  Sum_probs=120.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-------ccccccceecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~   81 (206)
                      ..|+++|.||+|||||+|+|++........+.+|.......+.+.+ ...+.|+||||..+-       .......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            4789999999999999999998765555566666666666665543 235889999995431       11222346789


Q ss_pred             cEEEEEEECC---ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEe
Q 028654           82 DCCVLVYDVN---VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET  157 (206)
Q Consensus        82 d~vi~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      +++++|+|++   ..+.++....|+.++..+...  ..+.|+++|+||+|+...   ....+.+..+....+. .+++++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~---~el~~~l~~l~~~~~~~~~Vi~I  313 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDE---EEAEERAKAIVEALGWEGPVYLI  313 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCCh---HHHHHHHHHHHHHhCCCCCEEEE
Confidence            9999999988   445666667777777654321  125799999999998653   2223444445444332 378999


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ||+++.|+++++++|.+.+.+.++.
T Consensus       314 SA~tg~GIdeLl~~I~~~L~~~~~~  338 (390)
T PRK12298        314 SAASGLGVKELCWDLMTFIEENPRE  338 (390)
T ss_pred             ECCCCcCHHHHHHHHHHHhhhCccc
Confidence            9999999999999999999887664

>PRK00089 era GTPase Era; Reviewed

Probab=99.91  E-value=6.1e-23  Score=153.48  Aligned_cols=163  Identities=20%  Similarity=0.142  Sum_probs=109.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc--------cccccce
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFY   78 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~   78 (206)
                      .-.|+++|++|||||||+|+|++..+.. ...+.++..........  ...++.++||||.....        ......+
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            4568999999999999999999887642 22232222222222222  23689999999954322        2233456


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|++++|+|+++.... ....+...+.    .   .+.|+++|+||+|+...  .....+....+....+..+++++|
T Consensus        83 ~~~D~il~vvd~~~~~~~-~~~~i~~~l~----~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~iS  152 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGP-GDEFILEKLK----K---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPIS  152 (292)
T ss_pred             hcCCEEEEEEeCCCCCCh-hHHHHHHHHh----h---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEec
Confidence            789999999999873221 1122222222    1   16799999999999743  233444555555555567899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          159 AKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      |+++.|+++++++|.+.+++.++.
T Consensus       153 A~~~~gv~~L~~~L~~~l~~~~~~  176 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYLPEGPPY  176 (292)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCC
Confidence            999999999999999998876654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=6.1e-23  Score=162.25  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=109.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------cccccccce
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY   78 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   78 (206)
                      ..+|+++|.+|+|||||+|+|++.... ....++.+.+.......+.+  ..+.+|||||.+.        +......++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            468999999999999999999987643 34455555555555555555  4578999999652        233345567


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      +.+|++|+|+|+++..+... ..+...+..       .+.|+++|+||+|+....     .+..+.+.  .+...++++|
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~~~~~~~--~g~~~~~~iS  180 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----ADAAALWS--LGLGEPHPVS  180 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hhhHHHHh--cCCCCeEEEE
Confidence            89999999999998655433 233333322       178999999999986421     11222222  2223457999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhc
Q 028654          159 AKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      |++|.|+++++++|++.+.+.
T Consensus       181 A~~g~gi~eL~~~i~~~l~~~  201 (472)
T PRK03003        181 ALHGRGVGDLLDAVLAALPEV  201 (472)
T ss_pred             cCCCCCcHHHHHHHHhhcccc
Confidence            999999999999999988663

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=1.2e-22  Score=138.55  Aligned_cols=146  Identities=24%  Similarity=0.304  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------ccccee
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~   79 (206)
                      ++|+++|++|+|||||++++.+.... ....++++.......+...+  ..+.+|||||..++...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 22334444444444444443  57889999996554322        224567


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      .+|++++|+|++++.+......+..          ..+.|+++|+||+|+......         . ......+++++|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~-~~~~~~~~~~~Sa  139 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------L-SLLAGKPIIAISA  139 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------c-cccCCCceEEEEC
Confidence            8999999999998776665443322          126799999999999764221         1 2223478999999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028654          160 KEGFNVEAAFECIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~  176 (206)
                      +++.|+++++++|.+.+
T Consensus       140 ~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         140 KTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence            99999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.4e-22  Score=158.13  Aligned_cols=167  Identities=19%  Similarity=0.118  Sum_probs=116.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceec
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~   80 (206)
                      ...|+++|.+|+|||||+|+|.+........+.+|.......+.+.+  ..+.+||+||.....       ......+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            46899999999999999999998765544556666666666666655  578999999943211       112234567


Q ss_pred             CcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCC-------CCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc
Q 028654           81 ADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPS-------DPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (206)
Q Consensus        81 ~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      +|++++|+|+++.    +.+..+..+..++..+....       ...+.|+++|+||+|+.+.  . ...+.+.......
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~-el~e~l~~~l~~~  313 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--R-ELAEFVRPELEAR  313 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--H-HHHHHHHHHHHHc
Confidence            9999999999853    34555556666665543210       1236799999999999753  1 1222333333333


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      + ++++++||+++.|+++++.+|.+.+.+.+
T Consensus       314 g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        314 G-WPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             C-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            3 78999999999999999999999876654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.91  E-value=4.2e-23  Score=146.41  Aligned_cols=164  Identities=14%  Similarity=0.144  Sum_probs=103.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC---CCCcccccceeeEEEEEEeC---------------------------C----
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQFE---------------------------D----   54 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   54 (206)
                      ++|+++|+.|+|||||+.++.+...   ........+.........+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999976421   11111111111111111110                           0    


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  134 (206)
                      ....+.||||||++.+...+...+..+|++++|+|++++.........+..+. ...     ..|+++|+||+|+.....
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~-----~~~iiivvNK~Dl~~~~~  154 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG-----LKHIIIVQNKIDLVKEEQ  154 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC-----CCcEEEEEEchhccCHHH
Confidence            12678999999999888888888889999999999986311111111112221 111     237999999999975322


Q ss_pred             ceecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          135 RVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      .....+.+..+....  ...+++++||+++.|+++++++|.+.+++
T Consensus       155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            222233444444332  24789999999999999999999987765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=2.5e-22  Score=154.87  Aligned_cols=163  Identities=19%  Similarity=0.165  Sum_probs=117.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc----ccccccc---eecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVAF---YRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~   81 (206)
                      ..|+++|.+++|||||++++++........+.+|.......+.+.. ...+.+||+||..+.    ..+...+   +..+
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            4889999999999999999998765444455555555555555441 357899999995321    1222333   4568


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        82 d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      +++++|+|+++.   ++++....|..++..+...  ..++|++||+||+|+...      .+.++.+....+ .+++++|
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~iS  308 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPIS  308 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEEe
Confidence            999999999864   5667777777777665321  226799999999998432      234455555555 7899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCC
Q 028654          159 AKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      |+++.|+++++++|.+.+.+.++
T Consensus       309 A~tgeGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        309 ALTGQGLDELLYAVAELLEETPE  331 (424)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999998876654

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.90  E-value=1.4e-22  Score=163.03  Aligned_cols=161  Identities=18%  Similarity=0.228  Sum_probs=114.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-------CCCccc------ccceeeEEE--EEEe---CCeEEEEEEeeCCCccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKA------TIGADFLTK--EVQF---EDRLFTLQIWDTAGQER   69 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~-------~~~~~~------~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~~   69 (206)
                      ..+++++|+.++|||||+++|+....       ...+..      ..+.++...  .+.+   ++..+.+.||||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            56899999999999999999986421       111111      113333332  2333   45668999999999999


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      +...+..++..+|++|+|+|+++..+.+....|...+.        .+.|+++|+||+|+....    ..+...++....
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~----~~~~~~el~~~l  150 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD----PERVKKEIEEVI  150 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC----HHHHHHHHHHHh
Confidence            99888999999999999999998666665555544331        167999999999986532    122223333333


Q ss_pred             C--CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          150 G--NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       150 ~--~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +  ...++++||++|.|+++++++|.+.++...
T Consensus       151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       151 GLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             CCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            3  125899999999999999999999886543

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.90  E-value=5e-23  Score=155.74  Aligned_cols=175  Identities=19%  Similarity=0.207  Sum_probs=124.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------cccccccce
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   78 (206)
                      ..|+++|.||+|||||+|+|++.... .+..|++|.+.......+.+.  .+.++||+|-+.         .......++
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998765 566777777777777777774  488899999442         223345567


Q ss_pred             ecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           79 RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ..||++|||+|....-+..+  +.+|+...          ++|+++|+||+|....       +....-.-+.+...+++
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr~~----------~kpviLvvNK~D~~~~-------e~~~~efyslG~g~~~~  144 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILRRS----------KKPVILVVNKIDNLKA-------EELAYEFYSLGFGEPVP  144 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHHhc----------CCCEEEEEEcccCchh-------hhhHHHHHhcCCCCceE
Confidence            88999999999986433322  33333311          6899999999997532       22222223455578899


Q ss_pred             eeccCCCCHHHHHHHHHHHHh-hcCCCCCC-CCCccccCCCCCccCCC
Q 028654          157 TSAKEGFNVEAAFECIAKNAL-KNEPQEED-YLPDTIDVGGGQQQRSS  202 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~  202 (206)
                      +||.+|.|+.+|++++++.++ .....+++ .-+-.+.+-++.+..||
T Consensus       145 ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKS  192 (444)
T COG1160         145 ISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKS  192 (444)
T ss_pred             eehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCch
Confidence            999999999999999999985 22222222 24556666666666554

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=2.1e-22  Score=161.33  Aligned_cols=155  Identities=23%  Similarity=0.230  Sum_probs=111.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .+.+|+++|+.++|||||+++|.+..+.....++.+.++....+.+.+. ..+.||||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            4678999999999999999999988776655555555555555555432 278999999999999888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-------c-CCCcEEEee
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-------K-GNIPYFETS  158 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~s  158 (206)
                      |+|+++....+....+ ....       ..++|+++++||+|+.+..     .+.+......       . +..+++++|
T Consensus       165 VVda~dgv~~qT~e~i-~~~~-------~~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~iS  231 (587)
T TIGR00487       165 VVAADDGVMPQTIEAI-SHAK-------AANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPVS  231 (587)
T ss_pred             EEECCCCCCHhHHHHH-HHHH-------HcCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence            9999864322222222 1111       1178999999999996532     1222222211       1 135799999


Q ss_pred             ccCCCCHHHHHHHHHHH
Q 028654          159 AKEGFNVEAAFECIAKN  175 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~  175 (206)
                      |++|.|+++++++|...
T Consensus       232 AktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       232 ALTGDGIDELLDMILLQ  248 (587)
T ss_pred             CCCCCChHHHHHhhhhh
Confidence            99999999999999753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.90  E-value=2.7e-23  Score=145.88  Aligned_cols=162  Identities=20%  Similarity=0.201  Sum_probs=110.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ..++|+++|+.++|||||+++|.......                  +.....+.......+........+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            35799999999999999999998644221                  111223333333444312344788999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA  147 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~  147 (206)
                      ++...+...+..+|++|+|+|+.+.-.... ...+..+...       ++|+++|+||+|+.... .....+++. .+.+
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~  152 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK  152 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence            998888888999999999999986543322 2222333222       77999999999998321 112222222 3433


Q ss_pred             HcC-----CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          148 SKG-----NIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       148 ~~~-----~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ...     ..+++++||++|.|+++|++.|.+.++
T Consensus       153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            332     357999999999999999999998775

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=2.1e-22  Score=156.93  Aligned_cols=154  Identities=19%  Similarity=0.260  Sum_probs=113.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------ccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~   76 (206)
                      ...++|+++|++|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||..++...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            35689999999999999999999987542 34456666777777777776  45689999997554322        235


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|++++.+.+..  |+..+..       .+.|+++|+||+|+...        ....+....+ .+++.
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~  340 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSN  340 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEE
Confidence            67889999999999987776654  5544421       26799999999999643        1122333343 67899


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +|+++ .|++++++.+.+.+.+..
T Consensus       341 vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHHHHh
Confidence            99997 699999999999886643

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1.1e-22  Score=159.23  Aligned_cols=149  Identities=26%  Similarity=0.311  Sum_probs=111.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   77 (206)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++  ..+.+|||||..+....        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            4589999999999999999999987642 34456666677667777766  56789999997654322        2235


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.+......|..          ..+.|+++|+||+|+.+..  ...         .....+++++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~--~~~---------~~~~~~~i~i  350 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEI--DLE---------EENGKPVIRI  350 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccc--hhh---------hccCCceEEE
Confidence            788999999999998776664433322          1267999999999997531  111         1223678999


Q ss_pred             eccCCCCHHHHHHHHHHHHhh
Q 028654          158 SAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      |++++.|+++++++|.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999998865

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=6.5e-23  Score=142.50  Aligned_cols=159  Identities=20%  Similarity=0.169  Sum_probs=103.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc----ccc---cccceecCcEEE
Q 028654           13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV   85 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~vi   85 (206)
                      ++|++|+|||||+++|.+........+.++.......+.+.+ ...+.+|||||....    ...   ....++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            579999999999999998865322233333344344444441 357789999996321    111   223467899999


Q ss_pred             EEEECCCh------hhHHHHHHHHHHHHHhcCC---CCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           86 LVYDVNVM------KSFDNLNNWREEFLIQASP---SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        86 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +|+|+++.      .++.....|...+......   ....+.|+++|+||+|+....  .......... .......+++
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~-~~~~~~~~~~  156 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEELVREL-ALEEGAEVVP  156 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHHHHHH-hcCCCCCEEE
Confidence            99999987      4666666666666543211   001267999999999997542  1111111122 2223478999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q 028654          157 TSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~  175 (206)
                      +|++++.|++++++++.+.
T Consensus       157 ~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         157 ISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EehhhhcCHHHHHHHHHhh
Confidence            9999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=2e-22  Score=158.31  Aligned_cols=159  Identities=21%  Similarity=0.168  Sum_probs=109.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-----------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-----------   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   74 (206)
                      ..++|+++|.+++|||||+|+|++.... ....++++.+.....+...+  ..+.+|||||........           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999987543 33344555555555555555  368899999965433221           


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-H---HHHcC
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-W---CASKG  150 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~---~~~~~  150 (206)
                      ..+++.+|++++|+|++++.+..... ++..+..       .+.|+++|+||+|+...   ....++... +   .....
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-------~~~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~  317 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE-------AGKALVIVVNKWDLVKD---EKTREEFKKELRRKLPFLD  317 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-------cCCcEEEEEECcccCCC---HHHHHHHHHHHHHhcccCC
Confidence            23578899999999999876655432 2232222       16799999999999721   111222222 2   22223


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ..+++++||++|.|++++|+++.+.+..
T Consensus       318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       318 FAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999886654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=1.5e-22  Score=138.13  Aligned_cols=147  Identities=20%  Similarity=0.167  Sum_probs=99.4

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------ccccceecCc
Q 028654           12 IILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD   82 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d   82 (206)
                      +++|.+|+|||||+++|.+.... ....+..+.+.........+  ..+.+|||||...+..        .....+..+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999986522 22233333444444444444  6789999999776443        3345678899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      ++++|+|+.+..+.... .+...+.. .      +.|+++|+||+|+.+....       .......+..+++++|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~-~------~~piiiv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~  143 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK-S------KKPVILVVNKVDNIKEEDE-------AAEFYSLGFGEPIPISAEHG  143 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh-c------CCCEEEEEECcccCChHHH-------HHHHHhcCCCCeEEEecccC
Confidence            99999999865433322 12222211 1      5799999999999764211       11222344347899999999


Q ss_pred             CCHHHHHHHHHHH
Q 028654          163 FNVEAAFECIAKN  175 (206)
Q Consensus       163 ~~i~~l~~~i~~~  175 (206)
                      .|+++++++|.+.
T Consensus       144 ~gv~~l~~~l~~~  156 (157)
T cd01894         144 RGIGDLLDAILEL  156 (157)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=1.4e-22  Score=132.03  Aligned_cols=114  Identities=33%  Similarity=0.552  Sum_probs=87.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      ||+|+|++|||||||+++|.+..+.  ..+.+..+.++.............+.+||++|++.+.......+..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7899999999999999999998866  23334444555555666666666799999999998888777779999999999


Q ss_pred             EECCChhhHHHHHHH---HHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           88 YDVNVMKSFDNLNNW---REEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      ||++++.++..+..+   +..+.....     ++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-----NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-----CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-----CCCEEEEEeccC
Confidence            999999999887544   555544322     689999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.90  E-value=3.2e-22  Score=141.44  Aligned_cols=160  Identities=22%  Similarity=0.146  Sum_probs=104.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc----------cccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~   76 (206)
                      ..++|+++|.+|+|||||+++|++..+.....++.+.+........   ...+.+|||||..          .+......
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            4689999999999999999999987644444444433332222222   2578999999942          22233333


Q ss_pred             ceec---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654           77 FYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        77 ~~~~---~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      +++.   .+++++++|.+.+...... .+...+ ..      .+.|+++++||+|+......+...+.+....... ..+
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~  170 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDE  170 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCc
Confidence            4443   4678889998765433221 111112 11      1678999999999976433333334444444433 378


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ++++|++++.|++++++.|.+.+.+
T Consensus       171 ~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        171 VILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            9999999999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.90  E-value=1.8e-22  Score=140.70  Aligned_cols=151  Identities=21%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc----------cccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~   74 (206)
                      +...++|+++|.+|+|||||+|++.+..+.....++.+.+........++   .+.+|||||..          .+....
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~   91 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI   91 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence            35578999999999999999999998764333333433333333333332   68899999942          222223


Q ss_pred             cccee---cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-
Q 028654           75 VAFYR---GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-  150 (206)
Q Consensus        75 ~~~~~---~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  150 (206)
                      ..+++   .++++++|+|++.+.+.... .++..+..       .+.|+++++||+|+..........++++......+ 
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~  163 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD  163 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence            33444   35799999999875444333 22222221       16799999999999754333334455555555443 


Q ss_pred             CCcEEEeeccCCCCHH
Q 028654          151 NIPYFETSAKEGFNVE  166 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~  166 (206)
                      ...++++||++|+|++
T Consensus       164 ~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       164 DPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCceEEEECCCCCCCC
Confidence            3589999999999874

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=5.5e-22  Score=137.39  Aligned_cols=156  Identities=23%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-----------ccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LGV   75 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~   75 (206)
                      +++|+++|.+|+|||||++++.+.... ....+.++.......+...+  ..+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            578999999999999999999987643 22233333333334444444  3578999999643311           112


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHHHc---CC
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCASK---GN  151 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~~~---~~  151 (206)
                      ..+..+|++++|+|++++.+.... .+...+..       .+.|+++++||+|+....  ....+... .+....   ..
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-------~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  149 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE-------EGKALVIVVNKWDLVEKD--SKTMKEFKKEIRRKLPFLDY  149 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh-------cCCCEEEEEeccccCCcc--HHHHHHHHHHHHhhcccccC
Confidence            345689999999999987665443 22222211       167999999999997642  11222222 222222   24


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHH
Q 028654          152 IPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      .+++++|++++.|++++++.+.+.
T Consensus       150 ~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         150 APIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             CceEEEeccCCCCHHHHHHHHHHh
Confidence            789999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=4.9e-22  Score=154.04  Aligned_cols=158  Identities=17%  Similarity=0.177  Sum_probs=109.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc--ccc------cccceec
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSL------GVAFYRG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~------~~~~~~~   80 (206)
                      .+|+++|.+|+|||||+|+|++..+.....++.|.+.....+.+.+. ..+.+|||+|....  ...      ....+..
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987765444555566666656655442 26679999996321  111      1233578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc-EEEeec
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETSA  159 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~  159 (206)
                      +|++++|+|++++.+...+..|...+.....    .+.|+++|+||+|+....  .   .....  ...+ .+ ++.+||
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~----~~~pvIiV~NKiDL~~~~--~---~~~~~--~~~~-~~~~v~ISA  344 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDA----HEIPTLLVMNKIDMLDDF--E---PRIDR--DEEN-KPIRVWLSA  344 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhcc----CCCCEEEEEEcccCCCch--h---HHHHH--HhcC-CCceEEEeC
Confidence            9999999999998777766544444433221    267999999999996431  1   11111  1122 33 588999


Q ss_pred             cCCCCHHHHHHHHHHHHhhc
Q 028654          160 KEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ++|.|+++++++|.+.+...
T Consensus       345 ktG~GIdeL~e~I~~~l~~~  364 (426)
T PRK11058        345 QTGAGIPLLFQALTERLSGE  364 (426)
T ss_pred             CCCCCHHHHHHHHHHHhhhc
Confidence            99999999999999988654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=2.3e-22  Score=137.03  Aligned_cols=145  Identities=20%  Similarity=0.232  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc----ccccccccceecCcEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~vi   85 (206)
                      +|+++|.+|+|||||+|++.+....  ...+       ..+.+...    .+|||||..    .+.......+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            7999999999999999998865311  1111       11222222    269999962    22222234468899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEeeccCCCC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFN  164 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  164 (206)
                      +|+|+++..++.  ..|+..+   .     .+.|+++++||+|+.+.     ..+.+..+....+. .+++++|++++.|
T Consensus        70 ~v~d~~~~~s~~--~~~~~~~---~-----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g  134 (158)
T PRK15467         70 YVHGANDPESRL--PAGLLDI---G-----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS  134 (158)
T ss_pred             EEEeCCCccccc--CHHHHhc---c-----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence            999999876542  2233322   1     15689999999998642     24555666666553 5899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      ++++|+.+.+.+.+....
T Consensus       135 i~~l~~~l~~~~~~~~~~  152 (158)
T PRK15467        135 VQQLVDYLASLTKQEEAG  152 (158)
T ss_pred             HHHHHHHHHHhchhhhcc
Confidence            999999998877655443

>cd04163 Era Era subfamily

Probab=99.89  E-value=6.9e-22  Score=135.93  Aligned_cols=157  Identities=20%  Similarity=0.129  Sum_probs=102.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------cccccee
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   79 (206)
                      ..+|+++|++|+|||||++++.+...........+....... ........+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            578999999999999999999987643221111111111111 1222346788999999543222        2234567


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      .+|++++|+|++++... ....+...+...       +.|+++|+||+|+...  .....+....+.......+++++|+
T Consensus        82 ~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~  151 (168)
T cd04163          82 DVDLVLFVVDASEPIGE-GDEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISA  151 (168)
T ss_pred             hCCEEEEEEECCCccCc-hHHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEe
Confidence            89999999999976221 112222323221       5699999999999743  2233344444444444578999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q 028654          160 KEGFNVEAAFECIAKN  175 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~  175 (206)
                      +++.++++++++|.+.
T Consensus       152 ~~~~~~~~l~~~l~~~  167 (168)
T cd04163         152 LKGENVDELLEEIVKY  167 (168)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.2e-22  Score=127.99  Aligned_cols=163  Identities=17%  Similarity=0.286  Sum_probs=123.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .+.+|+++|..++||||++..|.-.. .....||++..+  ..+++.+  +.+.+||.+|++..+..++.|+....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnv--etVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-CcccccccceeE--EEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            47899999999999999999998765 344456655444  4444444  788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|..+.+..+.+..-++.+   .......+.+++|.+||.|++.+...++..+.++.-......+.+.++++.+|.|+.
T Consensus        91 V~Dsa~~dr~eeAr~ELh~i---i~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRI---INDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEeccchhhHHHHHHHHHHH---hCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999876666665444433   344444578999999999999875544443333322223335778999999999999


Q ss_pred             HHHHHHHHHHh
Q 028654          167 AAFECIAKNAL  177 (206)
Q Consensus       167 ~l~~~i~~~~~  177 (206)
                      +-+.|+...+-
T Consensus       168 eglswlsnn~~  178 (180)
T KOG0071|consen  168 EGLSWLSNNLK  178 (180)
T ss_pred             HHHHHHHhhcc
Confidence            99999988654

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.89  E-value=4.2e-22  Score=128.91  Aligned_cols=173  Identities=22%  Similarity=0.395  Sum_probs=143.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      +.-.++|.++|.+..|||||+-.+.+..+...+..+.+.....+.+.+.+..+.+.+||.+|++++..+...+.+.+-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            44589999999999999999999999998888888999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH----HHHHHHHcCCCcEEEeecc
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK----AKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~  160 (206)
                      +++||.+.++++..+..|+.+....-.    ..+| |+|+||.|+.-.- ..+.++.    ...+++..+ .+.+++|+.
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~Nk----tAiP-ilvGTKyD~fi~l-p~e~Q~~I~~qar~YAk~mn-AsL~F~Sts  169 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNK----TAIP-ILVGTKYDLFIDL-PPELQETISRQARKYAKVMN-ASLFFCSTS  169 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCC----ccce-EEeccchHhhhcC-CHHHHHHHHHHHHHHHHHhC-CcEEEeecc
Confidence            999999999999999999988754322    1333 6789999964221 1122222    233444454 889999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQEE  184 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~~~  184 (206)
                      .+.|++.+|.-+..++..-+++-+
T Consensus       170 ~sINv~KIFK~vlAklFnL~~ti~  193 (205)
T KOG1673|consen  170 HSINVQKIFKIVLAKLFNLPWTIP  193 (205)
T ss_pred             ccccHHHHHHHHHHHHhCCceecc
Confidence            999999999999999998888733

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.1e-21  Score=154.47  Aligned_cols=149  Identities=21%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------ccccccccee
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~   79 (206)
                      ++|+++|.+|+|||||+|+|.+.... ....++.+.+.....+.+.+  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987642 23345555556666666666  6789999999776        2223345678


Q ss_pred             cCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           80 GADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      .+|++++|+|+++..+...  +..|+...          +.|+++|+||+|+...      .+....+ ...+...++++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i  142 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI  142 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence            8999999999987543322  23333321          6799999999997541      1222222 23343458999


Q ss_pred             eccCCCCHHHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~  176 (206)
                      ||++|.|+++++++|.+..
T Consensus       143 Sa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        143 SAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EeeCCCCHHHHHHHHHhhC
Confidence            9999999999999998844

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=9.1e-22  Score=161.26  Aligned_cols=159  Identities=21%  Similarity=0.217  Sum_probs=112.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ..+..|+++|+.++|||||+++|.+..+......+.+.+.....+.+.+  ..+.||||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            3567899999999999999999988776654445554445445555554  57899999999999988888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH---HHHHc-CCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA---WCASK-GNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~s~~~  161 (206)
                      +|+|+++....+....|. ...    .   .++|+++++||+|+.......+. .++..   +.... +.++++++||++
T Consensus       366 LVVdAddGv~~qT~e~i~-~a~----~---~~vPiIVviNKiDl~~a~~e~V~-~eL~~~~~~~e~~g~~vp~vpvSAkt  436 (787)
T PRK05306        366 LVVAADDGVMPQTIEAIN-HAK----A---AGVPIIVAINKIDKPGANPDRVK-QELSEYGLVPEEWGGDTIFVPVSAKT  436 (787)
T ss_pred             EEEECCCCCCHhHHHHHH-HHH----h---cCCcEEEEEECccccccCHHHHH-HHHHHhcccHHHhCCCceEEEEeCCC
Confidence            999998743222222221 111    1   17899999999999753211111 11111   11222 247899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 028654          162 GFNVEAAFECIAKN  175 (206)
Q Consensus       162 ~~~i~~l~~~i~~~  175 (206)
                      |.|+++++++|...
T Consensus       437 G~GI~eLle~I~~~  450 (787)
T PRK05306        437 GEGIDELLEAILLQ  450 (787)
T ss_pred             CCCchHHHHhhhhh
Confidence            99999999999864

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=7.8e-22  Score=160.37  Aligned_cols=162  Identities=22%  Similarity=0.268  Sum_probs=112.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEE--EEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK--EVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .....|+++|+.++|||||+++|....+.....++.+.+....  .+...+....+.||||||++.|..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3567999999999999999999998776654444444333222  23333455789999999999999988889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH---HHHc-CCCcEEEeec
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW---CASK-GNIPYFETSA  159 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~s~  159 (206)
                      +|+|+|+++....+....+ ..+.       ..++|+++++||+|+....... ..+.+..+   .... +..+++++||
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k-------~~~iPiIVViNKiDl~~~~~e~-v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ-------AANVPIIVAINKIDKANANTER-IKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH-------hcCceEEEEEECCCccccCHHH-HHHHHHHhccchHhhCCCceEEEEEC
Confidence            9999999874332222222 1111       1278999999999997532111 11111111   1112 2478999999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028654          160 KEGFNVEAAFECIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~  176 (206)
                      ++|.|+++++++|...+
T Consensus       393 ktG~GIdeLle~I~~l~  409 (742)
T CHL00189        393 SQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCHHHHHHhhhhhh
Confidence            99999999999998764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.88  E-value=1.6e-21  Score=138.18  Aligned_cols=122  Identities=18%  Similarity=0.300  Sum_probs=89.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecC-cEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~vi~v~   88 (206)
                      +|+++|++|||||||+++|....+.....++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999999988765443332 2222222221113456789999999999988888888888 9999999


Q ss_pred             ECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           89 DVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        89 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      |+++. .++..+..|+..+...... ...+.|+++++||+|+..+.
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhcccC
Confidence            99987 6777777776665443221 12378999999999987653

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd00880 Era_like Era (E

Probab=99.88  E-value=2.1e-21  Score=132.50  Aligned_cols=154  Identities=17%  Similarity=0.152  Sum_probs=103.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-------cccceecCcEE
Q 028654           13 ILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVAFYRGADCC   84 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~v   84 (206)
                      ++|++|+|||||++++.+.... .......+............ ...+.+||+||.......       ...++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5799999999999999987554 33333333334333333321 358899999996655433       33467889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|+++........ +......       .+.|+++|+||.|+..........+............+++++|++++.|
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~  151 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG  151 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence            9999999877665543 2222221       1779999999999986432221111112222333458999999999999


Q ss_pred             HHHHHHHHHHH
Q 028654          165 VEAAFECIAKN  175 (206)
Q Consensus       165 i~~l~~~i~~~  175 (206)
                      ++++++++.+.
T Consensus       152 v~~l~~~l~~~  162 (163)
T cd00880         152 IDELREALIEA  162 (163)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=4.4e-21  Score=150.96  Aligned_cols=162  Identities=22%  Similarity=0.181  Sum_probs=108.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-----------c
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   74 (206)
                      ..++|+++|.+|+|||||+|+|++... .....++++.+.....+...+  ..+.+|||||.......           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            468999999999999999999997653 234445555555444444444  46788999995332211           1


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..++..+|++++|+|++++.+.... .+...+..       .+.|+++|+||+|+..........+.+..........++
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~-------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i  321 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE-------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPI  321 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCE
Confidence            2356789999999999987665543 22222221       167999999999997432111222222222223345899


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhh
Q 028654          155 FETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      +++||+++.|++++++.+.+....
T Consensus       322 ~~~SA~~~~gv~~l~~~i~~~~~~  345 (435)
T PRK00093        322 VFISALTGQGVDKLLEAIDEAYEN  345 (435)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998876543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=3.3e-21  Score=151.52  Aligned_cols=151  Identities=19%  Similarity=0.248  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc--------cccccccccceec
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG   80 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~   80 (206)
                      +|+++|.+|+|||||+|+|.+.... ....++.+.+.......+.+  ..+.+|||||.        ..+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987642 23345555555556666655  46899999995        3334445567789


Q ss_pred             CcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           81 ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      +|++++|+|+.+..+...  +..|+..          .+.|+++|+||+|+....  ..    ... ....+..+++++|
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~----------~~~piilVvNK~D~~~~~--~~----~~~-~~~lg~~~~~~vS  141 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRK----------SGKPVILVANKIDGKKED--AV----AAE-FYSLGFGEPIPIS  141 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHH----------hCCCEEEEEECccCCccc--cc----HHH-HHhcCCCCeEEEe
Confidence            999999999987443332  2333322          167999999999987542  11    111 2344545799999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhc
Q 028654          159 AKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      |.+|.|+.++++++.+.+.+.
T Consensus       142 a~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       142 AEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             CCcCCChHHHHHHHHHhcCcc
Confidence            999999999999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.88  E-value=4e-21  Score=154.83  Aligned_cols=162  Identities=17%  Similarity=0.208  Sum_probs=112.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--C-------------CcccccceeeEEEEEEe---CCeEEEEEEeeCCCcc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   68 (206)
                      ...+++++|+.++|||||+.+|+.....  .             +...+.+.......+.+   ++..+.+.||||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            4569999999999999999999863211  0             11112222222222222   4557899999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~  148 (206)
                      ++...+..++..+|++|+|+|+++....+....|.....        .+.|+++|+||+|+.....    .+....+...
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~~----~~v~~ei~~~  153 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAADP----ERVKQEIEDV  153 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCcccH----HHHHHHHHHH
Confidence            998888889999999999999998655554444433221        1679999999999865321    1122233332


Q ss_pred             cC--CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       149 ~~--~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      .+  ...++++||++|.|+++++++|.+.++...
T Consensus       154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             hCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            32  134899999999999999999999887543

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.87  E-value=3.5e-21  Score=138.26  Aligned_cols=177  Identities=17%  Similarity=0.131  Sum_probs=120.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc------------cccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------------RFQS   72 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------------~~~~   72 (206)
                      .++.++|+|+|+||+|||||.|.+.+.++........+++....-+ +.....++.|+||||--            .+..
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            4678999999999999999999999998876666655544433333 44455799999999911            1111


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-----------cee---c
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----------RVV---S  138 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-----------~~~---~  138 (206)
                      ....++..||.+++++|+++...... ...+..+..+.      ++|-++|+||+|......           .+.   .
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k  220 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK  220 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence            22345678999999999996332221 23334444443      679999999999754311           011   1


Q ss_pred             HHHHHHHHHHc------------CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCc
Q 028654          139 EKKAKAWCASK------------GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD  189 (206)
Q Consensus       139 ~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~  189 (206)
                      .+-.+.|....            +...+|.+||++|+|++++.++|...++..+|+++..+..
T Consensus       221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T  283 (379)
T KOG1423|consen  221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT  283 (379)
T ss_pred             hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence            11122221111            1235899999999999999999999999999997766543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.87  E-value=1.3e-20  Score=155.10  Aligned_cols=154  Identities=18%  Similarity=0.200  Sum_probs=109.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc----------ccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~   76 (206)
                      +.++|+++|.+|+|||||+|++++........++.+.+.....+.  .....+.++||||...+...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~--~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFS--TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEE--cCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            347899999999999999999998765544445554444444443  34467899999997665431          112


Q ss_pred             ce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           77 FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        77 ~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ++  ..+|++++|+|+++.+..   .++..++...       +.|+++|+||+|+.+..  . ...+.+.+.+..+ .++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~-------giPvIvVlNK~Dl~~~~--~-i~id~~~L~~~LG-~pV  145 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL-------GIPCIVALNMLDIAEKQ--N-IRIDIDALSARLG-CPV  145 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc-------CCCEEEEEEchhhhhcc--C-cHHHHHHHHHHhC-CCE
Confidence            22  478999999999875432   2233344322       78999999999987532  2 2344556666666 899


Q ss_pred             EEeeccCCCCHHHHHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      +++|+.+++|++++++.+.+..
T Consensus       146 vpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        146 IPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEEeecCCCHHHHHHHHHHhh
Confidence            9999999999999999998865

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=6.4e-21  Score=157.28  Aligned_cols=161  Identities=22%  Similarity=0.196  Sum_probs=110.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------cccc-cc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-GV   75 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~~   75 (206)
                      .++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++.  .+.+|||||..+          +... ..
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            579999999999999999999988643 344555556666666666664  456899999532          1111 12


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .+++.+|++++|+|+++..+..... ++..+..       .+.|+++|+||+|+.+..........+..........+++
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~-------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD-------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEE
Confidence            3467899999999999877766543 3333322       1679999999999975321111111122111122346789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhh
Q 028654          156 ETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ++||++|.|++++++.+.+.+.+
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998765

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.87  E-value=4.1e-21  Score=149.03  Aligned_cols=170  Identities=16%  Similarity=0.144  Sum_probs=109.1

Q ss_pred             ccccceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEEEEe------------------C--C----
Q 028654            2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQF------------------E--D----   54 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----   54 (206)
                      =.++.+.++|+++|+.++|||||+.+|.+....   .+.....+.........+                  .  +    
T Consensus         3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (411)
T PRK04000          3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE   82 (411)
T ss_pred             cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence            355677899999999999999999999664211   122222222221111010                  0  0    


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      ....+.||||||++.+.......+..+|++++|+|++++. ..+....+ ..+ ....     ..|+++|+||+|+.+..
T Consensus        83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l-~~~~-----i~~iiVVlNK~Dl~~~~  155 (411)
T PRK04000         83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MAL-DIIG-----IKNIVIVQNKIDLVSKE  155 (411)
T ss_pred             cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHcC-----CCcEEEEEEeeccccch
Confidence            1257899999999988777766777789999999999643 11211111 112 1111     23689999999997642


Q ss_pred             cceecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          134 SRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       134 ~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ......+++..+....  ...+++++||+++.|++++++.|.+.+..
T Consensus       156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence            2222234444444332  24789999999999999999999987754

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.87  E-value=2.5e-21  Score=150.36  Aligned_cols=167  Identities=18%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEE--------------EEe----CC------eEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKE--------------VQF----ED------RLF   57 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~   57 (206)
                      ++..++|+++|+.++|||||+++|.+....   .+.....+.......              +..    ++      ...
T Consensus         1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            356799999999999999999999764221   111111111111000              000    01      135


Q ss_pred             EEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654           58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV  137 (206)
Q Consensus        58 ~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  137 (206)
                      .+.+||+||+++|...+...+..+|++++|+|+++..........+..+ ....     ..|+++++||+|+........
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~  154 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALE  154 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHH
Confidence            7899999999999888888888899999999998643111112222222 1111     236899999999976422222


Q ss_pred             cHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          138 SEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       138 ~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ..+++..+....  ...+++++||++++|+++++++|...+.
T Consensus       155 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       155 NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            334444444332  2478999999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.87  E-value=7.4e-20  Score=118.28  Aligned_cols=169  Identities=26%  Similarity=0.373  Sum_probs=135.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccccceeeEEEEEEe-CCeEEEEEEeeCCCcccc-ccccccceecCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERF-QSLGVAFYRGAD   82 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d   82 (206)
                      ..-+++|+|..++|||+++..+..+...  ....+|. .+++...++. ++..-.+.|+||.|-... ..+-..++.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            4679999999999999999998866544  3445555 4455555544 445557899999996555 455667888999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      ++++|||..++++|+.+.-+-..+.+   ..+.+.+|+++.+||+|+.++  +.+..+....|++... +..+++++.+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~dR  160 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMDR  160 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEeccc
Confidence            99999999999999987766666654   344457899999999999866  8889999999999887 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCC
Q 028654          163 FNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ..+-+.|-.+...+...+.+
T Consensus       161 ~sL~epf~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  161 PSLYEPFTYLASRLHQPQSK  180 (198)
T ss_pred             hhhhhHHHHHHHhccCCccc
Confidence            99999999999887765444

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.8e-20  Score=154.68  Aligned_cols=155  Identities=21%  Similarity=0.196  Sum_probs=105.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------cccccccce
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY   78 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~   78 (206)
                      ..+|+++|.+++|||||+|+|++.... ....++.+.+.......+.+  ..+.+|||||...        +......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            468999999999999999999987542 23345555554444444444  5688999999653        223344567


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|++++|+|+++...... ..|...+..       .+.|+++|+||+|+....      .....+.. .+....+++|
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~------~~~~~~~~-lg~~~~~~iS  417 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE------YDAAEFWK-LGLGEPYPIS  417 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch------hhHHHHHH-cCCCCeEEEE
Confidence            89999999999986322211 233333322       278999999999986421      11222222 2323568999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhc
Q 028654          159 AKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      |++|.|+++++++|++.+.+.
T Consensus       418 A~~g~GI~eLl~~i~~~l~~~  438 (712)
T PRK09518        418 AMHGRGVGDLLDEALDSLKVA  438 (712)
T ss_pred             CCCCCCchHHHHHHHHhcccc
Confidence            999999999999999988663

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=8.9e-21  Score=151.83  Aligned_cols=158  Identities=23%  Similarity=0.234  Sum_probs=102.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------------CeEEEEEEeeCCCccccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~   71 (206)
                      +.-|+++|++++|||||+++|.+..+......+.+.++....+..+                .....+.||||||++.+.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            3468999999999999999999876653322222221111111111                011248899999999999


Q ss_pred             cccccceecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----------c
Q 028654           72 SLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----------S  138 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----------~  138 (206)
                      .++..+++.+|++++|+|+++   +.+++.+.    .+. .      .+.|+++++||+|+.+......          .
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~-~------~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~  152 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR-M------YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQ  152 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH-H------cCCCEEEEEECCCccchhhhccCchHHHHHHhh
Confidence            888888999999999999987   33333322    111 1      1679999999999974211000          0


Q ss_pred             H----HH--------HHHHHH-------------HcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          139 E----KK--------AKAWCA-------------SKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       139 ~----~~--------~~~~~~-------------~~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      .    +.        ..++..             ..+..+++++||++|+|+++|+.+|....
T Consensus       153 ~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       153 EIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence            0    00        011111             12347899999999999999999887544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK10218 GTP-binding protein; Provisional

Probab=99.86  E-value=2.7e-20  Score=149.52  Aligned_cols=165  Identities=18%  Similarity=0.230  Sum_probs=114.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc--CCCCCC------------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN--RKFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   72 (206)
                      ...+|+++|+.++|||||+++|+.  +.+...            .....+.++......+......+.+|||||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            357999999999999999999986  322221            122334445555555555568999999999999999


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----  148 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----  148 (206)
                      .+..+++.+|++++|+|+++....+. ..++..+..       .++|+++++||+|+......... +++..+...    
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-------~gip~IVviNKiD~~~a~~~~vl-~ei~~l~~~l~~~  154 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-------YGLKPIVVINKVDRPGARPDWVV-DQVFDLFVNLDAT  154 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-------cCCCEEEEEECcCCCCCchhHHH-HHHHHHHhccCcc
Confidence            89999999999999999987432222 222222222       17799999999998765333322 233333211    


Q ss_pred             --cCCCcEEEeeccCCC----------CHHHHHHHHHHHHhhcC
Q 028654          149 --KGNIPYFETSAKEGF----------NVEAAFECIAKNALKNE  180 (206)
Q Consensus       149 --~~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~~~~  180 (206)
                        ...++++++||.+|.          ++..+++.|++.++...
T Consensus       155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence              123789999999998          58899999888887543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.86  E-value=5.4e-21  Score=125.11  Aligned_cols=136  Identities=26%  Similarity=0.388  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----ccccccccccceecCcEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----QERFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~vi   85 (206)
                      ||+++|+.|||||||+++|.+...  .+..|....+.       +     .++||||    ...+..........+|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988653  33344332221       1     2479999    3344444455557899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ++.|++++.+.--     ..+...+      +.|+|-|+||+|+...   ....+..+++.+..+...+|.+|+.+++|+
T Consensus        69 ll~dat~~~~~~p-----P~fa~~f------~~pvIGVITK~Dl~~~---~~~i~~a~~~L~~aG~~~if~vS~~~~eGi  134 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASMF------NKPVIGVITKIDLPSD---DANIERAKKWLKNAGVKEIFEVSAVTGEGI  134 (143)
T ss_pred             EEecCCCCCccCC-----chhhccc------CCCEEEEEECccCccc---hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence            9999997543211     1222222      6799999999999842   245667777777777778899999999999


Q ss_pred             HHHHHHHH
Q 028654          166 EAAFECIA  173 (206)
Q Consensus       166 ~~l~~~i~  173 (206)
                      ++|.++|.
T Consensus       135 ~eL~~~L~  142 (143)
T PF10662_consen  135 EELKDYLE  142 (143)
T ss_pred             HHHHHHHh
Confidence            99999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.3e-20  Score=151.70  Aligned_cols=146  Identities=19%  Similarity=0.234  Sum_probs=106.1

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc------cccce--ecCcEEEE
Q 028654           15 GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL   86 (206)
Q Consensus        15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~vi~   86 (206)
                      |.+|+|||||+|++.+........++.+.+.....+.+++  ..+.+|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876656667766666666666665  45789999998776543      22222  46899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++.+..   .++..++..       .+.|+++|+||+|+.+..  .. ..+.+.+.+..+ .+++++||++|+|++
T Consensus        79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~--~i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~  144 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKK--GI-RIDEEKLEERLG-VPVVPTSATEGRGIE  144 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhC--CC-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence            9999874321   222222222       178999999999986532  12 234555666666 899999999999999


Q ss_pred             HHHHHHHHHH
Q 028654          167 AAFECIAKNA  176 (206)
Q Consensus       167 ~l~~~i~~~~  176 (206)
                      ++++++.+.+
T Consensus       145 eL~~~i~~~~  154 (591)
T TIGR00437       145 RLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.86  E-value=2e-20  Score=128.97  Aligned_cols=154  Identities=23%  Similarity=0.247  Sum_probs=99.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccccccee
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR   79 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~   79 (206)
                      .|+++|.+|+|||||++.+.+..+.....++.+.+........++   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            378999999999999999996555444444444433333333333   888999999432          2222233332


Q ss_pred             ---cCcEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-HcCCCc
Q 028654           80 ---GADCCVLVYDVNVMKSF--DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-SKGNIP  153 (206)
Q Consensus        80 ---~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~  153 (206)
                         ..+++++++|.....+.  ..+..|+...          +.|+++|+||+|+.................. .....+
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  147 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP  147 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence               45788999998865322  2233343322          5689999999998654322323333333333 234478


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHH
Q 028654          154 YFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      ++++|++++.++++++++|.+.+
T Consensus       148 ~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         148 IILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             eEEEecCCCCCHHHHHHHHHHhC
Confidence            99999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.86  E-value=1.9e-20  Score=151.16  Aligned_cols=161  Identities=21%  Similarity=0.173  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      -|+++|+.++|||||+++|.+..   +..+...+.+.+.....+...+ ...+.||||||++.|...+...+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            47899999999999999998643   2333444544444333332222 2357899999999998888888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcC--CCcEEEeeccCCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--NIPYFETSAKEGF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~  163 (206)
                      |+|+++.-..+. ...+. +....      ++| +++|+||+|+.+........+++..+....+  ..+++++|+++|.
T Consensus        81 VVda~eg~~~qT-~ehl~-il~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~  152 (614)
T PRK10512         81 VVACDDGVMAQT-REHLA-ILQLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGR  152 (614)
T ss_pred             EEECCCCCcHHH-HHHHH-HHHHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCC
Confidence            999987322111 11111 11211      445 5799999999753222222344555544433  3789999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 028654          164 NVEAAFECIAKNALKN  179 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~  179 (206)
                      |++++++.|.+.....
T Consensus       153 gI~~L~~~L~~~~~~~  168 (614)
T PRK10512        153 GIDALREHLLQLPERE  168 (614)
T ss_pred             CCHHHHHHHHHhhccc
Confidence            9999999998765443

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.86  E-value=7.5e-21  Score=148.90  Aligned_cols=158  Identities=20%  Similarity=0.207  Sum_probs=102.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (206)
                      ..+.++|+++|++++|||||+++|+.....                               .+..++++.+.....  +.
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~~   80 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--FE   80 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--Ee
Confidence            345789999999999999999999843211                               112334444443333  33


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      ...+.+.||||||++++...+...+..+|++++|+|+++...+.....+...+.....     ..|+++++||+|+....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivviNK~Dl~~~~  155 (425)
T PRK12317         81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAINKMDAVNYD  155 (425)
T ss_pred             cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEEEcccccccc
Confidence            4457899999999988877666677899999999999862121111111111222211     23689999999997531


Q ss_pred             cc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHHH
Q 028654          134 SR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       134 ~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l~  169 (206)
                      ..  ....+++..+....+    ..+++++||++|.|++++.
T Consensus       156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            11  122345555554443    3679999999999998744

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.86  E-value=5.1e-20  Score=132.91  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=103.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceecCc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   82 (206)
                      +|+++|.+|+|||||+++|.+........+.++.+.....+.+.+  ..+++||+||..+..       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764433344445555556666655  578899999964332       12345678999


Q ss_pred             EEEEEEECCChh-hHHHHHHHHHH----------------------------------------HHHhcC----------
Q 028654           83 CCVLVYDVNVMK-SFDNLNNWREE----------------------------------------FLIQAS----------  111 (206)
Q Consensus        83 ~vi~v~d~~~~~-~~~~~~~~~~~----------------------------------------~~~~~~----------  111 (206)
                      ++++|+|+++.+ ....+...+..                                        ++..+.          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 22222222211                                        000000          


Q ss_pred             -----------CCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          112 -----------PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       112 -----------~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                                 ......+|+++|+||+|+...       ++...++..   ..++++||+++.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       000113589999999998642       333344332   4689999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.86  E-value=2.9e-20  Score=130.50  Aligned_cols=148  Identities=18%  Similarity=0.131  Sum_probs=97.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   71 (206)
                      .++|+++|+.++|||||+++|+....                ..+..+..  +.......+.....++.|+||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~--Ti~~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGI--TINTAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCc--cEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence            47899999999999999999975310                01112222  3333334444455688999999998888


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHHHc
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCASK  149 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~  149 (206)
                      ......+..+|++++|+|+...-..+. ...+..+...       ++| +++++||+|+...... ....+++..+....
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~  151 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY  151 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            888888899999999999986422221 2222222221       556 7899999999743211 11223455555443


Q ss_pred             C----CCcEEEeeccCCCCH
Q 028654          150 G----NIPYFETSAKEGFNV  165 (206)
Q Consensus       150 ~----~~~~~~~s~~~~~~i  165 (206)
                      +    +++++++||++|.++
T Consensus       152 g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         152 GFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             cccccCCeEEEeeCccccCC
Confidence            2    478999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.85  E-value=1e-20  Score=148.18  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=103.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC--CC-----------------------------CCcccccceeeEEEEEEeC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK--FS-----------------------------NQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~   53 (206)
                      ....++|+++|+.++|||||+++|+...  ..                             .+...+.+.+....  .+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~--~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHW--KFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEE--EEc
Confidence            3457899999999999999999998522  11                             11122333333333  344


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ...+.+.||||||++.+.......+..+|++++|+|+++.++....+. +...+.....     ..|+++|+||+|+.+.
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~~  156 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVNY  156 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccCc
Confidence            445789999999999887777777889999999999998643211111 1111222221     2478999999999753


Q ss_pred             Cc--ceecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHHH
Q 028654          133 NS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l~  169 (206)
                      ..  .....+++..++...+    .++++++||+++.|+.+++
T Consensus       157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            21  1122345555665543    3689999999999998633

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.85  E-value=2.1e-20  Score=150.25  Aligned_cols=163  Identities=18%  Similarity=0.215  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCCc------------ccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR--KFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   74 (206)
                      .+|+++|+.++|||||+++|+..  .+....            ....+.++......+......+.+|||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            48999999999999999999863  221110            1112233333333333344788999999999999888


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-----
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-----  149 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-----  149 (206)
                      ..+++.+|++++|+|+.+.. ......|+..+...       ++|+++|+||+|+.......+ .+++..+....     
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~-------~ip~IVviNKiD~~~a~~~~v-~~ei~~l~~~~g~~~e  152 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL-------GLKPIVVINKIDRPSARPDEV-VDEVFDLFAELGADDE  152 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC-------CCCEEEEEECCCCCCcCHHHH-HHHHHHHHHhhccccc
Confidence            99999999999999998632 22234444444331       779999999999875432222 23333333211     


Q ss_pred             -CCCcEEEeeccCCC----------CHHHHHHHHHHHHhhcC
Q 028654          150 -GNIPYFETSAKEGF----------NVEAAFECIAKNALKNE  180 (206)
Q Consensus       150 -~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~~~~  180 (206)
                       ...+++++||++|.          |+..+|+.|++.++...
T Consensus       153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence             13689999999995          79999999999887543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.1e-21  Score=129.28  Aligned_cols=165  Identities=24%  Similarity=0.324  Sum_probs=118.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC---CC----CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRK---FS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   79 (206)
                      ..+.|+++|..++|||||+.++-...   +.    ....++.+..  ...+.+.  ...+.|||.+|++..++++..++.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn--ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN--IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee--ecceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence            35788999999999999998864321   11    2223333333  3333444  357899999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--cCCCcEEEe
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--KGNIPYFET  157 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  157 (206)
                      .+|++|+++|+++++-++.-..-+..+.   ......+.|+++.+||.|+.+.....+....... +..  ....++.++
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~---~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~~rd~~~~pv  167 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVV---ENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIPRRDNPFQPV  167 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHH---HHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcCCccCccccc
Confidence            9999999999999887766544333332   3334448999999999999875322222211211 111  124789999


Q ss_pred             eccCCCCHHHHHHHHHHHHhhc
Q 028654          158 SAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ||.+|+|+++-..|+++.+.++
T Consensus       168 Sal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  168 SALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhcccHHHHHHHHHHHHhhc
Confidence            9999999999999999999988

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=6.7e-20  Score=133.19  Aligned_cols=165  Identities=21%  Similarity=0.207  Sum_probs=123.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc------cccc--cccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------ERFQ--SLGVAF   77 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~~~--~~~~~~   77 (206)
                      ...+.|+|.|.||+|||||++.+++........|.+|..+....+....  ..++++||||-      +...  .....+
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            3567899999999999999999999998888999999988888876655  67889999991      1111  111222


Q ss_pred             ee-cCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           78 YR-GADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        78 ~~-~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ++ -.++++|++|++..+  +.+.-..++.++...+      +.|+++|+||+|....    ...+++.......+....
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~~~~~~  313 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEEGGEEP  313 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhhccccc
Confidence            33 378999999999744  4455566777777665      4689999999998743    344555555555554667


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ..+++..+.+.+.+...+...+.+....
T Consensus       314 ~~~~~~~~~~~d~~~~~v~~~a~~~~~e  341 (346)
T COG1084         314 LKISATKGCGLDKLREEVRKTALEPLLE  341 (346)
T ss_pred             cceeeeehhhHHHHHHHHHHHhhchhhh
Confidence            7889999999999998888887665443

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=7.1e-20  Score=138.79  Aligned_cols=161  Identities=23%  Similarity=0.165  Sum_probs=116.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-----------c
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~   74 (206)
                      ..++|+++|.|++|||||+|++++.... ....++++.+.....+++++  ..+.++||.|...-...           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999987654 56677777777777777777  45678899993222111           1


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC--CcceecHHHHHHHHHHcCCC
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--NSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ...+..+|++++|+|++.+-+-++. .....+..    .   +.+++||+||.|+.+.  .......+++.......+..
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~----~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a  326 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE----A---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA  326 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH----c---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence            2345779999999999976554442 22222221    1   7799999999999875  22223333444444556678


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          153 PYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      +++++||+++.++..+|+.+.+...
T Consensus       327 ~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         327 PIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             eEEEEEecCCCChHHHHHHHHHHHH
Confidence            9999999999999999998887553

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.85  E-value=9.3e-20  Score=138.53  Aligned_cols=155  Identities=25%  Similarity=0.277  Sum_probs=116.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc--------cc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~   76 (206)
                      ...++++++|.||+|||||+|+|.+.+.. ....+++|.++....+.++|  +.+.++||.|..+.....        ..
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~  292 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKK  292 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHH
Confidence            34689999999999999999999998765 67788999999999999988  667788999955433322        24


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .++.||.+++|+|++.+.+-....-+ .    .    ...+.|+++|.||.|+.....    .+..    ......+++.
T Consensus       293 ~i~~ADlvL~v~D~~~~~~~~d~~~~-~----~----~~~~~~~i~v~NK~DL~~~~~----~~~~----~~~~~~~~i~  355 (454)
T COG0486         293 AIEEADLVLFVLDASQPLDKEDLALI-E----L----LPKKKPIIVVLNKADLVSKIE----LESE----KLANGDAIIS  355 (454)
T ss_pred             HHHhCCEEEEEEeCCCCCchhhHHHH-H----h----cccCCCEEEEEechhcccccc----cchh----hccCCCceEE
Confidence            56789999999999975322222111 1    1    122779999999999987532    1111    2223357899


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhc
Q 028654          157 TSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +|+++++|++.|.+.|.+.+...
T Consensus       356 iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         356 ISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEecCccCHHHHHHHHHHHHhhc
Confidence            99999999999999999988776

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1.2e-19  Score=124.02  Aligned_cols=159  Identities=20%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------cccccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~   76 (206)
                      ...-|+++|.+|+|||||+|+|+++.-......++|.+.....+.+++.   +.++|.||          .+.+......
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            3457899999999999999999997754445566666666666666663   77899999          3445555556


Q ss_pred             ceec---CcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           77 FYRG---ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        77 ~~~~---~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      |+..   ..++++++|+...-...+  +-.|+...          ++|+++++||+|.............+.........
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~  169 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP  169 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence            6643   568899999987443322  23333332          88999999999998753332222333322222221


Q ss_pred             Cc--EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          152 IP--YFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       152 ~~--~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ..  ++..|+..+.|++++...|.+.+.+
T Consensus       170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 DDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            22  8889999999999999999987754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.84  E-value=2.5e-22  Score=133.84  Aligned_cols=176  Identities=34%  Similarity=0.603  Sum_probs=150.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe-EEEEEEeeCCCccccccccccceecCcEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ...++++|+|..|+|||+++.+++-..+...+..+.+.++..+....+.+ .+++++||..|++++..+..-+++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            45689999999999999999999988888888889888887776666553 36789999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      .+|||++...+++....|...+...+..-...-.|+++..||+|..... .......+..+.++.+....+++|++.+.+
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccccC
Confidence            9999999999999999999988776665554456889999999987542 233356777888888888999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      +.|+.+.+++.+..+..+
T Consensus       182 i~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  182 IPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             hhHHHHHHHHHHHhhccC
Confidence            999999999999887755

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.84  E-value=5.1e-20  Score=131.11  Aligned_cols=150  Identities=21%  Similarity=0.146  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------------------cccccceeeEEEEEEeCCeEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------------------YKATIGADFLTKEVQFEDRLFT   58 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   58 (206)
                      +|+++|++++|||||+++|+.......                               ..+..+.+.....+...  ...
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~--~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP--KRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC--Cce
Confidence            589999999999999999975432111                               11223333333333333  357


Q ss_pred             EEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc--e
Q 028654           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--V  136 (206)
Q Consensus        59 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--~  136 (206)
                      +.+|||||+.++...+...++.+|++++|+|+++...... ..... +.....     ..++++|+||+|+......  .
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~-~~~~~~-----~~~iIvviNK~D~~~~~~~~~~  151 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSY-ILSLLG-----IRHVVVAVNKMDLVDYSEEVFE  151 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHH-HHHHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence            7899999998877666777889999999999986432111 11111 111111     2357889999998753211  1


Q ss_pred             ecHHHHHHHHHHcC--CCcEEEeeccCCCCHHHH
Q 028654          137 VSEKKAKAWCASKG--NIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~l  168 (206)
                      ...+++..+....+  ..+++++||+++.|+.+.
T Consensus       152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            12234444555544  356999999999998854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.84  E-value=1.2e-19  Score=140.40  Aligned_cols=163  Identities=15%  Similarity=0.131  Sum_probs=107.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ..+.++|+++|+.++|||||+++|++...                ..+.....+  .......+......+.|+||||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T--~~~~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGIT--INTAHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCcc--EEEEeeEecCCCcEEEEEECCCHH
Confidence            34578999999999999999999986311                011123333  333344454445678899999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCccee-cHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVV-SEKKAKAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~-~~~~~~~~~  146 (206)
                      +|.......+..+|++++|+|+........ ...+..+...       ++| +++++||+|+........ ..+++..+.
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l  158 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence            888777777888999999999986422222 2222222211       667 678999999974322111 223455555


Q ss_pred             HHcC----CCcEEEeeccCCC--------CHHHHHHHHHHHHh
Q 028654          147 ASKG----NIPYFETSAKEGF--------NVEAAFECIAKNAL  177 (206)
Q Consensus       147 ~~~~----~~~~~~~s~~~~~--------~i~~l~~~i~~~~~  177 (206)
                      ...+    ..+++++|++++.        ++.++++.+.+.++
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            4443    3689999999983        57788888877665

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.7e-20  Score=123.88  Aligned_cols=165  Identities=27%  Similarity=0.581  Sum_probs=138.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++++++|..|.||||++++...+.|...+.++.+.....-....+...+++..|||.|++.+......++=.+..+|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            48999999999999999999999999999999999888876666555456899999999999999988888888999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      +||+...-+..+...|...+.+.+.     ++|+++++||.|.....   ... ....+.+. .++.++++|++.+.|++
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~---~k~-k~v~~~rk-knl~y~~iSaksn~Nfe  158 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK---VKA-KPVSFHRK-KNLQYYEISAKSNYNFE  158 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc---ccc-ccceeeec-ccceeEEeecccccccc
Confidence            9999999999999999999998876     88999999999986532   111 11112222 24889999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 028654          167 AAFECIAKNALKNEP  181 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (206)
                      .-|.|+.+.+.-.+.
T Consensus       159 kPFl~LarKl~G~p~  173 (216)
T KOG0096|consen  159 RPFLWLARKLTGDPS  173 (216)
T ss_pred             cchHHHhhhhcCCCC
Confidence            999999998866554

>PRK12735 elongation factor Tu; Reviewed

Probab=99.83  E-value=1.4e-19  Score=140.14  Aligned_cols=163  Identities=15%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ..+.++|+++|++++|||||+++|++...                ..+.....+.+  .....+.....++.|+||||+.
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCHH
Confidence            34578999999999999999999986210                01112233333  3333444445678999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCCCCcc-eecHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNSR-VVSEKKAKAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~-~~~~~~~~~~~  146 (206)
                      +|...+...+..+|++++|+|+.+....+. ..++..+...       ++|.+ +++||+|+...... ....+++..+.
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~-------gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l  158 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCeEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence            888777788889999999999986432221 2222222211       66755 67999999743111 11223455555


Q ss_pred             HHcC----CCcEEEeeccCCC----------CHHHHHHHHHHHHh
Q 028654          147 ASKG----NIPYFETSAKEGF----------NVEAAFECIAKNAL  177 (206)
Q Consensus       147 ~~~~----~~~~~~~s~~~~~----------~i~~l~~~i~~~~~  177 (206)
                      ...+    +.+++++|++++.          ++..|++.|.+.++
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            5543    3789999999984          57778877777654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.83  E-value=3e-19  Score=143.60  Aligned_cols=159  Identities=25%  Similarity=0.279  Sum_probs=100.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC------CeE-----E-----EEEEeeCCCcccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE------DRL-----F-----TLQIWDTAGQERF   70 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~G~~~~   70 (206)
                      .+..|+++|++++|||||+++|.+..+........+.+.........      +..     .     .+.||||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            34579999999999999999998765432222222111111111110      111     1     2689999999999


Q ss_pred             ccccccceecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----------
Q 028654           71 QSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----------  137 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----------  137 (206)
                      ...+...+..+|++++|+|+++   +.++..+..    +. .      .+.|+++++||+|+........          
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-~------~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~  153 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-R------RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK  153 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-H------cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence            8888888889999999999987   444443321    11 1      1779999999999863211000          


Q ss_pred             ----cHHH-------HHHHHHH--------------cCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          138 ----SEKK-------AKAWCAS--------------KGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       138 ----~~~~-------~~~~~~~--------------~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                          ..+.       +..+...              .+..+++++||++|.|++++++.+...+
T Consensus       154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                0000       1011111              1347899999999999999998886533

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.2e-18  Score=126.34  Aligned_cols=174  Identities=21%  Similarity=0.223  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc-------cccccccccceecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ERFQSLGVAFYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~~~~~~~~~~~~   81 (206)
                      .+++++|.|++|||||++.|++........+++|.......+.+.+  .+++++|+||.       ..........+++|
T Consensus        64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            5889999999999999999999988877888888888899999988  67888999992       12234566778999


Q ss_pred             cEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCC--------------------------------------------
Q 028654           82 DCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPE--------------------------------------------  116 (206)
Q Consensus        82 d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  116 (206)
                      |.+++|+|+..... .+.+.+.+...--... ...+                                            
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrln-k~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLN-KRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEec-CCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            99999999986554 3333332222100000 0011                                            


Q ss_pred             ------------------CCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH--
Q 028654          117 ------------------NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA--  176 (206)
Q Consensus       117 ------------------~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~--  176 (206)
                                        -+|.+.|.||+|+..       .++...+.+..   ..+++|+..+.|+++|.+.|.+.+  
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~l  290 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-------LEELERLARKP---NSVPISAKKGINLDELKERIWDVLGL  290 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-------HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhCe
Confidence                              129999999999875       24455554443   679999999999999999999976  


Q ss_pred             ---hhcCCCCCCCCCccccCCC
Q 028654          177 ---LKNEPQEEDYLPDTIDVGG  195 (206)
Q Consensus       177 ---~~~~~~~~~~~~~~~~~~~  195 (206)
                         +-.++.+.+..+++.-++.
T Consensus       291 iRVYtK~~g~~pd~~~PlIlr~  312 (365)
T COG1163         291 IRVYTKPPGEEPDFDEPLILRR  312 (365)
T ss_pred             EEEEecCCCCCCCCCCCeEEeC
Confidence               4445555555555554443

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.82  E-value=3.7e-19  Score=128.59  Aligned_cols=115  Identities=18%  Similarity=0.150  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------c---ccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------Y---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   73 (206)
                      +|+++|+.|+|||||+++|+.......             +   ....+.++......+.....++.+|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986421100             0   001111222222333334478899999999998888


Q ss_pred             cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      +..+++.+|++++|+|+++.... ....++..+...       ++|+++++||+|+...
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~-------~~P~iivvNK~D~~~a  131 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL-------NIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc-------CCCEEEEEECccccCC
Confidence            88899999999999999875432 223444433321       6799999999998753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.82  E-value=7e-20  Score=116.84  Aligned_cols=165  Identities=22%  Similarity=0.317  Sum_probs=119.5

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      +-..+++|+++|-.++|||||+..|.+.+.. ...|+.+  +..+.+.+.+ .+.+.+||.+|+...+..|..|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence            3356899999999999999999999887643 3344444  4444554443 4789999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +|||+|.++..-++.+..-+.++..   ......+|++|..||.|+.-+.........+.--......+.+-++|+..++
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~e  165 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLE  165 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccccc
Confidence            9999998888878776554444443   3333478999999999987543222222211111112223677889999999


Q ss_pred             CHHHHHHHHHHH
Q 028654          164 NVEAAFECIAKN  175 (206)
Q Consensus       164 ~i~~l~~~i~~~  175 (206)
                      |+.+-.+|+.+.
T Consensus       166 g~~dg~~wv~sn  177 (185)
T KOG0074|consen  166 GSTDGSDWVQSN  177 (185)
T ss_pred             CccCcchhhhcC
Confidence            999888888764

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.82  E-value=1.1e-19  Score=130.35  Aligned_cols=148  Identities=18%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeCCeEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT   58 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   58 (206)
                      +|+++|+.++|||||+.+|+.....                               .+....++.+.....+.+.  ...
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~--~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE--KYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC--CeE
Confidence            4899999999999999998643111                               1112223333333334333  468


Q ss_pred             EEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        59 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      +.+|||||+..+.......+..+|++++|+|+++..       ..+....+ ... ....     ..|+++++||+|+..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----~~~iiivvNK~Dl~~  151 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLA-RTLG-----VKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHH-HHcC-----CCeEEEEEEcccccc
Confidence            899999999887777777778899999999998742       11111111 111 1111     257999999999974


Q ss_pred             CCcc----eecHHHHHHHHHHcC----CCcEEEeeccCCCCHH
Q 028654          132 GNSR----VVSEKKAKAWCASKG----NIPYFETSAKEGFNVE  166 (206)
Q Consensus       132 ~~~~----~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~  166 (206)
                      ....    ....+.+..+....+    .++++++||++|.|++
T Consensus       152 ~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         152 VNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            2101    112223333333332    3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.82  E-value=1.8e-18  Score=115.78  Aligned_cols=160  Identities=18%  Similarity=0.276  Sum_probs=115.1

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-----cccc-----cceeeEEEEEEeCCeEEEEEEeeCCCccccccc
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-----YKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~   73 (206)
                      .+....+|+|+|+.++||||++.++........     ....     ++.-.......+. ....+.+++||||+++.-+
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHH
Confidence            356688999999999999999999988764211     1111     1111111112222 2257889999999999999


Q ss_pred             cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-CCC
Q 028654           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNI  152 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~  152 (206)
                      +..+.+.+.++|+++|.+.+..+ .....+.-+....      .+|++|++||.|+...    ...+.+++..... -..
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~------~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~~~~~  153 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN------PIPVVVAINKQDLFDA----LPPEKIREALKLELLSV  153 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc------CCCEEEEeeccccCCC----CCHHHHHHHHHhccCCC
Confidence            99999999999999999988777 3333333332221      2799999999999875    3455666555544 258


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHH
Q 028654          153 PYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      +++++++.++++..+.++.+...
T Consensus       154 ~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         154 PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ceeeeecccchhHHHHHHHHHhh
Confidence            99999999999999999888776

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.82  E-value=5.2e-19  Score=127.77  Aligned_cols=159  Identities=19%  Similarity=0.211  Sum_probs=121.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----cccccccc---eec
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~   80 (206)
                      ...+.++|.|++|||||++++..........+.+|.......+.+++.. ++.+-|.||.-+    ..-+-..+   +..
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence            3467899999999999999999988777777888887777776666543 488999999322    12222333   356


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           81 ADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        81 ~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++.++||+|++..   ..++.++.+..++..+-..  ..+.|.++|+||+|+.+.     ..+.++++.....+..++++
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~--L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~pv  347 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKG--LADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVPV  347 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhh--hccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEEe
Confidence            8999999999987   7888888877777665333  236799999999998632     22335778888876679999


Q ss_pred             eccCCCCHHHHHHHHHH
Q 028654          158 SAKEGFNVEAAFECIAK  174 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~  174 (206)
                      ||+.++++.++++.|.+
T Consensus       348 sA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  348 SAKSGEGLEELLNGLRE  364 (366)
T ss_pred             eeccccchHHHHHHHhh
Confidence            99999999999988765

>CHL00071 tufA elongation factor Tu

Probab=99.82  E-value=5.2e-19  Score=137.57  Aligned_cols=150  Identities=17%  Similarity=0.122  Sum_probs=98.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ....++|+++|++++|||||+++|++....                .+..++.+.+  .....+.....++.|+||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCChH
Confidence            345789999999999999999999864211                1122333332  2333344444678899999998


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~  146 (206)
                      ++...+...+..+|++++|+|+...-..+. ...+..+...       ++| +++++||+|+...... ....+++..+.
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~-------g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l  158 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV-------GVPNIVVFLNKEDQVDDEELLELVELEVRELL  158 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            888878888889999999999986432221 2222222211       667 7789999999753211 11223455555


Q ss_pred             HHcC----CCcEEEeeccCCCC
Q 028654          147 ASKG----NIPYFETSAKEGFN  164 (206)
Q Consensus       147 ~~~~----~~~~~~~s~~~~~~  164 (206)
                      ...+    .++++++|+.+|.+
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        159 SKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHhCCCCCcceEEEcchhhccc
Confidence            5443    37899999998863

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.81  E-value=7.9e-19  Score=138.86  Aligned_cols=158  Identities=20%  Similarity=0.232  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------cccccce--
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--   78 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~--   78 (206)
                      +..+|+++|.||+|||||+|++++........|+.|.+.....+.+.+.  .++++|+||.-.+.      ...+.++  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            3457999999999999999999999888888888888887777777774  47888999933222      1222333  


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|+++-|+|+++-+.--.+   .-++...       +.|++++.|++|......-..+.+.   +.+..+ +|+++++
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyl---tlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~~~---L~~~LG-vPVv~tv  145 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYL---TLQLLEL-------GIPMILALNMIDEAKKRGIRIDIEK---LSKLLG-VPVVPTV  145 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHH---HHHHHHc-------CCCeEEEeccHhhHHhcCCcccHHH---HHHHhC-CCEEEEE
Confidence            357999999999975432222   2223222       8899999999998765444444444   445566 9999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcC
Q 028654          159 AKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      |++|.|++++++.+.+....+.
T Consensus       146 A~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         146 AKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             eecCCCHHHHHHHHHHhccccc
Confidence            9999999999999998666555

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.81  E-value=6.4e-19  Score=136.60  Aligned_cols=149  Identities=15%  Similarity=0.127  Sum_probs=97.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ..+.++|+++|+.++|||||+++|++...                ..+.....+.+  ...+.+......+.||||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            34578999999999999999999974210                11122333333  3444455555688999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCCCCccee-cHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNSRVV-SEKKAKAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~~~-~~~~~~~~~  146 (206)
                      +|...+...+..+|++++|+|+.+....+.. +.+..+...       ++|.+ +++||+|+.+...... ..+++..+.
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l  158 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence            8887777777889999999999873222221 222222211       56755 6899999975321111 223555566


Q ss_pred             HHcC----CCcEEEeeccCCC
Q 028654          147 ASKG----NIPYFETSAKEGF  163 (206)
Q Consensus       147 ~~~~----~~~~~~~s~~~~~  163 (206)
                      ...+    +++++++|+.++.
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       159 SEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HhcCCCccCccEEECcccccc
Confidence            5553    2789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.81  E-value=6.4e-19  Score=126.23  Aligned_cols=157  Identities=18%  Similarity=0.183  Sum_probs=97.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcc--------------cccceeeEEEEE----------------------EeC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYK--------------ATIGADFLTKEV----------------------QFE   53 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~--------------~~~~~~~~~~~~----------------------~~~   53 (206)
                      ||+++|+.++|||||+++|..+.+.....              .+.+.......+                      .+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            58899999999999999998765532111              000000000000                      001


Q ss_pred             CeEEEEEEeeCCCcccccccccccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      .....+.++||||++.+.......+.  .+|++++|+|+........ ..++..+...       ++|+++|+||+|+..
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~-------~ip~ivvvNK~D~~~  152 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL-------NIPVFVVVTKIDLAP  152 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEECccccC
Confidence            11356889999999988776665554  6899999999886433222 2222222211       779999999999875


Q ss_pred             CCcceecHHHHHHHHHH-------------------------cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654          132 GNSRVVSEKKAKAWCAS-------------------------KGNIPYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       132 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                      ........+++..+...                         ....+++.+|+.+|+|+++|...|..
T Consensus       153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            43223333333333321                         11348999999999999999877743

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=7.4e-19  Score=135.09  Aligned_cols=171  Identities=18%  Similarity=0.211  Sum_probs=127.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------SNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~   69 (206)
                      ++..++.|+-+-..|||||..+|+....               ..++..+.|.......+.+ ++..+.+.++||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            4567899999999999999999975432               1234445555444444444 35678899999999999


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK  149 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (206)
                      |.......+..++++++++|++..-.-+....++..+..        +..+|.|+||+|++.++...+..+....| ...
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~V~~q~~~lF-~~~  208 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPERVENQLFELF-DIP  208 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHHHHHHHHHHh-cCC
Confidence            999999999999999999999976555566666555543        66799999999999875444333222222 223


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCC
Q 028654          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDY  186 (206)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~  186 (206)
                       ..+++.+||++|.++.++++.|++.++..+.....+
T Consensus       209 -~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~p  244 (650)
T KOG0462|consen  209 -PAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAP  244 (650)
T ss_pred             -ccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcc
Confidence             368999999999999999999999998766554443

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=6.7e-19  Score=125.91  Aligned_cols=113  Identities=25%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-------------------cccccceeeEEEEEEe---CCeEEEEEEeeCCCc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------YKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ   67 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   67 (206)
                      +|+++|+.++|||||+++|+.......                   .....+.......+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987543321                   0111111111111211   345688999999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      .++......++..+|++++|+|+++..+... ..++.....       .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccC
Confidence            9988888888899999999999987655432 233333221       157999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.80  E-value=2.1e-18  Score=133.53  Aligned_cols=162  Identities=15%  Similarity=0.130  Sum_probs=104.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      .+.++|+++|+.++|||||+++|++...                ..+.....+.+  .....+.....++.|+||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence            5678999999999999999999986311                01112333333  33344444456788999999988


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCCCCcc-eecHHHHHHHHH
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNSR-VVSEKKAKAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~~~~~-~~~~~~~~~~~~  147 (206)
                      |.......+..+|++++|+|+........ ..++..+...       ++|.+ +++||+|+...... ....+++..+..
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~-------g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~  159 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc-------CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence            88777788899999999999986432222 2222222211       66875 68999999753111 112234444444


Q ss_pred             Hc----CCCcEEEeeccCCC----------CHHHHHHHHHHHHh
Q 028654          148 SK----GNIPYFETSAKEGF----------NVEAAFECIAKNAL  177 (206)
Q Consensus       148 ~~----~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~  177 (206)
                      ..    .+++++++|++++.          ++..+++.|.+.+.
T Consensus       160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            43    24789999999875          45666666666543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.80  E-value=2.1e-18  Score=135.58  Aligned_cols=149  Identities=17%  Similarity=0.108  Sum_probs=97.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ..+.++|+++|+.++|||||+++|+....                ..+.....+.  ......+......+.|+|+||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi--~~~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITI--NTATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeE--EEEEEEEecCCcEEEEEECCCHH
Confidence            45678999999999999999999985211                1122222222  22233333334578899999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWC  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~  146 (206)
                      +|...+...+..+|++++|+|+.+....+. .+++..+...       ++| +++++||+|+.+.... ....+++..+.
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l  227 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVRELL  227 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence            998888888889999999999986433222 2222222211       667 7789999999753211 11222445555


Q ss_pred             HHc----CCCcEEEeeccCCC
Q 028654          147 ASK----GNIPYFETSAKEGF  163 (206)
Q Consensus       147 ~~~----~~~~~~~~s~~~~~  163 (206)
                      ...    .+.+++++|+.++.
T Consensus       228 ~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        228 SSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HhcCCCcCcceEEEEEccccc
Confidence            443    25789999998874

>COG2262 HflX GTPases [General function prediction only]

Probab=99.80  E-value=3.1e-18  Score=128.20  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=117.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc---------ccccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~   76 (206)
                      ...+.|.++|.+|+|||||+|+|++........-+.|.+.+...+.+.+ ...+.+.||-|.         +.|.+. ..
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-LE  267 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-LE  267 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-HH
Confidence            4577899999999999999999998877666666667777777777764 346677899992         223222 22


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ....+|+++.|+|++++...+.+......+...    +...+|+|+|.||+|+.....      .... ..... ...+.
T Consensus       268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el----~~~~~p~i~v~NKiD~~~~~~------~~~~-~~~~~-~~~v~  335 (411)
T COG2262         268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI----GADEIPIILVLNKIDLLEDEE------ILAE-LERGS-PNPVF  335 (411)
T ss_pred             HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc----CCCCCCEEEEEecccccCchh------hhhh-hhhcC-CCeEE
Confidence            346799999999999986666655544444333    223689999999999876421      1111 12221 15799


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +||+++.|++.|++.|.+.+......
T Consensus       336 iSA~~~~gl~~L~~~i~~~l~~~~~~  361 (411)
T COG2262         336 ISAKTGEGLDLLRERIIELLSGLRTE  361 (411)
T ss_pred             EEeccCcCHHHHHHHHHHHhhhcccc
Confidence            99999999999999999988865443

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.80  E-value=5.2e-18  Score=119.78  Aligned_cols=162  Identities=16%  Similarity=0.223  Sum_probs=95.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccce---eeEEEEEEeCCeEEEEEEeeCCCccccccccc-----ccee
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA---DFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV-----AFYR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~   79 (206)
                      +++|+++|.+|+|||||+|+|.+...........+.   ......+.. .....+.+|||||.........     ..+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986543222111111   111111111 1123689999999643222222     2256


Q ss_pred             cCcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc---------eecHHHHHHHHH--
Q 028654           80 GADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR---------VVSEKKAKAWCA--  147 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---------~~~~~~~~~~~~--  147 (206)
                      .+|+++++.+..    +... ..|+..+...       +.|+++|+||+|+......         ....+.+.+...  
T Consensus        80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  148 (197)
T cd04104          80 EYDFFIIISSTR----FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN  148 (197)
T ss_pred             CcCEEEEEeCCC----CCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence            789988885432    2222 3344444332       5689999999998542211         111222222222  


Q ss_pred             --H--cCCCcEEEeecc--CCCCHHHHHHHHHHHHhhcCC
Q 028654          148 --S--KGNIPYFETSAK--EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       148 --~--~~~~~~~~~s~~--~~~~i~~l~~~i~~~~~~~~~  181 (206)
                        .  ....+++.+|+.  .+.|+..+.+.|...+++...
T Consensus       149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence              1  223578999998  578999999999999987543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PLN03127 Elongation factor Tu; Provisional

Probab=99.79  E-value=4.1e-18  Score=133.23  Aligned_cols=162  Identities=17%  Similarity=0.120  Sum_probs=102.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC------CC----------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR------KF----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      .+.++|+++|+.++|||||+++|.+.      ..          ..+..++.+.+.  ....+.....++.|+||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence            45789999999999999999999632      10          112223333333  3344444456889999999988


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceec-HHHHHHHHH
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVS-EKKAKAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~-~~~~~~~~~  147 (206)
                      +...+...+..+|++++|+|+.+....+. ...+..+.. .      ++| +++++||+|+.+....... .+++..+..
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~-~------gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~  208 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-V------GVPSLVVFLNKVDVVDDEELLELVEMELRELLS  208 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH-c------CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence            87777777788999999999976432221 122222211 1      678 5789999999753211111 123333333


Q ss_pred             Hc----CCCcEEEeecc---CCCC-------HHHHHHHHHHHHh
Q 028654          148 SK----GNIPYFETSAK---EGFN-------VEAAFECIAKNAL  177 (206)
Q Consensus       148 ~~----~~~~~~~~s~~---~~~~-------i~~l~~~i~~~~~  177 (206)
                      ..    ..++++++|+.   ++.|       +..|++.|.+.++
T Consensus       209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            32    13788888875   4444       6777777777654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.79  E-value=3e-18  Score=122.26  Aligned_cols=113  Identities=20%  Similarity=0.162  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC----------------CcccccceeeEEEEEEeC--------CeEEEEEEeeCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKATIGADFLTKEVQFE--------DRLFTLQIWDTA   65 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   65 (206)
                      +|+++|+.++|||||+.+|+......                +.....+.......+.+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            78999999999999999997543210                111112222212222332        346889999999


Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      |+.++......++..+|++++|+|+.+....+.. ..+.....       .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~-------~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK-------ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECCCcc
Confidence            9999999999999999999999999976544432 22222211       167999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.4e-19  Score=114.75  Aligned_cols=164  Identities=20%  Similarity=0.288  Sum_probs=116.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ...+|+++|..|+||||+..++.-... ....|+.+...  ..+.+  +++.+++||..|+...+..|+.|+.+.|++||
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            467999999999999999877754443 23345544333  33333  55899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|.+|.+........+..+   ..+....+..+++++||.|......+.+....+..-......+.++.+||.+|+|++
T Consensus        92 VVDssd~dris~a~~el~~m---L~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld  168 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSM---LQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD  168 (182)
T ss_pred             EEeccchhhhhhhHHHHHHH---hccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence            99999987665543322222   233333356788999999987643222222222222222333789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ..++|+.+.+..
T Consensus       169 ~~~DWL~~~l~~  180 (182)
T KOG0072|consen  169 PAMDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.79  E-value=4.7e-19  Score=137.05  Aligned_cols=168  Identities=20%  Similarity=0.236  Sum_probs=123.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|..|+||||||-++....+.+...+-.......  ..+....+...++|++...+.+......++.||++++
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            47999999999999999999999988875444332221112  3344444568899999877777777888999999999


Q ss_pred             EEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-CCcEEEeeccCCCC
Q 028654           87 VYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFN  164 (206)
Q Consensus        87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  164 (206)
                      +|+.+++++.+.+ .+|+..+......  .-++|+|+|+||+|........... ....+...+. .-.+++|||++..+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~d~~~~~~~s~e~-~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGD--YHETPVILVGNKSDNGDNENNSDEV-NTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCC--CccCCEEEEeeccCCccccccchhH-HHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            9999999999998 5677777665422  2278999999999998653331111 1222222222 23579999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028654          165 VEAAFECIAKNALKN  179 (206)
Q Consensus       165 i~~l~~~i~~~~~~~  179 (206)
                      +.++|+...++++..
T Consensus       163 ~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  163 VSELFYYAQKAVIHP  177 (625)
T ss_pred             hHhhhhhhhheeecc
Confidence            999999999887653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.78  E-value=4.5e-19  Score=138.66  Aligned_cols=153  Identities=18%  Similarity=0.249  Sum_probs=101.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (206)
                      ..+.++|+++|+.++|||||+.+|+.....                               .+.....  ++......+.
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGi--Ti~~~~~~~~   81 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGI--TIDIALWKFE   81 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCc--eEEEEEEEec
Confidence            345789999999999999999988742110                               1112222  2223333344


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCCCCCCc-EEEEee
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD-------NLNNWREEFLIQASPSDPENFP-FVVLGN  125 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~p-viiv~n  125 (206)
                      .....+.++|+||+++|...+...+..+|++|+|+|+++.. ++       ...+.+.... ..      ++| +++++|
T Consensus        82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~-~~------gi~~iIV~vN  153 (447)
T PLN00043         82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAF-TL------GVKQMICCCN  153 (447)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHH-Hc------CCCcEEEEEE
Confidence            45578899999999999999999999999999999998631 11       1222212111 11      564 788999


Q ss_pred             CCCCCCCCc----ceecHHHHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654          126 KTDVDGGNS----RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       126 K~D~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (206)
                      |+|+....-    .....+++..+....+    .++++++|+++|+|+.+
T Consensus       154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            999862110    1123455666666554    37899999999999853

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=8.5e-18  Score=129.63  Aligned_cols=164  Identities=20%  Similarity=0.199  Sum_probs=122.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-eEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ++=|.++|+...|||||+..+-+........-..|..+....+..+. ....+.|+|||||+.|..+...-.+-+|.+|+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            45678999999999999999988887766667777777777777652 34588999999999999999888889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--HHHH-cCCCcEEEeeccCCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCAS-KGNIPYFETSAKEGF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~~~~~  163 (206)
                      |+++++.-..+..... .... .      .+.|+++++||+|.++.+...+..+..+.  .... .+...++++||++|+
T Consensus        85 VVa~dDGv~pQTiEAI-~hak-~------a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          85 VVAADDGVMPQTIEAI-NHAK-A------AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEccCCcchhHHHHH-HHHH-H------CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999984333332221 1111 1      18899999999999976554444443332  1112 235789999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 028654          164 NVEAAFECIAKNALKN  179 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~  179 (206)
                      |+++|++.|+-.+-..
T Consensus       157 Gi~eLL~~ill~aev~  172 (509)
T COG0532         157 GIDELLELILLLAEVL  172 (509)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999988765444

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.78  E-value=5.1e-18  Score=132.52  Aligned_cols=168  Identities=13%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCC---CCCcccccceeeEEEEE---------------EeCC-----------
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEV---------------QFED-----------   54 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~-----------   54 (206)
                      .++..++|+++|+...|||||+.+|++...   ..+.....+.+......               .+..           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            356789999999999999999999997432   22222222211111000               0000           


Q ss_pred             -----eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           55 -----RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        55 -----~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                           ....+.|+|+||++.|...+...+..+|++++|+|+.+.. ..+.. +.+. +.....     -.++++|+||+|
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~-i~~~lg-----i~~iIVvlNKiD  182 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLA-AVEIMK-----LKHIIILQNKID  182 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHH-HHHHcC-----CCcEEEEEeccc
Confidence                 0236889999999999888888889999999999998631 22221 2222 122211     125899999999


Q ss_pred             CCCCCcceecHHHHHHHHHH--cCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          129 VDGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      +.+........+++..+...  ....+++++||++|.|++.|++.|.+.++.
T Consensus       183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI  234 (460)
T ss_pred             ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence            97532222333444444332  135799999999999999999999986654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.77  E-value=1.2e-17  Score=131.79  Aligned_cols=155  Identities=19%  Similarity=0.124  Sum_probs=96.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------------------------------ccccceeeEEEEEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY---------------------------------KATIGADFLTKEVQ   51 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~   51 (206)
                      ....++|+++|+.++|||||+++|+........                                 ....+.+.  ....
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~--~~~~  101 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV--AYRY  101 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe--eEEE
Confidence            356799999999999999999999754321110                                 11112222  2222


Q ss_pred             eCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        52 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      +.....++.|+||||+..|...+...+..+|++++|+|+...-.......+  .+.....     ..++++++||+|+..
T Consensus       102 ~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg-----~~~iIvvvNKiD~~~  174 (474)
T PRK05124        102 FSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLG-----IKHLVVAVNKMDLVD  174 (474)
T ss_pred             eccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhC-----CCceEEEEEeecccc
Confidence            333346789999999988877777778899999999999764221111111  1111111     236899999999975


Q ss_pred             CCcc--eecHHHHHHHHHHc---CCCcEEEeeccCCCCHHHH
Q 028654          132 GNSR--VVSEKKAKAWCASK---GNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~l  168 (206)
                      ....  ....+++..+....   ...+++++|+++|.|+.++
T Consensus       175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            3211  11112222333332   2478999999999999865

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.77  E-value=8.1e-18  Score=131.74  Aligned_cols=154  Identities=17%  Similarity=0.204  Sum_probs=98.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (206)
                      ..+.++|+++|+.++|||||+.+|+....                               ..+.....+.+.  ....+.
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~--~~~~~~   81 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI--ALWKFE   81 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEe--eeEEEc
Confidence            34578999999999999999999875211                               011122223333  333344


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---F---DNLNNWREEFLIQASPSDPENFP-FVVLGNK  126 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK  126 (206)
                      .....+.|+||||+.+|...+...+..+|++++|+|+.....   +   ....+.+..+.. .      ++| +|+++||
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~------gi~~iiv~vNK  154 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-L------GVKQMIVCINK  154 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-c------CCCeEEEEEEc
Confidence            445788999999999999888888999999999999986420   0   111121122211 1      656 6799999


Q ss_pred             CCCCC--C--CcceecHHHHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654          127 TDVDG--G--NSRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       127 ~D~~~--~--~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (206)
                      +|...  .  .......+++..+....+    .++++++|+.+|+|+.+
T Consensus       155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            99542  1  111222334444444332    37899999999999864

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.77  E-value=3.7e-18  Score=121.75  Aligned_cols=175  Identities=19%  Similarity=0.273  Sum_probs=108.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-----cccceecCcE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----GVAFYRGADC   83 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~~~~~~d~   83 (206)
                      ||+++|+.+|||||+.+.++.+-.+. ...-..|.+.....+... ..+.+.+||+||+..+...     ....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            78999999999999999998775432 222223344444444322 2358999999998755443     4567899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH----HHHcC--CCcEEEe
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW----CASKG--NIPYFET  157 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~  157 (206)
                      +|||+|+.+.+-.+.+.++...+......  .++..+.+++.|+|+.....+....+...+.    +...+  ...++.|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            99999998544444444433333322211  2277899999999998765454444443332    22222  2678888


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcCCCCCCCCC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNEPQEEDYLP  188 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~  188 (206)
                      |..+ ..+-+.+..|++.+..+.+.-+..+.
T Consensus       158 SI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~  187 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLIPNLSTLENLLN  187 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTSTTHCCCCCCCC
T ss_pred             cCcC-cHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            8887 59999999999999887777555543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.8e-17  Score=121.21  Aligned_cols=167  Identities=17%  Similarity=0.129  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc----cccccc---eecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVAF---YRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~~~~~~---~~~~   81 (206)
                      .-|.++|.|++|||||++.+..........+.+|.......+.+ ...-.+.+-|.||--+-.    -+-..+   +..+
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            45779999999999999999998877777888888777777776 333468888999932211    122233   3568


Q ss_pred             cEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           82 DCCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        82 d~vi~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      .++++|+|++..+   ..++......++..+-...  .+.|.+||+||+|+..+  .....+..+.+........++.+|
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L--~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~IS  314 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL--AEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLIS  314 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh--ccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceeee
Confidence            8999999998644   3555666666666653322  26799999999997654  223333333334444433333399


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcC
Q 028654          159 AKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +.++.|++++...+.+.+.+..
T Consensus       315 a~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         315 ALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hhcccCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887765

>cd04169 RF3 RF3 subfamily

Probab=99.76  E-value=3.4e-17  Score=120.26  Aligned_cols=116  Identities=22%  Similarity=0.238  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc---------c-----------ccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK---------A-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      .+|+++|++|+|||||+++|+.........         .           ..+.++......+......+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            589999999999999999997532110000         0           01122333333444455789999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ++.......++.+|++++|+|+++..... ...++.....       .++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-------~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-------RGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-------cCCCEEEEEECCccCCC
Confidence            88877777889999999999998643221 2233322211       17799999999998765

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.76  E-value=1.3e-17  Score=122.63  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=88.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   71 (206)
                      +|+++|++++|||||+++|+.....                  .+.....+.......+.+.+  .++.++||||+.++.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            5899999999999999999742211                  11222333333334444443  678899999998888


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+..+++.+|++++|+|+.+...... ...+..+..       .++|+++++||+|+.+.. .....++++........
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-------~~~p~ivviNK~D~~~a~-~~~~~~~l~~~l~~~~~  149 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-------YNVPRIAFVNKMDRTGAD-FFRVVEQIREKLGANPV  149 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCce
Confidence            888889999999999999986432222 222222221       167999999999987642 12223344433332222


Q ss_pred             CcEEEeecc
Q 028654          152 IPYFETSAK  160 (206)
Q Consensus       152 ~~~~~~s~~  160 (206)
                      ...+++|+.
T Consensus       150 ~~~~Pisa~  158 (270)
T cd01886         150 PLQLPIGEE  158 (270)
T ss_pred             EEEeccccC
Confidence            345666665

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01850 CDC_Septin CDC/Septin

Probab=99.76  E-value=3.5e-17  Score=120.77  Aligned_cols=146  Identities=14%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc----
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----   72 (206)
                      ..++|+++|.+|+|||||+|+|++..+...          ..++.+.......+..++..+.+.+|||||..+...    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999998876533          233334444555566677788999999999322110    


Q ss_pred             ----------------------cccccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           73 ----------------------LGVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        73 ----------------------~~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                                            .....+.  .+|+++|+++.+.......-..++..+    ..    ++|+++|+||+|
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l----~~----~v~vi~VinK~D  154 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL----SK----RVNIIPVIAKAD  154 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH----hc----cCCEEEEEECCC
Confidence                                  0102222  478899999877421111102222222    11    578999999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      +..........+.+...+...+ ++++......
T Consensus       155 ~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~~  186 (276)
T cd01850         155 TLTPEELKEFKQRIMEDIEEHN-IKIYKFPEDE  186 (276)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcC-CceECCCCCc
Confidence            9754333344445555556655 7778766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.76  E-value=3.1e-17  Score=124.50  Aligned_cols=174  Identities=16%  Similarity=0.182  Sum_probs=127.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCcccccceeeEEEEEEe---CCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------SNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   67 (206)
                      .+..+..++-+-..|||||..+++....               ..+...+.|.......+.+   ++..+.+.++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            3456788999999999999999976432               1234445555555555544   457899999999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~  147 (206)
                      .+|.-.....+..|.++++++|++..-.-+.++..+..+..        +.-++.|+||+||+.++...+ .++++...-
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adperv-k~eIe~~iG  157 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADPERV-KQEIEDIIG  157 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCHHHH-HHHHHHHhC
Confidence            99998888899999999999999975545555555555532        667999999999987743332 222332221


Q ss_pred             HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCc
Q 028654          148 SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD  189 (206)
Q Consensus       148 ~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~  189 (206)
                       ......+.+||++|.|++++++.|++.++.....+..++..
T Consensus       158 -id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkA  198 (603)
T COG0481         158 -IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKA  198 (603)
T ss_pred             -CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceE
Confidence             22356789999999999999999999999877665555443

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.76  E-value=1.6e-17  Score=129.09  Aligned_cols=150  Identities=19%  Similarity=0.161  Sum_probs=94.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC---------------------------------CcccccceeeEEEEEEeCCe
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSN---------------------------------QYKATIGADFLTKEVQFEDR   55 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   55 (206)
                      ++|+++|+.++|||||+++|+......                                 +.....+.+.....  +...
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~--~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRY--FSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEE--EccC
Confidence            589999999999999999997433211                                 11111222222222  2233


Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~  135 (206)
                      ...+.|+||||+++|...+...+..+|++++|+|+......+....+ . +.....     ..++++++||+|+......
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~-~~~~~~-----~~~iivviNK~D~~~~~~~  151 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-Y-IASLLG-----IRHVVLAVNKMDLVDYDEE  151 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-H-HHHHcC-----CCcEEEEEEecccccchHH
Confidence            45788999999999887777788999999999999864322221111 1 111111     2258899999999753211


Q ss_pred             --eecHHHHHHHHHHcC--CCcEEEeeccCCCCHHH
Q 028654          136 --VVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       136 --~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~  167 (206)
                        ....+++..+....+  ..+++++||.+|+|+++
T Consensus       152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence              011223333333333  36799999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.76  E-value=6.7e-17  Score=120.95  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=102.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe---------------------CC-eEEEEEEeeCCCc-
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------ED-RLFTLQIWDTAGQ-   67 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~-   67 (206)
                      |+++|.+++|||||+|+|++........+.++.+.......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999998765444444443333322221                     22 3467999999996 


Q ss_pred             ---ccccccccc---ceecCcEEEEEEECCCh-------------hhHHHHHHHHHH---------------HH------
Q 028654           68 ---ERFQSLGVA---FYRGADCCVLVYDVNVM-------------KSFDNLNNWREE---------------FL------  107 (206)
Q Consensus        68 ---~~~~~~~~~---~~~~~d~vi~v~d~~~~-------------~~~~~~~~~~~~---------------~~------  107 (206)
                         ++.......   .++.+|++++|+|++..             +...++.....+               +.      
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               333333233   47899999999999731             111111110000               00      


Q ss_pred             -----------------------HhcCC-C--------------------CCCCCcEEEEeeCCCCCCCCcceecHHHHH
Q 028654          108 -----------------------IQASP-S--------------------DPENFPFVVLGNKTDVDGGNSRVVSEKKAK  143 (206)
Q Consensus       108 -----------------------~~~~~-~--------------------~~~~~pviiv~nK~D~~~~~~~~~~~~~~~  143 (206)
                                             ..+.. .                    ....+|+++|+||+|+....   .   ...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~---~~~  234 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---N---NIS  234 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---H---HHH
Confidence                                   00000 0                    01246999999999975321   1   112


Q ss_pred             HHHHHcCCCcEEEeeccCCCCHHHHHH-HHHHHHhhcCCC
Q 028654          144 AWCASKGNIPYFETSAKEGFNVEAAFE-CIAKNALKNEPQ  182 (206)
Q Consensus       144 ~~~~~~~~~~~~~~s~~~~~~i~~l~~-~i~~~~~~~~~~  182 (206)
                      .+........++++||+.+.+++++.+ .+.+.+++.++.
T Consensus       235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f  274 (318)
T cd01899         235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF  274 (318)
T ss_pred             HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence            222233346899999999999999998 699998876554

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.73  E-value=1.9e-16  Score=126.10  Aligned_cols=118  Identities=21%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------------cccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ...+|+++|+.++|||||.++|+.......                    .....+.++......+......+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            457999999999999999999964211000                    000112223233333333447889999999


Q ss_pred             ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      +.++......++..+|++|+|+|+++..... ...++.....       .++|+++++||+|+...
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~-------~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL-------RDTPIFTFINKLDRDGR  146 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh-------cCCCEEEEEECCccccc
Confidence            9998887788889999999999998743221 2233322211       27899999999998653

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=2.7e-17  Score=117.13  Aligned_cols=166  Identities=16%  Similarity=0.265  Sum_probs=110.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEE-EeCCeEEEEEEeeCCCcc-------ccccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV-QFEDRLFTLQIWDTAGQE-------RFQSLGVAF   77 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~-------~~~~~~~~~   77 (206)
                      ..+++|+++|.+|+|||||+|+|+++...+...-..+.+...... .+++  -.+.+||+||-.       +++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence            467899999999999999999999765443222222222222222 2333  478899999933       366667788


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-------------ceecHHHHH-
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-------------RVVSEKKAK-  143 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-------------~~~~~~~~~-  143 (206)
                      +.+.|.+++++++.++.--.+ .+++..+.....     +.++++++|.+|...+..             ++...+... 
T Consensus       115 l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~  188 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEA  188 (296)
T ss_pred             hhhccEEEEeccCCCccccCC-HHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHH
Confidence            899999999999998654333 344444443332     468999999999765410             111222222 


Q ss_pred             --HHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          144 --AWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       144 --~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                        .+++.-  .|++..+...+.|++.+...++.+++....
T Consensus       189 ~~~~~q~V--~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         189 LGRLFQEV--KPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             HHHHHhhc--CCeEEeccccCccHHHHHHHHHHhCccccc
Confidence              233332  467777889999999999999998875443

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=2.4e-17  Score=119.47  Aligned_cols=190  Identities=17%  Similarity=0.146  Sum_probs=129.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccceeeEEEEE--------------------EeC----CeEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEV--------------------QFE----DRLFT   58 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~   58 (206)
                      +..++|.++|+..-|||||..+|.+--   +..+.....+........                    ...    .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            678999999999999999999998732   111111111111100000                    000    11346


Q ss_pred             EEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec
Q 028654           59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS  138 (206)
Q Consensus        59 ~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~  138 (206)
                      +.|+|.||++-+-..+.+-..-.|++++|+.++.+.......+.+..+.-.-      -..++++-||+|+.......+.
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig------ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG------IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc------cceEEEEecccceecHHHHHHH
Confidence            7899999999988888888888999999999998655444444444443221      2258999999999987666777


Q ss_pred             HHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCC
Q 028654          139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSG  203 (206)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (206)
                      ++++.+|.+..  .+.|++++||..+.|++.|++.|.+.++....  ....|..+-+-.+++..|.|
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r--d~~~~p~m~v~RSFDVNkPG  226 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER--DLDKPPRMYVARSFDVNKPG  226 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc--CCCCCceEEEEeecccCCCC
Confidence            88888887653  35899999999999999999999999887444  33344444444444444443

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.72  E-value=1.7e-17  Score=126.46  Aligned_cols=168  Identities=15%  Similarity=0.056  Sum_probs=120.1

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------ccccc-
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVA-   76 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~-   76 (206)
                      ...+...++++|.|++|||||+|.+...+....+.++++.......+.+  +...++++||||.-...      ..+.. 
T Consensus       164 IDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy--kYlrwQViDTPGILD~plEdrN~IEmqsI  241 (620)
T KOG1490|consen  164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY--KYLRWQVIDTPGILDRPEEDRNIIEMQII  241 (620)
T ss_pred             CCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh--heeeeeecCCccccCcchhhhhHHHHHHH
Confidence            3455678999999999999999999999888888888877666555443  34678899999922111      11111 


Q ss_pred             -ce-ecCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654           77 -FY-RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        77 -~~-~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                       ++ +--.+|+|++|++..+  +...-..+++.+...+.     |.|+|+|+||+|...........+++-+.....+++
T Consensus       242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v  316 (620)
T KOG1490|consen  242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV  316 (620)
T ss_pred             HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence             11 2245899999999754  44555667777877776     789999999999987644444343444444455569


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          153 PYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      +++++|..+.+|+.++.....++++.
T Consensus       317 ~v~~tS~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  317 KVVQTSCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             eEEEecccchhceeeHHHHHHHHHHH
Confidence            99999999999998877766665543

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.72  E-value=8.3e-17  Score=131.66  Aligned_cols=153  Identities=20%  Similarity=0.148  Sum_probs=94.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------------------------------cccccceeeEEEEEEe
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------------------------------YKATIGADFLTKEVQF   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~   52 (206)
                      ...++|+++|++++|||||+++|+.......                                 ...+.+.+.....  +
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~--~   99 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY--F   99 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE--E
Confidence            4568999999999999999999986432211                                 0011111121122  2


Q ss_pred             CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ......+.|+||||++.+...+...+..+|++++|+|+......+.. ..+..+. ...     ..++++++||+|+...
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e~~~~~~-~~~-----~~~iivvvNK~D~~~~  172 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-RHSFIAS-LLG-----IRHVVLAVNKMDLVDY  172 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-HHHHHHH-HhC-----CCeEEEEEEecccccc
Confidence            22335778999999988877677778899999999999764322111 1111111 111     2468899999999752


Q ss_pred             Ccc--eecHHHHHHHHHHcC--CCcEEEeeccCCCCHHH
Q 028654          133 NSR--VVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       133 ~~~--~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~  167 (206)
                      ...  ....+++..+....+  ..+++++||++|.|+.+
T Consensus       173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111  111223333333333  35799999999999874

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=2.9e-16  Score=121.08  Aligned_cols=161  Identities=23%  Similarity=0.204  Sum_probs=118.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .+.-|-++|+..-|||||+..|-+..+......+.+..+....+.... .-.++|+||||+..|..+...-..-+|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            355678999999999999999988877666666666666666666663 3689999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--HHHH-cCCCcEEEeeccCCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCAS-KGNIPYFETSAKEGF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~~~~~  163 (206)
                      |+.+.|.-..+..+..     +++.   ..+.|+++.+||+|.++.+...+..+....  .... .++..++++||++|+
T Consensus       231 VVAadDGVmpQT~EaI-----khAk---~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  231 VVAADDGVMPQTLEAI-----KHAK---SANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEccCCccHhHHHHH-----HHHH---hcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            9999884333322111     1111   128899999999998876433332222221  1112 346889999999999


Q ss_pred             CHHHHHHHHHHHH
Q 028654          164 NVEAAFECIAKNA  176 (206)
Q Consensus       164 ~i~~l~~~i~~~~  176 (206)
                      |++.|-+.++-.+
T Consensus       303 nl~~L~eaill~A  315 (683)
T KOG1145|consen  303 NLDLLEEAILLLA  315 (683)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999999887655

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.72  E-value=1.3e-17  Score=114.05  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=76.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe-CCeEEEEEEeeCCCccccccccccc---eecCcEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADCC   84 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~---~~~~d~v   84 (206)
                      -.|+++|+.|||||+|+..|..+.......+.   .. .....+ ......+.++|+||+.+.+......   ...+.++
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---EN-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---S---SE-EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cC-CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            47899999999999999999988543322222   11 111112 1233467889999999988755554   7789999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           85 VLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        85 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      |||+|.+. ......+++++..+....... ....|++|+.||.|+..+.
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT--
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCccccccC
Confidence            99999974 455666777777766554422 3378999999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.72  E-value=2.2e-16  Score=102.26  Aligned_cols=106  Identities=20%  Similarity=0.272  Sum_probs=69.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc---------cccccccee
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFYR   79 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   79 (206)
                      +|+++|.+|+|||||+|+|++... .....+..+.......+.+.+.  .+.++||||-..-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998643 2333344444444455556663  4569999993211         111233347


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  126 (206)
                      .+|++++|+|++++.. +....++..+.        .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence            8999999999876322 22233333331        17799999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13351 elongation factor G; Reviewed

Probab=99.71  E-value=1.5e-16  Score=131.52  Aligned_cols=116  Identities=19%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ...+|+++|+.++|||||+++|+......                  ......+.......+.+.  ...+.+|||||+.
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~   84 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHI   84 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcH
Confidence            46799999999999999999998532110                  001111222222233333  4788999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ++...+..+++.+|++++|+|+++.........| ..+..       .++|+++|+||+|+...
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-------YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCCCCCC
Confidence            9888888899999999999999876555443333 22221       16799999999998754

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=3e-16  Score=115.99  Aligned_cols=154  Identities=19%  Similarity=0.258  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   71 (206)
                      +|+++|++|+|||||+++|+........                  ....+.......+.+.  ...+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence            5899999999999999998753321100                  0111122222233333  3678899999998887


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+..++..+|++++|+|+++.........| ..+..       .++|+++++||+|+....    ..+....+....+ 
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~-------~~~p~iivvNK~D~~~~~----~~~~~~~l~~~~~-  145 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE-------AGIPRIIFINKMDRERAD----FDKTLAALQEAFG-  145 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEECCccCCCC----HHHHHHHHHHHhC-
Confidence            7788889999999999999875544332222 22221       167999999999987642    2233344444443 


Q ss_pred             CcE--EEeeccCCCCHHHHHHHHHHHHhh
Q 028654          152 IPY--FETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       152 ~~~--~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      .++  +.+...++.++..+.+.+...++.
T Consensus       146 ~~~~~~~ip~~~~~~~~~~vd~~~~~~~~  174 (268)
T cd04170         146 RPVVPLQLPIGEGDDFKGVVDLLTEKAYI  174 (268)
T ss_pred             CCeEEEEecccCCCceeEEEEcccCEEEE
Confidence            333  334456666666665555554443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.71  E-value=5.6e-16  Score=109.44  Aligned_cols=166  Identities=14%  Similarity=0.101  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCc--ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cc----cc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SL----GV   75 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~----~~   75 (206)
                      ++|+++|.+|+|||||+|++++.......  .+..+.........+.+  ..+.++||||-.+..       ..    ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654222  22333333333444444  578899999943321       11    11


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----cHHHHHHHHHHcCC
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCASKGN  151 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~  151 (206)
                      .....+|++++|+++.. -+.. -...+..+...+....  ..++++|.|+.|.........    ....+..+....+ 
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-  153 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKV--LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-  153 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHh--HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence            22356899999999886 2222 1233344444332111  247899999999765421111    1133444445544 


Q ss_pred             CcEEEee-----ccCCCCHHHHHHHHHHHHhhcCC
Q 028654          152 IPYFETS-----AKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       152 ~~~~~~s-----~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ..++..+     +.++.++++|++.|.+.+.++.+
T Consensus       154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~  188 (196)
T cd01852         154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG  188 (196)
T ss_pred             CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence            3444444     34567899999999999887443

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.71  E-value=4.1e-16  Score=120.11  Aligned_cols=170  Identities=19%  Similarity=0.224  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe---------------------C-CeEEEEEEeeCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G   66 (206)
                      ++|+++|.+++|||||+|+|++........+.++.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            58999999999999999999988765444455554444433221                     1 1236789999999


Q ss_pred             c----cccccccccc---eecCcEEEEEEECCCh-------------hhHHHH-------HHH--------HHHHHHh--
Q 028654           67 Q----ERFQSLGVAF---YRGADCCVLVYDVNVM-------------KSFDNL-------NNW--------REEFLIQ--  109 (206)
Q Consensus        67 ~----~~~~~~~~~~---~~~~d~vi~v~d~~~~-------------~~~~~~-------~~~--------~~~~~~~--  109 (206)
                      .    .....+...+   ++.+|++++|+|+...             +...++       ..|        +..+.+.  
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~  161 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ  161 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            3    2222222233   7889999999999721             111111       010        0001110  


Q ss_pred             ---------------------------cCCC---------------------CCCCCcEEEEeeCCCCCCCCcceecHHH
Q 028654          110 ---------------------------ASPS---------------------DPENFPFVVLGNKTDVDGGNSRVVSEKK  141 (206)
Q Consensus       110 ---------------------------~~~~---------------------~~~~~pviiv~nK~D~~~~~~~~~~~~~  141 (206)
                                                 +...                     ....+|+++|+||.|+....   ...+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~---~~l~~  238 (396)
T PRK09602        162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAE---ENIER  238 (396)
T ss_pred             cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccch---HHHHH
Confidence                                       0000                     01246999999999975321   11222


Q ss_pred             HHHHHHHcCCCcEEEeeccCCCCHHH-HHHHHHHHHhhcCCCCCC
Q 028654          142 AKAWCASKGNIPYFETSAKEGFNVEA-AFECIAKNALKNEPQEED  185 (206)
Q Consensus       142 ~~~~~~~~~~~~~~~~s~~~~~~i~~-l~~~i~~~~~~~~~~~~~  185 (206)
                      +.+   . +...++++||+.+.++++ +.+.+.+.+++.++..++
T Consensus       239 i~~---~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~  279 (396)
T PRK09602        239 LKE---E-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEIL  279 (396)
T ss_pred             HHh---c-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcc
Confidence            222   2 447799999999999999 889999888887766444

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=2.2e-16  Score=108.12  Aligned_cols=164  Identities=18%  Similarity=0.269  Sum_probs=110.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee---cC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GA   81 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~   81 (206)
                      +.++-.|+++|+.+||||+|+-.|..+.+....   ++.........+...  ..+++|.||+.+.+.....+++   .+
T Consensus        35 rs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~a  109 (238)
T KOG0090|consen   35 RSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSA  109 (238)
T ss_pred             hccCCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccc
Confidence            445568999999999999999998877433221   112222333333332  3788999999998887777777   68


Q ss_pred             cEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH----HH----------
Q 028654           82 DCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA----WC----------  146 (206)
Q Consensus        82 d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~----~~----------  146 (206)
                      -+++||+|... .....+...++..+...... .....|++++.||.|+.-+...+...+.++.    ..          
T Consensus       110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~  188 (238)
T KOG0090|consen  110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS  188 (238)
T ss_pred             eeEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            89999999764 44556667777776655432 2236789999999998765444333332221    11          


Q ss_pred             --------------------HHc-CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          147 --------------------ASK-GNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       147 --------------------~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                                          .-. ..+.|.++|++.+ +++++-+||.++
T Consensus       189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                001 2346888999888 999999999875

>PRK12739 elongation factor G; Reviewed

Probab=99.68  E-value=1.9e-15  Score=124.73  Aligned_cols=116  Identities=18%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      ...+|+++|+.++|||||+++|+.....                  .+.....+.+.....+.+.+  .++.++||||+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~   84 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV   84 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence            4679999999999999999999753111                  11233344444444555544  678999999998


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ++...+...+..+|++++|+|+......+.. ..+..+..       .++|+++++||+|+...
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~-------~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK-------YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECCCCCCC
Confidence            8888888889999999999999875333222 22222221       16799999999998753

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=5.2e-16  Score=118.37  Aligned_cols=174  Identities=18%  Similarity=0.083  Sum_probs=114.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-ccc--------cc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQS--------LG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~--------~~   74 (206)
                      .+..++|+++|+||+|||||+|+|...+.. ..+.+++|.+.....++++|  +.+.+.||.|..+ ...        ..
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA  342 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERA  342 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHH
Confidence            356789999999999999999999998876 67788888888888888888  6667789999544 111        11


Q ss_pred             ccceecCcEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCC--CCCCCcEEEEeeCCCCCCCCcceec--HHHHHHHHHH
Q 028654           75 VAFYRGADCCVLVYDVN--VMKSFDNLNNWREEFLIQASPS--DPENFPFVVLGNKTDVDGGNSRVVS--EKKAKAWCAS  148 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~pviiv~nK~D~~~~~~~~~~--~~~~~~~~~~  148 (206)
                      ...+..+|++++|+|+.  .-++...+...+..........  .....|++++.||+|+...-.....  ........ .
T Consensus       343 ~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~-~  421 (531)
T KOG1191|consen  343 RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEG-R  421 (531)
T ss_pred             HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccccc-C
Confidence            23457799999999993  3222223333333322211110  1124589999999998765111110  00111100 0


Q ss_pred             cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          149 KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       149 ~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      .....+.++|+++++|++.|...+.+.+.....
T Consensus       422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  422 SVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             cccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            112345669999999999999999987766554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.68  E-value=1e-15  Score=126.31  Aligned_cols=117  Identities=18%  Similarity=0.083  Sum_probs=81.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      +...+|+++|++++|||||+++|+......                  ......+.+.....+.+.+  ..+.+|||||+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~   85 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGH   85 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCC
Confidence            346799999999999999999997422110                  1122333334344444444  68899999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++......++..+|++++|+|+.+....... .++..+..       .++|+++++||+|+...
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-------~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR-------YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH-------cCCCEEEEEECCCCCCC
Confidence            88877788889999999999999875443332 22222221       16799999999999864

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.9e-16  Score=103.16  Aligned_cols=156  Identities=20%  Similarity=0.327  Sum_probs=109.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .-|++++|-.|+|||||++.|-..+.. .+.||.  ..+...+.+.+  ..++-+|.+|+..-+..+..++..+|++++.
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHcccccc-ccCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            458999999999999999998766533 233332  22223334444  6888899999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH------HHHH----------cCC
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA------WCAS----------KGN  151 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~------~~~~----------~~~  151 (206)
                      +|+.+.+.+.....-+..+.....   ..+.|+++.+||+|.+++.    +.++...      +...          ...
T Consensus        95 vda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~rp  167 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNVRP  167 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCCCe
Confidence            999998877665444444433222   2388999999999998763    2222221      1111          011


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHH
Q 028654          152 IPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ..++.+|...+.+.-+.|.|+.+.
T Consensus       168 ~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  168 LEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEEEEEEccCccceeeeehhhh
Confidence            357888988888887777777654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=2.7e-16  Score=125.19  Aligned_cols=119  Identities=20%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC----C--------------cccccceeeEEEEEEeCCeEEEEEEeeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSN----Q--------------YKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      ....+|+++|++++|||||+++|+..  ....    .              .....+.++......+......+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            34679999999999999999998532  1110    0              00011223333333444445788999999


Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      |+..+.......+..+|++++|+|+++.-. .....++.... .      .+.|+++++||+|+...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~-~------~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR-L------RDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH-h------cCCCEEEEEECccccCC
Confidence            998888777778899999999999986321 11233333221 1      16799999999998753

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.67  E-value=2.7e-16  Score=98.53  Aligned_cols=137  Identities=26%  Similarity=0.344  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc----cccccccccceecCcEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----ERFQSLGVAFYRGADCCV   85 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~vi   85 (206)
                      ||+++|..|+|||||.+.+.+....  +..|....       +..+    -.+||||.    ..+-.........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7899999999999999999887532  23332222       2111    14699993    222222334457799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ++-.++++++.-.     ..+...+      ..|+|-|++|.|++++    ...+..+.|..+.+.-++|.+|+.++.|+
T Consensus        70 ~v~~and~~s~f~-----p~f~~~~------~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv  134 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDIG------VKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV  134 (148)
T ss_pred             eeecccCccccCC-----ccccccc------ccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence            9999998765211     1122211      5579999999999853    45677888888888889999999999999


Q ss_pred             HHHHHHHHH
Q 028654          166 EAAFECIAK  174 (206)
Q Consensus       166 ~~l~~~i~~  174 (206)
                      +++++.+..
T Consensus       135 ~~l~~~L~~  143 (148)
T COG4917         135 EELVDYLAS  143 (148)
T ss_pred             HHHHHHHHh
Confidence            999998865

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=7.9e-16  Score=115.40  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=101.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (206)
                      .+.++++++|+..+|||||+-+|+....                               ..++..+  .++......+..
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerG--vTi~~~~~~fet   82 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERG--VTIDVAHSKFET   82 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcc--eEEEEEEEEeec
Confidence            4568999999999999999999876422                               1122222  333333444444


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      ..+.++++|+||+.+|-..+...+..||+.|+|+|+.+.+   .+... +.-.+.++....  +  -..+|+++||+|.+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--G--i~~lIVavNKMD~v  158 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--G--IKQLIVAVNKMDLV  158 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--C--CceEEEEEEccccc
Confidence            5578999999999999999999999999999999998753   11000 111111222111  1  12489999999998


Q ss_pred             CCCcceecHHHHH----HHHHHcC----CCcEEEeeccCCCCHHH
Q 028654          131 GGNSRVVSEKKAK----AWCASKG----NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       131 ~~~~~~~~~~~~~----~~~~~~~----~~~~~~~s~~~~~~i~~  167 (206)
                      +-  .+..++++.    .+.+..+    +.+|+++|+..|+|+.+
T Consensus       159 ~w--de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         159 SW--DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cc--CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            74  233333332    3333333    36799999999998875

>PRK09866 hypothetical protein; Provisional

Probab=99.66  E-value=1.1e-14  Score=115.65  Aligned_cols=110  Identities=25%  Similarity=0.285  Sum_probs=71.9

Q ss_pred             EEEEeeCCCccc-----cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           58 TLQIWDTAGQER-----FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        58 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ++.|+||||...     +...+...+..+|+++||+|+...-+..+ ......+... .    .+.|+++|+||+|+...
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~----K~~PVILVVNKIDl~dr  304 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-G----QSVPLYVLVNKFDQQDR  304 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-C----CCCCEEEEEEcccCCCc
Confidence            578999999543     23334557899999999999986433332 2223333221 1    12599999999998643


Q ss_pred             CcceecHHHHHHHHH----H--cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          133 NSRVVSEKKAKAWCA----S--KGNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      .  ....+.+..+..    .  .....++++||+.|.|++.+++.|.+.
T Consensus       305 e--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        305 N--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             c--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            1  122344444322    1  124579999999999999999999873

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=1.1e-14  Score=106.82  Aligned_cols=171  Identities=23%  Similarity=0.199  Sum_probs=113.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC----CC---CCcccccceeeEEEEEEe-------CCeEEEEEEeeCCCccccccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK----FS---NQYKATIGADFLTKEVQF-------EDRLFTLQIWDTAGQERFQSL   73 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~----~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~~   73 (206)
                      .+++.++|+..||||||.+++..-.    |.   .+.....+.+..-..+.+       .+..++++++|+||+...-..
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            4899999999999999999987532    22   222233333333333322       345578999999998876655


Q ss_pred             cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----H-
Q 028654           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----S-  148 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~-  148 (206)
                      ......-.|..++|+|+......+.++.++..  ..+      -...++|+||+|..+...+....++.....+    . 
T Consensus        87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig--~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIG--ELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHhhhheeeeeeEEEehhcccccccchhhhhh--hhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            55555667899999999875443433332211  111      2247889999998776555544444332221    1 


Q ss_pred             --cCCCcEEEeeccCC----CCHHHHHHHHHHHHhhcCCCCCCC
Q 028654          149 --KGNIPYFETSAKEG----FNVEAAFECIAKNALKNEPQEEDY  186 (206)
Q Consensus       149 --~~~~~~~~~s~~~~----~~i~~l~~~i~~~~~~~~~~~~~~  186 (206)
                        .++.|++++|++.|    +++.+|.+.|.+++.+....++.+
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gp  202 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGP  202 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCC
Confidence              24589999999999    799999999999998866665544

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.64  E-value=8.1e-15  Score=111.31  Aligned_cols=175  Identities=17%  Similarity=0.176  Sum_probs=122.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   72 (206)
                      ...+|+++-+...|||||+..|+.....              .......+.++-.+...+.-..+.+.++||||+.+|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            3568999999999999999999875321              11122234445455544554558899999999999999


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----  148 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----  148 (206)
                      .....++..|++++++|+.+.-..+. .-.   +.+.+..    +.+.|+|+||+|.+.+....+..+-...|..-    
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQT-rFV---lkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d  155 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQT-RFV---LKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD  155 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCch-hhh---HHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence            99999999999999999987432221 111   1222222    66789999999999886666655555555432    


Q ss_pred             -cCCCcEEEeeccCCC----------CHHHHHHHHHHHHhhcCCCCCCCCCc
Q 028654          149 -KGNIPYFETSAKEGF----------NVEAAFECIAKNALKNEPQEEDYLPD  189 (206)
Q Consensus       149 -~~~~~~~~~s~~~~~----------~i~~l~~~i~~~~~~~~~~~~~~~~~  189 (206)
                       .-..|++..|+.+|.          ++.-||+.|++.++......+.++..
T Consensus       156 eQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~  207 (603)
T COG1217         156 EQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQM  207 (603)
T ss_pred             hhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEE
Confidence             123688999988653          67889999999888766544444443

>PRK00007 elongation factor G; Reviewed

Probab=99.63  E-value=3.4e-15  Score=123.18  Aligned_cols=117  Identities=18%  Similarity=0.116  Sum_probs=80.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      +...+|+++|++++|||||+++|+.....                  .+.....+.+.....+.+.+  ..+.++||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            44679999999999999999999742110                  01233334444344444444  68889999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++.......+..+|++++|+|+...-..+... .+..+...       ++|+++++||+|+...
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~~-------~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADKY-------KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHHc-------CCCEEEEEECCCCCCC
Confidence            888777788889999999999988653333322 22222221       6799999999999864

>PRK12740 elongation factor G; Reviewed

Probab=99.62  E-value=1.3e-14  Score=119.88  Aligned_cols=109  Identities=20%  Similarity=0.220  Sum_probs=74.8

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccc
Q 028654           14 LGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV   75 (206)
Q Consensus        14 iG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   75 (206)
                      +|+.++|||||+++|+.....                  .+...+.+.......+.+.+  +.+.+|||||+.++...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            599999999999999643221                  01122233333334444444  7889999999988877788


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++..+|++++++|++..........| ..+..       .+.|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK-------YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH-------cCCCEEEEEECCCCCCC
Confidence            888999999999999876554433222 22221       16799999999998653

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.61  E-value=5.7e-15  Score=122.29  Aligned_cols=119  Identities=20%  Similarity=0.189  Sum_probs=80.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC---------------CCCC-C--cccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR---------------KFSN-Q--YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~---------------~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ....+|+++|+.++|||||+++|+..               ++.. .  +..+...........+.+..+.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45689999999999999999999753               1111 0  1112222222222335566789999999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++......++..+|++++|+|+...-..+....| .....       .+.|+++++||+|....
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~~-------~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQALK-------ENVKPVLFINKVDRLIN  153 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHHH-------cCCCEEEEEEChhcccc
Confidence            98888888899999999999999863222221112 11111       16688999999998754

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.60  E-value=2.2e-15  Score=107.22  Aligned_cols=173  Identities=17%  Similarity=0.197  Sum_probs=100.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-------cccccceeeEEEEEEe-------------------------
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-------YKATIGADFLTKEVQF-------------------------   52 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~-------------------------   52 (206)
                      .+.+.-|+|+|..|||||||+.+|........       ..|....-.+...+.+                         
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            34577899999999999999999976432211       1111100000111100                         


Q ss_pred             ----------------CCeEEEEEEeeCCCcccccc------ccccceec--CcEEEEEEECCChh-hHHHHHHHHHHHH
Q 028654           53 ----------------EDRLFTLQIWDTAGQERFQS------LGVAFYRG--ADCCVLVYDVNVMK-SFDNLNNWREEFL  107 (206)
Q Consensus        53 ----------------~~~~~~~~i~D~~G~~~~~~------~~~~~~~~--~d~vi~v~d~~~~~-~~~~~~~~~~~~~  107 (206)
                                      ....+...++||||+-+...      .....++.  .-+++|++|..... ....+..++..-.
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                            11134678999999654221      12222222  34778888864322 2222333333332


Q ss_pred             HhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-----------------------cCCCcEEEeeccCCCC
Q 028654          108 IQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------------------KGNIPYFETSAKEGFN  164 (206)
Q Consensus       108 ~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~s~~~~~~  164 (206)
                      .+..    ...|+|++.||.|+.+......+..+.+.|-..                       +..+..+-+|+.+|.|
T Consensus       176 ilyk----tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G  251 (366)
T KOG1532|consen  176 ILYK----TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG  251 (366)
T ss_pred             HHHh----ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence            2222    278999999999998875544444443333221                       2346789999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 028654          165 VEAAFECIAKNALKNEP  181 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~  181 (206)
                      ++++|..+-+.+-+...
T Consensus       252 ~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  252 FDDFFTAVDESVDEYEE  268 (366)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998887655433

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.59  E-value=3.2e-14  Score=119.93  Aligned_cols=147  Identities=24%  Similarity=0.236  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe----------------EEEEEEeeCCCccccccccccceecCc
Q 028654           19 VGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------------LFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus        19 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~D~~G~~~~~~~~~~~~~~~d   82 (206)
                      ++||||+.++.+-........+.|..+....+..+..                ...+.||||||++.+..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            3599999999988776665666666655555544311                013799999999999887777788899


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc--------------eecHHHHH--
Q 028654           83 CCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--------------VVSEKKAK--  143 (206)
Q Consensus        83 ~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~--------------~~~~~~~~--  143 (206)
                      ++++|+|+++   +.+.+.+.    .+.. .      ++|+++|+||+|+.+....              +...+++.  
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~-~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~  620 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ-Y------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIK  620 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH-c------CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHH
Confidence            9999999986   33333322    1211 1      6799999999999643110              00111111  


Q ss_pred             --H----HHH-------------HcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          144 --A----WCA-------------SKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       144 --~----~~~-------------~~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                        .    +..             ..+.++++++||++|+|+++|+.+|....
T Consensus       621 l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        621 LYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence              0    111             12357899999999999999999886544

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.59  E-value=3.1e-13  Score=95.31  Aligned_cols=175  Identities=17%  Similarity=0.167  Sum_probs=121.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------cccccccceec
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   80 (206)
                      -.+++++|.|++|||||+..+..-.........++.+.....+.+++  ..++++|.||.-+       .........+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence            36899999999999999999987665555566667778788888888  4667889999322       23345566788


Q ss_pred             CcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCC-----------------------------------------
Q 028654           81 ADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENF-----------------------------------------  118 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------------------------------  118 (206)
                      +|.+++|.|++..+.... +.+-++.+-... +...|++                                         
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~vGiRL-Nk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAVGIRL-NKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHhceec-cCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            999999999997554432 222222211111 1111122                                         


Q ss_pred             ---------------------cEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH-
Q 028654          119 ---------------------PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-  176 (206)
Q Consensus       119 ---------------------pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~-  176 (206)
                                           +.+.|-||+|.       ++.|++..+++.++ .  +.+|+....|++.+++.|++.+ 
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-------vs~eevdrlAr~Pn-s--vViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-------VSIEEVDRLARQPN-S--VVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccce-------ecHHHHHHHhcCCC-c--EEEEeccccCHHHHHHHHHHHhc
Confidence                                 77888899975       56788888888876 3  5568888889999999999966 


Q ss_pred             ----hhcCCCCCCCCCccccCCC
Q 028654          177 ----LKNEPQEEDYLPDTIDVGG  195 (206)
Q Consensus       177 ----~~~~~~~~~~~~~~~~~~~  195 (206)
                          +..++..++.+.+.+.+++
T Consensus       289 L~rvYtKk~g~~Pdfdd~~vlr~  311 (364)
T KOG1486|consen  289 LVRVYTKKKGQRPDFDDPLVLRK  311 (364)
T ss_pred             eEEEEecCCCCCCCCCCceEEeC
Confidence                3444555666666665553

>PTZ00258 GTP-binding protein; Provisional

Probab=99.59  E-value=4.9e-14  Score=107.67  Aligned_cols=87  Identities=23%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER   69 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~   69 (206)
                      +...++|+++|.||+|||||+|+|.+........|.+|.+.....+.+.+.               ..++.++|+||-..
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            455679999999999999999999988766666677776666666555432               23589999999321


Q ss_pred             -------cccccccceecCcEEEEEEECC
Q 028654           70 -------FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 -------~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                             ........++.+|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                   1122233467899999999984

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.58  E-value=2.2e-14  Score=119.08  Aligned_cols=119  Identities=17%  Similarity=0.122  Sum_probs=78.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC----------------CcccccceeeEEEEE--EeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKATIGADFLTKEV--QFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~G~   67 (206)
                      ....+|+++|+.++|||||+.+|+......                +.....+.......+  .+.+....+.|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            456789999999999999999997532110                001111111111122  23445678999999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++.......+..+|++++|+|+...-......-| ......       +.|.++++||+|+...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~-------~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE-------RVKPVLFINKVDRLIK  154 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc-------CCCeEEEEECchhhcc
Confidence            99888888889999999999998864332222222 222111       5578999999998743

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.57  E-value=3.1e-14  Score=101.58  Aligned_cols=166  Identities=16%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCc--ccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-------ccccc----
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGV----   75 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~----   75 (206)
                      ++|+++|.+|+||||++|.+++.......  ....+.........+++  ..+.++||||-.+.       .....    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999988765332  22233444444446666  56789999992111       11111    


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee-----cHHHHHHHHHHcC
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV-----SEKKAKAWCASKG  150 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-----~~~~~~~~~~~~~  150 (206)
                      ......|++++|+.... -+... ...+..+...+...-  ...++||.|..|.........     ..+.+..+....+
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence            12346899999999882 22222 233344444443221  235899999888765432111     1123455666666


Q ss_pred             CCcEEEeecc------CCCCHHHHHHHHHHHHhhcCC
Q 028654          151 NIPYFETSAK------EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       151 ~~~~~~~s~~------~~~~i~~l~~~i~~~~~~~~~  181 (206)
                       ..++..+..      ....+.+|++.|-+.+.++..
T Consensus       155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence             456666655      335688899988888777653

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.57  E-value=1.3e-13  Score=100.14  Aligned_cols=124  Identities=16%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc--c-c-------
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--S-L-------   73 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~-------   73 (206)
                      ...+++|+|+|.+|+|||||+|++++..... ......+..........++  ..+.+|||||-.+..  . .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            4567999999999999999999999876532 2222223333333333444  578999999944331  0 0       


Q ss_pred             ccccee--cCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           74 GVAFYR--GADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        74 ~~~~~~--~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      ...+++  ..|++++|..++... ...+ ...+..+...+...-  ..++++|.||+|...++
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSI--WRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhh--HhCEEEEEeCCccCCCC
Confidence            112232  578888887666422 2221 233333433332111  24699999999987543

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK13768 GTPase; Provisional

Probab=99.56  E-value=1.9e-14  Score=105.11  Aligned_cols=115  Identities=17%  Similarity=0.102  Sum_probs=70.5

Q ss_pred             EEEEeeCCCccccc---cccccc---eec--CcEEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           58 TLQIWDTAGQERFQ---SLGVAF---YRG--ADCCVLVYDVNVMKSFDNL--NNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        58 ~~~i~D~~G~~~~~---~~~~~~---~~~--~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      .+.+||+||+.+..   .....+   +..  ++++++++|+.........  ..|+...... .    .+.|+++|+||+
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~----~~~~~i~v~nK~  172 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-R----LGLPQIPVLNKA  172 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-H----cCCCEEEEEEhH
Confidence            57899999976532   222222   222  8999999999764433332  2222221111 1    177999999999


Q ss_pred             CCCCCCcceecHHHHH------------------------HHHHHc-CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          128 DVDGGNSRVVSEKKAK------------------------AWCASK-GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       128 D~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      |+............+.                        +..... ...+++++|++++.|+++++++|.+.+.
T Consensus       173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            9976532211111111                        111122 2358899999999999999999988764

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=4.4e-14  Score=106.89  Aligned_cols=180  Identities=21%  Similarity=0.147  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      -|+..|+---|||||+.++.+..-.   .....+++.+.........+  ..+.|+|.||++++-..+...+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            4677899999999999999876543   34445555555555444444  488899999999999989888899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHH--cCCCcEEEeeccCCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~  163 (206)
                      |+++++.-..+..+..  .+...+      +++ .++|+||+|+.+..   ...+..+++...  ..+.+++.+|+.+|+
T Consensus        80 vV~~deGl~~qtgEhL--~iLdll------gi~~giivltk~D~~d~~---r~e~~i~~Il~~l~l~~~~i~~~s~~~g~  148 (447)
T COG3276          80 VVAADEGLMAQTGEHL--LILDLL------GIKNGIIVLTKADRVDEA---RIEQKIKQILADLSLANAKIFKTSAKTGR  148 (447)
T ss_pred             EEeCccCcchhhHHHH--HHHHhc------CCCceEEEEeccccccHH---HHHHHHHHHHhhcccccccccccccccCC
Confidence            9999753332222211  122222      333 59999999998643   222222332222  345788999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCC
Q 028654          164 NVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGC  204 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  204 (206)
                      |+++|.+.|.+..-  ........|-.+.+...+..|+.||
T Consensus       149 GI~~Lk~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGT  187 (447)
T COG3276         149 GIEELKNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGT  187 (447)
T ss_pred             CHHHHHHHHHHhhh--hhhhccCCceEEEEeeEEEeccccE
Confidence            99999999999764  3334445677777888888888886

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.54  E-value=2.1e-13  Score=100.44  Aligned_cols=149  Identities=20%  Similarity=0.147  Sum_probs=100.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC---------------------------------CCCcccccceeeEEEEEEe
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------------------------SNQYKATIGADFLTKEVQF   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   52 (206)
                      ...++.+-+|...=||||||-+|+...-                                 ..+...+  .++......+
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQG--ITIDVAYRyF   81 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQG--ITIDVAYRYF   81 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcC--ceEEEEeeec
Confidence            4568999999999999999999875321                                 0111222  2333333333


Q ss_pred             CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCC
Q 028654           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG  131 (206)
Q Consensus        53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~  131 (206)
                      .-...+|.+-||||+++|...+..-...||++|+++|+...-.-+  .+-...+...+      ++ .+++.+||+||.+
T Consensus        82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~Q--TrRHs~I~sLL------GIrhvvvAVNKmDLvd  153 (431)
T COG2895          82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQ--TRRHSFIASLL------GIRHVVVAVNKMDLVD  153 (431)
T ss_pred             ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHH--hHHHHHHHHHh------CCcEEEEEEeeecccc
Confidence            344468899999999999999999999999999999997432111  11112222222      33 4889999999998


Q ss_pred             CCcceecHH----HHHHHHHHcC--CCcEEEeeccCCCCHH
Q 028654          132 GNSRVVSEK----KAKAWCASKG--NIPYFETSAKEGFNVE  166 (206)
Q Consensus       132 ~~~~~~~~~----~~~~~~~~~~--~~~~~~~s~~~~~~i~  166 (206)
                      ..  +...+    +...|+...+  ...++++||..|+|+-
T Consensus       154 y~--e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         154 YS--EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             cC--HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            73  33333    3344666654  3579999999999875

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=4.4e-13  Score=98.96  Aligned_cols=125  Identities=16%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-------ccc
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGV   75 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~   75 (206)
                      .....++|+++|.+|+||||++|++++..... ......+...........+  ..+.++||||..+...       ...
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence            34568899999999999999999999876431 1111222222222223333  6789999999443211       111


Q ss_pred             cce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           76 AFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        76 ~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++  ...|+++||..++.......-...+..+...+...-  ..+++++.|+.|..++
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI--WRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh--hccEEEEEECCccCCC
Confidence            111  258999999665432111111233344444432211  3469999999997644

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.53  E-value=7.8e-15  Score=105.90  Aligned_cols=115  Identities=17%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             EEEEeeCCCccccccccccce--------ecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        58 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      .+.++|||||.++...+...-        ...-++++++|..-..+ ...+..++..+..+.+.    +.|.+.|+||+|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D  167 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID  167 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence            578999999877655443322        34558899999864322 22234434443333322    789999999999


Q ss_pred             CCCCCc--c------------------eecHHHHHHHHHHcCCC-cEEEeeccCCCCHHHHHHHHHHHH
Q 028654          129 VDGGNS--R------------------VVSEKKAKAWCASKGNI-PYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       129 ~~~~~~--~------------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      +.....  .                  ....+.+.++....+.. .++++|+.+++++++++..|-+++
T Consensus       168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            986210  0                  00011111122223445 899999999999999999887754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.52  E-value=5.8e-14  Score=118.01  Aligned_cols=118  Identities=17%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCcccccceeeEEEEEEeC--------------C
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFE--------------D   54 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~   54 (206)
                      .+...+|+|+|+.++|||||+++|+.....                .+.....+.......+.+.              .
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            445789999999999999999999754321                1111122222212222221              2


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      ....+.++||||+.+|.......+..+|++|+|+|+.+.-......-| ..+...       ++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~~~-------~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQALGE-------RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHHHC-------CCCEEEEEECCccc
Confidence            356789999999999998888899999999999999875433332222 222211       77999999999987

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.51  E-value=3.9e-13  Score=100.99  Aligned_cols=109  Identities=13%  Similarity=0.149  Sum_probs=70.7

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      +.+.|+||+|..+....   ....+|.++++.+....+.+..+.   ..+.         ...-++|+||+|+.......
T Consensus       149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~---------E~aDIiVVNKaDl~~~~~a~  213 (332)
T PRK09435        149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIM---------ELADLIVINKADGDNKTAAR  213 (332)
T ss_pred             CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhh---------hhhheEEeehhcccchhHHH
Confidence            57899999996533222   456799999998755444443322   1111         22348999999988643222


Q ss_pred             ecHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          137 VSEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       137 ~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ....++.......      ...+++.+|++++.|++++++.|.+.+....
T Consensus       214 ~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~  263 (332)
T PRK09435        214 RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALT  263 (332)
T ss_pred             HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            3333444333221      1258999999999999999999999876433

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.50  E-value=9.4e-13  Score=99.63  Aligned_cols=83  Identities=24%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeE---------------EEEEEeeCCCccc----
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER----   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~----   69 (206)
                      ++|+++|.|++|||||+|+|++........|.+|.+.....+.+.+..               ..+.++|+||-..    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999987555555666666665555554421               2589999999322    


Q ss_pred             ---cccccccceecCcEEEEEEECC
Q 028654           70 ---FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 ---~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                         ........++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1112233467899999999984

>TIGR00101 ureG urease accessory protein UreG

Probab=99.50  E-value=1e-12  Score=92.61  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      ....++++.|..-..... .  .-+|.++.|+|+.+.+....  .+..++          ...-++++||+|+.+.  ..
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~--~~  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPM--VG  154 (199)
T ss_pred             CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhcccc--cc
Confidence            456678888832111111 1  12688999999986554221  111111          1123899999999853  11


Q ss_pred             ecHHHHHHHHHH-cCCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          137 VSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ...+...+..+. ....+++++|+++|+|+++++++|.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            223333333333 34589999999999999999999998664

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01882 BMS1 Bms1

Probab=99.49  E-value=8.4e-13  Score=95.01  Aligned_cols=142  Identities=18%  Similarity=0.181  Sum_probs=83.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ..+..|+++|++|+|||||++.+.+..-........+ .+.   + ......++.++||||..   ......++.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~---i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT---V-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE---E-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            3467799999999999999999986522111111111 111   1 11234578899999864   22334467899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEeeCCCCCCCCcc-eecHHHHHH-HHH-HcCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNSR-VVSEKKAKA-WCA-SKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~s~~~  161 (206)
                      +++|++....... ..++..+...       +.|. ++|+||+|+.+.... ....+.+.. +.. ...+.+++++||++
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~-------g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~  180 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH-------GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV  180 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc-------CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence            9999986433222 2222222211       4574 559999999753211 111223332 222 23458999999987


Q ss_pred             CC
Q 028654          162 GF  163 (206)
Q Consensus       162 ~~  163 (206)
                      .-
T Consensus       181 ~~  182 (225)
T cd01882         181 HG  182 (225)
T ss_pred             CC
Confidence            63

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.49  E-value=2.8e-12  Score=100.03  Aligned_cols=164  Identities=20%  Similarity=0.304  Sum_probs=121.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      .+.+++.|+|+.++|||.|++.+.++.+......+....+....+...+....+.+.|.+-. ......... ..+|+++
T Consensus       423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~  500 (625)
T KOG1707|consen  423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC  500 (625)
T ss_pred             ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence            45789999999999999999999999988766677777777777777777777777777654 222222222 6799999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ++||.+++.++......+......      ...|+++|++|+|+.+...+.....  .+++...+..+.+.+|.+.... 
T Consensus       501 ~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  501 LVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             EecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhhhccCCCh--HHHHHhcCCCCCeeeccCCCCC-
Confidence            999999999998876554433222      2789999999999987633333222  7788888766677788875434 


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      .++|..|+.++.-..
T Consensus       572 ~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 NELFIKLATMAQYPH  586 (625)
T ss_pred             chHHHHHHHhhhCCC
Confidence            899999998776544

>PTZ00416 elongation factor 2; Provisional

Probab=99.49  E-value=1.5e-13  Score=115.43  Aligned_cols=117  Identities=18%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCcccccceeeEEEEEEeC--------CeEEEEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFE--------DRLFTLQI   61 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i   61 (206)
                      +...+|+++|+.++|||||+++|+.....                .+...+.+.......+.+.        +....+.|
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            44679999999999999999999863221                0111111111111222232        22567899


Q ss_pred             eeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        62 ~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      +||||+.++.......++.+|++|+|+|+.+.-.... ...+..+...       +.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~-------~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQE-------RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHc-------CCCEEEEEEChhhh
Confidence            9999999998888888999999999999987433222 2222323221       67999999999987

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.48  E-value=8e-13  Score=97.65  Aligned_cols=140  Identities=16%  Similarity=0.211  Sum_probs=75.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------ccccceeeEEEEEEeCCeEEEEEEeeCCCcc--------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------   68 (206)
                      -.++|+|+|.+|+|||||+|.|++.......          ..+.........+.-++..+.+.++||||-.        
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            4689999999999999999999987654221          1222233333444556788899999999911        


Q ss_pred             ----------cccccc---------ccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           69 ----------RFQSLG---------VAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        69 ----------~~~~~~---------~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                                ++....         ...=...|+++|+++++... ...++ .++..+..        ..++|.|+.|+|
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls~--------~vNvIPvIaKaD  153 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLSK--------RVNVIPVIAKAD  153 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHTT--------TSEEEEEESTGG
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhcc--------cccEEeEEeccc
Confidence                      010000         00113478999999987532 22222 33344432        567999999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654          129 VDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .....+.....+.+..-....+ +.++.
T Consensus       154 ~lt~~el~~~k~~i~~~l~~~~-I~~f~  180 (281)
T PF00735_consen  154 TLTPEELQAFKQRIREDLEENN-IKIFD  180 (281)
T ss_dssp             GS-HHHHHHHHHHHHHHHHHTT---S--
T ss_pred             ccCHHHHHHHHHHHHHHHHHcC-ceeec
Confidence            8654222222333333333333 55454

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.45  E-value=1.7e-12  Score=89.47  Aligned_cols=63  Identities=17%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             EEEEeeCCCcc----ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           58 TLQIWDTAGQE----RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        58 ~~~i~D~~G~~----~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      .+.|+||||-.    .....+..+++.+|++++|.+++..........+.......       ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-------~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-------KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-------CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-------CCeEEEEEcCC
Confidence            37899999943    23355667789999999999999855544444444433221       33589999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.45  E-value=4.6e-13  Score=93.18  Aligned_cols=152  Identities=20%  Similarity=0.272  Sum_probs=102.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-----ccccceecC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGA   81 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~   81 (206)
                      ..||+++|.+|||||++=..++.... .+...++.+.++....+.+-| +..+.+||++|++.+-+     .....+.+.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            35899999999999998666553322 234455666677666665554 24788999999874432     344567889


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH---HcCCCcEEEee
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---SKGNIPYFETS  158 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s  158 (206)
                      +++|++||++..+-..++..+...+.......  +...+++.+.|.|+...+.+....++......   ......++++|
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999998776666666666555444433  24568999999999876555544444333222   22336778888


Q ss_pred             ccCC
Q 028654          159 AKEG  162 (206)
Q Consensus       159 ~~~~  162 (206)
                      .++.
T Consensus       161 iwDe  164 (295)
T KOG3886|consen  161 IWDE  164 (295)
T ss_pred             hhhH
Confidence            7654

>cd00066 G-alpha G protein alpha subunit

Probab=99.45  E-value=6.6e-12  Score=94.75  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=83.1

Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      .+.+.+||++|+...+..|..++.+++++|+|+|.++..       ....+..-+..+...+......+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            367889999999999999999999999999999998731       1122333333344444443335789999999999


Q ss_pred             CCCC--------------CcceecHHHHHHHHHH---------cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          129 VDGG--------------NSRVVSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       129 ~~~~--------------~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +...              .......+....+...         ...+.+..++|.+..+++.+|+.+.+.++...
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            5321              0102233333332221         11244566888888899999999888877643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.44  E-value=3.9e-12  Score=92.97  Aligned_cols=175  Identities=21%  Similarity=0.300  Sum_probs=120.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEe--CCeEEEEEEeeCCCccccccccccceec---Cc-
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF--EDRLFTLQIWDTAGQERFQSLGVAFYRG---AD-   82 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~---~d-   82 (206)
                      -+|+|+|..++|||||+.+|.+..   ...+..+..|....+.-  .+...++.+|-..|+.-...+....+..   ++ 
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            478999999999999999997765   44566666665554432  3345677888888876666666555543   23 


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCC---------------------------------------------
Q 028654           83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPE---------------------------------------------  116 (206)
Q Consensus        83 ~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  116 (206)
                      .+|++.|.+++ .-++.++.|...+..+......+                                             
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            77889999987 34555677766644443322211                                             


Q ss_pred             ------------CCcEEEEeeCCCCCC-----CCcce----ecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          117 ------------NFPFVVLGNKTDVDG-----GNSRV----VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       117 ------------~~pviiv~nK~D~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                                  ++|+++|+||+|...     .+.+.    .....++.|+.+++ ...|.+|+++..|++-+...|.++
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHH
Confidence                        339999999999732     11122    23334556777777 788999999999999999999998


Q ss_pred             HhhcCCCCCCCC
Q 028654          176 ALKNEPQEEDYL  187 (206)
Q Consensus       176 ~~~~~~~~~~~~  187 (206)
                      .+--+=.-+.++
T Consensus       289 ~yG~~fttpAlV  300 (473)
T KOG3905|consen  289 SYGFPFTTPALV  300 (473)
T ss_pred             hcCcccCCcceE
Confidence            876555544443

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.1e-12  Score=104.82  Aligned_cols=162  Identities=19%  Similarity=0.156  Sum_probs=104.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------------CeEEEEEEeeCCCccccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~~~   71 (206)
                      ..-|||+|+..+|||-|+..+.+-.+......+.+..+....+...                -..--+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            4568999999999999999998766554444443333222222111                011246789999999999


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce---e-----------
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV---V-----------  137 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~---~-----------  137 (206)
                      .+.......||.+|+|+|+.+.-..+.+..+ ..+. .      .+.|+||.+||+|........   -           
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqtiESi-~lLR-~------rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTIESI-NLLR-M------RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchhHHH-HHHH-h------cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            9998888999999999999864333333221 2221 1      178999999999975432100   0           


Q ss_pred             cHH--------HHHHHHHHc-------------CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          138 SEK--------KAKAWCASK-------------GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       138 ~~~--------~~~~~~~~~-------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ..+        .+.+|+.+.             ..+.++++||..|+|+-+|+.+|++...
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence            000        111222211             1136899999999999999999988553

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.43  E-value=9.1e-12  Score=94.59  Aligned_cols=174  Identities=16%  Similarity=0.164  Sum_probs=99.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC----CCC------------CCcccc---cceeeEE---EEEEe---CCeEEEEEEe
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR----KFS------------NQYKAT---IGADFLT---KEVQF---EDRLFTLQIW   62 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~~---~~~~~~~~i~   62 (206)
                      .+.|+|+|+.++|||||+|+|.+.    ...            ++..++   +|++...   .-+.+   ++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            578999999999999999999987    222            112222   2222222   12222   3445688899


Q ss_pred             eCCCccccc-------cc----------------------ccccee-cCcEEEEEE-ECCC----hhhHHH-HHHHHHHH
Q 028654           63 DTAGQERFQ-------SL----------------------GVAFYR-GADCCVLVY-DVNV----MKSFDN-LNNWREEF  106 (206)
Q Consensus        63 D~~G~~~~~-------~~----------------------~~~~~~-~~d~vi~v~-d~~~----~~~~~~-~~~~~~~~  106 (206)
                      ||+|-..-.       ..                      +...+. ++++.++|. |.+-    ++.+.. -.++...+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            999921100       01                      223345 789888888 7741    122222 24566666


Q ss_pred             HHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC--CCHHHHHHHHHHHHhhcCCC-C
Q 028654          107 LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--FNVEAAFECIAKNALKNEPQ-E  183 (206)
Q Consensus       107 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~i~~l~~~i~~~~~~~~~~-~  183 (206)
                      ...       ++|+++|+|+.|-...    ...+....+...++ .+++.+|+.+-  +++..++..++   ++-+-. =
T Consensus       177 k~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL---~EFPv~Ei  241 (492)
T TIGR02836       177 KEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVL---YEFPILEI  241 (492)
T ss_pred             Hhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHH---hcCCceEE
Confidence            543       8899999999994322    23334445545555 78888887643  34555444444   333322 2


Q ss_pred             CCCCCccccCCCC
Q 028654          184 EDYLPDTIDVGGG  196 (206)
Q Consensus       184 ~~~~~~~~~~~~~  196 (206)
                      +-.+|.|+..=..
T Consensus       242 ~~~~P~Wve~L~~  254 (492)
T TIGR02836       242 NIDLPSWVEVLDE  254 (492)
T ss_pred             EeeCchHHHhcCC
Confidence            3336666655444

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1.3e-12  Score=101.95  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=100.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCCe
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFEDR   55 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (206)
                      ..+.++++|+..+|||||+.+++....                               ..++..  +.+.......++..
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERer--GvTm~v~~~~fes~  253 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERER--GVTMDVKTTWFESK  253 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhc--ceeEEeeeEEEecC
Confidence            467899999999999999999865311                               112222  23333444455566


Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFD---NLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ...++++|+||+..|-..+...+..+|++++|+|++-.+   .|+   ...+. ..+.+.+.     -..++|++||+|+
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEh-a~llr~Lg-----i~qlivaiNKmD~  327 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREH-ALLLRSLG-----ISQLIVAINKMDL  327 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHH-HHHHHHcC-----cceEEEEeecccc
Confidence            678899999999999999999999999999999997421   111   11111 11222222     2248999999999


Q ss_pred             CCCC--cceecHHHHHHHH-HHcC----CCcEEEeeccCCCCHHHH
Q 028654          130 DGGN--SRVVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       130 ~~~~--~~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~~l  168 (206)
                      ++-.  ..++....+..|. ...+    ...|+++|+..|+|+-..
T Consensus       328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            8641  1122333344454 3333    358999999999987543

>cd01900 YchF YchF subfamily

Probab=99.43  E-value=6.5e-13  Score=97.40  Aligned_cols=81  Identities=20%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc------
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER------   69 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~------   69 (206)
                      |+++|.|++|||||+|+|++........+.+|.+.....+.+.+.               ...+.++|+||-..      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            579999999999999999998876655677776666666655443               23589999999322      


Q ss_pred             -cccccccceecCcEEEEEEECC
Q 028654           70 -FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 -~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                       ........++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1112233457799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.43  E-value=1.2e-11  Score=96.93  Aligned_cols=178  Identities=20%  Similarity=0.282  Sum_probs=117.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC--CeEEEEEEeeCCCccccccccccceecC----
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGA----   81 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~----   81 (206)
                      .-.|+|+|..++|||||+.+|.+..   .+.++.+.+|....+.-+  ....++.+|-+.|...+..+....+...    
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            4689999999999999999986543   455677777766554322  2335689999988777777666655432    


Q ss_pred             cEEEEEEECCChhhH-HHHHHHHHHHHHhcCCC-----------------------------------------------
Q 028654           82 DCCVLVYDVNVMKSF-DNLNNWREEFLIQASPS-----------------------------------------------  113 (206)
Q Consensus        82 d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~-----------------------------------------------  113 (206)
                      -++++|+|.+.+-.+ +.+..|+..+..+....                                               
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            378999999986443 22333333311111000                                               


Q ss_pred             -----------CCCCCcEEEEeeCCCCCCCCc---------ceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654          114 -----------DPENFPFVVLGNKTDVDGGNS---------RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA  173 (206)
Q Consensus       114 -----------~~~~~pviiv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~  173 (206)
                                 ...++|++||++|+|....-.         .......++.++..++ ...+.+|.++..+++-|+..|.
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHH
Confidence                       001359999999999643210         1233344566777777 7788899999999999999999


Q ss_pred             HHHhhcCCCCCCCCCc
Q 028654          174 KNALKNEPQEEDYLPD  189 (206)
Q Consensus       174 ~~~~~~~~~~~~~~~~  189 (206)
                      +.+...+-.....+-+
T Consensus       261 h~l~~~~f~~~~~vv~  276 (472)
T PF05783_consen  261 HRLYGFPFKTPAQVVE  276 (472)
T ss_pred             HHhccCCCCCCceeec
Confidence            9988766654444433

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.42  E-value=1.5e-12  Score=98.54  Aligned_cols=164  Identities=14%  Similarity=0.148  Sum_probs=79.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccc---eeeEEEEEEeCCeEEEEEEeeCCCcccccccccc-----c
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----F   77 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~   77 (206)
                      ..+++|+|+|.+|+|||||||+|.+-...+.....+|   ++.....+.. ...-++.+||.||.....-....     -
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4578999999999999999999976433211111111   1111122221 22236889999994322222222     2


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC--CC-------CCcceecHHHHHHHHHH
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV--DG-------GNSRVVSEKKAKAWCAS  148 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~--~~-------~~~~~~~~~~~~~~~~~  148 (206)
                      +...|.+|++.+-.-.+.-   ..+...+..+       ++|+.+|-||+|.  ..       .-.+....+++++.+..
T Consensus       112 ~~~yD~fiii~s~rf~~nd---v~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~  181 (376)
T PF05049_consen  112 FYRYDFFIIISSERFTEND---VQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE  181 (376)
T ss_dssp             GGG-SEEEEEESSS--HHH---HHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred             ccccCEEEEEeCCCCchhh---HHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence            4567888887764422211   2233334333       7799999999995  10       00111222233332221


Q ss_pred             ------cCCCcEEEeeccCCC--CHHHHHHHHHHHHhhcC
Q 028654          149 ------KGNIPYFETSAKEGF--NVEAAFECIAKNALKNE  180 (206)
Q Consensus       149 ------~~~~~~~~~s~~~~~--~i~~l~~~i~~~~~~~~  180 (206)
                            ....++|-+|+.+-.  ++..|.+.+.+-++..+
T Consensus       182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence                  123578889988754  67788888887776543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=4.2e-12  Score=91.59  Aligned_cols=182  Identities=18%  Similarity=0.161  Sum_probs=113.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC----------CCC----CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNR----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   70 (206)
                      ..+.++|..+|+..-|||||..++..-          .|.    .......+.++....+.+.-....+..+|+||+.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            456789999999999999999887541          111    112233455666667777666677788999999999


Q ss_pred             ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCccee-cHHHHHHHHHH
Q 028654           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVV-SEKKAKAWCAS  148 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~-~~~~~~~~~~~  148 (206)
                      -..+..-....|+.|+|+.+++..-.+.....  .+.++.      +.| +++++||+|+.++..... -..++..+...
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarqv------Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~  160 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQV------GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE  160 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhc------CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence            99999988999999999999983322221111  111111      555 789999999997433222 22344555555


Q ss_pred             cC----CCcEEEeeccC---C-CCHHHHHHHHHHHHhhcCCCCCCCCCccccCC
Q 028654          149 KG----NIPYFETSAKE---G-FNVEAAFECIAKNALKNEPQEEDYLPDTIDVG  194 (206)
Q Consensus       149 ~~----~~~~~~~s~~~---~-~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  194 (206)
                      ++    ..|++.-|+..   + ....+-...|.+++-+..+.++...-..+..+
T Consensus       161 y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflmp  214 (394)
T COG0050         161 YGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMP  214 (394)
T ss_pred             cCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCccccccccc
Confidence            43    46777777653   1 12333444445555555555444444444443

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.40  E-value=2.2e-12  Score=87.98  Aligned_cols=152  Identities=19%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEE---------------EEEEe--------------------
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLT---------------KEVQF--------------------   52 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~--------------------   52 (206)
                      .++|.|.|++|||||+|+.+++..-.........+.+.+.               ..+..                    
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            3899999999999999999977532111000001111110               00000                    


Q ss_pred             CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ....+.+.|++..|  ..- ..-++.-..+.-|+|+|++..+....  +-...+          -..=++|+||.|+.+.
T Consensus        93 ~~~~~Dll~iEs~G--NL~-~~~sp~L~d~~~v~VidvteGe~~P~--K~gP~i----------~~aDllVInK~DLa~~  157 (202)
T COG0378          93 DFPDLDLLFIESVG--NLV-CPFSPDLGDHLRVVVIDVTEGEDIPR--KGGPGI----------FKADLLVINKTDLAPY  157 (202)
T ss_pred             cCCcCCEEEEecCc--cee-cccCcchhhceEEEEEECCCCCCCcc--cCCCce----------eEeeEEEEehHHhHHH
Confidence            00114566667766  111 11111112347899999986543210  000000          1134899999999877


Q ss_pred             CcceecHHHHHHHHHHc-CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          133 NSRVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       133 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                        ...+.+...+-++.. +..+++++|+++|+|++++++|+...+
T Consensus       158 --v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         158 --VGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             --hCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence              334445555554443 468999999999999999999998754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.40  E-value=1.2e-11  Score=88.11  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC------------Cccccc--ceeeEEEEEEe------------------CC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN------------QYKATI--GADFLTKEVQF------------------ED   54 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~------------~~~~~~--~~~~~~~~~~~------------------~~   54 (206)
                      ....|+++|+.|+|||||++++.......            ......  ........+..                  ..
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            36788999999999999999987541100            000000  00000000000                  00


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  134 (206)
                      ....+.+++|.|.-....   .+.-..+..+.++|+.+.+...  ......+          ..|.++++||+|+.+.. 
T Consensus       101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~~----------~~a~iiv~NK~Dl~~~~-  164 (207)
T TIGR00073       101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKYPGMF----------KEADLIVINKADLAEAV-  164 (207)
T ss_pred             CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhhHhHH----------hhCCEEEEEHHHccccc-
Confidence            124667888888211111   1112345556788887543211  1111111          45789999999997531 


Q ss_pred             ceecHHHHHHHHHH-cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          135 RVVSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                       ....+........ ....+++++|++++.|++++++++.+.
T Consensus       165 -~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       165 -GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence             1122233333322 234789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>smart00275 G_alpha G protein alpha subunit

Probab=99.39  E-value=2.6e-11  Score=92.28  Aligned_cols=123  Identities=13%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ..+.+||.+|+...+..|..++.+++++|||+|.++..       ....+..-+..+...+......+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            56789999999999999999999999999999999632       11223333334444444444457899999999996


Q ss_pred             CCCC-------------cceecHHHHHHHHHH-----c-----CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          130 DGGN-------------SRVVSEKKAKAWCAS-----K-----GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       130 ~~~~-------------~~~~~~~~~~~~~~~-----~-----~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ....             ......+....+...     .     ..+-++.++|.+..++..+|+.+.+.+.+.
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            3210             011223333322211     1     123456688888889999998888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=3.3e-12  Score=104.17  Aligned_cols=123  Identities=19%  Similarity=0.173  Sum_probs=86.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      +...+|.++|+-.+|||||..+++.....                  .+...+.+.......+.+.+ ...+.++|||||
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH   86 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH   86 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence            45789999999999999999998753221                  11122222333233333333 578999999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV  137 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  137 (206)
                      .+|.......++-+|++++|+|+...-..+.-.-|.. ..    ..   ++|.++++||+|....+....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~----~~---~vp~i~fiNKmDR~~a~~~~~  148 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-AD----KY---GVPRILFVNKMDRLGADFYLV  148 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hh----hc---CCCeEEEEECccccccChhhh
Confidence            9999999999999999999999987444333223322 22    21   889999999999987654433

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.38  E-value=5.2e-12  Score=91.91  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             ccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH
Q 028654           67 QERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW  145 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~  145 (206)
                      .+++..+.+.+++++|++++|+|+.++. ++..+.+|+..+..       .++|+++|+||+|+.+.  .....+....+
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~   93 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIY   93 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHH
Confidence            3566677778899999999999999877 88889999876543       27899999999999753  23333344444


Q ss_pred             HHHcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654          146 CASKGNIPYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       146 ~~~~~~~~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                      . ..+ .+++++||+++.|++++|+.+.+
T Consensus        94 ~-~~g-~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        94 R-NIG-YQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             H-HCC-CeEEEEecCCchhHHHHHhhhcC
Confidence            3 344 78999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.37  E-value=2.4e-11  Score=91.15  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR  135 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~  135 (206)
                      .+.+.|+||+|....   ....+..+|.++++......   ..+..+...+.         ++|.++|+||+|+.+....
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~  190 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG---DDLQGIKAGLM---------EIADIYVVNKADGEGATNV  190 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc---HHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence            367899999994321   12245668888888654432   33333333231         5678999999999864221


Q ss_pred             eecHHHH----HHHHHHc-C-CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          136 VVSEKKA----KAWCASK-G-NIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       136 ~~~~~~~----~~~~~~~-~-~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      .......    ..+.... + ..+++++|++++.|+++++++|.+...
T Consensus       191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            1111111    1111111 1 146899999999999999999998644

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=3.9e-13  Score=97.35  Aligned_cols=193  Identities=15%  Similarity=0.172  Sum_probs=125.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccccee--eEEEEE---------------------------Ee
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGAD--FLTKEV---------------------------QF   52 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~--~~~~~~---------------------------~~   52 (206)
                      ++-.++|.-+|+...||||++.++.+-.   |..+.....+..  |....+                           ..
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            5668899999999999999999987632   111111111100  000000                           00


Q ss_pred             ---CC---eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654           53 ---ED---RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (206)
Q Consensus        53 ---~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  126 (206)
                         .+   -...+.|+|+||++-+...+..-..-.|++++++-.+....-....+.+-.+.-+-      =..++++-||
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~------LkhiiilQNK  188 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK------LKHIIILQNK  188 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh------hceEEEEech
Confidence               00   01356899999999887777766667888888887775332222222222221111      1258999999


Q ss_pred             CCCCCCCcceecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCccCCCCC
Q 028654          127 TDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPDTIDVGGGQQQRSSGC  204 (206)
Q Consensus       127 ~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  204 (206)
                      +|+.......+..+.+..|.+..  .+.|++++||.-+.|++.+.+.|++.++....  ..-.|....+-.+++..|.||
T Consensus       189 iDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR--df~s~prlIVIRSFDVNkPG~  266 (466)
T KOG0466|consen  189 IDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR--DFTSPPRLIVIRSFDVNKPGS  266 (466)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc--ccCCCCcEEEEEeeccCCCCc
Confidence            99998766667777777777654  25799999999999999999999999877433  334455555666677777777


Q ss_pred             C
Q 028654          205 E  205 (206)
Q Consensus       205 ~  205 (206)
                      +
T Consensus       267 e  267 (466)
T KOG0466|consen  267 E  267 (466)
T ss_pred             h
Confidence            4

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.35  E-value=2.3e-11  Score=97.35  Aligned_cols=121  Identities=17%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCc-ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------c---cc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------S---LG   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~---~~   74 (206)
                      ..++|+++|.+|+||||++|.+++.... ... .+.+ ...........+  ..+.++||||-....       .   ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~T-Tr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGT-TSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCc-eEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            4578999999999999999999987643 222 2222 222222223343  578899999943321       1   11


Q ss_pred             cccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           75 VAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        75 ~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ..+++  .+|++++|..++.......-..++..+...+...-  -..+|||.|+.|..++
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence            12333  47999999887632221112244555555554322  2358999999998764

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>smart00053 DYNc Dynamin, GTPase

Probab=99.35  E-value=2.1e-11  Score=87.84  Aligned_cols=69  Identities=14%  Similarity=0.062  Sum_probs=42.0

Q ss_pred             EEEEEeeCCCccc-------------cccccccceec-CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654           57 FTLQIWDTAGQER-------------FQSLGVAFYRG-ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV  122 (206)
Q Consensus        57 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvii  122 (206)
                      ..++++||||-..             ...+...|+++ .+++++|+|+...-.-.....+...+..       .+.|+++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~-------~~~rti~  197 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP-------QGERTIG  197 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH-------cCCcEEE
Confidence            4689999999431             12234456664 5689999988642221222222222221       1679999


Q ss_pred             EeeCCCCCCC
Q 028654          123 LGNKTDVDGG  132 (206)
Q Consensus       123 v~nK~D~~~~  132 (206)
                      |+||.|....
T Consensus       198 ViTK~D~~~~  207 (240)
T smart00053      198 VITKLDLMDE  207 (240)
T ss_pred             EEECCCCCCc
Confidence            9999998764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.34  E-value=2.3e-11  Score=86.31  Aligned_cols=173  Identities=16%  Similarity=0.119  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc-------ccccccccceecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------RFQSLGVAFYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~~~~~~~~~~~~~   81 (206)
                      .++.++|-|++||||++..+.+..........++.........+.+  -++++.|.||.-       ..........+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4889999999999999999988765544444444444444444555  567888999932       2334555667889


Q ss_pred             cEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCC--------------------------------------------
Q 028654           82 DCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPE--------------------------------------------  116 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------------------------------  116 (206)
                      +.+++|.|+..+-+...+.+ -++.+- ...+..++                                            
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~g-irlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da  216 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFG-IRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA  216 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcce-eeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence            99999999987655444322 111100 00001111                                            


Q ss_pred             --------------CCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH-----h
Q 028654          117 --------------NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-----L  177 (206)
Q Consensus       117 --------------~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~-----~  177 (206)
                                    -+|.+.++||+|...       .|++......   ...+++||..+.|++++++.+.+.+     +
T Consensus       217 T~DdLIdvVegnr~yVp~iyvLNkIdsIS-------iEELdii~~i---phavpISA~~~wn~d~lL~~mweyL~LvriY  286 (358)
T KOG1487|consen  217 TADDLIDVVEGNRIYVPCIYVLNKIDSIS-------IEELDIIYTI---PHAVPISAHTGWNFDKLLEKMWEYLKLVRIY  286 (358)
T ss_pred             chhhhhhhhccCceeeeeeeeecccceee-------eeccceeeec---cceeecccccccchHHHHHHHhhcchheEEe
Confidence                          127888899998653       2333222222   3568899999999999999999854     3


Q ss_pred             hcCCCCCCCCCccccCC
Q 028654          178 KNEPQEEDYLPDTIDVG  194 (206)
Q Consensus       178 ~~~~~~~~~~~~~~~~~  194 (206)
                      .++...++....++-.+
T Consensus       287 tkPKgq~PDy~~pVvLs  303 (358)
T KOG1487|consen  287 TKPKGQPPDYTSPVVLS  303 (358)
T ss_pred             cCCCCCCCCCCCCceec
Confidence            33333444444444333

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=3.9e-11  Score=89.83  Aligned_cols=84  Identities=23%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC----------------eEEEEEEeeCCC-----
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED----------------RLFTLQIWDTAG-----   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G-----   66 (206)
                      .++++++|.||+|||||+|+++.........|..|.+.....+.+..                ....+.|+|.+|     
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999999886666777777766665544321                235689999999     


Q ss_pred             --ccccccccccceecCcEEEEEEECC
Q 028654           67 --QERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        67 --~~~~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                        .+.+......-++.+|+++.|+|+.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              2334444445567899999999987

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.34  E-value=7.2e-11  Score=87.93  Aligned_cols=144  Identities=14%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------cccccceeeEEEEEEeCCeEEEEEEeeCCCc------
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ------   67 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------   67 (206)
                      ++...++|+++|+.|+|||||+|.|++......          ..++.....+...+.-++..+.+.++||||-      
T Consensus        19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN   98 (373)
T COG5019          19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN   98 (373)
T ss_pred             hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence            345689999999999999999999998743221          2233334444455555677889999999991      


Q ss_pred             ------------cccccccc-------c-ce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee
Q 028654           68 ------------ERFQSLGV-------A-FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (206)
Q Consensus        68 ------------~~~~~~~~-------~-~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n  125 (206)
                                  ++++..+.       . .+  ...|+++|.+.++...--..--..+..+..        .+.+|.|+.
T Consensus        99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~--------~vNlIPVI~  170 (373)
T COG5019          99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK--------RVNLIPVIA  170 (373)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc--------ccCeeeeee
Confidence                        11111000       0 11  347899999998753221111233344433        446999999


Q ss_pred             CCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654          126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus       126 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      |+|..-........+.+.+.....+ +++|.
T Consensus       171 KaD~lT~~El~~~K~~I~~~i~~~n-I~vf~  200 (373)
T COG5019         171 KADTLTDDELAEFKERIREDLEQYN-IPVFD  200 (373)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence            9998754333333334444444444 77664

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.33  E-value=5e-12  Score=92.33  Aligned_cols=157  Identities=16%  Similarity=0.139  Sum_probs=100.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc---------cccccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ---------ERFQSLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~~   77 (206)
                      ...-|.|+|.+|+|||||+++|++........-+-+.+.+.......... .+.+.||-|.         ..|.+. ..-
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-Lee  254 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEE  254 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHH
Confidence            34578999999999999999999766554444444455544444333322 4567799992         222222 223


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|.++.|.|+++|..-......+..+...--...+....++=|-||+|........+           .+  .-+.+
T Consensus       255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-----------~n--~~v~i  321 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-----------KN--LDVGI  321 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-----------cC--Ccccc
Confidence            467999999999999876555555555443332111111224677888998765421111           11  25788


Q ss_pred             eccCCCCHHHHHHHHHHHHhh
Q 028654          158 SAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      |+++|+|++++++.+-.+...
T Consensus       322 saltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  322 SALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ccccCccHHHHHHHHHHHhhh
Confidence            999999999999998876654

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.30  E-value=6.2e-11  Score=83.27  Aligned_cols=146  Identities=15%  Similarity=0.181  Sum_probs=84.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC---------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcc---cccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---RFQSLG   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---~~~~~~   74 (206)
                      -.|+|+|+|.+|.|||||+|.++......         ....|+........+.-.+...++.++||||-.   .....|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            47899999999999999999998654321         112222333333444556777899999999911   111111


Q ss_pred             -----------------------ccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           75 -----------------------VAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        75 -----------------------~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                                             ...+  ...|.++|.+.++..+-..--..++..+....        .++-|+.|+|.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv--------NvvPVIakaDt  196 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV--------NVVPVIAKADT  196 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh--------eeeeeEeeccc
Confidence                                   1111  24678899998876432211134445554433        48999999997


Q ss_pred             CCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      .--..+....+.++.-....+ +.+++--+.+
T Consensus       197 lTleEr~~FkqrI~~el~~~~-i~vYPq~~fd  227 (336)
T KOG1547|consen  197 LTLEERSAFKQRIRKELEKHG-IDVYPQDSFD  227 (336)
T ss_pred             ccHHHHHHHHHHHHHHHHhcC-cccccccccc
Confidence            643333333333333333333 5666554443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=2.2e-11  Score=92.29  Aligned_cols=113  Identities=19%  Similarity=0.266  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCC--------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN--RKFS--------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ...+||-+|.+|||||-..|+-  +.+.                    -+...+.+.......+.|.+  ..+.++||||
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPG   90 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPG   90 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCC
Confidence            4678999999999999998752  2110                    11122333333344444444  6778899999


Q ss_pred             ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      +++|.+.+...+..+|.+++|+|+...-..+.+ +    +...+...   ++|++-++||.|...
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-K----LfeVcrlR---~iPI~TFiNKlDR~~  147 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-K----LFEVCRLR---DIPIFTFINKLDREG  147 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH-H----HHHHHhhc---CCceEEEeecccccc
Confidence            999999888888999999999999864322221 2    22233322   889999999999754

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.3e-10  Score=87.11  Aligned_cols=147  Identities=16%  Similarity=0.260  Sum_probs=86.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC---------cccccceeeEEEEEEeCCeEEEEEEeeCCCcc-------
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------   68 (206)
                      +.-.|.++++|++|.|||||+|.|+...+...         ...+.........+.-++..++++++||||-.       
T Consensus        18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            34569999999999999999999987744321         11122333333444446778899999999911       


Q ss_pred             -----------cccc-------ccccce--ecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           69 -----------RFQS-------LGVAFY--RGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        69 -----------~~~~-------~~~~~~--~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                                 ++..       ..+..+  ...|+++|.+.++... ..-+ ..++..+..        .+.+|.|+.|+
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~--------~vNiIPVI~Ka  168 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK--------KVNLIPVIAKA  168 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc--------cccccceeecc
Confidence                       1111       001122  2588999999987532 1112 223333322        56799999999


Q ss_pred             CCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654          128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      |...........+.+.+-....+ ++++......
T Consensus       169 D~lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~~  201 (366)
T KOG2655|consen  169 DTLTKDELNQFKKRIRQDIEEHN-IKVFDFPTDE  201 (366)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcC-cceecCCCCc
Confidence            98764333333333333333433 6666555443

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.28  E-value=5.7e-10  Score=83.72  Aligned_cols=124  Identities=14%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ..+.++|.+||...+.-|...+.+++++|||+++++.+       ....+.+-+..+...+...--.+.++|+++||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            67889999999988889999999999999999998632       22334555555666666655557899999999997


Q ss_pred             CCC--------------CcceecHHHHHHHHH--------Hc-CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          130 DGG--------------NSRVVSEKKAKAWCA--------SK-GNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       130 ~~~--------------~~~~~~~~~~~~~~~--------~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ...              ... ...++...+..        .. ...-+..+.|.+..+++.+|+.+.+.+.....
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl  348 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL  348 (354)
T ss_pred             HHHHhccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence            431              111 22333322221        11 12345667888889999999999998876543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.27  E-value=1e-10  Score=76.31  Aligned_cols=114  Identities=30%  Similarity=0.378  Sum_probs=74.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcc-cccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997776643332 2222                           222233455678999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      ++..+.++++.+  |...+....    ..+.|.++++||.|+...  .....+...         .++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~----k~dl~~~~~~nk~dl~~~--~~~~~~~~~---------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGN----KSDLPILVGGNRDVLEEE--RQVATEEGL---------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcC----CCCCcEEEEeechhhHhh--CcCCHHHHH---------HHHHHhCCCcchhh
Confidence            999998887654  655554322    125788999999998542  222222222         23456778888774

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=3.7e-11  Score=95.31  Aligned_cols=116  Identities=24%  Similarity=0.273  Sum_probs=82.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----------------ccceeeEEEEE---EeCCeEEEEEEeeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----------------TIGADFLTKEV---QFEDRLFTLQIWDTA   65 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~~   65 (206)
                      ....+++++|+-++|||+|+..|.....+....+                 +.+......++   ...++.+-+.++|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            3467899999999999999999987655322111                 11111111111   225667889999999


Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      |+..|...+...++.+|++++++|+.+.-.+..- ..+....    .   .+.|+++|+||+|+
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai----q---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI----Q---NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH----h---ccCcEEEEEehhHH
Confidence            9999999999999999999999999876554432 2222221    1   17799999999995

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.22  E-value=9.5e-11  Score=86.12  Aligned_cols=57  Identities=18%  Similarity=0.086  Sum_probs=41.1

Q ss_pred             CCcEEEEeeCCCCCCCCcceecHHHHHHHH-HHcCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-ASKGNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       117 ~~pviiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ..+-++|+||+|+.+.  .....+...... ......+++++|+++++|++++.+||.+.
T Consensus       230 ~~ADIVVLNKiDLl~~--~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPY--LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcc--cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999753  122233333333 33446899999999999999999999874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.22  E-value=2.2e-11  Score=87.16  Aligned_cols=152  Identities=18%  Similarity=0.218  Sum_probs=87.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC------CC----CCccccc----------------ceeeEEEEEEeCCe-----
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRK------FS----NQYKATI----------------GADFLTKEVQFEDR-----   55 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~------~~----~~~~~~~----------------~~~~~~~~~~~~~~-----   55 (206)
                      +.+.|.+.|+||+|||||++.|...-      +.    +...+.+                ....+...+.-.+.     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            46789999999999999999986421      00    0011111                11223333322211     


Q ss_pred             -------------EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654           56 -------------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV  122 (206)
Q Consensus        56 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvii  122 (206)
                                   .+.+.|++|.|--+...   ....-+|.+++|.-+...+..+.+..=+.++            .=++
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------aDi~  172 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------ADIF  172 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEE
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------ccEE
Confidence                         25678889888332221   1245689999999988766555543322333            3489


Q ss_pred             EeeCCCCCCCCcceecHHHHHHHHHHcC------CCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          123 LGNKTDVDGGNSRVVSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       123 v~nK~D~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      |+||.|...+   .....+++....-..      ..+++.+||.++.|+++|++.|.+..
T Consensus       173 vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  173 VVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             EEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            9999996553   223333333332211      25899999999999999999998844

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=1.5e-10  Score=90.01  Aligned_cols=168  Identities=25%  Similarity=0.425  Sum_probs=127.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      .-+++|+.|+|..++|||.|+++++.+.|.+...+.. ..+ .+.+.+++....+.+.|.+|..     ...+...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~-~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG-GRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcC-ccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            3468899999999999999999999988876544432 333 4555566766677778888832     23355678999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ||||...+..+++.+..+...+..+..   ...+|.++++++.-......+.+...+...++.......++++.+..|.+
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln  176 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN  176 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence            999999999999988777777655443   33678899998876655555667777777777766668899999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      +...|..+...+.....+
T Consensus       177 v~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  177 VERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999877665444

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.15  E-value=6.2e-10  Score=80.95  Aligned_cols=161  Identities=16%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC----------CCcccccce----------------eeEEEEEEeCC------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS----------NQYKATIGA----------------DFLTKEVQFED------   54 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~----------~~~~~~~~~----------------~~~~~~~~~~~------   54 (206)
                      +...|.+.|.||+|||||+..|......          +...+.++.                ......+.-.+      
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS  129 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS  129 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence            4568999999999999999998653210          111111111                11111111111      


Q ss_pred             ------------eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654           55 ------------RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV  122 (206)
Q Consensus        55 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvii  122 (206)
                                  ..+.+.|++|.|.-+...   .....+|.++++.=+.-.+..+.+..=+.++            -=++
T Consensus       130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi------------aDi~  194 (323)
T COG1703         130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI------------ADII  194 (323)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh------------hhee
Confidence                        135678899998443322   2345689999988777666666554433333            2489


Q ss_pred             EeeCCCCCCCCcceecHHHHHHHHH-----HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          123 LGNKTDVDGGNSRVVSEKKAKAWCA-----SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       123 v~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      |+||.|..++............+..     .....+++.+||.+|+|++++++.|.+..-.....
T Consensus       195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            9999997654221111111111111     12246899999999999999999999876554444

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.2e-09  Score=80.67  Aligned_cols=180  Identities=19%  Similarity=0.156  Sum_probs=114.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC----------CCC----CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNR----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   70 (206)
                      ..+.++|.-||+..-|||||-.++..-          .|.    .......+.++....+.|.-....+.-.|+||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            456789999999999999998887641          111    112333456677777777766667778899999999


Q ss_pred             ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCCCccee-cHHHHHHHHHH
Q 028654           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGNSRVV-SEKKAKAWCAS  148 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~  148 (206)
                      -..+..-....|+.|+|+.++|....+.-..+  .+.++.      ++ .+++.+||.|+.++....+ -..+++++...
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHl--LLArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse  202 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTREHL--LLARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE  202 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchHHHH--HHHHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999985433322221  222222      22 4889999999985432222 22344555555


Q ss_pred             cC----CCcEEEeecc---CCC----CHHHHHHHHHHHHhhcCCCCCCCCCccccC
Q 028654          149 KG----NIPYFETSAK---EGF----NVEAAFECIAKNALKNEPQEEDYLPDTIDV  193 (206)
Q Consensus       149 ~~----~~~~~~~s~~---~~~----~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~  193 (206)
                      ++    +.|++.-||.   ++.    |. +....+++++-..-+.++..+...+..
T Consensus       203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~~pFl~  257 (449)
T KOG0460|consen  203 FGFDGDNTPVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLDKPFLL  257 (449)
T ss_pred             cCCCCCCCCeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCcccccCCCcee
Confidence            43    5788887765   442    22 234444455544445444444444433

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.09  E-value=1.2e-09  Score=81.91  Aligned_cols=164  Identities=18%  Similarity=0.162  Sum_probs=103.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------------ccccceeeEEEEEEeCCe-----------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------------KATIGADFLTKEVQFEDR-----------------   55 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-----------------   55 (206)
                      ..+.+.+.|+...|||||+-.|..++..+..              ....+.++....+-+++.                 
T Consensus       116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v  195 (527)
T COG5258         116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV  195 (527)
T ss_pred             ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence            4678899999999999999998765543211              111222232222222211                 


Q ss_pred             ----EEEEEEeeCCCccccccccccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           56 ----LFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        56 ----~~~~~i~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                          ..-+.|+||.|++.|......-+  .+.|..++++-+++.-+...-..  ..+....      ..|+|+++||+|+
T Consensus       196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--Lgi~~a~------~lPviVvvTK~D~  267 (527)
T COG5258         196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--LGIALAM------ELPVIVVVTKIDM  267 (527)
T ss_pred             hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--hhhhhhh------cCCEEEEEEeccc
Confidence                13468999999998876554333  56899999998887443221111  1111111      7899999999999


Q ss_pred             CCCCcceecHHHHHHHHHHc------------------------CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          130 DGGNSRVVSEKKAKAWCASK------------------------GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      .+++..+...+++....+..                        +-.|++.+|+.+|+|++-|.+. ...+++.
T Consensus       268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~r  340 (527)
T COG5258         268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPKR  340 (527)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCcc
Confidence            88765555555555444321                        1258999999999999765444 4445444

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=99.07  E-value=6e-10  Score=83.37  Aligned_cols=182  Identities=20%  Similarity=0.204  Sum_probs=106.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------CCccccc--ceeeEEEE-----E-------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATI--GADFLTKE-----V-------------   50 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~----------------~~~~~~~--~~~~~~~~-----~-------------   50 (206)
                      .+++++|+|...+|||||+-.|......                .+...+.  +-++....     +             
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            4789999999999999999877543221                0111111  11111000     0             


Q ss_pred             Ee-CCeEEEEEEeeCCCccccccccccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           51 QF-EDRLFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        51 ~~-~~~~~~~~i~D~~G~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      .+ .+....++|+|..|++.|......-.  +..|..++++-++-.- +....+.+...+       ...+|+++|+||+
T Consensus       212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL-------aL~VPVfvVVTKI  283 (641)
T KOG0463|consen  212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL-------ALHVPVFVVVTKI  283 (641)
T ss_pred             eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh-------hhcCcEEEEEEee
Confidence            00 11123578999999999887654433  4478888888766311 111111111111       1178999999999


Q ss_pred             CCCCCCcceecHHHHHHHHHHcC-------------------------CCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          128 DVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      |+-+++-.++....+..+.++.+                         -+|+|.+|..+|+++.-|...+ . ++..+..
T Consensus       284 DMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL-N-lls~R~~  361 (641)
T KOG0463|consen  284 DMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL-N-LLSLRRQ  361 (641)
T ss_pred             ccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH-h-hcCcccc
Confidence            99886555555555555555422                         1479999999999987654433 2 3333344


Q ss_pred             CCCCCCccccCCCCCc
Q 028654          183 EEDYLPDTIDVGGGQQ  198 (206)
Q Consensus       183 ~~~~~~~~~~~~~~~~  198 (206)
                      .++..|..|.+...--
T Consensus       362 ~~E~~PAeFQIDD~Y~  377 (641)
T KOG0463|consen  362 LNENDPAEFQIDDIYW  377 (641)
T ss_pred             cccCCCcceeecceEe
Confidence            4555777777765543

>cd01855 YqeH YqeH

Probab=99.05  E-value=1e-09  Score=77.20  Aligned_cols=96  Identities=24%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHH--
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC--  146 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~--  146 (206)
                      .+...+..++..+|++++|+|+++...     .|...+....     .+.|+++|+||+|+....   ...+....+.  
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~   89 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWLRA   89 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHHHH
Confidence            356677788899999999999987432     1222221111     267999999999997532   2223333332  


Q ss_pred             ---HHcC--CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          147 ---ASKG--NIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       147 ---~~~~--~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                         ...+  ...++++||+++.|++++++.|.+.+.
T Consensus        90 ~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          90 KAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence               2222  236899999999999999999998875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=2.7e-09  Score=79.88  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----------------cccc-------ceeeEEEEEEeC----------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------------KATI-------GADFLTKEVQFE----------   53 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~----------------~~~~-------~~~~~~~~~~~~----------   53 (206)
                      ..++++|+|...+|||||+-.|.++......                ..+.       +.+.....+.|.          
T Consensus       166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e  245 (591)
T KOG1143|consen  166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE  245 (591)
T ss_pred             eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence            4789999999999999999988765432111                1111       111111111111          


Q ss_pred             CeEEEEEEeeCCCccccccccccceec--CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      ....-++|+|..|+..|.......+..  .|.+++++++.....+..- +.+-.+ ...      ++|++++++|+|+..
T Consensus       246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~-~AL------~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLI-AAL------NIPFFVLVTKMDLVD  317 (591)
T ss_pred             hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHH-HHh------CCCeEEEEEeecccc
Confidence            112357899999999998877766654  7899999998764443321 111112 111      889999999999987


Q ss_pred             CCcceecHHHHHH----------------------HHH---HcCCCcEEEeeccCCCCHHHHH
Q 028654          132 GNSRVVSEKKAKA----------------------WCA---SKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       132 ~~~~~~~~~~~~~----------------------~~~---~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      .........++..                      .++   ..+-.|++.+|+..|+|++-+.
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            5322222222222                      111   1234688999999999987543

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=2.2e-09  Score=80.12  Aligned_cols=118  Identities=17%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccccceeeEEEEEEeC------Ce-------------------------
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFE------DR-------------------------   55 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------~~-------------------------   55 (206)
                      ..=|+++|.-+.||||+++.|+..+++.. ..+..+.++-...+.-+      +.                         
T Consensus        58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            34578999999999999999999988722 12222223323322211      00                         


Q ss_pred             --------EEEEEEeeCCCc-----------cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCC
Q 028654           56 --------LFTLQIWDTAGQ-----------ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE  116 (206)
Q Consensus        56 --------~~~~~i~D~~G~-----------~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (206)
                              .-.+.++||||.           -.|......++..+|.++++||+...+-.......+..+..    .   
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~---  210 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H---  210 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C---
Confidence                    014789999992           12334455677899999999999765444444444444432    2   


Q ss_pred             CCcEEEEeeCCCCCCC
Q 028654          117 NFPFVVLGNKTDVDGG  132 (206)
Q Consensus       117 ~~pviiv~nK~D~~~~  132 (206)
                      .-.+-||+||.|.++.
T Consensus       211 EdkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  211 EDKIRVVLNKADQVDT  226 (532)
T ss_pred             cceeEEEeccccccCH
Confidence            2247889999998753

>cd01859 MJ1464 MJ1464

Probab=99.00  E-value=2.3e-09  Score=72.95  Aligned_cols=95  Identities=22%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC
Q 028654           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG  150 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      +......++++|++++|+|++++..... ..+...+.    .   .+.|+++|+||+|+....   . .+....+....+
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~----~---~~~p~iiv~NK~Dl~~~~---~-~~~~~~~~~~~~   70 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL----E---LGKKLLIVLNKADLVPKE---V-LEKWKSIKESEG   70 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH----h---CCCcEEEEEEhHHhCCHH---H-HHHHHHHHHhCC
Confidence            3455667778999999999987543222 11111111    1   167999999999986421   1 112222323333


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                       .+++++|++++.|++++++.|.+.++.
T Consensus        71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          71 -IPVVYVSAKERLGTKILRRTIKELAKI   97 (156)
T ss_pred             -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence             678999999999999999999988763

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.96  E-value=6.7e-09  Score=77.50  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=65.8

Q ss_pred             cccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654           74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .+..+.++|.+++|+|+.++. ++..+.+|+..+...       ++|+++|+||+|+.+.  .  .......+....+ .
T Consensus        72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-------~ip~iIVlNK~DL~~~--~--~~~~~~~~~~~~g-~  139 (287)
T cd01854          72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-------GIEPVIVLTKADLLDD--E--EEELELVEALALG-Y  139 (287)
T ss_pred             ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEEHHHCCCh--H--HHHHHHHHHHhCC-C
Confidence            344578999999999999887 777778887765432       6799999999999753  1  1112222233344 7


Q ss_pred             cEEEeeccCCCCHHHHHHHHHH
Q 028654          153 PYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                      +++.+|++++.|+++++..|..
T Consensus       140 ~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         140 PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             eEEEEECCCCccHHHHHhhhcc
Confidence            8999999999999999887763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.95  E-value=9.2e-09  Score=78.44  Aligned_cols=89  Identities=17%  Similarity=0.112  Sum_probs=62.9

Q ss_pred             cccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654           74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .+..+.++|.+++|+|+.++. ....+..|+.....       .++|+++|+||+|+....  .  .+.........+ .
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~--~--~~~~~~~~~~~g-~  150 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPT--E--QQQWQDRLQQWG-Y  150 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChH--H--HHHHHHHHHhcC-C
Confidence            344578999999999998765 34455666655422       178999999999997431  1  122222223444 6


Q ss_pred             cEEEeeccCCCCHHHHHHHHHH
Q 028654          153 PYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                      +++++|++++.|+++|++.+..
T Consensus       151 ~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        151 QPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             eEEEEEcCCCCCHHHHhhhhcc
Confidence            8999999999999999988864

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.93  E-value=3.9e-09  Score=75.95  Aligned_cols=157  Identities=18%  Similarity=0.166  Sum_probs=92.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-ccceeeEEEEEEeCCeEEEEEEeeCCC----------ccccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL   73 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~   73 (206)
                      +.....+++.|.+++|||+|+|.++.......... ..+.+.....+.+.   ..+.++|.||          ..++...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence            45568999999999999999999987655422222 44443333334333   3677889999          2333444


Q ss_pred             cccceec---CcEEEEEEECCChhh-HH-HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc--ceecHHHHHH--
Q 028654           74 GVAFYRG---ADCCVLVYDVNVMKS-FD-NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--RVVSEKKAKA--  144 (206)
Q Consensus        74 ~~~~~~~---~d~vi~v~d~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--~~~~~~~~~~--  144 (206)
                      ...|+.+   ---+.+.+|++.+-. .+ ....|+.+.          ++|.-+|.||+|......  .......+..  
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f  279 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF  279 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence            4445433   224456677764221 11 124454443          899999999999754321  0111111111  


Q ss_pred             --HHHH--cCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654          145 --WCAS--KGNIPYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       145 --~~~~--~~~~~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                        +.+.  ....+.+.+|+.++.|++.|+-.|.+
T Consensus       280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhccccceeccCCceeeecccccCceeeeeehhh
Confidence              1111  11246678999999999998877765

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=3.1e-09  Score=75.00  Aligned_cols=171  Identities=17%  Similarity=0.252  Sum_probs=103.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeE--EEEEEeCCeEEEEEEeeCCCccccccc---cccceecCc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL--TKEVQFEDRLFTLQIWDTAGQERFQSL---GVAFYRGAD   82 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d   82 (206)
                      ..+|+++|...||||++....+.+-.+.   .|.-...+  ...-.+.+.-+.+.+||.||+-.+..-   ....++.+-
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            3569999999999999987765543221   11100000  001112233468999999997654332   234578899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--------cCCCcE
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--------KGNIPY  154 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~  154 (206)
                      ++|+|+|+.+. -.+.+..+...+.+...  -.+++.+=+.+.|.|-...+.+...+..+.+....        .-.+.|
T Consensus       104 ALifvIDaQdd-y~eala~L~~~v~rayk--vNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf  180 (347)
T KOG3887|consen  104 ALIFVIDAQDD-YMEALARLHMTVERAYK--VNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSF  180 (347)
T ss_pred             eEEEEEechHH-HHHHHHHHHHHhhheee--cCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEE
Confidence            99999998752 23334444444444332  23477788999999987654444444333332221        111345


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCCCCCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEPQEED  185 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~~~~  185 (206)
                      +-+|- -...+-+.|..+++++..+.+.-+.
T Consensus       181 ~LTSI-yDHSIfEAFSkvVQkLipqLptLEn  210 (347)
T KOG3887|consen  181 YLTSI-YDHSIFEAFSKVVQKLIPQLPTLEN  210 (347)
T ss_pred             EEeee-cchHHHHHHHHHHHHHhhhchhHHH
Confidence            55555 4458899999999999888776443

>TIGR00092 GTP-binding protein YchF

Probab=98.92  E-value=1.1e-08  Score=77.85  Aligned_cols=83  Identities=22%  Similarity=0.055  Sum_probs=61.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc---
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER---   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~---   69 (206)
                      ++++++|.|++|||||++++++... .....|.++.......+.+.+.               ...+.+.|.||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999877 5555566666666666655442               23678999999322   


Q ss_pred             ----cccccccceecCcEEEEEEECC
Q 028654           70 ----FQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        70 ----~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                          ........++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223444568899999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.92  E-value=3.9e-09  Score=70.59  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=36.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      +++++|.+|+|||||+|++.+..... ...+..  +.....+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK--TKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc--ccceEEEEeCC---CEEEEECCCc
Confidence            78999999999999999999876542 222222  22233344443   5789999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.91  E-value=3.5e-09  Score=72.97  Aligned_cols=54  Identities=22%  Similarity=0.364  Sum_probs=38.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      .++++++|.+|+|||||+|++.+... .....+++|....  .+.++   ..+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~---~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLD---KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeC---CCEEEEECcC
Confidence            47999999999999999999998664 3444444444333  22333   2578999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK12288 GTPase RsgA; Reviewed

Probab=98.91  E-value=1.7e-08  Score=76.94  Aligned_cols=89  Identities=15%  Similarity=0.095  Sum_probs=65.2

Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+.++|.+++|++.....++..+..|+.....       .++|+++|+||+|+........ .+.........+ .++++
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~  187 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLM  187 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEE
Confidence            35779999999999888888888888765432       1679999999999975421111 122222233444 78999


Q ss_pred             eeccCCCCHHHHHHHHHH
Q 028654          157 TSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~  174 (206)
                      +|++++.|+++|++.|..
T Consensus       188 vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        188 VSSHTGEGLEELEAALTG  205 (347)
T ss_pred             EeCCCCcCHHHHHHHHhh
Confidence            999999999999998865

>PRK00098 GTPase RsgA; Reviewed

Probab=98.91  E-value=1e-08  Score=76.94  Aligned_cols=87  Identities=20%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             cceecCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+.++|.+++|+|+.++..... +..|+..+..       .++|+++|+||+|+...  .. ..+.........+ .++
T Consensus        76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~v  144 (298)
T PRK00098         76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YDV  144 (298)
T ss_pred             ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-CeE
Confidence            34689999999999988765443 4667665532       17799999999999632  11 2223333344444 789


Q ss_pred             EEeeccCCCCHHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECIA  173 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~  173 (206)
                      +++|++++.|++++++.+.
T Consensus       145 ~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        145 LELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EEEeCCCCccHHHHHhhcc
Confidence            9999999999999988764

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.89  E-value=6.6e-09  Score=76.77  Aligned_cols=88  Identities=24%  Similarity=0.207  Sum_probs=66.4

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC---------------eEEEEEEeeCCC--
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAG--   66 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~G--   66 (206)
                      +..+.+++.++|.|++|||||+|+|++........|..|.+.....+.+..               ....++++|+.|  
T Consensus        16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            445678999999999999999999999887777778877777766665422               345789999999  


Q ss_pred             -----ccccccccccceecCcEEEEEEECC
Q 028654           67 -----QERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        67 -----~~~~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                           ...+......-++.+|+++-|+++.
T Consensus        96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cCcccCcCchHHHHHhhhhccceeEEEEec
Confidence                 2223333444567799999998875

>cd01858 NGP_1 NGP-1

Probab=98.87  E-value=8.8e-09  Score=70.17  Aligned_cols=55  Identities=18%  Similarity=0.212  Sum_probs=36.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ...+|+++|.+|+|||||+|+|.+.... ....+.++..  ...+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            3578899999999999999999986543 2223333222  22222222   367899999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=4e-08  Score=77.43  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=85.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      .+++-++|+||+|+|||||+..|..+-.........     ....-+.++...++|+.+|.+   ...+....+-+|.++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~-----GPiTvvsgK~RRiTflEcp~D---l~~miDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIR-----GPITVVSGKTRRITFLECPSD---LHQMIDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccC-----CceEEeecceeEEEEEeChHH---HHHHHhHHHhhheeE
Confidence            457888899999999999999988653211111111     111124567789999999942   223455677899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH------HHHHHHcCCCcEEEeec
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA------KAWCASKGNIPYFETSA  159 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s~  159 (206)
                      +++|.+-.-..+.+ .++..+    ..++.+  .++-|+|+.|+.....   .....      ..|..-++++.+|.+|.
T Consensus       139 LlIdgnfGfEMETm-EFLnil----~~HGmP--rvlgV~ThlDlfk~~s---tLr~~KKrlkhRfWtEiyqGaKlFylsg  208 (1077)
T COG5192         139 LLIDGNFGFEMETM-EFLNIL----ISHGMP--RVLGVVTHLDLFKNPS---TLRSIKKRLKHRFWTEIYQGAKLFYLSG  208 (1077)
T ss_pred             EEeccccCceehHH-HHHHHH----hhcCCC--ceEEEEeecccccChH---HHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence            99999853332322 233333    233222  3789999999976421   11111      23444556688888887


Q ss_pred             cCC
Q 028654          160 KEG  162 (206)
Q Consensus       160 ~~~  162 (206)
                      ..+
T Consensus       209 V~n  211 (1077)
T COG5192         209 VEN  211 (1077)
T ss_pred             ccc
Confidence            643

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.80  E-value=2.6e-08  Score=76.69  Aligned_cols=96  Identities=22%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--
Q 028654           67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--  144 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--  144 (206)
                      ++++......+.+.++++++|+|+.+..     ..|...+.....     +.|+++|+||+|+.+.   ....+.+..  
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k---~~~~~~~~~~l  116 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPK---SVNLSKIKEWM  116 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCC---CCCHHHHHHHH
Confidence            5677777788888999999999997643     234444444432     5689999999999753   222333333  


Q ss_pred             --HHHHcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028654          145 --WCASKGN--IPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       145 --~~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                        ++...+.  ..++.+||+++.|++++++.|.+.
T Consensus       117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence              3444442  258999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.80  E-value=4.4e-08  Score=76.39  Aligned_cols=119  Identities=15%  Similarity=0.160  Sum_probs=74.9

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ..+.++|.+|+...+.-|..++.+++++|||+++++-.       ....+..-+..+...+......+.|+++++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            57789999999988899999999999999999987421       11223333334444444333347899999999995


Q ss_pred             CC-----CC----------cc-eecHHHHHHHHHH--------c---CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          130 DG-----GN----------SR-VVSEKKAKAWCAS--------K---GNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       130 ~~-----~~----------~~-~~~~~~~~~~~~~--------~---~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ..     ..          .. ....+....+...        .   ..+.+..++|.+..++..+|+.+.+.
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            21     11          01 1233333333321        1   11245577888888888888887764

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01855 YqeH YqeH

Probab=98.79  E-value=9.6e-09  Score=72.23  Aligned_cols=54  Identities=20%  Similarity=0.379  Sum_probs=36.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC---------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ..+++++|.+|+|||||+|+|.+...         .....+++|...  ..+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL--IKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee--EEEecCC---CCEEEeCcC
Confidence            35799999999999999999997542         223334433333  3333332   468999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.76  E-value=1.3e-07  Score=68.09  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=54.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcc-cccceeeEEEEEEeC-CeEEEEEEeeCCCcccccc------cc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQS------LG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~   74 (206)
                      ..+..-|.|+|++++|||||+|.|++.  .+..... ...|..+..+...+. +....+.++||+|......      ..
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            345567889999999999999999998  5542221 222233333333221 2346899999999433221      12


Q ss_pred             ccceec--CcEEEEEEECCC
Q 028654           75 VAFYRG--ADCCVLVYDVNV   92 (206)
Q Consensus        75 ~~~~~~--~d~vi~v~d~~~   92 (206)
                      ...+..  ++++||..+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          84 LFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcc
Confidence            233334  888888888764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3.6e-08  Score=79.77  Aligned_cols=116  Identities=19%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC------------CC--CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF------------SN--QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   71 (206)
                      ....+++++.+...|||||+..|.....            .+  ....+.+.+.....+...-..+.+.++|+||+-+|.
T Consensus         7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~   86 (887)
T KOG0467|consen    7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS   86 (887)
T ss_pred             CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence            3467899999999999999999875432            11  111222333333334444456788999999999999


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      +....+..-+|++++.+|+...-..+..     .+.+++...   +...++|+||+|.
T Consensus        87 sevssas~l~d~alvlvdvvegv~~qt~-----~vlrq~~~~---~~~~~lvinkidr  136 (887)
T KOG0467|consen   87 SEVSSASRLSDGALVLVDVVEGVCSQTY-----AVLRQAWIE---GLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhcCCcEEEEeeccccchhHH-----HHHHHHHHc---cCceEEEEehhhh
Confidence            9999999999999999999864322221     111111111   5578999999993

>cd01856 YlqF YlqF

Probab=98.76  E-value=3e-08  Score=68.49  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ..++++++|.+|+|||||+|++.+..+. ....+.++  .....+.+.   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence            3478999999999999999999987653 22223333  333333333   35789999993

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.72  E-value=4.7e-08  Score=72.66  Aligned_cols=56  Identities=23%  Similarity=0.436  Sum_probs=39.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ..++++++|.+|+|||||+|+|.+.... ....+++|...  ..+.+..   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            4689999999999999999999986543 33334433332  3333332   5689999995

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.72  E-value=6.3e-08  Score=72.40  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=39.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ..++++++|.+|+|||||+|+|.+... .....++.|...  ..+..+.   .+.++||||.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCc
Confidence            467999999999999999999998764 233344443333  2333332   5779999994

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.6e-07  Score=73.42  Aligned_cols=118  Identities=21%  Similarity=0.276  Sum_probs=70.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-ccccceeeE---------------------------------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFL---------------------------------------   46 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~---------------------------------------   46 (206)
                      ...||++.|..++||||++|+++.....+.. .+++.+-..                                       
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            3568999999999999999999876543221 111100000                                       


Q ss_pred             ---EEEEEeCCeE-----EEEEEeeCCC---ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCC
Q 028654           47 ---TKEVQFEDRL-----FTLQIWDTAG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP  115 (206)
Q Consensus        47 ---~~~~~~~~~~-----~~~~i~D~~G---~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (206)
                         ...+-+....     -.+.++|.||   ..+...........+|++|+|.++.+..+... ..++...    ...  
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v----s~~--  260 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV----SEE--  260 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh----hcc--
Confidence               0000011110     1468899999   44555556667788999999999987554433 2333333    221  


Q ss_pred             CCCcEEEEeeCCCCCCC
Q 028654          116 ENFPFVVLGNKTDVDGG  132 (206)
Q Consensus       116 ~~~pviiv~nK~D~~~~  132 (206)
                       +..++|+.||.|...+
T Consensus       261 -KpniFIlnnkwDasas  276 (749)
T KOG0448|consen  261 -KPNIFILNNKWDASAS  276 (749)
T ss_pred             -CCcEEEEechhhhhcc
Confidence             3347777888898755

>cd01856 YlqF YlqF

Probab=98.71  E-value=5.9e-08  Score=67.05  Aligned_cols=91  Identities=22%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ......++.+|++++|+|++++...... .+..    ...     +.|+++|+||+|+.+.  .  ......++..... 
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~~-----~k~~ilVlNK~Dl~~~--~--~~~~~~~~~~~~~-   75 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----ILG-----NKPRIIVLNKADLADP--K--KTKKWLKYFESKG-   75 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hhc-----CCCEEEEEehhhcCCh--H--HHHHHHHHHHhcC-
Confidence            4456677899999999999865432211 1111    111     5689999999999642  1  1111112222222 


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          152 IPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ..++.+|++++.|++++.+.+.+.+.
T Consensus        76 ~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          76 EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            56899999999999999999998764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=98.71  E-value=9.8e-08  Score=64.99  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=56.7

Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      ..++.+|++++|+|+.++..... ..+...+...     ..+.|+++|+||+|+.+.   ....+....+..... ...+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~-----~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~-~~~~   73 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE-----KPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYP-TIAF   73 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhc-----cCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCc-EEEE
Confidence            35678999999999987632211 1222222211     115799999999999643   111122222222222 2357


Q ss_pred             EeeccCCCCHHHHHHHHHHHH
Q 028654          156 ETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      ++|++++.|++++++.+.+.+
T Consensus        74 ~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          74 HASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EeeccccccHHHHHHHHHHHH
Confidence            899999999999999997754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.70  E-value=4.7e-08  Score=66.41  Aligned_cols=55  Identities=20%  Similarity=0.284  Sum_probs=38.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ...+++++|.+|+|||||+|.+.+... .....+.++......  ...   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec---CCEEEEECCC
Confidence            457899999999999999999998653 233344444443332  222   3578999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=5.3e-08  Score=70.28  Aligned_cols=118  Identities=20%  Similarity=0.343  Sum_probs=72.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc----cceeeEEEEEEeCCeEEEEEEeeCCC-------cccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT----IGADFLTKEVQFEDRLFTLQIWDTAG-------QERFQSLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~G-------~~~~~~~~   74 (206)
                      .-.++|+-+|.+|.|||||++.|++-.+...+.+.    .........+.-.+..++++++||.|       .+.+....
T Consensus        40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV  119 (406)
T KOG3859|consen   40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV  119 (406)
T ss_pred             CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence            34789999999999999999999988776443333    22233333333456778899999999       11111111


Q ss_pred             -------ccc-------------e--ecCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           75 -------VAF-------------Y--RGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        75 -------~~~-------------~--~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                             ..|             +  ...++++|.+.++.. ++..+.- .+..+..        .+.+|-|+.|.|...
T Consensus       120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Lds--------kVNIIPvIAKaDtis  190 (406)
T KOG3859|consen  120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLDS--------KVNIIPVIAKADTIS  190 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHhh--------hhhhHHHHHHhhhhh
Confidence                   111             1  346899999998853 2222211 1222222        456888899999764


Q ss_pred             C
Q 028654          132 G  132 (206)
Q Consensus       132 ~  132 (206)
                      .
T Consensus       191 K  191 (406)
T KOG3859|consen  191 K  191 (406)
T ss_pred             H
Confidence            3

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=7.8e-08  Score=76.16  Aligned_cols=119  Identities=22%  Similarity=0.201  Sum_probs=79.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-----C-----------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-----Q-----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   70 (206)
                      ...+|.+.-+-.+||||+-++++......     .           .....+.++...-.....+...+.++||||+-+|
T Consensus        38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF  117 (721)
T KOG0465|consen   38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF  117 (721)
T ss_pred             hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence            45688889999999999999876422110     0           0011122333333333444688999999999999


Q ss_pred             ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      .-.....++-.|++++++|+...-..+...-| .++.++       ++|.+..+||.|..++.
T Consensus       118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry-------~vP~i~FiNKmDRmGa~  172 (721)
T KOG0465|consen  118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY-------NVPRICFINKMDRMGAS  172 (721)
T ss_pred             EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc-------CCCeEEEEehhhhcCCC
Confidence            99999999999999999998754332332223 223322       88999999999987643

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.66  E-value=6.7e-08  Score=73.20  Aligned_cols=55  Identities=22%  Similarity=0.400  Sum_probs=39.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      .++++++|.|++|||||||+|.++... ....|+.|  -....+....   .+.++||||.
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCc
Confidence            478999999999999999999998753 34444433  3333343333   3789999993

>cd01859 MJ1464 MJ1464

Probab=98.66  E-value=1.1e-07  Score=64.67  Aligned_cols=55  Identities=25%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ..+++++|.+++|||||+|++.+... ....++.+.+.....+..+.   .+.+|||||
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            56889999999999999999987553 22233333332222222222   688999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.63  E-value=2.8e-07  Score=80.87  Aligned_cols=113  Identities=23%  Similarity=0.327  Sum_probs=64.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCc----cc--ccceeeEEEEEEeCCeEEEEEEeeCCC----cc----cccccccc
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQY----KA--TIGADFLTKEVQFEDRLFTLQIWDTAG----QE----RFQSLGVA   76 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~   76 (206)
                      .+|+|++|+||||++..- +..++-..    ..  +.+.+. ....-+.+   ...++||+|    ++    .....+..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            479999999999999876 33333111    11  111111 12222333   345889999    21    11222333


Q ss_pred             ce---------ecCcEEEEEEECCCh-----hhH----HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           77 FY---------RGADCCVLVYDVNVM-----KSF----DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        77 ~~---------~~~d~vi~v~d~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ++         ...|++|+++|+.+-     +..    ..+...+.++...+..    ..||.+++||+|+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~----~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA----RFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEEecchhhcC
Confidence            33         348999999998752     111    1233344444444433    7899999999998864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.63  E-value=3.1e-07  Score=62.42  Aligned_cols=84  Identities=19%  Similarity=0.091  Sum_probs=53.6

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      |++++|+|+.++.+...  .++..  .....   .+.|+++|+||+|+.+.  . ...+....+.... ...++.+|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~---~~~p~IiVlNK~Dl~~~--~-~~~~~~~~~~~~~-~~~ii~vSa~~   69 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER--VLIKE---KGKKLILVLNKADLVPK--E-VLRKWLAYLRHSY-PTIPFKISATN   69 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH--HHHhc---CCCCEEEEEechhcCCH--H-HHHHHHHHHHhhC-CceEEEEeccC
Confidence            68999999987654432  22221  11111   16799999999999642  1 1111122232222 36789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028654          162 GFNVEAAFECIAKNA  176 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~  176 (206)
                      +.|++++++.|.+..
T Consensus        70 ~~gi~~L~~~i~~~~   84 (155)
T cd01849          70 GQGIEKKESAFTKQT   84 (155)
T ss_pred             CcChhhHHHHHHHHh
Confidence            999999999987754

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.62  E-value=3.6e-08  Score=66.52  Aligned_cols=24  Identities=42%  Similarity=0.710  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|++|+|||||+|.|....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            367899999999999999999863

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.58  E-value=2.8e-07  Score=62.78  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++|..|+|||||++.+...
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            578999999999999998765

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.56  E-value=3e-07  Score=68.42  Aligned_cols=102  Identities=22%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             CCCcc-ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH
Q 028654           64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (206)
Q Consensus        64 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~  142 (206)
                      .|||. .........++.+|++++|+|+..+.+...  ..+..+   ..     +.|+++|+||+|+.+..   . .+..
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~---l~-----~kp~IiVlNK~DL~~~~---~-~~~~   69 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEI---RG-----NKPRLIVLNKADLADPA---V-TKQW   69 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHH---HC-----CCCEEEEEEccccCCHH---H-HHHH
Confidence            45643 233445667889999999999987544322  111111   11     56999999999996421   1 1111


Q ss_pred             HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ..+....+ .+++.+|++++.|++++.+.+.+.+.+..
T Consensus        70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~~  106 (276)
T TIGR03596        70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEKN  106 (276)
T ss_pred             HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence            11222223 57899999999999999999988876543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.55  E-value=1.3e-06  Score=68.14  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 028654            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      +.-|+++|++||||||++..|.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4578999999999999998885

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.54  E-value=5.9e-06  Score=63.56  Aligned_cols=176  Identities=15%  Similarity=0.181  Sum_probs=98.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCcccccceeeEE----------EEEEe-CCeEEEEEEe
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF--------------SNQYKATIGADFLT----------KEVQF-EDRLFTLQIW   62 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~i~   62 (206)
                      .+-|+|+||..+|||||+.+|...-+              ...+++..+.++..          ..+.+ ++..+++.++
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            46789999999999999999976322              12222222222221          12223 4567888999


Q ss_pred             eCCCc----------cc---------ccccc----------ccce--ecCcEEEEEEECCC----hhhHHHH-HHHHHHH
Q 028654           63 DTAGQ----------ER---------FQSLG----------VAFY--RGADCCVLVYDVNV----MKSFDNL-NNWREEF  106 (206)
Q Consensus        63 D~~G~----------~~---------~~~~~----------~~~~--~~~d~vi~v~d~~~----~~~~~~~-~~~~~~~  106 (206)
                      ||-|-          ++         |....          +..+  +..-++++.-|.+-    ++.+..+ .+...++
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            99990          00         00000          0111  22337777777652    3343333 4444555


Q ss_pred             HHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCCC-CC
Q 028654          107 LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE-ED  185 (206)
Q Consensus       107 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~~-~~  185 (206)
                      ...       ++|+++++|-.+-.    .....+...++...++ ++++++++.+- .-+++..-+.+.+++-+-.+ +-
T Consensus       177 k~i-------gKPFvillNs~~P~----s~et~~L~~eL~ekY~-vpVlpvnc~~l-~~~DI~~Il~~vLyEFPV~Ei~~  243 (492)
T PF09547_consen  177 KEI-------GKPFVILLNSTKPY----SEETQELAEELEEKYD-VPVLPVNCEQL-REEDITRILEEVLYEFPVSEINI  243 (492)
T ss_pred             HHh-------CCCEEEEEeCCCCC----CHHHHHHHHHHHHHhC-CcEEEeehHHc-CHHHHHHHHHHHHhcCCceEEEe
Confidence            443       78999999987633    3355556666666776 89999888643 33444444444444443332 23


Q ss_pred             CCCccccCCCC
Q 028654          186 YLPDTIDVGGG  196 (206)
Q Consensus       186 ~~~~~~~~~~~  196 (206)
                      .+|.|+..=..
T Consensus       244 ~lP~Wve~L~~  254 (492)
T PF09547_consen  244 NLPKWVEMLED  254 (492)
T ss_pred             ecchHHhhcCC
Confidence            36776655444

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.54  E-value=1.4e-06  Score=68.71  Aligned_cols=82  Identities=15%  Similarity=0.213  Sum_probs=49.6

Q ss_pred             EEEEeeCCCc-------------cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEe
Q 028654           58 TLQIWDTAGQ-------------ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG  124 (206)
Q Consensus        58 ~~~i~D~~G~-------------~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~  124 (206)
                      ...++|.||.             +....+...+..+.+++|+|+--..-+.   -......+-..+.   +-+...|+|+
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA---ERSnVTDLVsq~D---P~GrRTIfVL  486 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA---ERSIVTDLVSQMD---PHGRRTIFVL  486 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch---hhhhHHHHHHhcC---CCCCeeEEEE
Confidence            5688999991             2233344567788999999985432211   1111122222223   3377899999


Q ss_pred             eCCCCCCCCcceecHHHHHHHHH
Q 028654          125 NKTDVDGGNSRVVSEKKAKAWCA  147 (206)
Q Consensus       125 nK~D~~~~~~~~~~~~~~~~~~~  147 (206)
                      ||.|+.+.  .....+.++.+..
T Consensus       487 TKVDlAEk--nlA~PdRI~kIle  507 (980)
T KOG0447|consen  487 TKVDLAEK--NVASPSRIQQIIE  507 (980)
T ss_pred             eecchhhh--ccCCHHHHHHHHh
Confidence            99999875  3455566666554

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.53  E-value=6.1e-07  Score=67.80  Aligned_cols=95  Identities=18%  Similarity=0.078  Sum_probs=52.6

Q ss_pred             EEEEEEeeCCCccccccc----cccc--------eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654           56 LFTLQIWDTAGQERFQSL----GVAF--------YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~----~~~~--------~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  123 (206)
                      .+.+.++||||.......    ....        -...+..++|+|++...  ..+.. ...+....       .+.-+|
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~giI  265 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLTGII  265 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCCEEE
Confidence            357899999995332211    1111        12467889999998532  22221 12222111       145789


Q ss_pred             eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHH
Q 028654          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~  169 (206)
                      +||.|.....      -.+-......+ .|+..++  +|++++++.
T Consensus       266 lTKlD~t~~~------G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        266 LTKLDGTAKG------GVVFAIADELG-IPIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             EECCCCCCCc------cHHHHHHHHHC-CCEEEEe--CCCChhhCc
Confidence            9999965321      12223333444 7888888  777777664

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.53  E-value=2.7e-06  Score=56.76  Aligned_cols=56  Identities=30%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      +..+|.+-|+||+||||++..+...--...   ..-..+....+.-+++..-|.++|+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence            457999999999999999988875431111   11234555566667777777788877

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=3.7e-08  Score=74.90  Aligned_cols=117  Identities=21%  Similarity=0.261  Sum_probs=86.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--------CCC--------CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK--------FSN--------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   71 (206)
                      ..+|.++..-.+||||.-.+++.-.        +..        ......+.++...-+.++.+..++.++||||+.+|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            4589999999999999998876421        110        011123456666677777777899999999999999


Q ss_pred             cccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        72 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      -.....++-.|+++.|||++..-..+.+.-|...        +.-++|.+.++||+|...+
T Consensus       117 leverclrvldgavav~dasagve~qtltvwrqa--------dk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA--------DKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeehhc--------cccCCchhhhhhhhhhhhh
Confidence            9899999999999999999865444444444322        2227899999999998754

>PRK01889 GTPase RsgA; Reviewed

Probab=98.48  E-value=1.5e-06  Score=66.94  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .+.++|.+++|+++...-....+.+++..+...       +++.++|+||+|+.+.  ..   +....+......++++.
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~-------~i~piIVLNK~DL~~~--~~---~~~~~~~~~~~g~~Vi~  176 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES-------GAEPVIVLTKADLCED--AE---EKIAEVEALAPGVPVLA  176 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc-------CCCEEEEEEChhcCCC--HH---HHHHHHHHhCCCCcEEE
Confidence            368899999999997444444556665554432       6788999999999753  11   12222222233478999


Q ss_pred             eeccCCCCHHHHHHHHH
Q 028654          157 TSAKEGFNVEAAFECIA  173 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~  173 (206)
                      +|++++.|+++|..++.
T Consensus       177 vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        177 VSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EECCCCccHHHHHHHhh
Confidence            99999999999888874

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.46  E-value=9e-07  Score=65.52  Aligned_cols=96  Identities=15%  Similarity=0.059  Sum_probs=53.9

Q ss_pred             EEEEEEeeCCCccccccccc-------cce-----ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654           56 LFTLQIWDTAGQERFQSLGV-------AFY-----RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~-------~~~-----~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  123 (206)
                      .+.+.++||||.........       ...     ..+|.+++|+|++...  +.+. ....+.+..      + +.-+|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~------~-~~g~I  223 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV------G-LTGII  223 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC------C-CCEEE
Confidence            36789999999543322211       111     2388999999997432  2222 122332222      1 35788


Q ss_pred             eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~  170 (206)
                      +||.|.....      -..-.+....+ .|+..++  +|++++++..
T Consensus       224 lTKlDe~~~~------G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       224 LTKLDGTAKG------GIILSIAYELK-LPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             EEccCCCCCc------cHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence            9999975432      12223333344 7777777  6777776543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.46  E-value=2.9e-07  Score=69.78  Aligned_cols=94  Identities=18%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             EEEEEeeCCCcccccc----ccccc--eecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           57 FTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ..+.++||+|......    .....  ....|.+++|+|+..... ...+    ..+....      + .--+|+||.|.
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~------~-~~giIlTKlD~  291 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV------G-IDGVILTKVDA  291 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC------C-CCEEEEeeecC
Confidence            4689999999543221    11111  135788999999875322 2222    2222111      1 35788999998


Q ss_pred             CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~  170 (206)
                      .....      .+-......+ .|+..++  +|++++++..
T Consensus       292 ~~~~G------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        292 DAKGG------AALSIAYVIG-KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             CCCcc------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence            64321      1222222333 7778777  7888877653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.46  E-value=5.4e-07  Score=68.87  Aligned_cols=22  Identities=45%  Similarity=0.758  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|.+|+|||||+|+|.+..
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            6899999999999999999764

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.45  E-value=7e-07  Score=59.67  Aligned_cols=76  Identities=20%  Similarity=0.145  Sum_probs=48.8

Q ss_pred             ccceecCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      ...+..+|++++|+|+.++.+..  .+..|+...    .    .+.|+++|+||+|+.+.  .  ............+ .
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~----~~k~~iivlNK~DL~~~--~--~~~~~~~~~~~~~-~   72 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D----PRKKNILLLNKADLLTE--E--QRKAWAEYFKKEG-I   72 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c----CCCcEEEEEechhcCCH--H--HHHHHHHHHHhcC-C
Confidence            34567899999999998765433  233333221    1    26799999999999643  1  1223333344444 6


Q ss_pred             cEEEeeccCCC
Q 028654          153 PYFETSAKEGF  163 (206)
Q Consensus       153 ~~~~~s~~~~~  163 (206)
                      .++++|+.++.
T Consensus        73 ~ii~iSa~~~~   83 (141)
T cd01857          73 VVVFFSALKEN   83 (141)
T ss_pred             eEEEEEecCCC
Confidence            78999998765

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.42  E-value=6.4e-07  Score=69.08  Aligned_cols=54  Identities=26%  Similarity=0.469  Sum_probs=36.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      .+++++|.+|+|||||+|+|.+...      .....|.+|....  .+...+   .+.++||||-
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~---~~~l~DtPG~  214 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDD---GHSLYDTPGI  214 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCC---CCEEEECCCC
Confidence            4799999999999999999997532      2333444443332  333322   3468999994

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.42  E-value=1.6e-06  Score=66.94  Aligned_cols=93  Identities=26%  Similarity=0.351  Sum_probs=59.8

Q ss_pred             ccccccccceecCc-EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH--
Q 028654           69 RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW--  145 (206)
Q Consensus        69 ~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~--  145 (206)
                      .+..... .+...+ .+++|+|+.+..     ..|...+.....     +.|+++|+||+|+.+.   ....+.+..+  
T Consensus        58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~---~~~~~~i~~~l~  123 (365)
T PRK13796         58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPK---SVKKNKVKNWLR  123 (365)
T ss_pred             HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCC---ccCHHHHHHHHH
Confidence            4444333 334445 999999998633     233444444332     5689999999999753   2223333333  


Q ss_pred             --HHHcCC--CcEEEeeccCCCCHHHHHHHHHHH
Q 028654          146 --CASKGN--IPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       146 --~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                        +...+.  ..++.+||+++.|++++++.|.+.
T Consensus       124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence              333331  268999999999999999999775

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.40  E-value=1.1e-06  Score=65.76  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=65.8

Q ss_pred             CCCcc-ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH
Q 028654           64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (206)
Q Consensus        64 ~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~  142 (206)
                      .|||. .........++.+|++++|+|+..+.+...  .++..+   ..     +.|+++|+||+|+.+.    ...+..
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-----~kp~iiVlNK~DL~~~----~~~~~~   72 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-----NKPRLLILNKSDLADP----EVTKKW   72 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-----CCCEEEEEEchhcCCH----HHHHHH
Confidence            56743 223445667889999999999987544322  111221   11     5689999999999642    111122


Q ss_pred             HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ..+....+ .+++.+|++++.|++++.+.+.+.+.+.
T Consensus        73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            22222323 6789999999999999999998887654

>PRK13796 GTPase YqeH; Provisional

Probab=98.39  E-value=6.3e-07  Score=69.19  Aligned_cols=55  Identities=24%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE   68 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~   68 (206)
                      .++.++|.+|+|||||+|+|.....      .....|++|.+.  ..+.+++   ...++||||-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~---~~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDD---GSFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCC---CcEEEECCCcc
Confidence            4789999999999999999985431      123344444433  3333333   23689999953

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.39  E-value=8.6e-07  Score=64.72  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|.+|+|||||+|+|.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            57899999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.38  E-value=7.1e-07  Score=68.25  Aligned_cols=22  Identities=41%  Similarity=0.736  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|++|+|||||+|+|.+..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7899999999999999998654

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.30  E-value=1.5e-06  Score=64.10  Aligned_cols=59  Identities=24%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ   71 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~   71 (206)
                      -.+++|.+|+|||||+|+|.....      ......+.-++.....+.+.+..   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            457889999999999999986321      11111111122223333342211   367999976543

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.30  E-value=4.1e-06  Score=58.34  Aligned_cols=115  Identities=13%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             EEEEeeCCCcccccccc---ccce---e---cCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           58 TLQIWDTAGQERFQSLG---VAFY---R---GADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        58 ~~~i~D~~G~~~~~~~~---~~~~---~---~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      .+.++|+|||-+.-...   ...+   +   -.-.++|++|..- -++...+...+..+..+...    .+|-|=|++|.
T Consensus        99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM  174 (273)
T KOG1534|consen   99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM  174 (273)
T ss_pred             CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence            46789999976543222   1111   1   1225566666532 22334445555555555444    67899999999


Q ss_pred             CCCCCCcce----------e-----------c------HHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          128 DVDGGNSRV----------V-----------S------EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       128 D~~~~~~~~----------~-----------~------~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      |+......+          .           +      ...+..+...++-+.|++....+.+.++.++..|-.++
T Consensus       175 DLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai  250 (273)
T KOG1534|consen  175 DLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI  250 (273)
T ss_pred             HHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence            987541100          0           0      00011122233445788888877888888877776654

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.9e-06  Score=65.52  Aligned_cols=158  Identities=17%  Similarity=0.138  Sum_probs=95.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (206)
                      ...++++++|...+||||+-..+.....                               ...+...-+.......  +.-
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~--FEt  154 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAY--FET  154 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEE--EEe
Confidence            4578999999999999998777654211                               0111111111111122  222


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHHHH-HH-HHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNL-NN-WREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~-~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ....+++.|.||+..|-..+..-...||+.++|+++...+   .|+.- +. -...+.+...     -...|+++||+|-
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMdd  229 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMDD  229 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEeccC
Confidence            2357889999999999998888889999999999985321   12211 00 0111222211     2358999999997


Q ss_pred             CCCCcceecHHHHH----HHHHHc-----CCCcEEEeeccCCCCHHHHHH
Q 028654          130 DGGNSRVVSEKKAK----AWCASK-----GNIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       130 ~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~~s~~~~~~i~~l~~  170 (206)
                      +..+-..+.+++..    .|....     ....|+++|..+|.++++..+
T Consensus       230 PtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  230 PTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             CccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            65433333344333    333321     246799999999999998765

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.27  E-value=3.6e-06  Score=59.31  Aligned_cols=90  Identities=17%  Similarity=0.128  Sum_probs=46.7

Q ss_pred             EEEEEeeCCCcccccc----ccccce--ecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ..+.++||+|......    .+..++  ...+-+++|++++... ....+..    +...+.       +-=+++||.|.
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~----~~~~~~-------~~~lIlTKlDe  152 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA----FYEAFG-------IDGLILTKLDE  152 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH----HHHHSS-------TCEEEEESTTS
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH----Hhhccc-------CceEEEEeecC
Confidence            4688999999433221    122211  2477899999988543 2222222    222221       23567999997


Q ss_pred             CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      ...      .-.+-.+....+ .|+-.++  +|.+++
T Consensus       153 t~~------~G~~l~~~~~~~-~Pi~~it--~Gq~V~  180 (196)
T PF00448_consen  153 TAR------LGALLSLAYESG-LPISYIT--TGQRVD  180 (196)
T ss_dssp             SST------THHHHHHHHHHT-SEEEEEE--SSSSTT
T ss_pred             CCC------cccceeHHHHhC-CCeEEEE--CCCChh
Confidence            543      223333444444 5666555  444443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.27  E-value=1.8e-06  Score=62.03  Aligned_cols=75  Identities=12%  Similarity=0.139  Sum_probs=51.5

Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      .++++.+|.+|+.+-+..|...+...-++|||+..++..       +-..+++-+..+.....+.-...+.+|+.+||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            367899999999998999999999999999999887421       1122333333333222222222567999999999


Q ss_pred             CC
Q 028654          129 VD  130 (206)
Q Consensus       129 ~~  130 (206)
                      +.
T Consensus       281 ll  282 (379)
T KOG0099|consen  281 LL  282 (379)
T ss_pred             HH
Confidence            74

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.24  E-value=1.8e-05  Score=63.24  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.|+++|++|+||||++..|..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999988764

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.22  E-value=2.2e-06  Score=67.00  Aligned_cols=54  Identities=26%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      .+.|++||-||+||||+||+|.+.... .+..|+.|..+....+  ..   .+.+.||||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l--s~---~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL--SP---SVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc--CC---CceecCCCC
Confidence            589999999999999999999987643 4555555555544433  32   567789999

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=1e-05  Score=63.45  Aligned_cols=119  Identities=17%  Similarity=0.200  Sum_probs=76.0

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCC------------C----CCcccccceeeEEEEEE--------------eC
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKF------------S----NQYKATIGADFLTKEVQ--------------FE   53 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~------------~----~~~~~~~~~~~~~~~~~--------------~~   53 (206)
                      .+.+..++.|+.+...|||||-..|..+..            .    ++.....+.......+.              -+
T Consensus        15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            445677889999999999999999875422            1    11222222222111111              12


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      +..+.+.++|.||+.+|.+....+++-.|++++|+|.-+.--.+.-.-+...+    ..    .+.-++++||.|..
T Consensus        95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~----~E----RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI----AE----RIKPVLVMNKMDRA  163 (842)
T ss_pred             CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH----Hh----hccceEEeehhhHH
Confidence            34577899999999999999999999999999999987532111111111111    11    44457889999954

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.19  E-value=5.5e-06  Score=62.00  Aligned_cols=25  Identities=32%  Similarity=0.551  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      ..++++|++|+|||||+|.|.+...
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~  186 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLD  186 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhh
Confidence            4689999999999999999987643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.16  E-value=6.6e-06  Score=55.35  Aligned_cols=58  Identities=22%  Similarity=0.201  Sum_probs=36.3

Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      .+.+.|+||+|....   ...++..+|-++++..++-.+....+ +. ..+          ...=++++||+|
T Consensus        91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~-k~-~~~----------~~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAI-KA-GIM----------EIADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHh-hh-hHh----------hhcCEEEEeCCC
Confidence            367899999985422   23477889999999888732222211 11 111          223589999998

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=8.9e-06  Score=70.41  Aligned_cols=113  Identities=22%  Similarity=0.287  Sum_probs=60.1

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC--CCcc-ccc-ceeeEEEEEEeCCeEEEEEEeeCCC----cc----ccccccccc--
Q 028654           12 IILGDSGVGKTSLMNQYVNRKFS--NQYK-ATI-GADFLTKEVQFEDRLFTLQIWDTAG----QE----RFQSLGVAF--   77 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~~~~~~--~~~~-~~~-~~~~~~~~~~~~~~~~~~~i~D~~G----~~----~~~~~~~~~--   77 (206)
                      +|||++|+||||++..-. ..|+  .... ... +........-+.+   .-.++||.|    ++    .....+..+  
T Consensus       129 ~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         129 MVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             EEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            689999999999986532 2222  1100 000 0001111122233   446789999    21    122233322  


Q ss_pred             -------eecCcEEEEEEECCCh-----hhHHH----HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           78 -------YRGADCCVLVYDVNVM-----KSFDN----LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        78 -------~~~~d~vi~v~d~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                             .+..|+||+.+|+++-     .....    +..-+.++......    ..||.+++||.|+.+.
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~----~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHA----RLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcc----CCceEEEEeccccccc
Confidence                   2458999999998751     11111    12222333333322    7899999999999864

>PRK00098 GTPase RsgA; Reviewed

Probab=98.13  E-value=6.6e-06  Score=61.92  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||+|+|.+..
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998754

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.11  E-value=2.9e-05  Score=59.79  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++++|++|+||||++..|...
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999998753

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.11  E-value=1.8e-05  Score=43.24  Aligned_cols=44  Identities=25%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             cCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           80 GADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      -.++++|++|++...  +.+.-..++.++...+.     +.|+++|+||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence            478999999999754  44555567777887776     789999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=98.10  E-value=1e-05  Score=57.34  Aligned_cols=70  Identities=11%  Similarity=0.058  Sum_probs=38.9

Q ss_pred             EEEEEeeCCCcccccccc------ccceecCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEe
Q 028654           57 FTLQIWDTAGQERFQSLG------VAFYRGADCCVLVYDVN------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG  124 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~------~~~~~~~d~vi~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~  124 (206)
                      ....++|+|||-++-...      ...+.+.+.-+.++...      ++.  ..+..++..+..+...    ..|-+=|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~--~~iS~lL~sl~tMl~m----elphVNvl  170 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPS--KFISSLLVSLATMLHM----ELPHVNVL  170 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChH--HHHHHHHHHHHHHHhh----cccchhhh
Confidence            356789999976543322      12233455444444433      333  3344444555444443    56778889


Q ss_pred             eCCCCCCC
Q 028654          125 NKTDVDGG  132 (206)
Q Consensus       125 nK~D~~~~  132 (206)
                      .|+|+...
T Consensus       171 SK~Dl~~~  178 (290)
T KOG1533|consen  171 SKADLLKK  178 (290)
T ss_pred             hHhHHHHh
Confidence            99997643

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.08  E-value=5.4e-05  Score=56.09  Aligned_cols=91  Identities=20%  Similarity=0.108  Sum_probs=63.5

Q ss_pred             ccceecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654           75 VAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      +-.+.+.|-+++++.+.+++- ...+.+++......       ++..+|++||+|+........  ++........+ ++
T Consensus        74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~-------gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g-y~  143 (301)
T COG1162          74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG-------GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG-YP  143 (301)
T ss_pred             CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc-------CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC-ee
Confidence            334456777788888877653 44456665554332       677888899999987633222  44555566666 89


Q ss_pred             EEEeeccCCCCHHHHHHHHHHH
Q 028654          154 YFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ++.+|++++.+++++.+.+...
T Consensus       144 v~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         144 VLFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             EEEecCcCcccHHHHHHHhcCC
Confidence            9999999999999998877653

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.07  E-value=5e-05  Score=52.53  Aligned_cols=66  Identities=24%  Similarity=0.129  Sum_probs=37.4

Q ss_pred             EEEEEeeCCCcccccc----ccccce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      ..+.++|+||......    ......  ...+.+++|+|+.....   ...+...+....      + ..-+|.||.|..
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~------~-~~~viltk~D~~  152 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL------G-ITGVILTKLDGD  152 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC------C-CCEEEEECCcCC
Confidence            4578899999643221    111111  24899999999865332   122333333222      2 256778999976


Q ss_pred             CC
Q 028654          131 GG  132 (206)
Q Consensus       131 ~~  132 (206)
                      ..
T Consensus       153 ~~  154 (173)
T cd03115         153 AR  154 (173)
T ss_pred             CC
Confidence            53

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.07  E-value=8.1e-06  Score=64.23  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .+..|+++|++|+||||++..|.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            35678999999999999988775

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=6.2e-05  Score=58.12  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|+++|++|+||||++..|..
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Confidence            46789999999999999999863

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.06  E-value=3.8e-05  Score=52.74  Aligned_cols=135  Identities=22%  Similarity=0.312  Sum_probs=62.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeC-CCc---------------------
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT-AGQ---------------------   67 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~---------------------   67 (206)
                      +|.+.|++|+|||||++.++..--.. ..+.  ..++...+.-.+...-+.+.|. .|.                     
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v--~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPV--GGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGE--EEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCcc--ceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68899999999999999987542110 0111  2233333334445555555555 331                     


Q ss_pred             -cccccccccce----ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC-CCCCCCcceecHHH
Q 028654           68 -ERFQSLGVAFY----RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT-DVDGGNSRVVSEKK  141 (206)
Q Consensus        68 -~~~~~~~~~~~----~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~-D~~~~~~~~~~~~~  141 (206)
                       +.+.......+    ..+|  ++++|--.+--+ ....|...+...+..    +.|++.++-+. +..          .
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl-~~~~F~~~v~~~l~s----~~~vi~vv~~~~~~~----------~  140 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKMEL-KSPGFREAVEKLLDS----NKPVIGVVHKRSDNP----------F  140 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTCC-C-CHHHHHHHHHHCT----TSEEEEE--SS--SC----------C
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhhh-cCHHHHHHHHHHHcC----CCcEEEEEecCCCcH----------H
Confidence             11111112222    2344  777775432111 113445555555442    66788777666 321          2


Q ss_pred             HHHHHHHcCCCcEEEeeccCCCCH
Q 028654          142 AKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus       142 ~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ++.+....+ ..++.++..+.+.+
T Consensus       141 l~~i~~~~~-~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  141 LEEIKRRPD-VKIFEVTEENRDAL  163 (168)
T ss_dssp             HHHHHTTTT-SEEEE--TTTCCCH
T ss_pred             HHHHHhCCC-cEEEEeChhHHhhH
Confidence            333334444 77777776655544

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=2.6e-05  Score=60.97  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++++|+.|+||||++..|.+.
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999987653

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.03  E-value=1e-05  Score=57.20  Aligned_cols=122  Identities=11%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCCh----------hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----------KSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  126 (206)
                      +.+.++|.+|+..-+..|...+.+.-.+++++..+..          ...+.-..++..+..+.+..   +.++|+++||
T Consensus       199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~---nssVIlFLNK  275 (359)
T KOG0085|consen  199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ---NSSVILFLNK  275 (359)
T ss_pred             heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc---CCceEEEech
Confidence            4566788888877777777777666666665554421          11122222334444333322   6789999999


Q ss_pred             CCCCCC--------------CcceecHHHHHHHHHH----cC-----CCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          127 TDVDGG--------------NSRVVSEKKAKAWCAS----KG-----NIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       127 ~D~~~~--------------~~~~~~~~~~~~~~~~----~~-----~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      .|+.+.              ...+.+.+..++|...    .+     .+--..+.|.+.+|+..+|..+.+.++...-
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            998542              1123333334443322    11     0123346677888999888888777765443

>PRK10867 signal recognition particle protein; Provisional

Probab=98.01  E-value=7.1e-05  Score=58.92  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=18.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 028654            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      +.-|+++|++|+||||++..|.
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA  121 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLA  121 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHH
Confidence            5678899999999999766554

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.99  E-value=0.00014  Score=55.14  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             EEEEEeeCCCccccccccccce--------ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      ....++++.|..+-......+.        -..++++.|+|+.+.....  ..+ ..+..+...      .=+||+||+|
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~--~~~-~~~~~Qi~~------AD~IvlnK~D  161 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM--NQF-TIAQSQVGY------ADRILLTKTD  161 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhc--ccc-HHHHHHHHh------CCEEEEeccc
Confidence            4567888999543333222221        1257899999997532211  111 111111111      2488999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcC-CCcEEEeeccCCCCHHHHH
Q 028654          129 VDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~l~  169 (206)
                      +...      .+.+....+..+ .++++.++ ........++
T Consensus       162 l~~~------~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        162 VAGE------AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             cCCH------HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            9863      134555444443 45555443 2333444444

>PRK13695 putative NTPase; Provisional

Probab=97.99  E-value=0.00033  Score=48.51  Aligned_cols=21  Identities=43%  Similarity=0.619  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|++.|++|+|||||+..+.+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999998654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.95  E-value=9.3e-05  Score=56.99  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=76.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEE---------------EEE--eC----------CeEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTK---------------EVQ--FE----------DRLF   57 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~---------------~~~--~~----------~~~~   57 (206)
                      .-.|+++||+|+||||-+-.|..+..-   .......+.+.+..               .+.  ++          -...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            456889999999999988887654320   11111111111110               000  00          1135


Q ss_pred             EEEEeeCCCccccccc----ccccee--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEeeCCCCC
Q 028654           58 TLQIWDTAGQERFQSL----GVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVD  130 (206)
Q Consensus        58 ~~~i~D~~G~~~~~~~----~~~~~~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~  130 (206)
                      .+.++||.|...+...    +..++.  ...-+.+|++++..  ..++...+..+    ..     .|+ =+++||.|-.
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f----~~-----~~i~~~I~TKlDET  351 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF----SL-----FPIDGLIFTKLDET  351 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh----cc-----CCcceeEEEccccc
Confidence            7899999995444332    222332  23455677777642  23343333333    32     232 4779999965


Q ss_pred             CCCcceecHHHHHHHHHHcCCCcEEEeeccC--CCCHHH-HHHHHHHHHhhcCC
Q 028654          131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKE--GFNVEA-AFECIAKNALKNEP  181 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~-l~~~i~~~~~~~~~  181 (206)
                      ..      .-.+-......+ .|+..++.-.  .+++.. --+++++.+.....
T Consensus       352 ~s------~G~~~s~~~e~~-~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~  398 (407)
T COG1419         352 TS------LGNLFSLMYETR-LPVSYVTNGQRVPEDIVVANPDYLVRRILGTFA  398 (407)
T ss_pred             Cc------hhHHHHHHHHhC-CCeEEEeCCCCCCchhhhcChHHHHHHHhcccc
Confidence            32      233333333433 5555444221  123332 23556666655443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.95  E-value=7.2e-05  Score=58.98  Aligned_cols=21  Identities=33%  Similarity=0.623  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++|++|+||||++..|..
T Consensus       223 ~i~~vGptGvGKTTt~~kLA~  243 (424)
T PRK05703        223 VVALVGPTGVGKTTTLAKLAA  243 (424)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999998877643

>TIGR00959 ffh signal recognition particle protein

Probab=97.94  E-value=0.00014  Score=57.29  Aligned_cols=86  Identities=23%  Similarity=0.104  Sum_probs=45.9

Q ss_pred             EEEEEeeCCCcccccc----cccc--ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           57 FTLQIWDTAGQERFQS----LGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~----~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      +.+.|+||||......    ....  ..-..+.+++|+|+...   +....+...+.....       ..=+|+||.|..
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~~  252 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDGD  252 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccCc
Confidence            5689999999432221    1111  12247888999998743   233333344432221       235779999954


Q ss_pred             CCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654          131 GGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      ..      .-.+.......+ .|+..++.
T Consensus       253 ~~------~G~~lsi~~~~~-~PI~fi~~  274 (428)
T TIGR00959       253 AR------GGAALSVRSVTG-KPIKFIGV  274 (428)
T ss_pred             cc------ccHHHHHHHHHC-cCEEEEeC
Confidence            22      112444444444 56555553

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.93  E-value=9.8e-05  Score=57.36  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|+++|++|+||||.+..+..
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~  196 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAA  196 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999988763

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.93  E-value=0.00039  Score=52.73  Aligned_cols=101  Identities=17%  Similarity=0.017  Sum_probs=53.9

Q ss_pred             EEEEEeeCCCcccccccccc--------ceecCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           57 FTLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      +...++.+.|-..-......        ..-..|+++-|+|+..-..... ...   .+..+..      ..=+||+||.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~---~~~~Qia------~AD~ivlNK~  155 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE---LAEDQLA------FADVIVLNKT  155 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH---HHHHHHH------hCcEEEEecc
Confidence            45677888882211111111        1124688999999986333221 212   2222221      1248999999


Q ss_pred             CCCCCCcceecHHHHHHHHHHc-CCCcEEEeeccCCCCHHHHHHH
Q 028654          128 DVDGGNSRVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFEC  171 (206)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~l~~~  171 (206)
                      |+..+.    ..+..+...+.. ..++++.++. ...+..+++..
T Consensus       156 Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~~  195 (323)
T COG0523         156 DLVDAE----ELEALEARLRKLNPRARIIETSY-GDVDLAELLDE  195 (323)
T ss_pred             cCCCHH----HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhcc
Confidence            999752    245555555544 3567777776 44444444443

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.92  E-value=3.2e-05  Score=53.76  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=40.8

Q ss_pred             EEEEEeeCCCcccccccc--cc---ceecCcEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           57 FTLQIWDTAGQERFQSLG--VA---FYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~--~~---~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      ....|+.+.|...-....  ..   ..-..+.++.|+|+........+.. +..++    .      ..=++|+||+|+.
T Consensus        85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi----~------~ADvIvlnK~D~~  154 (178)
T PF02492_consen   85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI----A------FADVIVLNKIDLV  154 (178)
T ss_dssp             -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH----C------T-SEEEEE-GGGH
T ss_pred             cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc----h------hcCEEEEeccccC
Confidence            466778888833322220  00   0123678999999976433333322 22222    2      2348899999997


Q ss_pred             CCCcceecHHHHHHHHHHc
Q 028654          131 GGNSRVVSEKKAKAWCASK  149 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~  149 (206)
                      +..   ...+..+...+..
T Consensus       155 ~~~---~~i~~~~~~ir~l  170 (178)
T PF02492_consen  155 SDE---QKIERVREMIREL  170 (178)
T ss_dssp             HHH-----HHHHHHHHHHH
T ss_pred             Chh---hHHHHHHHHHHHH
Confidence            641   2224455544443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.90  E-value=0.00011  Score=52.80  Aligned_cols=115  Identities=21%  Similarity=0.326  Sum_probs=71.3

Q ss_pred             eEEEEEcCCCC--CHHHHHHHHhcCCCCCCcccccceeeEEEEEEe--CCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            9 LKVIILGDSGV--GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF--EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         9 ~~i~viG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ..++|+|.+|+  ||.+|+++|....+.....+.....+..+++..  ....+.+.+.-.. ++.+.... .......++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccCCc-ccccceeeE
Confidence            46789999998  999999999988887655555545555444321  1122333332211 12222111 122345688


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGG  132 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~  132 (206)
                      +++||.+....+..++.|+.....       ... ..+.++||.|.++.
T Consensus        83 vmvfdlse~s~l~alqdwl~htdi-------nsfdillcignkvdrvph  124 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDI-------NSFDILLCIGNKVDRVPH  124 (418)
T ss_pred             EEEEeccchhhhHHHHhhcccccc-------ccchhheecccccccccc
Confidence            999999998888888888764311       122 24678999998764

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.90  E-value=1.2e-05  Score=61.19  Aligned_cols=57  Identities=25%  Similarity=0.409  Sum_probs=40.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ...++++|+|-|++||||+||+|..+..- ....++.|.  ....+..+.   .+.|+|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~--smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTR--SMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchh--hhhheeccC---CceeccCCce
Confidence            45789999999999999999999987653 333444433  333333333   6788999993

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.90  E-value=0.00016  Score=60.46  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --|+++|+.|+||||++..|...
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            35789999999999999998753

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.89  E-value=2.1e-05  Score=58.04  Aligned_cols=59  Identities=22%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC------CCcccccceeeEEEEEEeCCeEEEEEEeeCCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG   66 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G   66 (206)
                      ...++++|+|.||+|||||+|++......      ....++.+..+... +.+..+. .+.++||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCC
Confidence            45789999999999999999998653322      23334443333221 2333322 467889999

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.87  E-value=9.6e-05  Score=49.20  Aligned_cols=106  Identities=19%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCC
Q 028654           13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV   92 (206)
Q Consensus        13 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~   92 (206)
                      .-|..|+||||+.-.+...-.. ......-.+.   ........+.+.++|+|+..  .......+..+|.++++.+.+.
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~---D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDA---DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEEC---CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence            4478899999997665432110 0000000000   00001111678999999843  2333567888999999999874


Q ss_pred             hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           93 MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                       .++..+...+..+....     ...++.+|+|+.+..
T Consensus        79 -~s~~~~~~~l~~l~~~~-----~~~~~~lVvN~~~~~  110 (139)
T cd02038          79 -TSITDAYALIKKLAKQL-----RVLNFRVVVNRAESP  110 (139)
T ss_pred             -hHHHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCH
Confidence             33444444444443322     144688999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.85  E-value=0.00017  Score=57.45  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      --++++|+.|+||||++..|..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            3578999999999999999875

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=7.5e-05  Score=57.40  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++|+.|+||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999988764

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.76  E-value=2.5e-05  Score=50.57  Aligned_cols=22  Identities=36%  Similarity=0.659  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999765

...

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.76  E-value=0.0001  Score=52.51  Aligned_cols=48  Identities=21%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCC-CcEEEEeeCCCCC
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-FPFVVLGNKTDVD  130 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pviiv~nK~D~~  130 (206)
                      +.....+|.+|+|+|++-. ++....+. ..+...   .   + .++.+|+||.|-.
T Consensus       150 Rg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~e---l---g~k~i~~V~NKv~e~  198 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEE---L---GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHH---h---CCceEEEEEeeccch
Confidence            3456789999999999853 33333222 222222   2   4 5899999999843

>PRK08118 topology modulation protein; Reviewed

Probab=97.75  E-value=2.6e-05  Score=53.59  Aligned_cols=22  Identities=36%  Similarity=0.733  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998765

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.75  E-value=0.00012  Score=46.06  Aligned_cols=82  Identities=17%  Similarity=0.171  Sum_probs=48.4

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           11 VIILG-DSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        11 i~viG-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      |.+.| ..|+||||+...+...-.. ...+       ...+..+. .+.+.++|+|+.....  ....+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence            45666 5699999998776543211 0011       11111111 1678899999964322  3366778999999998


Q ss_pred             CCChhhHHHHHHHHH
Q 028654           90 VNVMKSFDNLNNWRE  104 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~  104 (206)
                      .+. .+...+..++.
T Consensus        71 ~~~-~s~~~~~~~~~   84 (104)
T cd02042          71 PSP-LDLDGLEKLLE   84 (104)
T ss_pred             CCH-HHHHHHHHHHH
Confidence            863 34455555544

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.70  E-value=4.7e-05  Score=42.71  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      .++.|+.|+|||||+.++.-.
T Consensus        26 tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999997643

>PRK07261 topology modulation protein; Provisional

Probab=97.70  E-value=3.5e-05  Score=53.20  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+|+|++|||||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7899999999999999998654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.68  E-value=0.00033  Score=43.09  Aligned_cols=69  Identities=20%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc-cccceecCcEEEEEEE
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD   89 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~vi~v~d   89 (206)
                      +++.|..|+||||+...+...-...      +  +....  ++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g--~~v~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR------G--KRVLL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC------C--CeEEE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            5788999999999998876543110      0  01111  11    7788999985533221 1445667899999998


Q ss_pred             CCCh
Q 028654           90 VNVM   93 (206)
Q Consensus        90 ~~~~   93 (206)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            8743

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.68  E-value=3.4e-05  Score=53.50  Aligned_cols=22  Identities=32%  Similarity=0.782  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+|+|+|||||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999887

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.65  E-value=0.0018  Score=49.78  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      .++.|.-|||||||++.++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            467799999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.65  E-value=4.3e-05  Score=54.93  Aligned_cols=22  Identities=41%  Similarity=0.643  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|++|||||||++.+.+-.
T Consensus        32 vsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999988754

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.64  E-value=0.00065  Score=50.29  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -+++++|++|+||||++..+..
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~   97 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            5899999999999999887754

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.63  E-value=4.8e-05  Score=50.77  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      |+++|++|||||||+..+....
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
Confidence            6899999999999999997543

...

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.62  E-value=5e-05  Score=54.25  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||+|.+.+-+
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            36899999999999999987654

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.61  E-value=2.3e-05  Score=59.70  Aligned_cols=82  Identities=17%  Similarity=0.121  Sum_probs=49.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc--ccccccccceecC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--RFQSLGVAFYRGA   81 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~~~~~~~~~   81 (206)
                      ....+.|.+||.|++||||+||.|-.+.+. ..+.++.+.-....  ..   ...+-++|+||..  .........+   
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI--tL---mkrIfLIDcPGvVyps~dset~ivL---  375 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI--TL---MKRIFLIDCPGVVYPSSDSETDIVL---  375 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH--HH---HhceeEecCCCccCCCCCchHHHHh---
Confidence            345789999999999999999999887654 33444433211111  11   1356788999932  1122233332   


Q ss_pred             cEEEEEEECCChh
Q 028654           82 DCCVLVYDVNVMK   94 (206)
Q Consensus        82 d~vi~v~d~~~~~   94 (206)
                      -+++=|=.+.+++
T Consensus       376 kGvVRVenv~~pe  388 (572)
T KOG2423|consen  376 KGVVRVENVKNPE  388 (572)
T ss_pred             hceeeeeecCCHH
Confidence            3556666666654

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.59  E-value=0.00025  Score=55.39  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-++++|++||||||++..|..
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999988864

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.56  E-value=7.2e-05  Score=52.64  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++||+|||||||++.+.+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            57899999999999999886543

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.55  E-value=5e-05  Score=52.16  Aligned_cols=24  Identities=33%  Similarity=0.678  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .=+++.||+|+|||||+++|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            346788999999999999998876

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.54  E-value=9.2e-05  Score=42.89  Aligned_cols=21  Identities=29%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.53  E-value=0.0014  Score=53.02  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      +++.||+||||||.++.|....
T Consensus        48 LlLtGP~G~GKtttv~~La~el   69 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKEL   69 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            4567999999999999988653

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.50  E-value=6e-05  Score=51.58  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            6999999999999999999865

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.49  E-value=0.00084  Score=44.47  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ...+++.|++|+|||+|++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999998764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.48  E-value=0.00045  Score=45.34  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -|++.|+.|+|||||++.+...-
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            57899999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK14530 adenylate kinase; Provisional

Probab=97.48  E-value=0.00011  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.533  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|++||||||+.+.|...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999988653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.46  E-value=0.00014  Score=51.93  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|+|.|++|||||||++.|.+.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999998764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.46  E-value=0.00011  Score=48.60  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            57899999999999999987764

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.44  E-value=0.00076  Score=50.25  Aligned_cols=104  Identities=13%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCc-------------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------------------   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------------------   67 (206)
                      ...+++++|++|.|||+++++|....... ..... .            .+.+..+.+|..                   
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~~-~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~  125 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SDEDA-E------------RIPVVYVQMPPEPDERRFYSAILEALGAPYR  125 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHCCCC-CCCCC-c------------cccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence            34678999999999999999998765322 11111 0            112333344431                   


Q ss_pred             -----cccccccccceecCcEEEEEEECCCh---hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           68 -----ERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        68 -----~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                           ..........++...+=++++|--+.   .+...-..++..++...+..   ++|++.|||+-
T Consensus       126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~~  190 (302)
T PF05621_consen  126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTRE  190 (302)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccHH
Confidence                 11111223445667788999996431   22333344555555443333   78999998753

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.43  E-value=3.7e-05  Score=63.50  Aligned_cols=102  Identities=12%  Similarity=0.071  Sum_probs=58.7

Q ss_pred             EEEEEeeCCC-------------ccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654           57 FTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (206)
Q Consensus        57 ~~~~i~D~~G-------------~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  123 (206)
                      ..++++|+||             ..+...+...++...+.+|+.+.+.+.+-  ....++...    ...++.+..++.|
T Consensus       132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~--ats~alkia----revDp~g~RTigv  205 (657)
T KOG0446|consen  132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDI--ATSPALVVA----REVDPGGSRTLEV  205 (657)
T ss_pred             chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhh--hcCHHHHHH----HhhCCCccchhHH
Confidence            4678999999             22344566778888999999888765211  112333333    2333447789999


Q ss_pred             eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +||.|+.+........-....+   ....+++.+.......++.
T Consensus       206 itK~DlmdkGt~~~~~L~g~~~---~l~~g~v~vvnR~q~di~~  246 (657)
T KOG0446|consen  206 ITKFDFMDKGTNAVTRLVGRPI---TLKVGYVGVVNRSQSIIDF  246 (657)
T ss_pred             hhhHHhhhcCCcceeeecCCcc---ccccceeeeeccchhhhhh
Confidence            9999998754433332111111   1123566666665555443

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.43  E-value=0.00013  Score=52.80  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++++|+|++|||||+|+..++..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999888754

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK06217 hypothetical protein; Validated

Probab=97.42  E-value=0.00013  Score=50.99  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|+|.+|||||||...|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999865

>PF05729 NACHT: NACHT domain

Probab=97.41  E-value=0.00029  Score=48.05  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++|.|++|+||||++..+...-
T Consensus         3 l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6789999999999999987643

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.40  E-value=0.00015  Score=48.10  Aligned_cols=21  Identities=33%  Similarity=0.793  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++|++|||||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            578999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.38  E-value=0.00017  Score=45.39  Aligned_cols=20  Identities=50%  Similarity=0.810  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028654           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      .++++|++|||||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57899999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.38  E-value=0.00017  Score=49.52  Aligned_cols=21  Identities=48%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++|++|+|||||+|-+.+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            678999999999999998866

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.36  E-value=0.00017  Score=50.51  Aligned_cols=23  Identities=35%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|||||||++.|.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999997653

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.36  E-value=0.00018  Score=50.39  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .=|+++|++|||||||++.|....
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            347899999999999999998754

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.36  E-value=0.0005  Score=52.39  Aligned_cols=94  Identities=19%  Similarity=0.080  Sum_probs=61.5

Q ss_pred             eCCCc-cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH
Q 028654           63 DTAGQ-ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK  141 (206)
Q Consensus        63 D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~  141 (206)
                      +.||+ ..+.......+..+|+++.++|+.++.+...     ..+.....     +.+.++|+||.|+.+.   ....+-
T Consensus        16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-----~k~~i~vlNK~DL~~~---~~~~~W   82 (322)
T COG1161          16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-----EKPKLLVLNKADLAPK---EVTKKW   82 (322)
T ss_pred             CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-----cCCcEEEEehhhcCCH---HHHHHH
Confidence            45774 4556667778899999999999998765433     12222222     4567999999999874   223333


Q ss_pred             HHHHHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654          142 AKAWCASKGNIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       142 ~~~~~~~~~~~~~~~~s~~~~~~i~~l~~  170 (206)
                      .+.+.... ....+.+++..+.+...+..
T Consensus        83 ~~~~~~~~-~~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          83 KKYFKKEE-GIKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HHHHHhcC-CCccEEEEeecccCccchHH
Confidence            33333333 36678888888877776664

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.36  E-value=0.00022  Score=49.07  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+.++|++|||||||+.++...
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHH
Confidence            35789999999999999999865

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.36  E-value=0.00017  Score=47.09  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998765

...

>TIGR00235 udk uridine kinase

Probab=97.36  E-value=0.00021  Score=50.91  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...-|+++|++|||||||++.+.+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999999764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.35  E-value=0.00021  Score=47.05  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS   34 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~   34 (206)
                      ..++++|++|+||||++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK03839 putative kinase; Provisional

Probab=97.35  E-value=0.00017  Score=50.23  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+++|++||||||+...|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998765

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.34  E-value=0.00072  Score=43.75  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      --|++-|+-|+|||||++.+...-
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHc
Confidence            357888999999999999988654

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.33  E-value=0.00019  Score=49.92  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08233 hypothetical protein; Provisional

Probab=97.33  E-value=0.00022  Score=49.58  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|+|.|.+|||||||.+.|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            356788999999999999999764

>PRK14531 adenylate kinase; Provisional

Probab=97.33  E-value=0.00021  Score=49.96  Aligned_cols=24  Identities=21%  Similarity=0.415  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+|+++|+|||||||+...+...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999988654

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.33  E-value=0.0002  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999987753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.32  E-value=0.00084  Score=42.43  Aligned_cols=100  Identities=15%  Similarity=0.100  Sum_probs=53.9

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh
Q 028654           15 GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK   94 (206)
Q Consensus        15 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~   94 (206)
                      +..|+||||+.-.|...-.........     ......... ..+.++|+|+....  .....+..+|.++++.+.+. .
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~-----l~d~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVL-----LVDLDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-P   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEE-----EEECCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-H
Confidence            567899999876654321111000110     000000000 17789999995432  23456678999999998764 3


Q ss_pred             hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654           95 SFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (206)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  126 (206)
                      +...+..+...+......   +...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~---~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYS---LPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCC---CcCceEEEecC
Confidence            445555555555443211   12357777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.31  E-value=0.0002  Score=50.68  Aligned_cols=21  Identities=33%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998765

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.31  E-value=0.0002  Score=54.33  Aligned_cols=21  Identities=38%  Similarity=0.706  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++||+|||||||++.+.+-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999874

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.30  E-value=0.0012  Score=45.55  Aligned_cols=44  Identities=23%  Similarity=0.138  Sum_probs=27.3

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      |++++|+|+.++.+... ..+...+.  ...   .+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~---~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL--QAG---GNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH--hcc---CCCCEEEEEehhhcCC
Confidence            78999999987533221 12222211  111   1579999999999975

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.29  E-value=0.00023  Score=49.46  Aligned_cols=23  Identities=35%  Similarity=0.677  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -|+++|++|||||||++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            47899999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.28  E-value=0.00026  Score=49.58  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|++|||||||++.+.+..
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999988753

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.28  E-value=0.00024  Score=51.88  Aligned_cols=20  Identities=35%  Similarity=0.574  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      ++++||.|||||||++.+.+
T Consensus        31 ~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          31 TGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            57899999999999999987

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.27  E-value=0.00043  Score=49.31  Aligned_cols=25  Identities=40%  Similarity=0.598  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...-|+|+|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3456788999999999999999754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.26  E-value=0.00029  Score=48.79  Aligned_cols=21  Identities=38%  Similarity=0.654  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028654            9 LKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~   29 (206)
                      -.++++|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            367899999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.00028  Score=53.89  Aligned_cols=43  Identities=19%  Similarity=0.194  Sum_probs=26.9

Q ss_pred             eEEEEEEeeCCCccccc----ccccc--ceecCcEEEEEEECCChhhHH
Q 028654           55 RLFTLQIWDTAGQERFQ----SLGVA--FYRGADCCVLVYDVNVMKSFD   97 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~----~~~~~--~~~~~d~vi~v~d~~~~~~~~   97 (206)
                      ..+.+.|+||.|.....    ..+..  -.-+.|-+|+|.|++-...-.
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae  230 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE  230 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH
Confidence            35789999999933211    11111  123589999999998654433

>PRK13949 shikimate kinase; Provisional

Probab=97.26  E-value=0.00028  Score=48.60  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+++|++||||||+...|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988754

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0015  Score=49.28  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.-|.++|..|+|||||++.|..+.
T Consensus       188 f~VIgvlG~QgsGKStllslLaans  212 (491)
T KOG4181|consen  188 FTVIGVLGGQGSGKSTLLSLLAANS  212 (491)
T ss_pred             eeEEEeecCCCccHHHHHHHHhccC
Confidence            3457899999999999999988764

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.26  E-value=0.00028  Score=46.94  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .|+|+|+.|||||||+..|.+.-
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999987653

>PRK10646 ADP-binding protein; Provisional

Probab=97.25  E-value=0.0019  Score=43.40  Aligned_cols=24  Identities=25%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      -|++-|.-|+|||||++.+...-.
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999987643

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.25  E-value=0.00028  Score=51.02  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+.+|+|+|+|||||||+...|...
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999998654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.25  E-value=0.00027  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            67899999999999999988754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.25  E-value=0.00026  Score=50.09  Aligned_cols=22  Identities=23%  Similarity=0.546  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      |+++|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999887653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.00023  Score=50.08  Aligned_cols=20  Identities=30%  Similarity=0.586  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      .+++||+|||||||++.|-.
T Consensus        36 TAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            47999999999999988743

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.24  E-value=0.00028  Score=49.40  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.24  E-value=0.00046  Score=53.33  Aligned_cols=24  Identities=42%  Similarity=0.729  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -.++++|.+|+|||||+|.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            368999999999999999998754

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.22  E-value=0.00026  Score=50.90  Aligned_cols=21  Identities=24%  Similarity=0.272  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            678999999999999998764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.0003  Score=48.93  Aligned_cols=21  Identities=48%  Similarity=0.775  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|||||||+|.+.+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            367899999999999998865

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.22  E-value=0.0003  Score=50.21  Aligned_cols=21  Identities=38%  Similarity=0.653  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            368999999999999999877

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.20  E-value=0.004  Score=43.26  Aligned_cols=85  Identities=24%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  134 (206)
                      ..+.+.++|||+....  .....+..+|.+++++..+. .+...+..+...+...       +.|+.+|+||.|...   
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~-------~~~~~vV~N~~~~~~---  157 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF-------GIPVGVVINKYDLND---  157 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc-------CCCEEEEEeCCCCCc---
Confidence            3568899999975322  33455678999999999874 3455555555544432       457889999998643   


Q ss_pred             ceecHHHHHHHHHHcCCCcEE
Q 028654          135 RVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~  155 (206)
                        ...++..++.+..+ .+++
T Consensus       158 --~~~~~~~~~~~~~~-~~vl  175 (179)
T cd03110         158 --EIAEEIEDYCEEEG-IPIL  175 (179)
T ss_pred             --chHHHHHHHHHHcC-CCeE
Confidence              23445566666655 4443

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.19  E-value=0.0003  Score=46.53  Aligned_cols=26  Identities=23%  Similarity=0.546  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +...+|+|.|.||+|||||..++...
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence            55689999999999999999998743

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.19  E-value=0.00036  Score=50.11  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            57899999999999999998763

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.19  E-value=0.00059  Score=52.99  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .++..|+++|-.||||||.+-.|.
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA  121 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLA  121 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHH
Confidence            456789999999999999887764

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.19  E-value=0.00043  Score=47.86  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+++|++|+|||||...+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            37999999999999999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.19  E-value=0.00037  Score=49.78  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.19  E-value=0.00033  Score=49.78  Aligned_cols=23  Identities=35%  Similarity=0.725  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --|+++|++|||||||++.+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		8e-81
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-80
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-79
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-79
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-64
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		4e-52
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-51
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		3e-51
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-51
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-31
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-31
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		8e-31
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-30
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-30
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-30
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-30
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-30
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-30
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-30
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-30
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-30
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		4e-30
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-30
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-30
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-30
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-30
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-29
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-29
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-29
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-29
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-29
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-29
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-29
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-29
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		4e-29
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		4e-29
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-29
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		4e-29
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		4e-29
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-29
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-29
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-29
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-29
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		6e-29
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		6e-29
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		7e-29
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-29
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-28
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-28
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-28
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-28
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		4e-28
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		5e-28
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		5e-28
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-28
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-28
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-28
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		6e-28
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-28
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-28
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		7e-28
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-28
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-27
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-27
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-27
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-27
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-27
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-27
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-27
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-27
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-27
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		5e-27
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-27
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		1e-26
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-26
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-26
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-26
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-25
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-25
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-25
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-25
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-25
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-25
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-25
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		9e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-24
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-24
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-24
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-24
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-24
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-24
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		8e-24
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		9e-24
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-23
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-23
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-22
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-22
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-21
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-21
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-20
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-20
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-20
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		4e-20
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-20
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-20
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		7e-20
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-20
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-20
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		9e-20
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-19
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-19
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-19
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-19
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-19
1byu_A	216	Canine Gdp-Ran Length = 216		2e-19
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-19
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		4e-19
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-19
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-19
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		6e-19
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		6e-19
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-18
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-18
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		4e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		6e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		6e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-18
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		8e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		9e-18
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-17
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-16
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		6e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		7e-16
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		8e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		2e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		2e-15
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-15
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-15
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-15
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		2e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		3e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		3e-15
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-15
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		4e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-15
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		4e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		5e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		5e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-15
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-15
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-15
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		8e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		8e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-15
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		9e-15
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-14
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-14
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-14
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-14
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-14
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-13
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		7e-13
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-12
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-12
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		5e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		5e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		5e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		6e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		7e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		9e-12
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		9e-12
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-11
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		6e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		7e-11
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		8e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-11
1mh1_A	186	Small G-Protein Length = 186		9e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-10
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-10
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-10
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-10
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-10
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-10
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-10
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-10
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-10
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-10
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		4e-10
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		4e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		6e-10
2kb0_A	178	Cdc42(T35a) Length = 178		8e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		9e-10
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-09
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-09
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-09
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-09
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-09
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		8e-09
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		3e-08
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-08
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		8e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		8e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-08
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-07
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-07
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-07
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-07
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-07
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		5e-07
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		5e-07
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-07
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		5e-07
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		8e-07
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		9e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		9e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-05
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		4e-05
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		7e-05
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		8e-05
3qq5_A	423	Crystal Structure Of The [fefe]-Hydrogenase Maturat		8e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		4e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		4e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		5e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		5e-04
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		5e-04
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		5e-04
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		5e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		7e-04
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		7e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		8e-04

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  296 bits (757), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 170/210 (80%), Gaps = 7/210 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEEDY--LPDTIDVGGGQQQRSSG--CEC 206
            + E Y   P+ I +   ++ ++S   C C
Sbjct: 178 TEVELYNEFPEPIKLDKNERAKASAESCSC 207

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  293 bits (751), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/208 (68%), Positives = 167/208 (80%), Gaps = 5/208 (2%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D +   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDFE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEEDY--LPDTIDVGGGQQQRSSGCEC 206
            + E Y   P+ I +    + ++S   C
Sbjct: 178 TEVELYNEFPEPIKLDKNDRAKASAESC 205

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  292 bits (747), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 143/210 (68%), Positives = 168/210 (80%), Gaps = 7/210 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAG ERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEEDY--LPDTIDVGGGQQQRSSG--CEC 206
            + E Y   P+ I +    + ++S   C C
Sbjct: 178 TEVELYNEFPEPIKLDKNDRAKASAESCSC 207

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  291 bits (745), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 159/186 (85%), Gaps = 3/186 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEEDY 186
            + E Y
Sbjct: 178 TEVELY 183

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  241 bits (614), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 145/179 (81%), Gaps = 2/179 (1%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M+SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV    SF+N+ +WR+EFL+ A+ + PE FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           FV+LGNK D +  + ++VSEK A+    S G+IP F TSAK   NV+ AFE IA++AL+
Sbjct: 121 FVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/183 (53%), Positives = 127/183 (69%), Gaps = 3/183 (1%)
Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            S + +LLKVI+LGD GVGK+SLMN+YV  KF +Q   TIG +FL ++++ + R  TLQI
Sbjct: 1   GSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAGQERF+SL   FYRGADCC+L + V+  +SF+NL NW++EF+  A   DPE+FPFV
Sbjct: 61  WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           VLGNK D +    R V+ ++A+ WC   G+ PY ETSAK+  NV  AFE   +  L  E 
Sbjct: 121 VLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEE 177
Query: 182 QEE 184
           Q E
Sbjct: 178 QLE 180

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  198 bits (504), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 123/173 (71%), Gaps = 3/173 (1%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LGNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           D+   + R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L  E
Sbjct: 127 DI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K+I+LGD GVGK+SLMN+YV  KF +Q   TIG +FL K+++ +    T+QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LGNKT
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+     R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L
Sbjct: 131 DI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  196 bits (499), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LGNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+   + R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L
Sbjct: 129 DI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/174 (40%), Positives = 104/174 (59%), Gaps = 7/174 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   ++F     W +E   QASPS        + GNK D
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKAD 124
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           +   N R+V  ++A+A+ A   ++ + ETSAK   NV   F  IAK   K+EPQ
Sbjct: 125 L--ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/199 (39%), Positives = 117/199 (58%), Gaps = 18/199 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 143
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE A E +    +
Sbjct: 144 --IVLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 178 KNEPQ--EEDYLPDTIDVG 194
           K   Q  E+  +PDT++ G
Sbjct: 199 KRMEQCVEKTQIPDTVNGG 217

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  +++ Y +TIG DF  + +  E++   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV    SFDN+  W +E    A     EN   +++GNK 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+   + RVV+  + +    S G I + ETSAK  +NVE AF  +A
Sbjct: 125 DL--VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHTMA 167

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    EN   +++GNK+
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE AF  +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +S+ N+  W +E    AS    EN   +++GNK+
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE AF  +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 7/175 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK--- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           ++LGNK DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A++
Sbjct: 117 MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 168

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF SL   +YRG+   V+VYD+    SF  L  W +E         PEN    + GNK D
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCD 139
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           +   + R V  K AK +  S G I   ETSAK   N+E  F+ I++     +P E
Sbjct: 140 LS--DIREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLDPHE 191

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 141 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 183

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS +D E    ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           DV+  + R VS+++ +      G I + ETSAK   NVE AF  +A++
Sbjct: 122 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 166

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  127 bits (319), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK  L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 135
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 136 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 177

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 122/216 (56%), Gaps = 23/216 (10%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +    +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 KNEPQ--EEDYLPDTIDVGG-----GQQQRSSGCEC 206
           K   +  E+  +PDT++ G      G++     C C
Sbjct: 185 KRMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  126 bits (317), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 148
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F   A
Sbjct: 149 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXTXA 191

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK D+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 116
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
                +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 117 --TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 157

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K N+ + ETSA +  NVE AF+ I
Sbjct: 121 DL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNI 162

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 115/196 (58%), Gaps = 18/196 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +    +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 KNEPQ--EEDYLPDTI 191
           K   +  E+  +PDT+
Sbjct: 185 KRMEKCVEKTQVPDTV 200

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 109/188 (57%), Gaps = 16/188 (8%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLF 57
           L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +            +  
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +  + A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V+ GNK+D++  + R V E++A+   A K  IPYFETSA  G N+  A E +    +
Sbjct: 130 --IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 KNEPQEED 185
           K   +  D
Sbjct: 185 KRMERSVD 192

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 115/199 (57%), Gaps = 18/199 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +     
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIX 184
Query: 178 KNEPQ--EEDYLPDTIDVG 194
           K   +  E+  +PDT++ G
Sbjct: 185 KRXEKCVEKTQVPDTVNGG 203

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++   +YRG    ++VYDV   +SF N+  W  E        + ++   
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-----NQNCDDVCR 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +++GNK   D    +VV  + A  +    G I  FETSAKE  NVE  F CI +  L+
Sbjct: 117 ILVGNKN--DDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLR 171

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 107/166 (64%), Gaps = 8/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F TK +Q ++ ++   QIWDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   +LVYD+    SF+N+  W +E    A      N   +++GNK
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS----NIVILLVGNK 122
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           +D+   + RV+++  A  + A K  + + ETSA E  NVE AF  +
Sbjct: 123 SDLK--HLRVINDNDATQY-AKKEKLAFIETSALEATNVELAFHQL 165

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++G K 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGIKC 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           D+     +VV    AK +  S G IP+ ETSAK   NVE +F  +A
Sbjct: 124 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  124 bits (310), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 124 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 165

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  123 bits (309), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 119
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK   NV   F  IAK
Sbjct: 120 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 162

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  123 bits (308), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK+
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 127 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N    ++GNK+
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 111/206 (53%), Gaps = 19/206 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTD 129
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A      E  ++
Sbjct: 130 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 182
Query: 185 DYLPDTIDVGGGQQQR----SSGCEC 206
               D ID+   + Q       GC C
Sbjct: 183 RSREDMIDIKLEKPQEQPVSEGGCSC 208

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +  R   L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + V  + +   LQ
Sbjct: 14  LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQE F+S+  ++YRGA   +LVYD+   ++F++L +W E+    A      N   
Sbjct: 74  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVI 129
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK+D++  + R V  ++ +A+    G I + ETSAK   NVE AF   AK   +  
Sbjct: 130 MLIGNKSDLE--SRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKI 186
Query: 181 PQ 182
            Q
Sbjct: 187 QQ 188

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 14/213 (6%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +  +    
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK---- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK-- 178
           +++GNK D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+   +  
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 179 -----NEPQEEDYLPDTIDVGGGQQQRSSGCEC 206
                NE  ++      +++ G     + GC C
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A      E  ++
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 175
Query: 185 DYLPDTIDV 193
               D ID+
Sbjct: 176 RSREDMIDI 184

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTD 132
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A      E  ++
Sbjct: 133 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQD 185
Query: 185 DYLPDTIDV 193
               D ID+
Sbjct: 186 RSREDMIDI 194

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK   NV   F  IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++           +   +++GNKTD
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTD 117
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 118 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 159

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TI A FLT+ V  +D     +IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+    +F    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V  ++A+A+ A   ++ + ETSAK   NV   F  IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V ++ +            
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAG ERF+SL  AF+R A   +L +D+   +SF N+ NW  +    A   +P+ 
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE + E +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R+ SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK
Sbjct: 122 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 164

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 7/183 (3%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +  +    
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK---- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+   ++ 
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 PQE 183
            Q+
Sbjct: 174 SQQ 176

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  120 bits (300), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S++ ++V   F      TIGA F+TK VQ+++ L    IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V E+ AK +  S   I + ETSAK   N+   F  I++
Sbjct: 122 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+    SF   + W ++   +       +   +++GNKTD
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTD 130
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +   + R VS    E+KAK       N+ + ETSAK G+NV+  F  +A
Sbjct: 131 L--SDKRQVSTEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 172

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  120 bits (300), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+SL  ++ R +   V+VYD+  + SF   + W ++           +   +++GNKTD
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKTD 118
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +       + E + +   A + ++ + ETSAK G+NV+  F  +A   L+
Sbjct: 119 LADKRQITIEEGEQR---AKELSVMFIETSAKTGYNVKQLFRRVASALLE 165

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + S    L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + +  + +   LQ
Sbjct: 3   LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQE F+S+  ++YRGA   +LVYD+    +F++L  W E+    A      N   
Sbjct: 63  IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED----ARQHSNSNMVI 118
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +++GNK+D++  + R V +++ +A+    G I + ETSAK   NVE AF   AK
Sbjct: 119 MLIGNKSDLE--SRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAK 169

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      PS        + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V E+ AK +  S   I + ETSAK   N+   F  I++
Sbjct: 123 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 8/167 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  A+YR A   +L+YDV    SFDN+  W    L +       +   ++LGNK 
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW----LTEIHEYAQHDVALMLLGNK- 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            VD  + RVV  +  +      G +P+ ETSAK G NV+ AF  IAK
Sbjct: 126 -VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAK 170

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 111/191 (58%), Gaps = 13/191 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 20  IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +   +    +D      V  GNK+
Sbjct: 80  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT--VNEHANDEAQLLLV--GNKS 135
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYL 187
           D++   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK  L  E  + + L
Sbjct: 136 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK--LIQEKIDSNKL 189
Query: 188 PDTIDVGGGQQ 198
              + VG G++
Sbjct: 190 ---VGVGNGKE 197

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 3   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +   +    +D      V  GNK+
Sbjct: 63  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQLLLV--GNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 119 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 105/164 (64%), Gaps = 7/164 (4%)
Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAG
Sbjct: 12  LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAG 71
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   ++VYD++   S++N N+W  E    A     +N    ++GNK
Sbjct: 72  QERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNK 127
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +D+   + R V  +++K + A +  + + ETSA    NV+ AFE
Sbjct: 128 SDL--AHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFE 168

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+    +    +++GNK+
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 122
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 123 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF S+  A+YR A   +LVYD+   ++FD+L  W +     AS    E+   +++GNK D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 142
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            +    R ++ ++ + +      + + E SAK+ FNV+  F  +  + LK 
Sbjct: 143 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 105/167 (62%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+ +  +    +++GNK 
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNKC 136
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+
Sbjct: 137 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMAR 180

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  117 bits (292), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +   +    +D      V  GNK+
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQLLLV--GNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D +   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 119 DXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 98/167 (58%), Gaps = 8/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAGQ
Sbjct: 3   IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYDV   ++F N+  W +   +    +D      V  GNK+
Sbjct: 63  ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT--VNEHANDEAQLLLV--GNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D +   +RVV+  + +A     G IP+ E+SAK   NV   F  +AK
Sbjct: 119 DXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 106/186 (56%), Gaps = 8/186 (4%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+     L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+S+  ++YRGA   +LVYD+   ++++ L NW    L  A     +N   
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVI 118
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF-ECIAKNALKN 179
           ++ GNK D+D    R V+  +A  + A +  + + ETSA  G NVE AF +C  K   K 
Sbjct: 119 ILCGNKKDLDA--DREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNKI 175
Query: 180 EPQEED 185
           E  E D
Sbjct: 176 ESGELD 181

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 7/172 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +++GNK 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVIILIGNKA 130
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK +    G + + E SAK G NVE AF   AK   +N
Sbjct: 131 DLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 179

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/166 (38%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF SL   +YR A   ++VYDV   +SF    +W +E   QAS    ++    ++GNK D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKID 119
Query: 129 V--DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
              +GG  +V  E+  K   A +  + +FETSAK G NV   F  I
Sbjct: 120 XLQEGGERKVAREEGEK--LAEEKGLLFFETSAKTGENVNDVFLGI 163

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++V+DV    SF+    W +E   Q +P    N    + GNK+D+
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
              ++R V+ + A+ +    G + + ETSAK   NV+  F  IA+   + +P E
Sbjct: 130 L--DARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 98/163 (60%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W      Q      +N   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++  + RVVS ++ +      G   +FE SAK+  NV+  FE
Sbjct: 121 DME--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 160

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NK D
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKID 120
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +   +   +  ++A+   A +  + ++ TS KE  NV   F+ +A+  L+ 
Sbjct: 121 L--LDDSCIKNEEAEG-LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 30  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            RF+++  ++YRGA   ++VYD+    ++++L++W    L  A      N   +++GNK 
Sbjct: 90  GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVIILIGNKA 145
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK +    G + + E SAK G NVE AF   AK   +N
Sbjct: 146 DLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 194

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+ + K+TIG +F T+ ++ E++    QIWDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   ++VYD++   S++N N+W    L +   +  +N    ++GNK+
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW----LTELRENADDNVAVGLIGNKS 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D+   + R V   +AK + A +  + + ETSA    NV+ AF
Sbjct: 126 DL--AHLRAVPTDEAKNF-AMENQMLFTETSALNSDNVDKAF 164

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQIWDTAG
Sbjct: 10  FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 69
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+S+  ++YRGA   +LVYD+   ++++ L NW    L  A     +N   ++ GNK
Sbjct: 70  QERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNK 125
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
            D+D    R V+  +A  + A +  + + ETSA  G +VE AF   A+  L
Sbjct: 126 KDLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKIL 173

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS         V++GNK 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKI 141
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D+     R VS+++A+ +  ++ ++ Y ETSAKE  NVE  F
Sbjct: 142 DL--AERREVSQQRAEEFSEAQ-DMYYLETSAKESDNVEKLF 180

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAGQ
Sbjct: 23  MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W      Q      +N   +++GNK 
Sbjct: 83  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++    RVV  +K +   A +    +FE SAKE  +V  AFE
Sbjct: 139 DME--EERVVPTEKGQL-LAEQLGFDFFEASAKENISVRQAFE 178

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTIL 187

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 10  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK+
Sbjct: 70  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+    +R V  ++A+ +  + G + + ETSA +  NVE AFE + K
Sbjct: 126 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 169

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R    KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++G
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 118
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           NK D++    R VS ++A+++  S G   ++ TSAK+   +E  F
Sbjct: 119 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELF 160

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 7/171 (4%)
Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQIWDTAG
Sbjct: 7   FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG 66
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            ERF+S+  ++YRGA   +LVYD+   ++++ L NW    L  A     +N   ++ GNK
Sbjct: 67  LERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNK 122
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
            D+D    R V+  +A  + A +  + + ETSA  G +VE AF   A+  L
Sbjct: 123 KDLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKIL 170

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A  +       +++GNK+
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+    +R V  ++A+ +  + G + + ETSA +  NVE AFE + K
Sbjct: 141 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 184

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 7/164 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTS++ ++    F N Y++TIG DFL+K +  ++    LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   ++VYD+   +SF+N   W ++ L +      ++    ++GNKTD+
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG----KDVIIALVGNKTDL 118
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
             G+ R V+ ++     A + N  + ETSAK G N++  F+  A
Sbjct: 119 --GDLRKVTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLFKKTA 159

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQIWDTAGQ
Sbjct: 22  MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF  + +W      Q      +N   +++GNK 
Sbjct: 82  ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQVILVGNKC 137
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D++  + RVV  +  +      G   +FE SAKE  NV+  FE
Sbjct: 138 DLE--DERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFE 177

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R++++  A+YRGA   +L YD+   +SF+ + +W      Q      +N   +++GNK D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
            +  + RVVS ++ +      G   +FE SAK+  NV+  FE
Sbjct: 125 XE--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R    KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDT
Sbjct: 17  RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDT 76
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++G
Sbjct: 77  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 132
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           NK D++    R VS ++A+++  S G   ++ TSAK+   +E  F  + K  ++ 
Sbjct: 133 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  106 bits (264), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R    KV++LG+  VGKTSL+ +Y   KF++++  T+ A FLTK++    +   L IWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDT 62
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++G
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 118
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           NK D++    R VS ++A+++  S G   ++ TSAK+   +E  F
Sbjct: 119 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELF 160

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK+
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+     R VS  +A++       +   ETSAK+  NVE AF  +A   +
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D  N    ++GNK  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---XLVGNK-- 130
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +D  N  V   +  K   A K +  + E SAK    V+ AFE + +  ++
Sbjct: 131 IDKENREVDRNEGLK--FARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 10/174 (5%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDT
Sbjct: 17  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 65  AGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           AGQERF +S+   +YR     V VYD+  M SF +L  W EE       +D    P +++
Sbjct: 77  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAK 174
           GNK D+       V    A+ + A   ++P FETSAK   +  +VEA F  +A 
Sbjct: 134 GNKCDLRSAIQ--VPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           ++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +++  ++YRGA   ++VYDV   +SF+N+  W +E    AS    EN   +++GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 115

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 92/174 (52%), Gaps = 10/174 (5%)
Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           R  + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDT
Sbjct: 26  RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 85
Query: 65  AGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           AGQERF +S+   +YR     V VYD     SF +L  W EE       +D    P +++
Sbjct: 86  AGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IPRILV 142
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAK 174
           GNK D+       V    A+ + A   + P FETSAK   +  +VEA F  +A 
Sbjct: 143 GNKCDLRSAIQ--VPTDLAQKF-ADTHSXPLFETSAKNPNDNDHVEAIFXTLAH 193

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+S+  +++R AD  +L+YDV   KSF N+  W +  +I+ +    E  P +++GNK D+
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD--MIEDAAH--ETVPIMLVGNKADI 145
Query: 130 DGGNS----RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
               +    + V     +    + G + + ETSAK+G N+  A   +A+   K
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
           LK+++LGD   GKTSL   +    F  QYK TIG DF  + +     L  TLQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GNK 126
                +   +  GA   +LVYD+   +SF+NL +W    +++    + E  P V L GNK
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETQPLVALVGNK 124
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
            D++  + R +  +K   +C   G   +F  SAK G +V   F+ +A   L
Sbjct: 125 IDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEIL 172

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++++RE+        D E+ P V++GNK+D+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
               SR V  K+A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 65
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V
Sbjct: 66  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 120
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           + GNK D        V E+K KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 121 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 171
Query: 179 NEPQEE 184
             PQ E
Sbjct: 172 GNPQLE 177

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V
Sbjct: 59  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 113
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           + GNK D        V E+K KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 114 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 164
Query: 179 NEPQEE 184
             PQ E
Sbjct: 165 GNPQLE 170

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
            K++++GD G GKT+ + +++  +F  +Y ATIG +     F T   E++F+       +
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 57
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           WDTAG E+F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V
Sbjct: 58  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           + GNK D        V E+K KA   +   K N+ Y++ SAK  +N E  F  +A+  L 
Sbjct: 113 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 163
Query: 179 NEPQEE 184
             PQ E
Sbjct: 164 GNPQLE 169

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++++RE+        D E+ P V++GNK D+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
               SR V  K+A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 131 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            G   R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 AG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 118
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 119 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++ +DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           ++  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               +R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               +R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               +R V  ++A+    S G IPY ETSAK    VE AF  + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y  T+G +                +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 127
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  + +   E  
Sbjct: 128 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 179
Query: 186 YLP 188
            +P
Sbjct: 180 AMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 121
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  + +   E  
Sbjct: 122 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 173
Query: 186 YLP 188
            +P
Sbjct: 174 AMP 176

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD G GKT+ + +++  +   +Y AT+G +                +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           +F  L   +Y  A C ++++DV    ++ N+ NW  + L++      EN P V+ GNK D
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
                   + ++K KA       K N+ Y++ SAK  +N E  F  +A+  +
Sbjct: 131 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 4   RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---RLFTLQ 60
           RR +  K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA  +   V F D    +    
Sbjct: 7   RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFN 64
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE+   L   +Y GA   +L +DV    +  NL  W +EF  QA   +    P 
Sbjct: 65  VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PI 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           VV  NK D+   N + +S+K        K N  YFE SAK   N    F  +A+
Sbjct: 121 VVCANKIDIK--NRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 14/164 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F ++Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----AKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++    A+ WC    N  + E+SAK   NV   F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----AKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++    A+ WC    N  + E+SAK   NV   F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 129
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E K +   A + N+ Y ETSAK   NV+  F
Sbjct: 130 DLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 133
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E K +   A + N+ Y ETSAK   NV+  F
Sbjct: 134 DLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E K +   A + N+ Y ETSAK   NV+  F
Sbjct: 122 DLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 160

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 119
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E K +   A + N+ Y ETSAK   NV+  F
Sbjct: 120 DLEDKRQVSVEEAKNR---ADQWNVNYVETSAKTRANVDKVF 158

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   ++   +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L   FY  A   +L +DV    SFDN+ N W  E          +  P +V+G KT
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKT 148
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+    S V          V+  + +    S G + Y E SA+   NV A F+  A+ AL
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
Query: 178 KN 179
            +
Sbjct: 209 SS 210

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++ +       N  + E+SAK   NV   F
Sbjct: 121 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D ++ P +++GNK D+
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 122
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           +  + RVV +++ +       N  + E+SAK   NV   F
Sbjct: 123 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 20/205 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    YRGAD  VL + +    S++N L  W  E L + +P    N P V++G K
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVPIVLVGTK 122
Query: 127 TDV--DGG----NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
            D+  D G    ++ V++  + +      G   Y E S+K   NV+A F+   K  L  +
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL--Q 180
Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCE 205
           P     +P        +  R SGC 
Sbjct: 181 PPRRKEVPRR-----RKNHRRSGCS 200

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 89/162 (54%), Gaps = 7/162 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E K +   A + N+ Y ETSAK   NV+  F
Sbjct: 122 DLEDKRQVSVEEAKNR---AEQWNVNYVETSAKTRANVDKVF 160

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++++RE+        D E+ P V++GNK+D+    SR V  K
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 17  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++++RE+        D E+ P V++GNK+D+    SR V  K
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +  +  L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 23  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 135
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 136 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++++RE+        D E+ P V++GNK D+    SR V  K
Sbjct: 93  GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL---PSRTVDTK 146
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +A+    S G IP+ ETSAK    V+ AF  + +   K++
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 185

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F + Y  TI   +L K  + +++   L + DTAGQE F ++   + R 
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  +LV+ +   +SF     +RE+ L   +  D    P +V+GNK+
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED--KIPLLVVGNKS 123
Query: 128 DVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E ++KA  W      + Y ETSAK   NV+  F
Sbjct: 124 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T  AD   K+V  +     + I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  +LV+ +   +SF     +RE+ L   +  D    P +V+GNK+
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED--KIPLLVVGNKS 119
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           D++      V E ++K   A +  + Y ETSAK   NV+  F
Sbjct: 120 DLEERRQVPVEEARSK---AEEWGVQYVETSAKTRANVDKVF 158

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F  +Y  TI   +L K  + +++   L + DTAGQE F ++   + R 
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K +L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GN+ D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNRCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 22  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 81  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 134
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 167

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F  +Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F ++Y  TI  D   K  + +++   L + DTAGQE F ++   + R 
Sbjct: 31  KSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 90  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ------------------ 51
           K ++LG+S VGK+S++ +     F      TIGA F T  V                   
Sbjct: 9   KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 52  -----------------FEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92
                            + + L  ++  IWDTAGQER+ S+   +YRGA C ++V+D++ 
Sbjct: 69  NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 93  MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152
             + D    W  +  I +      N+  +++ NK D +     ++  +K     A   N+
Sbjct: 129 SNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY----AQDNNL 178
Query: 153 PYFETSAKEGFNVEAAFECIAKNALKN 179
            + +TSAK G N++  F  +A+   KN
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  +I  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+  + F   Y  TI   +L K  + +++   L + DTAGQE F ++   + R 
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            D  ++VY V    SF++++ + +  L      D E+FP +++ NK  VD  + R V+  
Sbjct: 85  GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 139
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
           + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 140 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DT GQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG+E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F +++  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTA QE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE   ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F + Y  TI  D  TK    +     L I DTAGQE F ++   + R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
               +LV+ +N  +SF+ +     + L      D ++FP V++GNK D++  + R V   
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPVVLVGNKADLE--SQRQVPRS 135
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           +A A+ AS  ++ YFE SAK   NV+ AFE + +   K + QE
Sbjct: 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE F ++   + R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  +LV+ V    SF+ +  ++ + L      D + FP +++GNK D+D  + R V+++
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADLD--HQRQVTQE 131
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           + +   A +  + Y E SAK   NV+ AF  + +   K + Q
Sbjct: 132 EGQ-QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQ 172

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 21  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 80  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y  +D  +L + VN   SFDN++  W  E       +       V++G K 
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-----VLVGLKV 137
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETS--AKEGFN--VEAAFECIAKN 175
           D+    S  V++++    C   G + Y E S  AK G N   E + +CI  N
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 34  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF ++N +RE+        D ++ P V++GNK D+    +R V  K
Sbjct: 93  GEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDLP---TRTVDTK 146
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A     S G IP+ ETSAK    VE AF  + +
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 179

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y  +D  +L + VN   SFDN++  W  E       +       V++G K 
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-----VLVGLKV 136
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETS--AKEGFN--VEAAFECIAKN 175
           D+    S  V++++    C   G + Y E S  AK G N   E + +CI  N
Sbjct: 137 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++   TI  D   K+V  +     L I DTAGQE + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK+D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q +   F ++Y  TI  D   K+V  +     L I DTAG E + ++   + R 
Sbjct: 16  KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
            +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D+    +R V  +
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +A+    S G IPY ETSAK    VE AF  + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT ++  Y    F   Y  T+  +F +  V  +     L 
Sbjct: 1   MSTAR--FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLG 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N++  W  E L   +P      P
Sbjct: 58  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAP----GIP 112
Query: 120 FVVLGNKTDV--------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            V++G K D+        D   +  ++  + +      G + Y E S+K   NV+A F+ 
Sbjct: 113 IVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDT 172
Query: 172 IAKNALK 178
             + AL+
Sbjct: 173 AIRVALR 179

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 11/173 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L  +F  G    VLVY V  + SF  + +  ++             P V++GNK D+
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL---HEGHGKTRVPVVLVGNKADL 141
Query: 130 DGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
                   V  +K A++W A+     + E+SA+E    +  F  + +   + E
Sbjct: 142 SPEREVQAVEGKKLAESWGAT-----FMESSARENQLTQGIFTKVIQEIARVE 189

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V  +     L 
Sbjct: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLG 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N+   W  E L   +P      P
Sbjct: 58  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVP 112
Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            +++G K D        +D   +  ++  + +      G+  Y E S+K   NV+A F+ 
Sbjct: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172
Query: 172 IAKNALK 178
             K  L+
Sbjct: 173 AIKVVLQ 179

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 123
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
                RV+S ++ KA  A   N  + E+SAKE       F  I   A K E
Sbjct: 124 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEKLE 171

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           KV ++G++ VGK++L++ + ++  KF   Y  T G + +   V   D   +++++  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G + ++     ++ G    +LV+DV+ M+SF++   W  E L  A P        V++ N
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVAN 140
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGFNVEAAFECIAKNALKN 179
           KTD+     +V  +  A+ W A+   + +F+ SA   G + +A F  IA    +N
Sbjct: 141 KTDLPPQRHQVRLD-MAQDW-ATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 123
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
                RV+S ++ KA  A   N  + E+SAKE       F  I   A K
Sbjct: 124 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 118
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
                RV+S ++ KA  A   N  + E+SAKE
Sbjct: 119 H--MERVISYEEGKA-LAESWNAAFLESSAKE 147

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L 
Sbjct: 3   MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N++  W  E L   +P      P
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114
Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            V++G K D        +D   +  ++  + +      G   Y E S+K   NV+  F+ 
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
Query: 172 IAKNALK 178
             +  L+
Sbjct: 175 AIRVVLQ 181

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 76
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFXP-NVPI 132
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +   + +G           Y E SAK    V   FE
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
Query: 171 CIAKNALK 178
              +  L+
Sbjct: 193 MATRAGLQ 200

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 3   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 59  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 175 MATRAALQ 182

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 2   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 58  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 113
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 174 MATRAALQ 181

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           ++LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L ++DTAG
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE +  L    Y   D  ++ + V    SF N+   +EE++ +     P N PF+++G +
Sbjct: 76  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPFLLIGTQ 131
Query: 127 TDV--DGGNSRVVSEKKAKAWCASKGN 151
            D+  D      +++ K K  C  +G 
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQ 158

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 4   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 59
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 60  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 115
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 176 MATRAALQ 183

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 3   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 59  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 175 MATRAALQ 182

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 2   MAAIRK---KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 57
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 58  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 113
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 174 MATRAALQ 181

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 3   MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 59  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 175 MATRAALQ 182

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 76
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 132
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +   + +G           Y E SAK    V   FE
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
Query: 171 CIAKNALK 178
              +  L+
Sbjct: 193 MATRAGLQ 200

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 70  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 125
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D    R +++ K +     +G           Y E SAK    V   FE   + AL+
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +V+ + R   L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDTAGQED 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128
           +  L    Y  ++  ++ + +++  S +N+   W  E L        +  P +++G K D
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPIILVGCKVD 125
Query: 129 VDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +      +          V+ ++ ++     G   Y+E SAK G+ V   FE   + +L
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++           +LVY +   +S + L    E+  I     D E+ P +++GNK   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNK--C 119
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D   SR V   +A+A  A      + ETSAK   NV+  F+
Sbjct: 120 DESPSREVQSSEAEAL-ARTWKCAFMETSAKLNHNVKELFQ 159

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ ILG   VGK+SL  Q+V  +F +    TI   F TK +    + + LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D+
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
                RV+S ++ KA  A   N  + E+SAKE
Sbjct: 122 H--MERVISYEEGKA-LAESWNAAFLESSAKE 150

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +       Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRARPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D   +R +++ K +    ++G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +     +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
              + AL+
Sbjct: 173 MATRAALQ 180

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L 
Sbjct: 1   MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 56
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WDTAGQE +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P 
Sbjct: 57  LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
           +++GNK D+  D    R +++ K +   + +G           Y E SAK    V   FE
Sbjct: 113 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
Query: 171 CIAKNALK 178
              +  L+
Sbjct: 173 MATRAGLQ 180

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 119
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D    R +++ K +     +G           Y E SAK    V   FE   + AL+
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 64  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 119
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNAL 177
             D    R +++ K +     +G           Y E SAK    V   FE   + AL
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ ++F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 87
Query: 69  -RFQSLGVAFYRGADCCVLVYDVNVMKSFDN---LNNWREEFLIQASPSDPENFPFVVLG 124
              Q  G    R  +  VLVYD+    SF+    L N  +E         P+N   +++G
Sbjct: 88  DTIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVG 139
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162
           NK D+D  +SR VS ++ +   A++    ++E SA  G
Sbjct: 140 NKADLD--HSRQVSTEEGEK-LATELACAFYECSACTG 174

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S+    +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +W
Sbjct: 2   SKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLW 60
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFV 121
           DTAGQE +  L    Y   D  ++ + +    SF+N+   W  E           N P +
Sbjct: 61  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPII 115
Query: 122 VLGNKTDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFEC 171
           ++G K D+  D      + EKK          A     G + Y E SA     ++  F+ 
Sbjct: 116 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 175
Query: 172 IAKNALKNEP 181
             +  L   P
Sbjct: 176 AIRAVLCPPP 185

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV I+G+   GK++L+++Y+   +  Q ++  G  F  KE+  + + + L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             Q     F    D  V V+ +    SF  + N+   FL   S  +    P V++G +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           +   N RV+ + +A+          Y+ET A  G NVE  F+ +A+  +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 119
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
Query: 178 KNEP 181
              P
Sbjct: 180 CPPP 183

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+F S+   + + 
Sbjct: 16  KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
               +LVY +   +SF ++   R++ +        E  P +++GNK D++       SE 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           +A    A +   P+ ETSAK    V+  F  I + 
Sbjct: 132 RA---LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            F  L    Y   D  +L + V    SF N++  W  E       +     P +++G ++
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIILVGTQS 134
Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D          +D    + V E+ AK          Y E SA    N++  F+
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT L+  +   +F   Y  T+  +++  +++ + +   L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + V+   S D+L N  E+++ +     P N P +++ NK D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVD---SPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDL 141
Query: 130 DGGNS----------RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
                            V     +A         Y E SAK    V   FE   + AL+
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 122 LRDDPSTI--EKLAK 134

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    FS +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 127
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 180

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 K 178
           K
Sbjct: 178 K 178

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 121 LRDDPSTI--EKLAK 133

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 128
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 129 LRDDPSTI--EKLAK 141

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 122 LRDDPSTI--EKLAK 134

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 119
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 120 LRDDPSTI--EKLAK 132

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 123 LRDDPSTI--EKLAK 135

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 126 LRDDPSTI--EKLAK 138

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 121 LRDDPSTI--EKLAK 133

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++I+GD   GKT L+      +F   Y  T+  +++  +++ + +   L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L    Y   D  ++ + ++   S D+L N  E++  +     P N P +++GNK D+
Sbjct: 69  YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 124
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
             D    R +++ K +     +G           Y E SAK    V   FE   + AL+
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 17/187 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    S++N+   W  E +    PS     P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK       +G        ++ Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEPQEE 184
             +P  +
Sbjct: 178 CPQPTRQ 184

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 136
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 189

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y   +  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y   KF ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 126 LRDDPSTI--EKLAK 138

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   K  ++Y  T+  ++    V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 17/187 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEPQEE 184
              P ++
Sbjct: 178 CPPPVKK 184

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+  D      + EKK          A     G + Y E SA     ++  F+   +  L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
              P
Sbjct: 178 CPPP 181

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 123 LRDDPSTI--EKLAK 135

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  ++    V      +TL ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+   +E+++ + +   P+  PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
           +    S +  EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y       +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           + P +++G K 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+      +          ++  +  A     G++ Y E SA     ++  F+
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           + P +++G K 
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+      +          ++  +  A     G++ Y E SA     ++  F+
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGK  L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 177

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           + P +++G K 
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 117
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+      +          ++  +  A     G++ Y E SA     ++  F+
Sbjct: 118 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 170

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 120
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 173

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    S++N+   W  E +    PS     P +++G K 
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 123
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK       +G        ++ Y E SA     ++  F+
Sbjct: 124 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 176

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 89
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N+   W  E           N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    S++N+   W  E +    PS     P +++G K 
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFE 170
           D+  D      + EKK       +G        ++ Y E SA     ++  F+
Sbjct: 125 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 177

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    Y   D  ++ + +    SF ++   W  E           N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    Y   D  ++ + +    SF ++   W  E           N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
           E +  L    Y   D  ++ + +    SF ++   W  E           N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
            D+  D      + EKK          A     G + Y E SA     ++  F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L +V++LGD GVGKTSL + +  ++  + ++  +G D   + +  +    TL + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68  ERFQSLGV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           E+        +  +G    V+VY +    SF++ +  R +          ++ P +++GN
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPIILVGN 119
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           K D+     R VS ++ +A CA   +  + ETSA    NV   FE
Sbjct: 120 KADL--ARCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFE 161

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
           L++ +LGD+  GK+SL+++++   +       S QYK         KE+  + +   + I
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
            + AG     +    F   AD  + V+ +    SF  ++    + L              
Sbjct: 59  REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++G +  +   + RVV + +A+A CA      Y+ET A  G NV+  F+ +A+  +    
Sbjct: 113 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 QEE 184
           Q++
Sbjct: 173 QQQ 175

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 36/203 (17%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  ++ +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 69  RFQSLGVAFY--------------RG-----ADCCVLVYDVNVMKSFDNLN-NWREEFLI 108
            +  L    Y              RG     AD  ++ + +    SF+N+   W  E   
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 109 QASPSDPENFPFVVLGNKTDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETS 158
                   N P +++G K D+  D      + EKK          A     G + Y E S
Sbjct: 125 HCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 179
Query: 159 AKEGFNVEAAFECIAKNALKNEP 181
           A     ++  F+   +  L   P
Sbjct: 180 ALTQRGLKTVFDEAIRAVLCPPP 202

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 28/184 (15%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 116
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           G   D        VS++K +  C SK          KE  N +  F  I      N  +E
Sbjct: 117 GTHLD--------VSDEKQRKACXSK--------ITKELLN-KRGFPAIRDYHFVNATEE 159
Query: 184 EDYL 187
            D L
Sbjct: 160 SDAL 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 21  KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
           K+SL+ ++V   F + Y  TI  D   + +  +  + TLQI DT G  +F ++       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81  ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
               +LV+ V   +S + L    +  LI       E+ P +++GNK D      R V  +
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYK--LIVQIKGSVEDIPVMLVGNKCD---ETQREVDTR 134
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +A+A  A +    + ETSAK  +NV+  F+
Sbjct: 135 EAQA-VAQEWKCAFMETSAKMNYNVKELFQ 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 153
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQEE 184
           K+D+       VSE +A   CA   +  + ETSA    NV+  FE I +   L+ + +E+
Sbjct: 154 KSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
Query: 185 D 185
           +
Sbjct: 211 N 211

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
           K+ I+G++G GKT+L+ Q    K S+     AT+G D     +Q  D   R   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVL 123
           AG+E F S    F       + VYD++  ++  D    W      +AS S     P +++
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 118
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASK 149
           G   D        VS++K +  C SK
Sbjct: 119 GTHLD--------VSDEKQRKACXSK 136

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           K+D+       VSE +A   CA   +  + ETSA    NV+  FE I +  
Sbjct: 123 KSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
           S + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +W
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLW 60
Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFV 121
           DT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N   +
Sbjct: 61  DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKML 115
Query: 122 VLGNKTDVDGGNSRVV 137
           ++G K+D+    S +V
Sbjct: 116 LVGCKSDLRTDVSTLV 131

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N  
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134
Query: 120 FVVLGNKTDVDGGNSRVV 137
            +++G K+D+    S +V
Sbjct: 135 MLLVGCKSDLRTDVSTLV 152

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 74
Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D+ L  W+ E + +  P    N  
Sbjct: 75  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 129
Query: 120 FVVLGNKTDVDGGNSRVV 137
            +++G K+D+    S +V
Sbjct: 130 MLLVGCKSDLRTDVSTLV 147

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L    PS       +++G KTD
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 126
Query: 129 V 129
           +
Sbjct: 127 L 127

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L    PS       +++G KTD
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 125
Query: 129 V 129
           +
Sbjct: 126 L 126

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S +     +G D   + +  +     +  L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQEE 184
           K+D+       VSE +A A      +  + ETSA    NV+  FE I +   L+ + +E+
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVF---DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179
Query: 185 D 185
           +
Sbjct: 180 N 180

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + ++    Y  +D  +L +D++  ++ D+ L  WR E L    PS       +++G KTD
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 142
Query: 129 V 129
           +
Sbjct: 143 L 143

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIWDTA 65
           +V+++G+ GVGK++L N +     S +     +G D   + +  +     +  L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++GN
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQEE 184
           K+D+       VSE +A A      +  + ETSA    NV+  FE I +   L+ + +E+
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVF---DXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179
Query: 185 D 185
           +
Sbjct: 180 N 180

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG  GVGK++L   +      +  +A        + +  +    +L ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +  + L        D  V+VY V    SF+  +  R + L +A  +D  + P +++GNK+
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
           D+    SR VS  + +A CA   +  + ETSA    NV+A FE + +   L+ + +E
Sbjct: 122 DL--VRSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKE 175

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG  GVGK++L   +      +  +A        + +  +    +L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +  + L        D  V+VY V    SF+  +  R + L +A  +D  + P +++GNK+
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKS 116
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           D+    SR VS  + +A CA   +  + ETSA    NV+A FE + + 
Sbjct: 117 DLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG  GVGK++L   +      +  +A        + +  +    +L ++D   Q
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +  + L        D  V+VY V    SF+  +  R + L +A  +D  + P +++GNK+
Sbjct: 65  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           D+    SR VS  + +A CA   +  + ETSA    NV+A FE + + 
Sbjct: 122 DLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 55
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +YR  +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N+LKN
Sbjct: 113 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 162

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
           L++ +LGD+  GK+SL+++++   +       S QYK         KE+  + +   + I
Sbjct: 8   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
            + AG     +    F   AD  + V+ +    SF  ++    + L              
Sbjct: 59  REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++G +  +   + RVV + +A+A  A      Y+ET A  G NV+  F+ +A+  +    
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 QEE 184
           Q++
Sbjct: 173 QQQ 175

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +YR  +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSN---DRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKNE 180
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N LKN+
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNN-LKNQ 180

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +YR  +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N+LKN
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 179

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +FS     T+G  F  ++V   +   T++IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKIWDIGGQP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           RF+S+   + RG +  V + D      +  S + L+N  ++  +Q         P +VLG
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG-------IPVLVLG 131
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           NK D+          +K          I  +  S KE  N++   + + +++
Sbjct: 132 NKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG+SGVGK++L   +   +  N ++     D   + +  +    TL ++D   Q
Sbjct: 12  VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-FPFVVLGN 125
                 L     +  D  ++V+ V   +SF  +     E L++     P +  P +++GN
Sbjct: 72  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPVILVGN 127
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           K+D+    SR VS ++ +    +  +  + ETSA    N    FE
Sbjct: 128 KSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 169

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78
Query: 69  RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           RF+S+   + RG    V + D      +  S + L+N  ++  +Q         P +VLG
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG-------IPVLVLG 131
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           NK D+ G        +K          I  +  S KE  N++   + + +++
Sbjct: 132 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 69  RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           RF+S+   + RG    V + D      +  S + L+N  ++  +Q         P +VLG
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG-------IPVLVLG 140
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           NK D+ G        +K          I  +  S KE  N++   + + +++
Sbjct: 141 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 192

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTL---QIW-- 62
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL    IW  
Sbjct: 23  IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 63  -DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-FPF 120
            D  G  R   L     +  D  ++V+ V   +SF  +     E L++     P +  P 
Sbjct: 83  GDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPV 133
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           +++GNK+D+    SR VS ++ +    +  +  + ETSA    N    FE
Sbjct: 134 ILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 180

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT--- 64
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D    
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65  --AG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-F 118
             AG   Q+     G AF       ++V+ V   +SF  +     E L++     P +  
Sbjct: 62  GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKV----PETLLRLRAGRPHHDL 110
Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
           P +++GNK+D+    SR VS ++ +   A   +  + ETSA    N    FE
Sbjct: 111 PVILVGNKSDL--ARSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFE 159

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKTS++ +    K            F  + V++++  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTSILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +Y+     + V D N     D +   REE +   +  +  N   +V  NK D
Sbjct: 73  KIRPLWRHYYQNTQAIIFVVDSN---DRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 VDGGNS-RVVSEK------KAKAW-----CASKGNIPY 154
           +    S   V+EK      K + W     CA+ G+  Y
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLY 167

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    K            F  + V+F +  FT  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKV---KLGEVVTTIPTIGFNVETVEFRNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +Y   D  + V D N  +  D+    REE     +  + ++   +V  NK D
Sbjct: 73  KIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVFANKQD 129
Query: 129 VDGGNSRV-VSEK------KAKAW-----CASKGNIPYFETSAKEGFN 164
           +    S   V+EK      + + W     CA++G+  Y      EGF+
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLY------EGFD 171

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q++  +  +    TIG++   +E+  ++  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKNTHFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +S    +Y   +  +LV D     S D   L   +EE     +  D      ++  NK 
Sbjct: 73  LRSSWNTYYSNTEFIILVVD-----SIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127
Query: 128 DVDG 131
           D+ G
Sbjct: 128 DMKG 131

>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 11  VIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ G   VGK+S MN  V +  S  + Y  T   D + K ++    +  + + DT G +
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMELHP-IGPVTLVDTPGLD 94
Query: 69  RFQSLG--------VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
               LG          FYR ADC +LV D       D++ N  +E             PF
Sbjct: 95  DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEM----------EIPF 143
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+ NK DV G  +     ++ K    S+        SA +    +  F+ I K   +  
Sbjct: 144 VVVVNKIDVLGEKA-----EELKGLYESRYEAKVLLVSALQ----KKGFDDIGKTISEIL 194
Query: 181 PQEED--YLPDTIDVG 194
           P +E+  YL D ID G
Sbjct: 195 PGDEEIPYLGDLIDGG 210

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 19/175 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ- 67
           + + ILG  G GK++L  +++ ++F ++Y   +  D  + E   + +   L++ DTA   
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 68  -----ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
                ER+ +   AF       ++VY V+  +SFD+ +++ E   + A  +   + P ++
Sbjct: 81  TPRNCERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALL 132
Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAKNA 176
           LGNK D+     R V++ +  A     G + +FE SA   F +V+  F    + A
Sbjct: 133 LGNKLDM--AQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVREA 184

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G  G GKT+++ +    K            F  + VQ+ +  FT  +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVECVQYCNISFT--VWDVGGQD 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R +SL   +Y   +  + V D N       +   RE      +  +  N  ++V  NK D
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
           +    S   +E   K    S  N P+F   T A  G  +    E ++ N LKN
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NCLKN 179

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 24  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 78
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 79  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 77
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 17  LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 72  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 128
Query: 129 VDGGNS----RVVSEK---KAKAWC 146
           + G  S    R V E    ++  WC
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWC 153

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  +   S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 18  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 73  KIRPYWRSYFENTDILIYVIDSADRKRFE 101

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  +   S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
           + +    +++   D  + V D    K F+
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFE 100

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KVII+G    GKT+++ Q+   +  +    TIG++   +E+   +  F +  WD  GQE 
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK DV
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9  LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
          +++++LG    GKT+L+ Q  +   S+    T    F  K VQ +   F L +WD  GQ 
Sbjct: 5  VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
          + +    +++   D  + V D    K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++ N +  +    T+G +  T     E R F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++   +       ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
           + G  S
Sbjct: 131 LPGALS 136

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-116
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-110
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-110
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	5e-88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	7e-85
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-83
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	8e-80
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-79
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-73
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-69
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-68
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-68
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-67
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-67
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-67
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	5e-67
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	6e-67
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-66
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	4e-66
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-66
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-65
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-65
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	3e-65
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	5e-65
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-65
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-65
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	9e-65
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	2e-64
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	2e-64
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-64
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	7e-64
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-63
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-63
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-63
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-63
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-63
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	2e-62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	1e-60
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-60
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-60
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	4e-60
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	6e-60
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	8e-60
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-58
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	3e-58
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	7e-58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	9e-58
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	9e-58
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-57
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	7e-57
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-56
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-56
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-55
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-54
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-53
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-53
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	5e-53
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-51
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-49
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-43
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-38
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-37
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-37
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-36
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-36
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	6e-36
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-35
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	6e-35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-34
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-32
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-32
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-31
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-30
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	6e-30
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	5e-19
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-15
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-14
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-13
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	7e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-11
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-11
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-11
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-09
2fh5_B	214	SR-beta, signal recognition particle receptor beta	5e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	1e-08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-08
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	3e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	4e-06
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	6e-06
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	6e-05
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	9e-05
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	1e-04

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  327 bits (841), Expect = e-116
 Identities = 143/210 (68%), Positives = 168/210 (80%), Gaps = 7/210 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+Q
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPF
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VVLGNK D++   +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query: 181 PQEEDY--LPDTIDVGGGQ--QQRSSGCEC 206
            + E Y   P+ I +   +  +  +  C C
Sbjct: 178 TEVELYNEFPEPIKLDKNERAKASAESCSC 207

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  311 bits (799), Expect = e-110
 Identities = 115/181 (63%), Positives = 144/181 (79%), Gaps = 2/181 (1%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
           M+SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  + D++ T+
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
           Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV    SF+N+ +WR+EFL+ A+ + PE FP
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120

Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           FV+LGNK D +    ++VSEK A+    S G+IP F TSAK   NV+ AFE IA++AL+ 
Sbjct: 121 FVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

Query: 180 E 180
            
Sbjct: 180 N 180

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  310 bits (798), Expect = e-110
 Identities = 95/180 (52%), Positives = 125/180 (69%), Gaps = 4/180 (2%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA +   L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+Q
Sbjct: 1   MAGKS-SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPF
Sbjct: 60  IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 119

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V+LGNK D+     R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L  E
Sbjct: 120 VILGNKIDIS---ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  255 bits (654), Expect = 5e-88
 Identities = 56/171 (32%), Positives = 100/171 (58%), Gaps = 8/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +       + P  ++ NK 
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKI 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D+   +   +  ++A+   A +  + ++ TS KE  NV   F+ +A+  L+
Sbjct: 120 DLL--DDSCIKNEEAEGL-AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  249 bits (637), Expect = 7e-85
 Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 8/195 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFT 58
           +     +  KV ++G++ VGK++L++ + ++  KF   Y  T G + +   V   D   +
Sbjct: 13  IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72

Query: 59  LQIW--DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
           ++++  DTAG + ++     ++ G    +LV+DV+ M+SF++   W E  L  A P    
Sbjct: 73  VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFEL-LKSARPDRER 131

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK-EGFNVEAAFECIAKN 175
               V++ NKTD+       V    A+ W  +   + +F+ SA   G + +A F  IA  
Sbjct: 132 PLRAVLVANKTDLP-PQRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATT 189

Query: 176 ALKNEPQEEDYLPDT 190
             +N   +     D 
Sbjct: 190 FYRNYEDKVAAFQDA 204

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  242 bits (621), Expect = 8e-83
 Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 10/180 (5%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
             +   LKV I+G+   GK++L+++Y+   +  +  +  G  F  KE+  + + + L I 
Sbjct: 15  YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIR 72

Query: 63  DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122
           D  G    Q     F    D  V V+ +    SF  + N+        S  +    P V+
Sbjct: 73  DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC---SFRNASEVPMVL 124

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           +G +  +   N RV+ + +A+          Y+ET A  G NVE  F+ +A+  +    +
Sbjct: 125 VGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  236 bits (605), Expect = 8e-80
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 14/192 (7%)

Query: 1   MASRRR----MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL 56
           MAS  +    +  K++++GD G GKT+ + +++  +F  +Y AT+G +            
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 57  FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
               +WDTAGQE+F  L   +Y  A C ++++DV    ++ N+ NW  + +        E
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----E 118

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           N P V+ GNK D+   + +V ++         K N+ Y++ SAK  +N E  F  +A+  
Sbjct: 119 NIPIVLCGNKVDIK--DRKVKAKSIV---FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

Query: 177 LKNEPQEEDYLP 188
           + +   E   +P
Sbjct: 174 IGDPNLEFVAMP 185

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  234 bits (598), Expect = 2e-79
 Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 8/183 (4%)

Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
           + R    L++ +LGD+  GK+SL+++++   +    + T   +   KE+  + +   + I
Sbjct: 1   SMRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTES-EQYKKEMLVDGQTHLVLI 58

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
            + AG    +     F   AD  + V+ +    SF  ++    +                
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS-SLRGEGRGGLALA 112

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++G +  +   + RVV + +A+A  A      Y+ET A  G NV+  F+ +A+  +    
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172

Query: 182 QEE 184
           Q++
Sbjct: 173 QQQ 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  223 bits (572), Expect = 2e-75
 Identities = 59/178 (33%), Positives = 86/178 (48%), Gaps = 7/178 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAG 66
            LK+++LGD   GKTSL   +    F  QYK TIG DF  + +     L  TLQIWD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GN 125
           Q     +   +  GA   +LVYD+   +SF+NL +W     ++    + E  P V L GN
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTV--VKKVSEESETQPLVALVGN 123

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           K D++  + R +  +K   +C   G       SAK G +V   F+ +A   L  +  +
Sbjct: 124 KIDLE--HMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGIKLNK 178

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  220 bits (563), Expect = 2e-73
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 12/200 (6%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA-DFLTKEVQFEDRLFTLQIWDTA 65
           +  K+ ++GD GVGKT+ +N+ ++ +F   Y AT+GA +     +  +  +    +WDTA
Sbjct: 10  LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           GQE+   L   +Y GA   +L +DV    +  NL  W +EF            P VV  N
Sbjct: 70  GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCAN 125

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
           K D+   N + +S+K          N  YFE SAK   N    F  +A+           
Sbjct: 126 KIDIK--NRQKISKKLVMEV-LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182

Query: 186 Y----LPDTIDVGGGQQQRS 201
                 P  ++      + S
Sbjct: 183 SNVNLEPTEVNYDYHSPEES 202

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  209 bits (534), Expect = 3e-69
 Identities = 69/200 (34%), Positives = 109/200 (54%), Gaps = 7/200 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
              K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            ERF+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNK
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNK 130

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDY 186
           TD+   + R VS ++ +   A + N+ + ETSAK G+NV+  F  +A      E  ++  
Sbjct: 131 TDLA--DKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187

Query: 187 LPDTIDVGGGQQQRSSGCEC 206
             D ID+   + Q     E 
Sbjct: 188 REDMIDIKLEKPQEQPVSEG 207

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  208 bits (531), Expect = 4e-69
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 16/187 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWD 63
           +K++I+G++G GKT+L+ Q +  K S+     AT+G D     +Q  D   R   L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVV 122
            AG+E F S    F       + VYD++  ++  D +  W      +AS     + P ++
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVIL 117

Query: 123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-----YFETSAKEGFNVEAAFECIAKNAL 177
           +G   DV     R     K      +K   P     +F  + +E   +    + I   +L
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

Query: 178 KNEPQEE 184
             + +++
Sbjct: 178 NFKIRDQ 184

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  205 bits (524), Expect = 4e-68
 Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 7/177 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +  K+++LGD G GK+SL+ ++V  +F    ++TIGA F ++ +   D     +IWDTAG
Sbjct: 11  INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAG 70

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER+ SL   +YRGA   ++V+DV    SF+    W +E   Q +P    N    + GNK
Sbjct: 71  QERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNK 126

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           +D+   ++R V+ + A+ + A +  + + ETSAK   NV+  F  IA+   + +P E
Sbjct: 127 SDLL--DARKVTAEDAQTY-AQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  205 bits (524), Expect = 6e-68
 Identities = 68/177 (38%), Positives = 92/177 (51%), Gaps = 7/177 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             LKV +LGD+GVGK+S++ ++V   F +    TIGA F+TK V   + L    IWDTAG
Sbjct: 22  RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF SL   +YRG+   V+VYD+    SF  L  W +E           N    + GNK
Sbjct: 82  QERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE----NIVMAIAGNK 137

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
            D+   + R V  K AK + A        ETSAK   N+E  F+ I++     +P E
Sbjct: 138 CDLS--DIREVPLKDAKEY-AESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  204 bits (521), Expect = 3e-67
 Identities = 71/213 (33%), Positives = 118/213 (55%), Gaps = 14/213 (6%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M S    L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQ
Sbjct: 1   MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRG+   ++VYDV   +SF+ +  W +E    A+         
Sbjct: 61  IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLK 116

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK-- 178
           +++GNK D+   + RVV    AK + A    +P+ ETSA +  NVE AF  +A+   +  
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173

Query: 179 -----NEPQEEDYLPDTIDVGGGQQQRSSGCEC 206
                NE  ++      +++ G     + GC C
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  204 bits (521), Expect = 3e-67
 Identities = 78/200 (39%), Positives = 116/200 (58%), Gaps = 18/200 (9%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT-------- 58
            L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +           
Sbjct: 24  YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFK 83

Query: 59  --LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
             LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +    A     E
Sbjct: 84  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCE 140

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           N   V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE A E +    
Sbjct: 141 NPDIVLIGNKADLP--DQREVNERQAREL-ADKYGIPYFETSAATGQNVEKAVETLLDLI 197

Query: 177 LK--NEPQEEDYLPDTIDVG 194
           +K   +  E+  +PDT++ G
Sbjct: 198 MKRMEQCVEKTQIPDTVNGG 217

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  202 bits (517), Expect = 4e-67
 Identities = 70/170 (41%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK D+
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADL 123

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
              N R V  ++A+++ A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 124 A--NKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  202 bits (516), Expect = 5e-67
 Identities = 63/172 (36%), Positives = 104/172 (60%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 15  IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +     +P    N   +++GNK 
Sbjct: 75  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKA 130

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++    R V+ ++AK + A +  + + E SAK G NVE AF   AK   +N
Sbjct: 131 DLE--AQRDVTYEEAKQF-AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  201 bits (515), Expect = 6e-67
 Identities = 60/171 (35%), Positives = 97/171 (56%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++GNK 
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKI 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++    R VS ++A+++ A      ++ TSAK+   +E  F  + K  ++
Sbjct: 122 DLE--KERHVSIQEAESY-AESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  202 bits (515), Expect = 1e-66
 Identities = 67/191 (35%), Positives = 112/191 (58%), Gaps = 7/191 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYL 187
           D+   + R V   +A+A+ A K N+ + ETSA +  NVE AF+ I     +   Q++   
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 177

Query: 188 PDTIDVGGGQQ 198
               D   G  
Sbjct: 178 RAAHDESPGNN 188

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  200 bits (511), Expect = 4e-66
 Identities = 66/184 (35%), Positives = 104/184 (56%), Gaps = 11/184 (5%)

Query: 1   MASRRR----MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL 56
           M+S          K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR 
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 57  FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
             LQ+WDTAGQERF+SL  ++ R +   V+VYD+    SF   + W ++   +       
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS---- 118

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           +   +++GNKTD+   + R VS ++ +   A + N+ + ETSAK G+NV+  F  +A   
Sbjct: 119 DVIIMLVGNKTDLS--DKRQVSTEEGER-KAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

Query: 177 LKNE 180
              +
Sbjct: 176 PGMD 179

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  200 bits (512), Expect = 4e-66
 Identities = 63/172 (36%), Positives = 98/172 (56%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G +G GK+ L++Q++  KF      TIG +F ++ V    +   LQIWDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   +++++L  W  +    ASP    N   ++ GNK 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L  
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNK 189

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  200 bits (511), Expect = 6e-66
 Identities = 64/172 (37%), Positives = 105/172 (61%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK+
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 136

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D++  + R V  ++ +A+ A +  + + ETSAK   NVE AF   AK   + 
Sbjct: 137 DLE--SRRDVKREEGEAF-AREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  199 bits (508), Expect = 7e-66
 Identities = 64/166 (38%), Positives = 94/166 (56%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E      P    +    + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCD 122

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +   + R V E+ AK + A   +  + ETSAK   N+   F  I++
Sbjct: 123 LT--DVREVMERDAKDY-ADSIHAIFVETSAKNAININELFIEISR 165

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  199 bits (509), Expect = 1e-65
 Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 6/167 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GD+ VGKT ++ ++    FS +  +TIG DF  K ++ + +   LQIWDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YR A+  +L YD+    SF ++ +W E+    A      N   +++GNK+
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS----NIVQLLIGNKS 144

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+     R VS  +A++       +   ETSAK+  NVE AF  +A 
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  199 bits (508), Expect = 1e-65
 Identities = 64/179 (35%), Positives = 103/179 (57%), Gaps = 7/179 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+     L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQ
Sbjct: 3   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+S+  ++YRGA   +LVYD+   ++++ L NW  +  + AS     N   
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ----NIVI 118

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           ++ GNK D+D    R V+  +A  + A +  + + ETSA  G NVE AF   A+  L  
Sbjct: 119 ILCGNKKDLD--ADREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKILNK 174

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  199 bits (508), Expect = 2e-65
 Identities = 57/172 (33%), Positives = 99/172 (57%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGKT+L++++   +FS+  + TIG +F T+ V         QIWDTAG 
Sbjct: 25  VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LV+D+   +++  +  W +E    A          +++GNK+
Sbjct: 85  ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA----TIVVMLVGNKS 140

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+    +R V  ++A+ + A    + + ETSA +  NVE AFE + K     
Sbjct: 141 DLS--QAREVPTEEARMF-AENNGLLFLETSALDSTNVELAFETVLKEIFAK 189

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  198 bits (506), Expect = 3e-65
 Identities = 63/167 (37%), Positives = 106/167 (63%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+   + R V   +A+A+ A K  + + ETSA +  NVEAAF+ I  
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILT 188

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  198 bits (506), Expect = 3e-65
 Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 6/173 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             L+VII+G  GVGKTSLM ++ +  F    K+T+G DF  K V+   +   LQIWDTAG
Sbjct: 25  FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAG 84

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF S+  A+YR A   +LVYD+   ++FD+L  W +     AS     +   +++GNK
Sbjct: 85  QERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNK 140

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D +    R ++ ++ + +      + + E SAK+ FNV+  F  +  + LK 
Sbjct: 141 LDCE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  197 bits (504), Expect = 5e-65
 Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
            LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF++L  ++YRGA   +LVYDV    +F  L+NW  E     + +D      +++GNK 
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV---NMLVGNKI 131

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D +   +R V   +   + A K ++ + E SAK    V+ AFE + +  ++     E
Sbjct: 132 DKE---NREVDRNEGLKF-ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  197 bits (504), Expect = 6e-65
 Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 7/179 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M      L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + +   LQ
Sbjct: 26  MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 85

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS     N   
Sbjct: 86  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE----NVNK 141

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +++GNK D+     +VV    AK + A    IP+ ETSAK   NVE +F  +A    K 
Sbjct: 142 LLVGNKCDLT--TKKVVDYTTAKEF-ADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  197 bits (503), Expect = 6e-65
 Identities = 70/185 (37%), Positives = 108/185 (58%), Gaps = 7/185 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQ
Sbjct: 1   MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++  A+YRGA   +LVYD+   KSFDN+ NW       AS     +   
Sbjct: 61  IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA----DVEK 116

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           ++LGNK DV+  + R VS+++ +   A    I + ETSAK   NVE AF  +A++     
Sbjct: 117 MILGNKCDVN--DKRQVSKERGEKL-ALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

Query: 181 PQEED 185
            +   
Sbjct: 174 DKNWK 178

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  197 bits (503), Expect = 9e-65
 Identities = 66/177 (37%), Positives = 98/177 (55%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    AS         V++GNK 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKI 141

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+     R VS+++A+ + +   ++ Y ETSAKE  NVE  F  +A   +    Q  
Sbjct: 142 DLA--ERREVSQQRAEEF-SEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNT 195

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  197 bits (502), Expect = 2e-64
 Identities = 60/199 (30%), Positives = 104/199 (52%), Gaps = 8/199 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAG
Sbjct: 7   YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 66

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
            ER++++  A+YRGA   +L+YD+   +SF+ + +W  +    +     +N   +++GNK
Sbjct: 67  LERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNK 122

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN-EPQEED 185
            D++  + RVVS ++ +   A      +FE SAK+  NV+  FE +     +      + 
Sbjct: 123 CDME--DERVVSSERGRQL-ADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 186 YLPDTIDVGGGQQQRSSGC 204
             P       G Q      
Sbjct: 180 ADPAVTGAKQGPQLTDQQA 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  196 bits (501), Expect = 2e-64
 Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + K++++G+S VGKTS + +Y +  F+  + +T+G DF  K V   D+   LQIWDTAG
Sbjct: 21  YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAG 80

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   +L+YD+   +SF  + +W  +    +     +N   +++GNK
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNK 136

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D++  + RVV  +  +   A      +FE SAKE  NV+  FE +     + 
Sbjct: 137 CDLE--DERVVPAEDGRRL-ADDLGFEFFEASAKENINVKQVFERLVDVICEK 186

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  196 bits (501), Expect = 2e-64
 Identities = 56/175 (32%), Positives = 87/175 (49%), Gaps = 9/175 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K+++ GD+ VGK+S + +    +F     AT+G DF  K +  +     LQ+WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  +++R AD  +L+YDV   KSF N+  W +     A        P +++GNK 
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKA 143

Query: 128 D----VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D          + V     +   A      + ETSAK+G N+  A   +A+   K
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKL-AMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  195 bits (499), Expect = 2e-64
 Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 8/185 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA     L K++I+GDSGVGK+SL+ ++ +  FS  Y  TIG DF  + V+       LQ
Sbjct: 2   MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           IWDTAGQERF+++   +YRG    ++VYDV   +SF N+  W  E          ++   
Sbjct: 62  IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCR 116

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D      +VV  + A  + A +  I  FETSAKE  NVE  F CI +  L+ +
Sbjct: 117 ILVGNKNDDP--ERKVVETEDAYKF-AGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173

Query: 181 PQEED 185
                
Sbjct: 174 KDNLA 178

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  195 bits (498), Expect = 2e-64
 Identities = 64/173 (36%), Positives = 103/173 (59%), Gaps = 8/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAG
Sbjct: 2   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYD+   ++F N+  W +     A+         +++GNK
Sbjct: 62  QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNK 117

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +D++   +RVV+  + +A  A +  IP+ E+SAK   NV   F  +AK   + 
Sbjct: 118 SDME---TRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  195 bits (497), Expect = 7e-64
 Identities = 68/185 (36%), Positives = 106/185 (57%), Gaps = 13/185 (7%)

Query: 1   MASRRRM------LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED 54
           + S   M      L K++++GDSGVGK+ L+ ++ +  ++  Y +TIG DF  + ++ + 
Sbjct: 3   LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62

Query: 55  RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114
           +   LQIWDTAGQERF+++  ++YRGA   ++VYDV   +SF+N+  W +E    AS   
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-- 120

Query: 115 PENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
             N   +++GNK D+     +VV    AK + A    IP+ ETSAK   NVE +F  +A 
Sbjct: 121 --NVNKLLVGNKCDLT--TKKVVDYTTAKEF-ADSLGIPFLETSAKNATNVEQSFMTMAA 175

Query: 175 NALKN 179
              K 
Sbjct: 176 EIKKR 180

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  195 bits (498), Expect = 1e-63
 Identities = 68/203 (33%), Positives = 112/203 (55%), Gaps = 15/203 (7%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQ+WDTAG
Sbjct: 19  SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+++  A+YRGA   +LVYDV   ++F N+  W +     A+         +++GNK
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND----EAQLLLVGNK 134

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDY 186
           +D++   +RVV+  + +A  A +  IP+ E+SAK   NV   F  +AK   +     +  
Sbjct: 135 SDME---TRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV 190

Query: 187 LPD-------TIDVGGGQQQRSS 202
                     +I+ G G   +S+
Sbjct: 191 GVGNGKEGNISINSGSGNSSKSN 213

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  194 bits (496), Expect = 1e-63
 Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 7/173 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K V   ++   LQIWDTAG
Sbjct: 22  YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG 81

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QER++++  A+YRGA   +L+YD+   +SF+ + +W  +    +     +N   +++GNK
Sbjct: 82  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILVGNK 137

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D++    RVV  +K +   A +    +FE SAKE  +V  AFE +       
Sbjct: 138 CDME--EERVVPTEKGQLL-AEQLGFDFFEASAKENISVRQAFERLVDAICDK 187

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  194 bits (495), Expect = 2e-63
 Identities = 72/183 (39%), Positives = 105/183 (57%), Gaps = 16/183 (8%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFT-------- 58
            L+K + LGDSGVGKTS++ QY + KF++++  T+G DF  K V +              
Sbjct: 10  YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQR 69

Query: 59  --LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE 116
             LQ+WDTAG ERF+SL  AF+R A   +L++D+   +SF N+ NW  +  + A     E
Sbjct: 70  IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSE 126

Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           N   V+ GNK+D++  + R V E++A+   A K  IPYFETSA  G N+  A E +    
Sbjct: 127 NPDIVLCGNKSDLE--DQRAVKEEEAREL-AEKYGIPYFETSAANGTNISHAIEMLLDLI 183

Query: 177 LKN 179
           +K 
Sbjct: 184 MKR 186

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  194 bits (496), Expect = 2e-63
 Identities = 63/196 (32%), Positives = 112/196 (57%), Gaps = 7/196 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGK++L++++   +F+   K+TIG +F T+ ++ E +    QIWDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   ++VYD++   S++N N+W  E    A      N    ++GNK+
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD----NVAVGLIGNKS 128

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYL 187
           D+   + R V  +++K + A +  + + ETSA    NV+ AFE +     +   + +  L
Sbjct: 129 DLA--HLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL 185

Query: 188 PDTIDVGGGQQQRSSG 203
            D+   G      +  
Sbjct: 186 GDSSANGNANGASAPN 201

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  192 bits (490), Expect = 7e-63
 Identities = 63/176 (35%), Positives = 97/176 (55%), Gaps = 10/176 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79

Query: 68  ERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           ERF +S+   +YR     V VYD+  M SF +L  W EE       +D    P +++GNK
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILVGNK 136

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAKNALKN 179
            D+   ++  V    A+ + A   ++P FETSAK   +  +VEA F  +A     +
Sbjct: 137 CDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  190 bits (486), Expect = 2e-62
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 8/174 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           +  KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTA
Sbjct: 9   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           GQERF+S+  A+YR A   +L+YDV    SFDN+  W  E    A      +   ++LGN
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGN 124

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           K D    + RVV  +  +   A +  +P+ ETSAK G NV+ AF  IAK   + 
Sbjct: 125 KVDSA--HERVVKREDGEKL-AKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  186 bits (474), Expect = 1e-60
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 8/175 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + S      K++++GD GVGK++L  Q+  + F + Y  TI  D   K  + +++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           + DTAGQE F ++   + R  D  ++VY V    SF++++ + +  L      D E+FP 
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPM 126

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAK 174
           +++ NK D+   + R V+  + K   A+K NIPY ETSAK+   NV+  F  + +
Sbjct: 127 ILVANKVDLM--HLRKVTRDQGKEM-ATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  186 bits (474), Expect = 2e-60
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 7/179 (3%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   
Sbjct: 22  GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWE 81

Query: 67  QERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           Q      L     +  D  ++V+ V   +SF  +        ++A      + P +++GN
Sbjct: 82  QGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGN 138

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           K+D+    SR VS ++ +   A   +  + ETSA    N    FE   +       +  
Sbjct: 139 KSDLA--RSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNH 194

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  185 bits (473), Expect = 2e-60
 Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 7/185 (3%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M        K++++G  GVGK++L  Q++   F + Y  TI  D  TK    +     L 
Sbjct: 2   MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           I DTAGQE F ++   + R     +LV+ +N  +SF+ +     + L      D ++FP 
Sbjct: 61  ILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPV 117

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           V++GNK D++  + R V   +A A+  +  ++ YFE SAK   NV+ AFE + +   K +
Sbjct: 118 VLVGNKADLE--SQRQVPRSEASAF-GASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174

Query: 181 PQEED 185
            QE  
Sbjct: 175 EQELP 179

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  186 bits (473), Expect = 4e-60
 Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 47/209 (22%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR------------ 55
             K ++LG+S VGK+S++ +     F      TIGA F T  V   D             
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66

Query: 56  -------------------------LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90
                                         IWDTAGQER+ S+   +YRGA C ++V+D+
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126

Query: 91  NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150
           +   + D    W  +  ++ S     N+  +++ NK D +      V   + + + A   
Sbjct: 127 SNSNTLDRAKTWVNQ--LKISS----NYIIILVANKIDKN---KFQVDILEVQKY-AQDN 176

Query: 151 NIPYFETSAKEGFNVEAAFECIAKNALKN 179
           N+ + +TSAK G N++  F  +A+   KN
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  184 bits (469), Expect = 6e-60
 Identities = 53/170 (31%), Positives = 93/170 (54%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++   TI   +  K+V  +     L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEE 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK+D+
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKSDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
               +R V  ++A+    S G IPY ETSAK    VE AF  + +   ++
Sbjct: 121 A---ARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQH 166

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  183 bits (468), Expect = 8e-60
 Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 7/168 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV+++G+SGVGK++L   +   +  + ++     D   + +  +    TL ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 68  ERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                 L     +  D  ++V+ V   +SF  +        ++A      + P +++GNK
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR--LRAG-RPHHDLPVILVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +D+    SR VS ++ +   A   +  + ETSA    N    FE   +
Sbjct: 119 SDLA--RSREVSLEEGRH-LAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  183 bits (468), Expect = 2e-59
 Identities = 58/210 (27%), Positives = 105/210 (50%), Gaps = 13/210 (6%)

Query: 1   MASRRR------MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED 54
           MA+ +        L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  + 
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59

Query: 55  RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114
               + I DTAGQE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      +
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---E 116

Query: 115 PENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            EN PF+++GNK+D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F  + +
Sbjct: 117 DENVPFLLVGNKSDLE--DKRQVSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMR 173

Query: 175 NALKNEPQEEDYLPDTIDVGGGQQQRSSGC 204
                + ++              ++    C
Sbjct: 174 EIRARKMEDSKEKNGKKKRKSLAKRIRERC 203

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  181 bits (461), Expect = 1e-58
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 6/172 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+  D   + +  +  + TLQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++           +LVY +   +S + L    E+  I     D E+ P +++GNK D 
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNKCDE 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
               SR V   +A+A  A      + ETSAK   NV+  F+ +     +   
Sbjct: 122 S--PSREVQSSEAEA-LARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 170

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  180 bits (460), Expect = 3e-58
 Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 14/195 (7%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEE 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++++RE+        D E+ P V++GNK D+
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDL 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD 189
               SR V  K+A+    S G IP+ ETSAK    V+ AF  + +   K++ +       
Sbjct: 122 P---SRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSK---- 173

Query: 190 TIDVGGGQQQRSSGC 204
             D    +++  + C
Sbjct: 174 --DGKKKKKKSKTKC 186

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  179 bits (457), Expect = 7e-58
 Identities = 55/176 (31%), Positives = 98/176 (55%), Gaps = 7/176 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 76

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 133

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F  + +     + ++
Sbjct: 134 DLE--DKRQVSVEEAKN-RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  178 bits (454), Expect = 9e-58
 Identities = 62/166 (37%), Positives = 96/166 (57%), Gaps = 6/166 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD- 128
           F SL   +YR A   ++VYDV   +SF    +W +E   QAS     +    ++GNK D 
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDX 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  G  R V+ ++ +   A +  + +FETSAK G NV   F  I +
Sbjct: 121 LQEGGERKVAREEGEKL-AEEKGLLFFETSAKTGENVNDVFLGIGE 165

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  178 bits (455), Expect = 9e-58
 Identities = 55/168 (32%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
            L KVI++G  GVGK++L  Q++  +F   Y+ T    +  K+V  +     + I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +D++  + R VS ++AK   A + N+ Y ETSAK   NV+  F  + +
Sbjct: 119 SDLE--DKRQVSVEEAKN-RADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  179 bits (456), Expect = 1e-57
 Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 11/206 (5%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M  +     +V++ G  GVGK+SL+ ++V   F + Y  TI   +  + +  +  + TLQ
Sbjct: 2   MPEQSN-DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQ 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           I DT G  +F ++           +LV+ V   +S + L    +   I       E+ P 
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKL--IVQIKGSVEDIPV 117

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D      R V  ++A+A  A +    + ETSAK  +NV+  F+ +     +  
Sbjct: 118 MLVGNKCDET---QREVDTREAQA-VAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173

Query: 181 PQEEDYLPDTIDVGGGQQQRSSGCEC 206
                   D    G  ++      +C
Sbjct: 174 MSLN---IDGKRSGKQKRTDRVKGKC 196

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  177 bits (452), Expect = 7e-57
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 7/176 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV+ILG   VGKTSL +Q+V  +FS  Y  T+   + +K V      F L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           +  L  +F  G    VLVY V  + SF  + +  ++             P V++GNK D+
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPVVLVGNKADL 141

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
                R V   + K   A      + E+SA+E    +  F  + +   + E     
Sbjct: 142 S--PEREVQAVEGKK-LAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQ 194

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  175 bits (447), Expect = 1e-56
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F S+   + +     +LVY +   +SF ++   R++ +        E  P +++GNK D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  + R VS  + +A  A +   P+ ETSAK    V+  F  I +
Sbjct: 121 E--SEREVSSSEGRAL-AEEWGCPFMETSAKSKTMVDELFAEIVR 162

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  175 bits (446), Expect = 3e-56
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   +    K+ ILG   VGK+SL  Q+V  +F + Y  TI   F TK +    + + LQ
Sbjct: 1   MPQSKS--RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQ 57

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           + DTAGQ+ +      +    +  +LVY V  +KSF+ +     + L           P 
Sbjct: 58  LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPI 114

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           +++GNK D+     RV+S ++ KA  A   N  + E+SAKE       F  I   A K +
Sbjct: 115 MLVGNKKDLH--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171

Query: 181 PQEED 185
                
Sbjct: 172 GACSQ 176

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  174 bits (445), Expect = 3e-56
 Identities = 50/165 (30%), Positives = 89/165 (53%), Gaps = 6/165 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI   +  K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +  + RVV +++ +       N  + E+SAK   NV   F  + +
Sbjct: 121 E--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  173 bits (441), Expect = 9e-56
 Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + KV++LG  GVGK++L   +             G  +  + +  +    +L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQ 59

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +  + L        D  V+VY V    SF+  +  R + L +A     ++ P +++GNK+
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRA--RQTDDVPIILVGNKS 116

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D+    SR VS  + +A CA   +  + ETSA    NV+A FE + +
Sbjct: 117 DLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVR 160

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  173 bits (440), Expect = 3e-55
 Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 8/176 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  K+V  +     L I DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEE 81

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF ++N +RE+        D ++ P V++GNK D+
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNKCDL 138

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
               +R V  K+A    A    IP+ ETSAK    VE AF  + +   +   ++ +
Sbjct: 139 P---TRTVDTKQAHEL-AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  170 bits (432), Expect = 3e-54
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L +V++LGD GVGKTSL + +  ++  + +   +G D   + +  +    TL + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 68  ERFQSLGV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
           E+        +  +G    V+VY +    SF++ +  R +          ++ P +++GN
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT---HQADHVPIILVGN 119

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           K D+     R VS ++ +A CA   +  + ETSA    NV   FE + +
Sbjct: 120 KADLA--RCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  168 bits (428), Expect = 2e-53
 Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+ I G +GVGK++L+ +++ ++F  +Y  T+ + +   +   +D + +++I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
                    R  +  VLVYD+    SF+ +   +           P+N   +++GNK D+
Sbjct: 89  TIQRE-GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADL 144

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAKNALKNEPQE 183
           D  +SR VS ++ +   A++    ++E SA  G  N+   F  + +   +    +
Sbjct: 145 D--HSRQVSTEEGEK-LATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  177 bits (451), Expect = 2e-53
 Identities = 43/191 (22%), Positives = 72/191 (37%), Gaps = 19/191 (9%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV--------QFEDRLFTL 59
            +KV ++GD   GKTSL+ Q +   F  +   T G + +TK+           E +    
Sbjct: 41  EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
             WD  GQE   +    F   +   +L+ D    ++  N + W          S     P
Sbjct: 101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIEKYGGKS-----P 152

Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            +V+ NK D +   S  + +KK      +  N  +   S K G  VE+  + +    L  
Sbjct: 153 VIVVMNKIDEN--PSYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHP 209

Query: 180 EPQEEDYLPDT 190
           +      L  +
Sbjct: 210 DSIYGTPLAPS 220

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  167 bits (425), Expect = 5e-53
 Identities = 40/166 (24%), Positives = 83/166 (50%), Gaps = 7/166 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            + ILG  G GK++L  +++ ++F ++Y   +   + + E   + +   L++ DTA  + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDT 81

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            ++    +   A   ++VY V+  +SFD+ +++ E   + A  +   + P ++LGNK D+
Sbjct: 82  PRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLGNKLDM 139

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAK 174
                R V++ +  A  A +    +FE SA   F +V+  F    +
Sbjct: 140 A--QYRQVTKAEGVAL-AGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  163 bits (415), Expect = 3e-51
 Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 1   MASRRRMLL-KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR--- 55
           ++S       +V+++G+ GVGK++L N +     S       +G D   + +  +     
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88

Query: 56  LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDP 115
           +  L +W+  G+  +  L     +  D  ++VY +    SF+  +  R +          
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QT 143

Query: 116 ENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           E+ P +++GNK+D+     R VS  + +A CA   +  + ETSA    NV+  FE I + 
Sbjct: 144 EDIPIILVGNKSDLV--RCREVSVSEGRA-CAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200

Query: 176 ALKNEPQEED 185
                  +E 
Sbjct: 201 VRLRRDSKEK 210

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  158 bits (401), Expect = 2e-49
 Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 12/181 (6%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDR---LFTLQIWD 63
             +V+++G+ GVGK++L N +     S       +G D   + +  +     +  L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 64  TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
             G+  +  L     +  D  ++VY +    SF+  +  R +          E+ P +++
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILV 120

Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
           GNK+D+     R VS  + +A  A   +  + ETSA    NV+  FE I +        +
Sbjct: 121 GNKSDLV--RXREVSVSEGRA-XAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177

Query: 184 E 184
           E
Sbjct: 178 E 178

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  142 bits (361), Expect = 3e-43
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 7/175 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++++GD  VGKT L+  +   +    Y  T+  +F +  +++++  F L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y  +D  +L + VN   SFDN++  W  E +             V++G K 
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPE-IKHYID----TAKTVLVGLKV 137

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           D+    S  V++++    C   G + Y E S+     +   FE        N+P 
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKPV 192

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  130 bits (330), Expect = 2e-38
 Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 22/211 (10%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M+  +   +K + +GD  VGKT ++  Y + KF   Y  T+  +F +  V  + ++  L 
Sbjct: 4   MSVSKF--IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLG 60

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  VL + +    S++N+   W  E L + +P    N P
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVP 115

Query: 120 FVVLGNKTD------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
            V++G K D          ++ V++  + +      G   Y E S+K   NV+A F+   
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

Query: 174 KNALKNEPQEEDYLPDTIDVGGGQQQRSSGC 204
           K  L+   ++E            +  R SGC
Sbjct: 176 KVVLQPPRRKEVPRR-------RKNHRRSGC 199

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  126 bits (318), Expect = 4e-37
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M++ R   +K + +GD  VGKT L+  Y +  F   Y  T+  +F +  V        L 
Sbjct: 3   MSASRF--IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    YRGAD  +L + +    S++N++  W  E L   +P      P
Sbjct: 60  LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114

Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
            V++G K D        +D   +  ++  + +      G   Y E S+K   NV+  F+ 
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174

Query: 172 IAKNALK 178
             +  L+
Sbjct: 175 AIRVVLQ 181

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  126 bits (318), Expect = 7e-37
 Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 17/187 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKTSL+  Y    +  +Y  T   D  +  V  + R   LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQD 79

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            F  L    Y   D  +L + V    SF N    W  E +    P      P +++G ++
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE-IRCHCP----KAPIILVGTQS 134

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +D    + V E+ AK          Y E SA    N++  F+      +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 178 KNEPQEE 184
           +    ++
Sbjct: 195 QYSDTQQ 201

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  126 bits (318), Expect = 1e-36
 Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 17/185 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+++GD G GKTSL+  + +  F   Y  T+   +    +Q + +   L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L   FY  A   +L +DV    SFDN+ N W  E +           P +V+G KT
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE-VNHFCK----KVPIIVVGCKT 148

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +       V+  + +    S G + Y E SA+   NV A F+  A+ AL
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208

Query: 178 KNEPQ 182
            +  +
Sbjct: 209 SSRGR 213

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  125 bits (316), Expect = 1e-36
 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 20/189 (10%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           MA+ R+   K++I+GD   GKT L+  +   +F   Y  T+  +    +++ + +   L 
Sbjct: 21  MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAGQE +  L    Y   D  ++ + ++   S +N+   W  E +    P    N P
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHFCP----NVP 131

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
            +++GNK D          +       V  ++ +          Y E SAK    V   F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

Query: 170 ECIAKNALK 178
           E   +  L+
Sbjct: 192 EMATRAGLQ 200

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  124 bits (312), Expect = 6e-36
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 17/180 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N    W  E +    P    N P +++G K 
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 144

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +       ++  +  A     G + Y E SA     ++  F+   +  L
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  122 bits (308), Expect = 2e-35
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + +    SF+N    W  E +    P    N P +++G K 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPE-VRHHCP----NTPIILVGTKL 119

Query: 128 DV----------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D+                 ++  +  A     G + Y E SA     ++  F+   +  L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179

Query: 178 KNEPQ 182
              P 
Sbjct: 180 CPPPV 184

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  121 bits (306), Expect = 6e-35
 Identities = 44/185 (23%), Positives = 75/185 (40%), Gaps = 17/185 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT L+  +   +F   Y  T+  ++   +++ + +   L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
            +  L    Y   D  ++ + V+   S +N+   W  E +    P    N P +++ NK 
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPE-VKHFCP----NVPIILVANKK 139

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
           D          +       V     +A         Y E SAK    V   FE   + AL
Sbjct: 140 DLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199

Query: 178 KNEPQ 182
           +    
Sbjct: 200 QKRYG 204

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  119 bits (299), Expect = 4e-34
 Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 17/189 (8%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
                 ++LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L 
Sbjct: 11  AHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLG 69

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
           ++DTAGQE +  L    Y   D  ++ + V    SF N    W  E L + +P    N P
Sbjct: 70  LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE-LKEYAP----NVP 124

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           F+++G + D          ++    + +  ++ +      G   Y E SA     ++  F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

Query: 170 ECIAKNALK 178
           +      L 
Sbjct: 185 DEAIIAILT 193

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  115 bits (289), Expect = 2e-32
 Identities = 38/190 (20%), Positives = 81/190 (42%), Gaps = 18/190 (9%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           M   + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L 
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N  
Sbjct: 80  LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAA 168
            +++G K+D          +       VS  +        G   Y E SA +   +V   
Sbjct: 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194

Query: 169 FECIAKNALK 178
           F       + 
Sbjct: 195 FHVATLACVN 204

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  114 bits (286), Expect = 3e-32
 Identities = 38/189 (20%), Positives = 81/189 (42%), Gaps = 18/189 (9%)

Query: 2   ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
            S + +  K++++GDS  GKT+L++ +    F   Y  T+  ++ T   + + +   L +
Sbjct: 1   GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSL 59

Query: 62  WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPF 120
           WDT+G   + ++    Y  +D  ++ +D++  ++ D++   W+ E + +  P    N   
Sbjct: 60  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKM 114

Query: 121 VVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAF 169
           +++G K+D          +       VS  +        G   Y E SA +   +V   F
Sbjct: 115 LLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

Query: 170 ECIAKNALK 178
                  + 
Sbjct: 175 HVATLACVN 183

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  112 bits (281), Expect = 2e-31
 Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 18/190 (9%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----------TIGADFLTKEV- 50
           + R +  K++  G    GKT+ + +++  K     K            T+  DFL  ++ 
Sbjct: 9   ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIG 67

Query: 51  QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE-EFLIQ 109
           + +       ++   GQ  + +      RG D  V V D    +   N  + R     + 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 110 ASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
                 ++ P V+  NK D+       +  +  +A    +G  P  E  A EG  V    
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPD----ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183

Query: 170 ECIAKNALKN 179
           + +++  L  
Sbjct: 184 KEVSRLVLAR 193

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  109 bits (273), Expect = 6e-30
 Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 18/187 (9%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GD   GKT+++       +   Y  T+  ++ T  ++ E++   L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
            + ++    Y  +D  +L +D++  ++ D+    WR E ++   P    +   +++G KT
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE-ILDYCP----STRVLLIGCKT 141

Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAKNA 176
           D          +       +S ++  A     G   Y E SA     ++ + F   +   
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC 201

Query: 177 LKNEPQE 183
           L      
Sbjct: 202 LNKPSPL 208

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  110 bits (275), Expect = 6e-30
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 71/224 (31%)

Query: 15  GDSGVGKTSLMNQYVNRK---FSNQYKATIG-ADFLTKEVQFEDRL-------------- 56
           G  G+GK+ L N++V      F   + + +  +DF  + V  +  L              
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 57  FTLQIW-------DTAGQERFQSLGVAFYRGA---------------------------- 81
             + I        D   Q    +    + + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 82  ---------DCCVLVYDV--NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130
                    D  +L  DV   + ++FD+   +      Q         P VV+  K D  
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEG 211

Query: 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               R + +  A  +  SK N+   ETSA+   NV+ AF  + +
Sbjct: 212 --VERYIRD--AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 82.3 bits (203), Expect = 5e-19
 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 17/189 (8%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +    + L+K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L 
Sbjct: 148 IDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLG 206

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFP 119
           +WDTAG E +  L    Y   D  ++ + +    SF ++   W  E +    P    N P
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE-VRHHCP----NTP 261

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
            +++G K D          +       ++  +  A     G + Y E SA     ++  F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

Query: 170 ECIAKNALK 178
           +   +  L 
Sbjct: 322 DEAIRAVLC 330

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 81.6 bits (201), Expect = 8e-19
 Identities = 39/193 (20%), Positives = 78/193 (40%), Gaps = 22/193 (11%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA--DFLTKEVQFEDRLFTLQIWDTAGQ 67
           K++++G SG GK+S M   +   +S      +GA  D     ++F   + TL +WD  GQ
Sbjct: 5   KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNM-TLNLWDCGGQ 62

Query: 68  ERF-----QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE--EFLIQASPSDPENFPF 120
           + F            ++     + V+DV   +   ++  + +  + L + SP    +   
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP----DAKI 118

Query: 121 VVLGNKTDVDGGNSR------VVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
            VL +K D+   + R      ++      +      N+  F TS  +  ++  A+  I  
Sbjct: 119 FVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVC 177

Query: 175 NALKNEPQEEDYL 187
           + + N    +  L
Sbjct: 178 SLIPNMSNHQSNL 190

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.6 bits (170), Expect = 5e-15
 Identities = 31/179 (17%), Positives = 69/179 (38%), Gaps = 25/179 (13%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           +++++G    GK+S+     ++   N+    ++T        ++         QIWD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISN-SSFVNFQIWDFPG 78

Query: 67  QERFQSLGV---AFYRGADCCVLVYDVN--VMKSFDNLNNWREEFLIQASPSDPENFPFV 121
           Q  F          +RG    + V D     M++   L+    +   + +P    +  F 
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSK-AYKVNP----DMNFE 133

Query: 122 VLGNKTDVDGGNSRVVS----EKKAKAWCASKG----NIPYFETSAKEGFNVEAAFECI 172
           V  +K D    + ++ +     ++A    A  G    ++ ++ TS  +  ++  AF  +
Sbjct: 134 VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDH-SIFEAFSKV 191

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 66.8 bits (164), Expect = 4e-14
 Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 25/180 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G  F  +++   +   T+++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNK 126
           RF+S+   + RG    V + D     + D   +   + E          +  P +VLGNK
Sbjct: 79  RFRSMWERYCRGVSAIVYMVD-----AADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 133

Query: 127 TDVDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D+ G  + + + EK      + +  C        +  S KE  N++   + + +++   
Sbjct: 134 RDLPGALDEKELIEKMNLSAIQDREIC-----C--YSISCKEKDNIDITLQWLIQHSKSR 186

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 22/179 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG  F  + + +++    L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y      + V D       D ++   +E  +     + ++   +V  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDST---DKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             G  ++  VS++      K ++W           +SA +G  +    + +     + +
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWS-------IVASSAIKGEGITEGLDWLIDVIKEEQ 182

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 31/178 (17%), Positives = 74/178 (41%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++   +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N     + +N  REE +   +  +  +   +V  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +    N+  +++K      + + W           T A  G  +    + ++      
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWY-------IQATCATSGDGLYEGLDWLSNQLRNQ 163

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           V        +S+       K   W             A  G  +    E +       
Sbjct: 129 VKECMTVAEISQFLKLTSIKDHQWH-------IQACCALTGEGLCQGLEWMMSRLKIR 179

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 28/177 (15%), Positives = 70/177 (39%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       TIG  F  + V++++      +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVEYKN--ICFTVWDVGGQD 84

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N     + +    +E        +  +   +V  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +        +++K      +++ W           T A +G  +    + ++    K
Sbjct: 142 MPNAMPVSELTDKLGLQHLRSRTWY-------VQATCATQGTGLYDGLDWLSHELSK 191

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 22/174 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +    TIG     +E+   +      +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG--SNVEEIVINN--TRFLMWDIGGQE 76

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    +Y   +  ++V D       + ++  REE     +  D      ++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           V        +S+       K   W             A  G  +    E +   
Sbjct: 134 VKECMTVAEISQFLKLTSIKDHQWH-------IQACCALTGEGLCQGLEWMMSR 180

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V++LG    GKTS++ +            T+G     + +Q+++   + ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVG--VNLETLQYKN--ISFEVWDLGGQT 77

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     ++   D  + V D       D +   + E        +      ++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDST---DRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           +    +   ++E+        + W          ++S+K G  +    + + +   + 
Sbjct: 135 LPDAASEAEIAEQLGVSSIMNRTWT-------IVKSSSKTGDGLVEGMDWLVERLREQ 185

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 22/177 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       TIG  F  + V +++     Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN--LKFQVWDLGGLT 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y   D  + V D       D +   + E +      +      VV  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSC---DRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           ++    S  ++        K + W         F+TSA +G  ++ A E + +    
Sbjct: 120 MEQAMTSSEMANSLGLPALKDRKWQ-------IFKTSATKGTGLDEAMEWLVETLKS 169

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 22/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++           T+G  F  K ++     F L IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D         + + + E               ++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSA---DRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           + G  +   + E       ++  W            SA  G ++    + +  +    
Sbjct: 131 LPGALSCNAIQEALELDSIRSHHWR-------IQGCSAVTGEDLLPGIDWLLDDISSR 181

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 28/184 (15%)

Query: 9   LKVIILGDSGVGKTSLMNQY-VNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + V+ LG    GKT+++N+   +   S     TIG  F  ++ +      +  ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQ 77

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEF--LIQASPSDPENFPFVVL 123
            R+++L   +Y+     + V D     S D   +   +EE   L+          P +  
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVID-----SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFF 132

Query: 124 GNKTDVDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
            NK D+     S  VS+       K K W           + A +G  ++   + +    
Sbjct: 133 ANKMDLRDAVTSVKVSQLLCLENIKDKPWH-------ICASDAIKGEGLQEGVDWLQDQI 185

Query: 177 LKNE 180
              +
Sbjct: 186 QTVK 189

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 26/180 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+L+ Q  +   S+    T G  F  K VQ +   F L +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQR 71

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNK 126
           + +    +++   D  + V D     S D        +E             P ++  NK
Sbjct: 72  KIRPYWRSYFENTDILIYVID-----SADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

Query: 127 TDVDGG-NSRVVSEK------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D+     +  ++E       + + W            SA  G  V+     + KN    
Sbjct: 127 QDLLTAAPASEIAEGLNLHTIRDRVWQ-------IQSCSALTGEGVQDGMNWVCKNVNAK 179

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 55.5 bits (133), Expect = 1e-09
 Identities = 30/192 (15%), Positives = 66/192 (34%), Gaps = 25/192 (13%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED--RLFTLQIWDTAGQE 68
           V+++G    GK+S + + V           + +   T     E    L  L + +  GQ 
Sbjct: 2   VLLMGVRRCGKSS-ICKVVFHNMQPLDTLYLES---TSNPSLEHFSTLIDLAVMELPGQL 57

Query: 69  RFQSLGV---AFYRGADCCVLVYDVNVMKSFDNLNNWRE--EFLIQASPSDPENFPFVVL 123
            +          ++     V V D    +  + + N     E+  + +P    +    VL
Sbjct: 58  NYFEPSYDSERLFKSVGALVYVIDSQ-DEYINAITNLAMIIEYAYKVNP----SINIEVL 112

Query: 124 GNKTDVDGGNSRV-----VSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKN 175
            +K D    + +V     + ++  +           + ++ TS  +  ++  AF  I + 
Sbjct: 113 IHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDH-SIYEAFSRIVQK 171

Query: 176 ALKNEPQEEDYL 187
            +      E+ L
Sbjct: 172 LIPELSFLENML 183

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 24/181 (13%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +   Q+  T+     ++E+       T   +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH--PTSEELTIAG--MTFTTFDLGGHI 80

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNK 126
           + + +   +    +  V + D       D+  L   +EE     +     N P ++LGNK
Sbjct: 81  QARRVWKNYLPAINGIVFLVD-----CADHERLLESKEELDSLMTDETIANVPILILGNK 135

Query: 127 TDVDG--GNSRVVSEKKAKAWCASKGNIPY----------FETSAKEGFNVEAAFECIAK 174
            D        R+            KG++            F  S  +       F  +A+
Sbjct: 136 IDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195

Query: 175 N 175
            
Sbjct: 196 Y 196

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 15/136 (11%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQI 61
           +R+     V+ +G    GKT L  + +  ++ +    +I     +   +   +R  +L +
Sbjct: 2   ARKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT--DSSAIYKVNNNRGNSLTL 58

Query: 62  WDTAGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE--EFL---IQASPSDP 115
            D  G E     L   F   A   V V D     S       ++  EFL   +  S +  
Sbjct: 59  IDLPGHESLRFQLLDRFKSSARAVVFVVD-----SAAFQREVKDVAEFLYQVLIDSMALK 113

Query: 116 ENFPFVVLGNKTDVDG 131
            +   ++  NK D+  
Sbjct: 114 NSPSLLIACNKQDIAM 129

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 11/134 (8%)

Query: 3   SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW 62
                   +II G    GKTSL+              +           ++    TL   
Sbjct: 43  GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVR-PTVVSQEP---LSAADYDGSGVTL--V 96

Query: 63  DTAGQERFQSLGVAFYRGA--DCCVLVYDVNVMKSFDNLNNWREEF---LIQASPSDPEN 117
           D  G  + +     + +        L++ V+       L    E     L     S    
Sbjct: 97  DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG 156

Query: 118 FPFVVLGNKTDVDG 131
              ++  NK+++  
Sbjct: 157 IDILIACNKSELFT 170

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 51.4 bits (124), Expect = 1e-08
 Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   N + +   + T      ++E+   +       +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWH--PTSEELAIGN--IKFTTFDLGGHI 78

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPE--NFPFVVLG 124
           + + L   ++   +  V + D     + D    +  R E    A  +  E  + PFV+LG
Sbjct: 79  QARRLWKDYFPEVNGIVFLVD-----AADPERFDEARVEL--DALFNIAELKDVPFVILG 131

Query: 125 NKTDVDGGNSRV-VSEK----KAKAWCASKGNIPY--FETSAKEGFNVEAAFECIAKN 175
           NK D     S   +               +G  P   F  S         AF+ +++ 
Sbjct: 132 NKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 11/126 (8%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +II G    GKTSL+         +  + T+ +        ++    TL   D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTL--VDFPGHVKL 68

Query: 71  QSLGVAFYRGA--DCCVLVYDVNVMKSFDNLNNWREEF---LIQASPSDPENFPFVVLGN 125
           +     + +        L++ V+       L    E     L     S       ++  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 126 KTDVDG 131
           K+++  
Sbjct: 129 KSELFT 134

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 36/207 (17%), Positives = 67/207 (32%), Gaps = 48/207 (23%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
               R++   +  +I G    GK++L+N  + ++     +A I     G   D++ +   
Sbjct: 224 YQHGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQE-----RA-IVSHMPGTTRDYIEECFI 277

Query: 52  FEDRLFTLQIWDTAGQ-------ERFQSLGVAFYR------GADCCVLVYDVNVMKSFDN 98
            +      ++ DTAG        E     G+   R       AD  + + D+   +  D 
Sbjct: 278 HDK--TMFRLTDTAGLREAGEEIEH---EGIR--RSRMKMAEADLILYLLDLGTERLDDE 330

Query: 99  LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158
           L   RE  L  A P       F+ + NK D       ++                    S
Sbjct: 331 LTEIRE--LKAAHP----AAKFLTVANKLDRAANADALIRAIA------DGTGTEVIGIS 378

Query: 159 AKEGFNVEAAFECIAKNALKNEPQEED 185
           A  G  ++   + +       +   E 
Sbjct: 379 ALNGDGIDTLKQHMGDLVKNLDKLHEA 405

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 41/177 (23%), Positives = 59/177 (33%), Gaps = 44/177 (24%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQFEDRLFTLQI 61
           +KV+I G    GK+SL+N    R+      A I     G   D L + +  +     L I
Sbjct: 5   MKVVIAGRPNAGKSSLLNALAGRE-----AA-IVTDIAGTTRDVLREHIHIDG--MPLHI 56

Query: 62  WDTAGQ-------ERFQSLGV----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA 110
            DTAG        ER   +G+         AD  + + D     + D    W E      
Sbjct: 57  IDTAGLREASDEVER---IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFI---- 109

Query: 111 SPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167
               P   P  V+ NK D+ G               +          SA+ G  V+ 
Sbjct: 110 -ARLPAKLPITVVRNKADITG----------ETLGMSEVNGHALIRLSARTGEGVDV 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 29/218 (13%), Positives = 53/218 (24%), Gaps = 73/218 (33%)

Query: 5   RRMLLK------VIILGDSGVGKTSLMNQYVN-----RKFSNQ-YKATIGADFLTKEV-- 50
           R+ LL+      V+I G  G GKT +            K   + +   +      + V  
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 51  --------------QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC-CVL--VYDVNVM 93
                            D    +++   + Q   + L +      +C  VL  V +    
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 94  KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV---DGGNSRVVSEKKAKAWCASKG 150
            +F+                         L  K  +       +  +S            
Sbjct: 260 NAFN-------------------------LSCKILLTTRFKQVTDFLSAATTT------- 287

Query: 151 NIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLP 188
                          +     + K  L   PQ+   LP
Sbjct: 288 --HISLDHHSMTLTPDEVKSLLLK-YLDCRPQD---LP 319

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 32/186 (17%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           +++ G   VGK+S MN  V +     S+   A    D + K ++    +  + + DT G 
Sbjct: 37  IVVAGRRNVGKSSFMNALVGQNVSIVSD--YAGTTTDPVYKSMELHP-IGPVTLVDTPGL 93

Query: 68  ERFQSLG-------VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +    LG          +  ADC +LV D            + ++ +           PF
Sbjct: 94  DDVGELGRLRVEKARRVFYRADCGILVTDSAP-------TPYEDDVVNLFKEM---EIPF 143

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           VV+ NK DV G        ++ K    S+        SA +    +   + I++      
Sbjct: 144 VVVVNKIDVLG-----EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL---- 194

Query: 181 PQEEDY 186
           P +E+ 
Sbjct: 195 PGDEEI 200

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 44/204 (21%), Positives = 80/204 (39%), Gaps = 45/204 (22%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
           A    +L   L+++I+G   VGK++L+N+ +N       +A I     G   D +++E+ 
Sbjct: 234 ADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNED-----RA-IVTDIPGTTRDVISEEIV 287

Query: 52  FEDRLFTLQIWDTAGQERFQS------LGV----AFYRGADCCVLVYDVNVMKSFDNLNN 101
                   +I DTAG  R ++      LG+         AD  + V D +        + 
Sbjct: 288 IRG--ILFRIVDTAGV-RSETNDLVERLGIERTLQEIEKADIVLFVLDAS--------SP 336

Query: 102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
             EE   +      +N  ++V+ NK DV    +    + K         +    + SA +
Sbjct: 337 LDEE--DRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGT------DRHMVKISALK 388

Query: 162 GFNVEAAFECIAKNALKNEPQEED 185
           G  +E   E I +   +   +  D
Sbjct: 389 GEGLEKLEESIYRETQEIFERGSD 412

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 40  TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL 99
           TIG  F  + V++++   +  +WD  GQ++ + L   +++     + V D N     + +
Sbjct: 196 TIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERV 248

Query: 100 NNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131
           N  REE +   +  +  +   +V  NK D+  
Sbjct: 249 NEAREELMRMLAEDELRDAVLLVFANKQDLPN 280

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 53/207 (25%)

Query: 2   ASRRRML---LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-----GA--DFLTKEVQ 51
             +  +L   LKV I+G   VGK+SL+N +         +A I     G   D +  ++ 
Sbjct: 215 KDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSD-----RA-IVTDLPGTTRDVVESQLV 268

Query: 52  FEDRLFTLQIWDTAGQ-------ERFQSLGVAFYR------GADCCVLVYDVNVMKSFDN 98
                  +Q+ DTAG        E+   +GV   R       AD  +L  D         
Sbjct: 269 VGG--IPVQVLDTAGIRETSDQVEK---IGVE--RSRQAANTADLVLLTIDAA------- 314

Query: 99  LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158
              W      Q      ++ P +++ NK D+       V ++   +    +       T+
Sbjct: 315 -TGWTTG--DQEIYEQVKHRPLILVMNKIDL-------VEKQLITSLEYPENITQIVHTA 364

Query: 159 AKEGFNVEAAFECIAKNALKNEPQEED 185
           A +   +++    I +     + Q  D
Sbjct: 365 AAQKQGIDSLETAILEIVQTGKVQAAD 391

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 7/137 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAG 66
           L V + G++G GK+S +N         +  A  G   +T E        +  +  WD  G
Sbjct: 70  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                     +          YD  ++ S         +              F  +  K
Sbjct: 130 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI---SMMKKEFYFVRTK 184

Query: 127 TDVDGGNSRVVSEKKAK 143
            D D  N      +   
Sbjct: 185 VDSDITNEADGEPQTFD 201

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 42/194 (21%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ---FEDRLFTLQIWDTAG- 66
           V+I G   VGK++L+      K            F T+ +    FED  F  QI DT G 
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYP-----FTTRGINVGQFEDGYFRYQIIDTPGL 224

Query: 67  -----QERFQSLGVAFYRGAD-CCVLVY-------DVNVMKSFDNLNN-WREEFLIQASP 112
                 ER +    A         +++Y           ++   +L      EF      
Sbjct: 225 LDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK----- 279

Query: 113 SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SKGNIPYFETSAKEGFNVEAAFE 170
               + PF+V+ NK D       V  E+  K       +  +   + SA +G  ++   E
Sbjct: 280 ----DLPFLVVINKID-------VADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKE 328

Query: 171 CIAKNALKNEPQEE 184
            I K  L+   ++ 
Sbjct: 329 EIIK-TLRPLAEKV 341

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.94
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.92
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.91
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.89
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.87
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.87
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.87
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.86
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.86
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.86
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.84
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.83
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.82
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.81
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.79
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.79
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.79
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.79
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.73
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.72
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.71
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.7
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.67
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.67
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.67
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.66
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.66
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.65
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.64
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.58
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.5
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.44
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.42
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.4
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.39
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.24
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.19
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.14
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.12
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.02
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.01
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.0
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.88
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.68
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.67
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.6
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.5
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.43
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.37
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.3
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.26
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.19
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.09
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.08
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.7
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.65
2xxa_A	433	Signal recognition particle protein; protein trans	97.65
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.61
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.52
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.51
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.51
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.49
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.48
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.48
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.47
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.46
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.45
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.44
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.41
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.41
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.41
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.4
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.39
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.39
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.36
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.36
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.35
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.35
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.34
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.33
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.32
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.32
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.31
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.31
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.3
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.3
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.29
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.29
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.29
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.28
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.28
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.28
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.28
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.28
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.27
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.26
1g6h_A	257	High-affinity branched-chain amino acid transport	97.26
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.25
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.24
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.24
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.24
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.24
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.23
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.23
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.22
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.22
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.22
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.22
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.21
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.21
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.2
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.19
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.19
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.19
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.18
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.18
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.18
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.17
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.17
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.17
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.16
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.16
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.15
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.15
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.15
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.14
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.13
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.13
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.12
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.12
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.12
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.12
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.11
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.11
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.08
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.08
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.08
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.08
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.07
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.07
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.07
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.07
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.05
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.05
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.04
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.03
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.03
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.03
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.02
1via_A	175	Shikimate kinase; structural genomics, transferase	97.02
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.02
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.02
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.01
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.01
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.01
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.01
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.01
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.01
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.01
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.01
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.99
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.99
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.99
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.98
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.97
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.95
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.95
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.95
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.95
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.94
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.94
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.93
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.93
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.93
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.92
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.91
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.91
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.9
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.9
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.9
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.89
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.87
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.87
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.86
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.85
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.85
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.84
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.84
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.84
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.83
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.83
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.82
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.82
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.81
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.8
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.79
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.79
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.77
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.76
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.76
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.74
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.72
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.72
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.72
2og2_A	359	Putative signal recognition particle receptor; nuc	96.71
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.71
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.68
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.67
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.67
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.65
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.63
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.61
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.61
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.6
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.6
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.6
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.59
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.58
3bos_A	242	Putative DNA replication factor; P-loop containing	96.58
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.57
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.57
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.55
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.55
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.55
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.54
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.51
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.5
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.5
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.48
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.46
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.44
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.43
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.43
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.42
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.41
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.39
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.37
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.36
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.36
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.34
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.34
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.33
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.32
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.31
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.29
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.29
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.28
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.28
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.28
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.28
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.27
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.27
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.26
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.26
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.25
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.24
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.23
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.23
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.22
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.21
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.2
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.2
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.19
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.18
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.18
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.17
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.16
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.15
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.14
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.13
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.1
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.06
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.05
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.05
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.05
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.04
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.02
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.01
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.01
3co5_A	143	Putative two-component system transcriptional RES	96.0
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.96
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.95
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.95
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.94
2qgz_A	308	Helicase loader, putative primosome component; str	95.91
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.87
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.87
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.86
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.84
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.79
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.77
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.76
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.75
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.75
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.73
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.73
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.73
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.72
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.72
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.72
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.71
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.69

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.6e-42  Score=243.81  Aligned_cols=194  Identities=36%  Similarity=0.622  Sum_probs=143.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++.+||+|+|.+|+|||||+++|..+.|...+.+|.+.++....+.+.+..+.+.||||+|++++..+...+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            35689999999999999999999999999999999999998999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++++++.+..|+..+......    +.|++||+||+|+...  +.+..+++..++...+ ++|+++||++|.|+
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV  163 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNV  163 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcCH
Confidence            999999999999999999998877543    7899999999999765  7789999999999988 88999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCccccCC----CCCccCCCCCCC
Q 028654          166 EAAFECIAKNALKNEPQEEDYLPDTIDVG----GGQQQRSSGCEC  206 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~c~c  206 (206)
                      +++|+.|++.+...........+....+.    ..+..++++|||
T Consensus       164 ~e~F~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C  208 (216)
T 4dkx_A          164 KQLFRRVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC  208 (216)
T ss_dssp             HHHHHHHHHHC----------------------------------
T ss_pred             HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence            99999999998765554333333332222    223345567767

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=2.7e-38  Score=224.37  Aligned_cols=203  Identities=70%  Similarity=1.149  Sum_probs=154.2

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |++.....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (207)
T 1vg8_A            1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG   80 (207)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred             CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence            66777789999999999999999999999998888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++|+|+|++++.++..+..|+..+..........+.|+++|+||+|+..   +....++...++......+++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~  157 (207)
T 1vg8_A           81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAK  157 (207)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCC
Confidence            999999999999999999999999888776543334789999999999973   45567777888775555899999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCC--CCCccccCCC-C-CccCCCCCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQEED--YLPDTIDVGG-G-QQQRSSGCEC  206 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~~~~--~~~~~~~~~~-~-~~~~~~~c~c  206 (206)
                      +|.|++++|++|.+.+.++....+.  ..+..+.... . ...+++||||
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c  207 (207)
T 1vg8_A          158 EAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC  207 (207)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence            9999999999999999876543211  1233333333 2 2367778977

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=5.2e-37  Score=217.67  Aligned_cols=175  Identities=37%  Similarity=0.663  Sum_probs=152.8

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            55455678999999999999999999999999888888888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|++++.++..+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+++++||+
T Consensus        81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS----TVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSAL  153 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence            99999999999999999999999888766432    7899999999999765  4566777888887776 799999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++.|++++|++|.+.+.+....
T Consensus       154 ~g~gi~~l~~~l~~~i~~~~~~  175 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIKESMSQ  175 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=209.73  Aligned_cols=168  Identities=32%  Similarity=0.535  Sum_probs=144.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4578999999999999999999999887777777765544 456677888889999999999999988899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+......   .+.|+++|+||+|+...  +....+++..++...+ .+++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi  164 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRANV  164 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence            999999999999999999988876542   26799999999999754  4566778888887776 78999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      +++|++|.+.+.+..
T Consensus       165 ~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          165 DKVFFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999999999987753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-35  Score=208.82  Aligned_cols=172  Identities=34%  Similarity=0.651  Sum_probs=141.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45789999999999999999999999888778888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +.+..++...++...+ ++++++||+++.|+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  163 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSENV  163 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CCCH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999998877642    27799999999999754  4566777888887776 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCC
Q 028654          166 EAAFECIAKNALKNEPQEE  184 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~~~  184 (206)
                      +++|++|.+.+.+......
T Consensus       164 ~~l~~~l~~~i~~~~~~~~  182 (223)
T 3cpj_B          164 DKAFEELINTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHHHhhhcc
Confidence            9999999999987766543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.1e-34  Score=201.61  Aligned_cols=179  Identities=64%  Similarity=1.068  Sum_probs=138.2

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCcccccccccccee
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR   79 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~   79 (206)
                      |+......++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++
T Consensus         1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   80 (182)
T 1ky3_A            1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR   80 (182)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred             CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence            66666778999999999999999999999998887788888878877777776 56689999999999999999999999


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      .+|++++|+|++++.++..+..|+..+..........+.|+++|+||+|+.... +....++...++......+++++||
T Consensus        81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~~~~~~~~~Sa  159 (182)
T 1ky3_A           81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSLGDIPLFLTSA  159 (182)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred             cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhcCCCeEEEEec
Confidence            999999999999999999999999998877654444588999999999996432 3456777888877555689999999


Q ss_pred             cCCCCHHHHHHHHHHHHhhcC
Q 028654          160 KEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +++.|++++|++|.+.+.++.
T Consensus       160 ~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          160 KNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999988754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=198.72  Aligned_cols=173  Identities=40%  Similarity=0.700  Sum_probs=149.0

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+......++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   81 (181)
T 3tw8_B            2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG   81 (181)
T ss_dssp             ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred             CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence            55566778999999999999999999999998888888888888888888899988999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|++++.++..+..|+..+.....     +.|+++|+||+|+...  .....++...++...+ .+++++||+
T Consensus        82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  153 (181)
T 3tw8_B           82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK  153 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence            9999999999999999999999998877643     7899999999998754  4566677788888777 799999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCC
Q 028654          161 EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ++.|++++|++|.+.+.+...
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998877544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1e-33  Score=195.97  Aligned_cols=173  Identities=53%  Similarity=0.979  Sum_probs=149.2

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34567999999999999999999999998887888888888888888889988999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +++|+|++++.++..+..|+..+..........+.|+++|+||+|+..   +....+++..++......+++++||+++.
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDAT  159 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence            999999999999999999999988776544445789999999999973   45677788888875556899999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 028654          164 NVEAAFECIAKNALKN  179 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~  179 (206)
                      |++++|++|.+.+.++
T Consensus       160 gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          160 NVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999999998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=6.8e-34  Score=199.96  Aligned_cols=172  Identities=39%  Similarity=0.686  Sum_probs=152.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            34679999999999999999999999998888888888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  165 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN  165 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCCC
Confidence            9999999999999999999988776542    7899999999999765  5667778888888877 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCC
Q 028654          165 VEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~~  183 (206)
                      ++++|++|.+.+.+..+..
T Consensus       166 v~~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          166 VEQSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            9999999999998876643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.2e-34  Score=201.73  Aligned_cols=174  Identities=40%  Similarity=0.688  Sum_probs=122.9

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+...+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (183)
T 2fu5_C            1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   80 (183)
T ss_dssp             --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred             CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence            54555678999999999999999999999888777778888888888888888888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+.+.  +.+..+++..++...+ .+++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  153 (183)
T 2fu5_C           81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAK  153 (183)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCC
Confidence            9999999999999999999999988877643    27899999999999764  4566788888888777 799999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCC
Q 028654          161 EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ++.|++++|++|.+.+.+...
T Consensus       154 ~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=7.4e-34  Score=197.34  Aligned_cols=171  Identities=35%  Similarity=0.645  Sum_probs=147.5

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .+...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34568999999999999999999999998887777888888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +++|+|++++.+++.+..|+..+.....    ++.|+++|+||+|+...  +....+++..++...+ .+++++||+++.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~  160 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGN----PNMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETSAKTAT  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCSSSCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence            9999999999999999999988877643    27899999999999765  4566778888887776 899999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 028654          164 NVEAAFECIAKNALKNEP  181 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~  181 (206)
                      |++++|++|.+.+.+.++
T Consensus       161 gi~~l~~~l~~~~~~~~~  178 (181)
T 2efe_B          161 NVKEIFYEIARRLPRVQP  178 (181)
T ss_dssp             THHHHHHHHHHTCC----
T ss_pred             CHHHHHHHHHHHHHhcCC
Confidence            999999999998876554

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1e-33  Score=197.10  Aligned_cols=170  Identities=30%  Similarity=0.534  Sum_probs=148.8

Q ss_pred             cccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCc
Q 028654            3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   82 (206)
                      ..+.+.++|+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+......+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   91 (183)
T 3kkq_A           13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD   91 (183)
T ss_dssp             -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            3456689999999999999999999999888877778776666 677778888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc-C
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK-E  161 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~  161 (206)
                      ++++|+|++++.++..+..|+..+......   .+.|+++|+||+|+.+.  +.+..++...++...+ .+++++||+ +
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~  165 (183)
T 3kkq_A           92 GFLIVYSVTDKASFEHVDRFHQLILRVKDR---ESFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDP  165 (183)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTS---SCCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSS
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCCC
Confidence            999999999999999999999888765433   27799999999999764  6677888888988887 899999999 9


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      +.|++++|++|.+.+.++
T Consensus       166 ~~~v~~l~~~l~~~i~~q  183 (183)
T 3kkq_A          166 PLNVDKTFHDLVRVIRQQ  183 (183)
T ss_dssp             CBSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhhC
Confidence            999999999999988753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=5e-34  Score=198.07  Aligned_cols=176  Identities=32%  Similarity=0.529  Sum_probs=148.6

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+......++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+......+++.
T Consensus         2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~   80 (181)
T 2fn4_A            2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA   80 (181)
T ss_dssp             --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence            5555667899999999999999999999999887777777766654 667788888899999999999999989999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|++++.++..+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+++++||+
T Consensus        81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  154 (181)
T 2fn4_A           81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAK  154 (181)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCC
Confidence            99999999999999999999998888655432   27799999999999754  4566677777877776 799999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~~  183 (206)
                      ++.|++++|++|.+.+.+.....
T Consensus       155 ~~~gv~~l~~~l~~~~~~~~~~~  177 (181)
T 2fn4_A          155 LRLNVDEAFEQLVRAVRKYQEQE  177 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHHhhccC
Confidence            99999999999999998766543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=3.7e-34  Score=199.72  Aligned_cols=175  Identities=36%  Similarity=0.647  Sum_probs=152.0

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+...+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus         3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   82 (186)
T 2bme_A            3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG   82 (186)
T ss_dssp             -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred             cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence            45555678999999999999999999999998888888888888888888888888999999999999999989999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+
T Consensus        83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~  155 (186)
T 2bme_A           83 AAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSAL  155 (186)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCC
Confidence            9999999999999999999999888776543    27899999999999653  4566677788887776 899999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCCC
Q 028654          161 EGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++.|++++|++|.+.+.++...
T Consensus       156 ~~~gi~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          156 TGENVEEAFVQCARKILNKIES  177 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-34  Score=201.69  Aligned_cols=169  Identities=38%  Similarity=0.637  Sum_probs=149.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999888888888888888888888998899999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +.+..++...++...+ .+++++||+++.|+
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv  176 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNV  176 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988877643    26799999999999753  4566777778877766 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|++|.+.+.++..
T Consensus       177 ~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          177 EKLFLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887544

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.1e-33  Score=197.35  Aligned_cols=171  Identities=28%  Similarity=0.526  Sum_probs=148.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            45799999999999999999999999887777777766554 45678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      +|+|++++.++..+ ..|+..+.....     +.|+++|+||+|+.....+.+..++...++...+...++++||+++.|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence            99999999999987 678877776543     789999999999987655778888999999888844499999999999


Q ss_pred             HHHHHHHHHHHHhhcCCC
Q 028654          165 VEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~  182 (206)
                      ++++|++|.+.+.++++.
T Consensus       175 i~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          175 LNEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             HHHHHHHHHHHHHCSCC-
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999999887653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=9.2e-34  Score=194.91  Aligned_cols=167  Identities=37%  Similarity=0.645  Sum_probs=140.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999988877888888888878888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  155 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKG  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCC
Confidence            9999999999999999998887765432    6799999999999754  4566778888888776 8999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 028654          165 VEAAFECIAKNALK  178 (206)
Q Consensus       165 i~~l~~~i~~~~~~  178 (206)
                      ++++|++|.+.+.+
T Consensus       156 i~~l~~~l~~~~~~  169 (170)
T 1z08_A          156 IEELFLDLCKRMIE  169 (170)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998865

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-33  Score=198.12  Aligned_cols=173  Identities=34%  Similarity=0.599  Sum_probs=149.8

Q ss_pred             ccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecC
Q 028654            2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   81 (206)
                      +......++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (195)
T 1x3s_A            9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA   88 (195)
T ss_dssp             CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred             ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence            34445679999999999999999999999988888888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      |++++|+|++++.++..+..|+..+.....   ..+.|+++|+||+|+..   +....++...++...+ .+++++||++
T Consensus        89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~  161 (195)
T 1x3s_A           89 QGVILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKT  161 (195)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCC
Confidence            999999999999999999999888765432   23789999999999954   4456677778887776 8899999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCC
Q 028654          162 GFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +.|++++|++|.+.+.+.+.
T Consensus       162 ~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          162 CDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             CTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999987544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.3e-34  Score=203.49  Aligned_cols=173  Identities=31%  Similarity=0.551  Sum_probs=141.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            3579999999999999999999999888777777776554 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc------ceecHHHHHHHHHHcCCCcEEEee
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS------RVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      +|+|++++.++..+. .|+..+.....     +.|+++|+||+|+.....      ..+..++...++...+..+++++|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            999999999999886 78888876643     789999999999875411      123677788888887756999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcCCCCC
Q 028654          159 AKEGFNVEAAFECIAKNALKNEPQEE  184 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~~~~~  184 (206)
                      |+++.|++++|++|.+.+.+.....+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~~~~  186 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIKVVLQPPRRKE  186 (212)
T ss_dssp             TTTCTTHHHHHHHHHHHHHCC-----
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhhhcc
Confidence            99999999999999999988765544

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6.4e-34  Score=199.66  Aligned_cols=170  Identities=41%  Similarity=0.656  Sum_probs=146.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      .+..++|+++|.+|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            45689999999999999999999999988777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....+++..++...+ .+++++||+++.|
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g  172 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKNAIN  172 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTTTBS
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence            999999999999999999998877642    27899999999999643  4566778888888776 8999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 028654          165 VEAAFECIAKNALKNEP  181 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~  181 (206)
                      +++++++|.+.+.+.++
T Consensus       173 i~~l~~~l~~~i~~~~~  189 (192)
T 2fg5_A          173 IEELFQGISRQIPPLDP  189 (192)
T ss_dssp             HHHHHHHHHHTCC----
T ss_pred             HHHHHHHHHHHHHhhCC
Confidence            99999999998866544

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.1e-33  Score=198.38  Aligned_cols=169  Identities=38%  Similarity=0.676  Sum_probs=145.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            35689999999999999999999999988877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g  170 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACN  170 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            999999999999999999988877643    27899999999999653  4566778888887776 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 028654          165 VEAAFECIAKNALKNE  180 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~  180 (206)
                      ++++|++|.+.+.++.
T Consensus       171 i~~l~~~l~~~i~~~~  186 (191)
T 2a5j_A          171 VEEAFINTAKEIYRKI  186 (191)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999987754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=8.9e-34  Score=200.30  Aligned_cols=170  Identities=35%  Similarity=0.572  Sum_probs=141.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            45799999999999999999999999887777788877887888888888899999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +.+..+++..++...+..+++++||+++.|+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSSNV  180 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence            99999999999999999988877652    27899999999999754  4566788888888877339999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|++|.+.+.++..
T Consensus       181 ~~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          181 EEAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999987654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.7e-33  Score=194.99  Aligned_cols=167  Identities=37%  Similarity=0.670  Sum_probs=146.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            34579999999999999999999999988877788888888888888888889999999999999999899999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  164 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGEN  164 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            9999999999999999999888776432    7899999999999653  4566778888888776 8999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 028654          165 VEAAFECIAKNALK  178 (206)
Q Consensus       165 i~~l~~~i~~~~~~  178 (206)
                      ++++|++|.+.+.+
T Consensus       165 i~~l~~~l~~~i~~  178 (179)
T 1z0f_A          165 VEDAFLEAAKKIYQ  178 (179)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=199.64  Aligned_cols=170  Identities=37%  Similarity=0.662  Sum_probs=142.2

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34568999999999999999999999988877778888888888888888888999999999999999888999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +|+|+|++++.+++.+..|+..+......    +.|+++|+||+|+...  +....++.+.++......+++++||+++.
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~----~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~  175 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASE----DAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDNF  175 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTTB
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            99999999999999999998887765432    7899999999999754  45667778888877655899999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 028654          164 NVEAAFECIAKNALKN  179 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~  179 (206)
                      |++++|++|.+.+.++
T Consensus       176 gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          176 NVDEIFLKLVDDILKK  191 (192)
T ss_dssp             SHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.5e-33  Score=194.75  Aligned_cols=170  Identities=31%  Similarity=0.449  Sum_probs=146.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4578999999999999999999998888877778877666 677778888899999999999999988999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++++++.+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  156 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGK---VQIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTA  156 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCCCH
Confidence            999999999999999999888776543   26799999999999755  6677888888988887 79999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +++|++|.+.+.+....
T Consensus       157 ~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          157 VDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             HHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHhcCC
Confidence            99999999999876543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=2.9e-33  Score=195.83  Aligned_cols=167  Identities=35%  Similarity=0.660  Sum_probs=147.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            45799999999999999999999999888777888888887788888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi  172 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENINV  172 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence            99999999999999999988877642    27899999999999754  4556778888888777 79999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 028654          166 EAAFECIAKNALKN  179 (206)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (206)
                      +++|++|.+.+.++
T Consensus       173 ~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          173 KQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.6e-33  Score=193.54  Aligned_cols=167  Identities=40%  Similarity=0.667  Sum_probs=145.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      +...++|+++|.+|+|||||+++|.++.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45679999999999999999999999888877778888888788888888889999999999999999889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+.....    ++.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g  155 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN  155 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence            999999999999999999888877643    27899999999999754  4556677788877766 8999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 028654          165 VEAAFECIAKNALK  178 (206)
Q Consensus       165 i~~l~~~i~~~~~~  178 (206)
                      ++++|++|.+.+.+
T Consensus       156 i~~l~~~i~~~~~~  169 (170)
T 1r2q_A          156 VNEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999987643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.5e-33  Score=192.70  Aligned_cols=166  Identities=39%  Similarity=0.697  Sum_probs=141.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999998887788888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+.....    .+.|+++|+||+|+..   +....++...++...+ .+++++||+++.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~  153 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN  153 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence            9999999999999999988877653    2779999999999943   4566777888887776 799999999999999


Q ss_pred             HHHHHHHHHHhhcC
Q 028654          167 AAFECIAKNALKNE  180 (206)
Q Consensus       167 ~l~~~i~~~~~~~~  180 (206)
                      ++|++|.+.+.++.
T Consensus       154 ~l~~~l~~~~~~~~  167 (170)
T 1g16_A          154 EIFFTLAKLIQEKI  167 (170)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7e-33  Score=192.24  Aligned_cols=169  Identities=40%  Similarity=0.679  Sum_probs=139.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .+..++|+++|.+|+|||||+++|.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            356799999999999999999999998875 4667788888877777888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+++.
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  159 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGL  159 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence            9999999999999999999988877653    27899999999999864  5566777788887776 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 028654          164 NVEAAFECIAKNALKNE  180 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~  180 (206)
                      |++++|++|.+.+.+..
T Consensus       160 gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          160 NVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             THHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3.9e-33  Score=194.40  Aligned_cols=167  Identities=25%  Similarity=0.434  Sum_probs=142.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ++..+||+++|.+|+|||||+++|.++.+...+.++ .. .....+.+++..+.+.+|||+|++.+.     +++.+|++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            456899999999999999999999999887766666 33 334777889999999999999998766     77889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|||++++.+++.+..|+..+.....   ..+.|+++|+||+|+.....+.+..+++..++...+..+++++||+++.|
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           90 VFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999998876532   13789999999999975555778888999999888778999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 028654          165 VEAAFECIAKNALKNEP  181 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~  181 (206)
                      ++++|++|.+.+.+...
T Consensus       167 v~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          167 VERVFQDVAQKVVALRK  183 (184)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999887653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.5e-33  Score=192.31  Aligned_cols=165  Identities=33%  Similarity=0.704  Sum_probs=146.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+......+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....     +.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  154 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV  154 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence            99999999999999999988877652     7799999999999754  4456777888887777 79999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028654          166 EAAFECIAKNALK  178 (206)
Q Consensus       166 ~~l~~~i~~~~~~  178 (206)
                      ++++++|.+.+.+
T Consensus       155 ~~l~~~l~~~~~~  167 (168)
T 1z2a_A          155 SEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.5e-33  Score=195.87  Aligned_cols=168  Identities=33%  Similarity=0.565  Sum_probs=142.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+ ......+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            568999999999999999999999887766666663 4445667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+......   .+.|+++|+||+|+..   .....+....++...+ .+++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~  154 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGVD  154 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence            99999999999999999888776443   3789999999999974   4566778888888877 899999999999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 028654          167 AAFECIAKNALKNEPQ  182 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~~  182 (206)
                      ++|++|.+.+.+....
T Consensus       155 ~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A          155 DAFYTLVREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999998776543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.9e-33  Score=192.27  Aligned_cols=166  Identities=37%  Similarity=0.639  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            46899999999999999999999998887788888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-ceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-RVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      |+|++++.++..+..|+..+.....    .+.|+++|+||+|+..... +....++...++...+ .+++++||+++.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  156 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            9999999999999999988877653    2789999999999875422 4556677777777776 79999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|++|.+.+.
T Consensus       157 ~~l~~~l~~~i~  168 (170)
T 1ek0_A          157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988664

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=5.6e-33  Score=190.91  Aligned_cols=165  Identities=38%  Similarity=0.655  Sum_probs=145.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|+|||||+++|.+..+.....++.+.++....+.+.+....+.+|||||.+.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999888778888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    ++.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  156 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAINI  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC----TTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence            99999999999999899888876532    37899999999999754  4566777888887776 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|++|.+.+.
T Consensus       157 ~~l~~~i~~~i~  168 (170)
T 1z0j_A          157 NELFIEISRRIP  168 (170)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=196.51  Aligned_cols=171  Identities=20%  Similarity=0.292  Sum_probs=141.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-ccccceecCcE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~   83 (206)
                      ....++|+++|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ....+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            35679999999999999999999976554434455666677777788899999999999999987664 66677889999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +|+|||++++.++..+..|+..+......   .+.|+++|+||+|+...  +.+..++...++...+ .+++++||+++.
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~  173 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHH  173 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCCCC
Confidence            99999999999999999999888765432   26899999999999764  5567788888888776 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 028654          164 NVEAAFECIAKNALKNEP  181 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~  181 (206)
                      |++++|++|++.+.+...
T Consensus       174 ~v~~lf~~l~~~i~~~~~  191 (195)
T 3cbq_A          174 NTRELFEGAVRQIRLRRG  191 (195)
T ss_dssp             SHHHHHHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHHhcC
Confidence            999999999999876544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.8e-33  Score=199.55  Aligned_cols=173  Identities=22%  Similarity=0.390  Sum_probs=143.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....+||+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            34579999999999999999999999988888788877665 45666778889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCc
Q 028654           85 VLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      |+|||+++++++.. +..|+..+.....     +.|+++|+||+|+...          ..+.+..++...++...+..+
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence            99999999999998 6889988887643     7899999999999752          125677888899999888449


Q ss_pred             EEEeeccCCCC-HHHHHHHHHHHHhhcCCCC
Q 028654          154 YFETSAKEGFN-VEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       154 ~~~~s~~~~~~-i~~l~~~i~~~~~~~~~~~  183 (206)
                      ++++||+++.| ++++|++|++.+.+.....
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~  208 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNKPSPL  208 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence            99999999998 9999999999998766543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=4.3e-33  Score=190.94  Aligned_cols=165  Identities=30%  Similarity=0.540  Sum_probs=141.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888777777766544 4556677788899999999999999888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+......   .+.|+++|+||+|+...  +....++...++......+++++||++|.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  155 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVN  155 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence            99999999999998998888776432   27899999999999754  45667788888887755899999999999999


Q ss_pred             HHHHHHHHHHh
Q 028654          167 AAFECIAKNAL  177 (206)
Q Consensus       167 ~l~~~i~~~~~  177 (206)
                      +++++|.+.+.
T Consensus       156 ~l~~~l~~~i~  166 (167)
T 1c1y_A          156 EIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998774

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-32  Score=194.87  Aligned_cols=167  Identities=34%  Similarity=0.668  Sum_probs=147.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            45799999999999999999999999888777888888887788888888899999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  158 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINV  158 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC----SSCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCCCH
Confidence            99999999999999999988876642    27799999999999764  4566778888888777 79999999999999


Q ss_pred             HHHHHHHHHHHhhc
Q 028654          166 EAAFECIAKNALKN  179 (206)
Q Consensus       166 ~~l~~~i~~~~~~~  179 (206)
                      +++|++|.+.+.+.
T Consensus       159 ~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          159 KQTFERLVDVICEK  172 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-34  Score=200.87  Aligned_cols=170  Identities=35%  Similarity=0.641  Sum_probs=150.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      .++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+......+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            45689999999999999999999999888888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.+++.+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  172 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKENIS  172 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence            999999999999999999998877542    27899999999999654  5667788888888877 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcCC
Q 028654          165 VEAAFECIAKNALKNEP  181 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~  181 (206)
                      ++++|++|.+.+.+..+
T Consensus       173 i~~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          173 VRQAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999887644

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=6.2e-33  Score=190.62  Aligned_cols=166  Identities=21%  Similarity=0.305  Sum_probs=130.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-ccccceecCcEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~vi~   86 (206)
                      .+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999998777666666667777788888899999999999999988776 66667888999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++++++..+..|+..+......   .+.|+++|+||+|+.+.  +....++...++...+ .+++++||+++.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~  155 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR  155 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccC---CCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence            99999999999999999988876542   26799999999999754  5677888888888887 799999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028654          167 AAFECIAKNALKN  179 (206)
Q Consensus       167 ~l~~~i~~~~~~~  179 (206)
                      ++|++|.+.+..+
T Consensus       156 ~l~~~l~~~i~~~  168 (169)
T 3q85_A          156 ELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.5e-33  Score=197.87  Aligned_cols=170  Identities=36%  Similarity=0.618  Sum_probs=139.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999998888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi  175 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLAS----PNIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGENV  175 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988876543    27899999999999653  4556677777877776 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +++|++|.+.+.++...
T Consensus       176 ~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          176 EEAFLKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999998876544

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=5.3e-33  Score=192.55  Aligned_cols=166  Identities=37%  Similarity=0.644  Sum_probs=145.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            34689999999999999999999998888888888888888888888998899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  164 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYNV  164 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHT----TSSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            99999999999999999988876643    27899999999999754  4556677777777776 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028654          166 EAAFECIAKNALK  178 (206)
Q Consensus       166 ~~l~~~i~~~~~~  178 (206)
                      ++++++|.+.+.+
T Consensus       165 ~~l~~~l~~~~~~  177 (179)
T 2y8e_A          165 KQLFRRVAAALPG  177 (179)
T ss_dssp             HHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.7e-33  Score=194.92  Aligned_cols=168  Identities=34%  Similarity=0.657  Sum_probs=146.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45799999999999999999999999888777788888887788888888899999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ ++++++||+++.|+
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  175 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALDSTNV  175 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999988899888865432    37899999999999754  4456677888877776 79999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      +++|++|.+.+.++.
T Consensus       176 ~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          176 ELAFETVLKEIFAKV  190 (193)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.5e-33  Score=193.45  Aligned_cols=172  Identities=33%  Similarity=0.520  Sum_probs=146.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-eEEEEEEeeCCCccccccccccceecCcE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .+..++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+.+ ..+.+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999888777778887778888888876 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      +++|+|++++.+++.+..|+..+.......  .+.| +++|+||+|+.+.  +....++...++...+ ++++++||+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~  157 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEES--ETQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTG  157 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHH--TCCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence            999999999999999989988887653210  0335 8999999999754  4566777888887776 79999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCC
Q 028654          163 FNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~~  181 (206)
                      .|++++|++|.+.+.+.+.
T Consensus       158 ~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          158 DSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             TTHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHhhhh
Confidence            9999999999999987654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=5.4e-33  Score=196.76  Aligned_cols=172  Identities=22%  Similarity=0.442  Sum_probs=142.4

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG   80 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~   80 (206)
                      |+......++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.
T Consensus        21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   99 (205)
T 1gwn_A           21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD   99 (205)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence            444556789999999999999999999999988877777776555 4556677888999999999999999989999999


Q ss_pred             CcEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHc
Q 028654           81 ADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASK  149 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~  149 (206)
                      +|++|+|+|++++.++..+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..++...++...
T Consensus       100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  174 (205)
T 1gwn_A          100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI  174 (205)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence            9999999999999999988 788888876542     7899999999999742          12456778888888887


Q ss_pred             CCCcEEEeecc-CCCCHHHHHHHHHHHHhh
Q 028654          150 GNIPYFETSAK-EGFNVEAAFECIAKNALK  178 (206)
Q Consensus       150 ~~~~~~~~s~~-~~~~i~~l~~~i~~~~~~  178 (206)
                      +..+++++||+ ++.|++++|+.|.+.+++
T Consensus       175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          175 GAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            66789999999 689999999999998875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=6.5e-33  Score=194.03  Aligned_cols=168  Identities=37%  Similarity=0.642  Sum_probs=142.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-cccccceecCcE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADC   83 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~   83 (206)
                      .+..++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3457999999999999999999999998888788888888888888888888999999999999888 778888999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC-
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-  162 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-  162 (206)
                      +++|+|++++.++..+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+++++||+++ 
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~  170 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPN  170 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGG
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCC
Confidence            99999999999999999999988877532   27899999999999654  4566777888887776 79999999999 


Q ss_pred             --CCHHHHHHHHHHHHhh
Q 028654          163 --FNVEAAFECIAKNALK  178 (206)
Q Consensus       163 --~~i~~l~~~i~~~~~~  178 (206)
                        .|++++|++|.+.+.+
T Consensus       171 ~~~~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          171 DNDHVEAIFMTLAHKLKS  188 (189)
T ss_dssp             GGSCHHHHHHHHC-----
T ss_pred             cccCHHHHHHHHHHHHhh
Confidence              9999999999887754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.5e-33  Score=196.20  Aligned_cols=169  Identities=26%  Similarity=0.421  Sum_probs=140.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+...+..++..+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4579999999999999999999999887766666665444 345567788889999999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+......  ..+.|+++|+||+|+..   +....++...++...+ .+++++||+++.|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  158 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYNV  158 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCCH
Confidence            999999999998888887777665322  12679999999999975   3455677777777776 78999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|++|.+.+.++..
T Consensus       159 ~~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          159 KELFQELLTLETRRNM  174 (199)
T ss_dssp             HHHHHHHHHHCSSSCE
T ss_pred             HHHHHHHHHHHhhhhc
Confidence            9999999998866543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=1.9e-32  Score=192.21  Aligned_cols=171  Identities=41%  Similarity=0.667  Sum_probs=146.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeE-EEEEEeCCe---------EEEEEEeeCCCcccccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~   74 (206)
                      ....++|+++|++|+|||||+++|.+..+...+.++.+.++. ...+.+.+.         .+.+.+|||||++.+....
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            456799999999999999999999998887777788777776 556666655         7899999999999999989


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+++.+|++++|+|++++.++..+..|+..+......   .+.|+++|+||+|+...  +....+++..++...+ .++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~  161 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IPY  161 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCE
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CCE
Confidence            99999999999999999999999999999888776532   27799999999999754  4556777888887776 799


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +++||+++.|++++|++|.+.+.++..
T Consensus       162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          162 FETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=2e-32  Score=189.68  Aligned_cols=168  Identities=21%  Similarity=0.385  Sum_probs=138.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+++|.+|+|||||+++|.++.+.. +.++.+.. ....+.+++..+.+.+|||||++.     ..+++.+|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            467999999999999999999999988775 56666544 366677888889999999999876     45778899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|+++++++..+..|+..+...... ..++.|+++|+||+|+.....+.+..+++..++...+..+++++||++|.|+
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGE-GRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCS-SSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            999999999999999887666555432 1237899999999999644446677888888888765589999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|++|.+.+.+...
T Consensus       157 ~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          157 DRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-32  Score=189.96  Aligned_cols=167  Identities=26%  Similarity=0.474  Sum_probs=143.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            3578999999999999999999999988777777776554 456667788899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|+++++++..+. .|+..+.....     +.|+++|+||+|+....          .+.+..++...++...+..++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  169 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  169 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence            999999999999886 78888877643     77999999999997642          135667888888888874589


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhh
Q 028654          155 FETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      +++||+++.|++++|++|.+.++.
T Consensus       170 ~~~Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          170 VECSALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=2e-32  Score=187.64  Aligned_cols=165  Identities=32%  Similarity=0.539  Sum_probs=139.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999999999999887766666665444 4556678888899999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++++++..+..|+..+.......   +.|+++|+||+|+...  +....++...++...+ .+++++||+++.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  155 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD  155 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence            999999999999999999888776432   6799999999999754  4466778888887776 799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|++|.+.+.+
T Consensus       156 ~l~~~l~~~i~~  167 (168)
T 1u8z_A          156 KVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.7e-33  Score=196.15  Aligned_cols=170  Identities=31%  Similarity=0.468  Sum_probs=140.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..+++.+|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4578999999999999999999999988877777776655 556666677789999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....   ..+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|+
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v  174 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHG---KTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARENQLT  174 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence            99999999999999999888875432   237799999999999754  5667778888888887 79999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +++|++|.+.+.+....
T Consensus       175 ~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          175 QGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhhhh
Confidence            99999999999886553

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2.1e-32  Score=188.89  Aligned_cols=169  Identities=25%  Similarity=0.377  Sum_probs=131.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--cccccccceecCcE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADC   83 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~   83 (206)
                      +..++|+++|++|+|||||+++|.+..+.... ++.+.+.....+.+++..+.+.+|||||++.  +......+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            35689999999999999999999988765433 3455666677778888889999999999877  45556677888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +++|+|++++.++..+..|+..+.....   ..+.|+++|+||+|+.+.  +....++...++...+ .+++++||++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~  154 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQH  154 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCC
Confidence            9999999999999999999888766432   237899999999999765  4566677777777776 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 028654          164 NVEAAFECIAKNALKNEP  181 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~  181 (206)
                      |++++|++|.+.+.+...
T Consensus       155 gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          155 NVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             SHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhhc
Confidence            999999999998876543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.4e-32  Score=193.73  Aligned_cols=167  Identities=38%  Similarity=0.691  Sum_probs=146.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++..+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999999888788888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+.....    .+.|+++|+||+|+..   +....++...++...+ ++++++||+++.|+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  169 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNV  169 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTT----TCSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999999999999988877653    2679999999999943   4566677777877776 78999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      +++|++|.+.+.+..
T Consensus       170 ~~l~~~l~~~~~~~~  184 (213)
T 3cph_A          170 NEIFFTLAKLIQEKI  184 (213)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=194.80  Aligned_cols=168  Identities=33%  Similarity=0.576  Sum_probs=135.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            45799999999999999999999999887777788887887888888888899999999999999988889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----CcceecHHHHHHHHHHcCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----NSRVVSEKKAKAWCASKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  161 (206)
                      +|+|++++.++..+..|+..+......    +.|+++|+||+|+...    ..+.+..++...++...+ ++++++||++
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~~----~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~  180 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAHE----TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKD  180 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCCC
Confidence            999999999999999998887765432    6799999999998631    124566777788887776 7999999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 028654          162 GFNVEAAFECIAKNALK  178 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~  178 (206)
                      +.|++++|++|.+.+.+
T Consensus       181 g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          181 GSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CTTHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2e-32  Score=190.81  Aligned_cols=168  Identities=21%  Similarity=0.443  Sum_probs=142.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777777776555 44566788889999999999999999899999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCc
Q 028654           85 VLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++.++..+ ..|+..+.....     +.|+++|+||+|+...          ..+.+..++...++...+..+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence            999999999999988 788887776542     7899999999999742          124567788888888877679


Q ss_pred             EEEeecc-CCCCHHHHHHHHHHHHhh
Q 028654          154 YFETSAK-EGFNVEAAFECIAKNALK  178 (206)
Q Consensus       154 ~~~~s~~-~~~~i~~l~~~i~~~~~~  178 (206)
                      ++++||+ ++.|++++|+.|.+.+++
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            9999999 689999999999998875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=191.42  Aligned_cols=168  Identities=24%  Similarity=0.412  Sum_probs=138.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+..+ .....+++..+.+.+|||||++.+... ..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            34679999999999999999999999988877777776655 455667888899999999999888764 5688999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec-cCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGF  163 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~  163 (206)
                      ++|||+++++++..+..|+..+...... ...+.|+++|+||+|+...  +.+..++...++...+ ++++++|| +++.
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLDFE  171 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSCSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCccc
Confidence            9999999999999999999888776421 0127799999999999654  5567788888888887 79999999 8999


Q ss_pred             CHHHHHHHHHHHHhh
Q 028654          164 NVEAAFECIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~  178 (206)
                      |++++|++|.+.+.+
T Consensus       172 gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          172 HVQHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhh
Confidence            999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.3e-32  Score=193.02  Aligned_cols=171  Identities=27%  Similarity=0.447  Sum_probs=137.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            34578999999999999999999999887776677765444 55667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCc
Q 028654           85 VLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++.++..+. .|+..+.....     +.|+++|+||+|+....          .+.+..++...++...+..+
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS  170 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence            9999999999999986 78888876643     78999999999997531          24566778888888877559


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ++++||+++.|++++|++|.+.+.+...
T Consensus       171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          171 YIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999887544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=3.7e-32  Score=189.48  Aligned_cols=170  Identities=25%  Similarity=0.483  Sum_probs=143.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4578999999999999999999999888777667765444 456677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.++..+. .|+..+.....     +.|+++|+||+|+....          .+.+..++...++...+..++
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  156 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  156 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            999999999999886 68887776543     77999999999997542          134566777888888774599


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +++||++|.|++++|++|.+.+.+.++
T Consensus       157 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          157 LECSALTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             EEecCCCccCHHHHHHHHHHHHhcccc
Confidence            999999999999999999999986554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.8e-32  Score=187.68  Aligned_cols=165  Identities=32%  Similarity=0.510  Sum_probs=140.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|++|+|||||++++.++.+...+.++.+.. ....+.+.+....+.+|||||++.+......+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46899999999999999999999988777666666543 36667788888899999999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  154 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVD  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHH
Confidence            99999999999999998888776542   27899999999998654  4566677777877776 789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      +++++|.+.+.+
T Consensus       155 ~l~~~l~~~~~~  166 (167)
T 1kao_A          155 ELFAEIVRQMNY  166 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.6e-32  Score=185.73  Aligned_cols=164  Identities=24%  Similarity=0.350  Sum_probs=119.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||+++|.+..... ..++.+..+ ...+.+++..+.+.+||+||++.+......+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            5799999999999999999998766442 233333333 45667888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|++++++++.+..|+..+.....   ..+.|+++|+||+|+.+.  +....++...++...+ .+++++||++|.|+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  153 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQ---TDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA  153 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence            999999999999999888876432   237899999999999865  5677778888888777 8999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028654          168 AFECIAKNALKN  179 (206)
Q Consensus       168 l~~~i~~~~~~~  179 (206)
                      +|++|.+.+.+.
T Consensus       154 l~~~l~~~~~~~  165 (166)
T 3q72_A          154 LFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=6.5e-32  Score=191.02  Aligned_cols=164  Identities=32%  Similarity=0.597  Sum_probs=142.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeE-----------------------------
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-----------------------------   56 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   56 (206)
                      ...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+.+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999998887888888877877777776654                             


Q ss_pred             --------EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           57 --------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        57 --------~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                              ..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+....      +.|+++|+||+|
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~D  158 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKID  158 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECTT
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECCC
Confidence                    889999999999999999999999999999999999999999999988887654      479999999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                       ...  +....+++..++...+ .+++++||+++.|++++|++|.+.+.++
T Consensus       159 -~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          159 -KNK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             -CC---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             -ccc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence             322  5667788888888876 7999999999999999999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=3.5e-32  Score=189.69  Aligned_cols=169  Identities=31%  Similarity=0.525  Sum_probs=143.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      .+..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34579999999999999999999999887776666665444 45566788888999999999999988889999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+.......   +.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  167 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRAN  167 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCC
Confidence            99999999999999999999888776432   6799999999999754  4566778888887776 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 028654          165 VEAAFECIAKNALKNE  180 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~  180 (206)
                      ++++|++|.+.+.+++
T Consensus       168 i~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          168 VDKVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.1e-33  Score=199.75  Aligned_cols=170  Identities=42%  Similarity=0.697  Sum_probs=143.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe----------EEEEEEeeCCCccccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~   75 (206)
                      +..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+.          .+.+.||||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45799999999999999999999998887777777777777777766665          78999999999999998889


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .+++.+|++|+|+|++++.++..+..|+..+....   ...+.|+++|+||+|+...  +....++...++...+ .+++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~  176 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYF  176 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-CcEE
Confidence            99999999999999999999988888877654322   1237899999999999754  4566778888888776 7999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          156 ETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ++||+++.|++++|++|.+.+.++..
T Consensus       177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          177 ETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998877543

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1e-31  Score=189.67  Aligned_cols=168  Identities=25%  Similarity=0.508  Sum_probs=142.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            345789999999999999999999999888777777766654 3467788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCc
Q 028654           85 VLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~  153 (206)
                      ++|+|++++.++..+ ..|...+.....     +.|+++|+||+|+.....          +.+..++...++...+..+
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  175 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG  175 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence            999999999999988 678777766542     779999999999976421          3456677788888877558


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ++++||+++.|++++|++|.+.+++
T Consensus       176 ~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          176 YLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.4e-31  Score=189.88  Aligned_cols=170  Identities=25%  Similarity=0.484  Sum_probs=137.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45689999999999999999999998887776677665553 34667888899999999999999998999999999999


Q ss_pred             EEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.++..+ ..|+..+.....     +.|+++|+||+|+.....          +.+..++...++...+..++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY  176 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence            99999999999888 678777766542     789999999999975411          23556677778877775589


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +++||+++.|++++|++|.+.+++...
T Consensus       177 ~~~SA~~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          177 LECSAKTKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999886543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=3.2e-31  Score=185.48  Aligned_cols=170  Identities=32%  Similarity=0.532  Sum_probs=132.8

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      +.+..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+|||||++.+...+..++..+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            345689999999999999999999999887766666654433 4566778888899999999999999989999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +++|+|+++..++..+..|+..+......   .+.|+++|+||+|+..   +....+++..++...+ ++++++||+++.
T Consensus        96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  168 (190)
T 3con_A           96 FLCVFAINNSKSFADINLYREQIKRVKDS---DDVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQ  168 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTC---SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCT
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence            99999999999999999998888776532   2679999999999976   3456777888888777 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcCC
Q 028654          164 NVEAAFECIAKNALKNEP  181 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~~  181 (206)
                      |+++++++|.+.+.+...
T Consensus       169 gi~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          169 GVEDAFYTLVREIRQYRM  186 (190)
T ss_dssp             THHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999999877544

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1e-31  Score=190.44  Aligned_cols=169  Identities=23%  Similarity=0.344  Sum_probs=134.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-cccccccceecCcE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADC   83 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~   83 (206)
                      ...+||+++|.+|+|||||+++|.+.... ....++++.++....+.+++..+.+.+|||+|.+. +......+++.+|+
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            45799999999999999999999964431 22234456666677778889889999999999776 44456677888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +|+|||++++.+++.+..|...+.....   ..+.|+++|+||+|+...  +.+..++...++...+ ++++++||++|.
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk~g~  188 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQH  188 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence            9999999999999999888877754321   127899999999999753  4566677777777766 799999999999


Q ss_pred             CHHHHHHHHHHHHhhcC
Q 028654          164 NVEAAFECIAKNALKNE  180 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~~  180 (206)
                      |++++|++|++.+....
T Consensus       189 ~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          189 NVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886544

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=4e-31  Score=180.72  Aligned_cols=164  Identities=32%  Similarity=0.557  Sum_probs=139.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|.+|+|||||++++.+..+...+.++.+.. ....+.+.+..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            35899999999999999999999988776666665443 35566678888899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++..++..+..|+..+......   .+.|+++|+||+|+..   +....++...++...+ .+++++|++++.|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  153 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVE  153 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTC---SCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence            99999999999999998888776542   2679999999999976   3456677778877776 799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      +++++|.+.+.+
T Consensus       154 ~l~~~l~~~~~~  165 (166)
T 2ce2_X          154 DAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=191.25  Aligned_cols=169  Identities=33%  Similarity=0.544  Sum_probs=122.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++++
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            468999999999999999999999887766666664443 4566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcEE
Q 028654           87 VYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      |+|++++.++..+. .|+..+.....     +.|+++|+||+|+.....          +.+..++...++...+..+++
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  186 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYL  186 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEE
Confidence            99999999999886 78888776542     789999999999976421          245667778888888745999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          156 ETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ++||++|.|++++|++|.+.+.+.+.
T Consensus       187 ~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          187 ECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             EecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8.1e-32  Score=189.50  Aligned_cols=167  Identities=26%  Similarity=0.465  Sum_probs=141.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++. ...+..++..+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4579999999999999999999999988777777776544 45567788889999999999887 667778889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC-C
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-N  164 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~  164 (206)
                      +|+|++++++++.+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+++++||+++. |
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~g  177 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGN  177 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCcCCcC
Confidence            999999999999999998888776432   27899999999999764  4566778888887776 899999999999 9


Q ss_pred             HHHHHHHHHHHHhhcC
Q 028654          165 VEAAFECIAKNALKNE  180 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~  180 (206)
                      ++++|++|.+.+.++.
T Consensus       178 i~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          178 ITEIFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            9999999999987754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=7.4e-32  Score=192.70  Aligned_cols=172  Identities=31%  Similarity=0.504  Sum_probs=142.0

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCc
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   82 (206)
                      .+...++|+++|.+|+|||||+++|.+..+...+.++.+........... +..+.+.+|||||++.+......++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            34568999999999999999999999888777777777766666555443 34488999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      ++|+|+|+++..++..+..|+..+......    +.|+++|+||+|+...  .....+....++...+ .+++++||++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g  159 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTA  159 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence            999999999999999999999988877643    5799999999999764  4566677777766665 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCC
Q 028654          163 FNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~~~  182 (206)
                      .|++++|++|.+.+.+....
T Consensus       160 ~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          160 HNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             BTTTHHHHHHHHHHHCCTTC
T ss_pred             CCHHHHHHHHHHHHhccccc
Confidence            99999999999999876554

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.9e-34  Score=201.82  Aligned_cols=168  Identities=40%  Similarity=0.720  Sum_probs=137.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            45679999999999999999999999888888788888888888888999889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ .+++++||+++.|
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g~g  182 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN  182 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---HH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence            999999999999999999888865433    37899999999999764  4444455666777766 8899999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028654          165 VEAAFECIAKNALKN  179 (206)
Q Consensus       165 i~~l~~~i~~~~~~~  179 (206)
                      ++++|++|.+.+.++
T Consensus       183 v~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          183 VEQSFMTMAAEIKKR  197 (199)
T ss_dssp             HHHHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998877553

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=2.4e-32  Score=193.72  Aligned_cols=171  Identities=27%  Similarity=0.486  Sum_probs=109.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccccceeeEEEEEEeCCe--EEEEEEeeCCCccccccccccceecC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~   81 (206)
                      ...++|+++|.+|+|||||+++|.+.  .+...+.++.+.++....+.+.+.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            35689999999999999999999988  666677777776777777888876  88999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC-CCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG-GNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      |++++|+|++++.++..+..|+..+...... ...+.|+++|+||+|+.. .  +.+..+++..++...+ .+++++||+
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~  173 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPD-RERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSAN  173 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSC-TTSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC-
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcc-cccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccC
Confidence            9999999999999999999999988876531 012789999999999976 3  5566788888888877 899999999


Q ss_pred             C-CCCHHHHHHHHHHHHhhcC
Q 028654          161 E-GFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       161 ~-~~~i~~l~~~i~~~~~~~~  180 (206)
                      + +.|++++|++|.+.+.+..
T Consensus       174 ~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             ------CHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHH
Confidence            9 9999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=1.6e-31  Score=189.13  Aligned_cols=165  Identities=25%  Similarity=0.466  Sum_probs=138.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.++.+...+.++.+ ......+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4579999999999999999999999888777666664 444566677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.++..+. .|+..+.....     +.|+++|+||+|+.....          +....++...++...+..++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence            999999999999986 78888776642     789999999999976421          22566778888888886789


Q ss_pred             EEeeccCCCCHHHHHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      +++||++|.|++++|++|.+.+
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998864

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=6.3e-32  Score=193.50  Aligned_cols=169  Identities=28%  Similarity=0.604  Sum_probs=144.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|+.+.+...+.++.+.+.......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            45679999999999999999999877766667778888888888888888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCC
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN  164 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  164 (206)
                      ++|+|++++.++..+..|+..+.....     +.|+++|+||+|+.+...    .++...++...+ .+++++||+++.|
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~----~~~~~~~~~~~~-~~~~~~Sa~~~~g  161 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNYN  161 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSS----CGGGCCHHHHHT-CEEEECBGGGTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCccccccc----cHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence            999999999999999999999988753     789999999999976421    123344555555 7999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCC
Q 028654          165 VEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       165 i~~l~~~i~~~~~~~~~~~  183 (206)
                      ++++|++|.+.+...+...
T Consensus       162 i~~l~~~l~~~l~~~~~~~  180 (221)
T 3gj0_A          162 FEKPFLWLARKLIGDPNLE  180 (221)
T ss_dssp             TTHHHHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHHHhCcccc
Confidence            9999999999998876653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.9e-31  Score=182.59  Aligned_cols=166  Identities=27%  Similarity=0.418  Sum_probs=136.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||++.+......++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            358999999999999999999999887766666665444 3455667778899999999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.+++.+..|+..+......  .++.|+++|+||+|+...  +....++...++...+ .+++++||+++.|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~  155 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK  155 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence            99999999998888888877765421  126799999999999754  4455666777777766 799999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|++|.+.+.+
T Consensus       156 ~l~~~l~~~~~~  167 (172)
T 2erx_A          156 ELFQELLNLEKR  167 (172)
T ss_dssp             HHHHHHHHTCCS
T ss_pred             HHHHHHHHHHhh
Confidence            999999986543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=4.6e-32  Score=188.43  Aligned_cols=167  Identities=29%  Similarity=0.509  Sum_probs=125.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45689999999999999999999998877666666544332 23345566678899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc--------ceecHHHHHHHHHHcCCCcEEE
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--------RVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +|+|++++.+++.+. .|+..+.....     +.|+++|+||+|+.+...        ..+..++...++...+..++++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  159 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE  159 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence            999999999999886 68888876642     779999999999875421        1236677788888777459999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhh
Q 028654          157 TSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      +||+++.|++++|++|.+.+++
T Consensus       160 ~Sa~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          160 CSSKSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSC
T ss_pred             EECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=1.2e-31  Score=188.50  Aligned_cols=167  Identities=21%  Similarity=0.305  Sum_probs=130.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-----------ccccceeeEEEEE-EeCCeEEEEEEeeCCCcccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~~   72 (206)
                      ....+||+++|.+|+|||||++.+.+.. ...+           .++.+.++....+ .+++..+.+.+|||||++.+..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            3568999999999999999997766543 3332           2233333333333 4566788999999999999999


Q ss_pred             ccccceecCcEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHH
Q 028654           73 LGVAFYRGADCCVLVYDVN------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC  146 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~  146 (206)
                      .+..+++.+|++|+|+|++      +.+++..+..|+..+.     ....+.|+++|+||+|+.+.    ...+++..++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~  160 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDA----LPVEMVRAVV  160 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTC----CCHHHHHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccc----cCHHHHHHHH
Confidence            9999999999999999999      4566666667766652     12247899999999999753    6677888888


Q ss_pred             HHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          147 ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       147 ~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ...+..+++++||+++.|++++|++|.+.+.++..
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            87773399999999999999999999999887654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=2.8e-30  Score=181.92  Aligned_cols=174  Identities=18%  Similarity=0.298  Sum_probs=128.3

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCc
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   82 (206)
                      ......+|+|+|.+|+|||||+++|.+..+.. .+.++.+...  ..+..  ..+.+.+|||||++.+...+..+++.+|
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   88 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEK--GRVAFTVFDMGGAKKFRGLWETYYDNID   88 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEe--CCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence            34568899999999999999999999998876 6677766333  33333  3478999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCC----CCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-HHHHcCCCcEEEe
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASP----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCASKGNIPYFET  157 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  157 (206)
                      ++|+|+|+++++++..+..|+..+......    ....+.|+++|+||+|+..........+.... .......++++++
T Consensus        89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (199)
T 4bas_A           89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFAS  168 (199)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEEC
T ss_pred             EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEe
Confidence            999999999999999998888877654110    01126799999999999865221111111111 1112234789999


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcCC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ||+++.|++++|++|.+.+.+...
T Consensus       169 Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          169 NGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             eCCCccCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=6.8e-30  Score=179.11  Aligned_cols=168  Identities=23%  Similarity=0.359  Sum_probs=131.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-cccccccceecCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGAD   82 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d   82 (206)
                      +..++|+++|.+|+|||||+++|.+..  +... .++++.+.....+.+++..+.+.+|||+|.+. .......+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456899999999999999999998643  2332 33455666677778889889999999999765 4455667778899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      ++++|||++++++++.+..|+..+......   .+.|+++|+||+|+...  +.+..++...++...+ .+++++||++|
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~---~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g  156 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQT---EDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQ  156 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccC
Confidence            999999999999999998888877654321   26799999999998653  4556667777766665 78999999999


Q ss_pred             CCHHHHHHHHHHHHhhcC
Q 028654          163 FNVEAAFECIAKNALKNE  180 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~  180 (206)
                      .|++++|++|.+.+....
T Consensus       157 ~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          157 HNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhc
Confidence            999999999999886543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=3.6e-31  Score=185.03  Aligned_cols=163  Identities=23%  Similarity=0.384  Sum_probs=126.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+.  .+...  .+.+.+|||||++.+...+..++..+|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            45799999999999999999999998887667777665553  23333  478899999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~  161 (206)
                      +|+|+++++++..+..|+..+.....   ..+.|+++|+||+|+....    ..+++..... .   ....+++++||++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~  168 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGAL----DEKELIEKMNLSAIQDREICCYSISCKE  168 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCC----CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence            99999999999998888877754321   1278999999999997642    1222222111 1   1235799999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      +.|++++|++|.+.+.++
T Consensus       169 g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          169 KDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             CTTHHHHHHHHHHTCC--
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999877543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.9e-31  Score=182.85  Aligned_cols=166  Identities=18%  Similarity=0.261  Sum_probs=124.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.++.+. .+.++.+..  ...+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45789999999999999999999988765 455555433  33444554  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (206)
                      +|+|+++++++..+..|+..+.....   ..+.|+++|+||+|+...    ...+++......    ....+++++||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  161 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCALT  161 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC----CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence            99999999999999888888765421   127899999999999753    223344433321    1236899999999


Q ss_pred             CCCHHHHHHHHHHHHhhcCCCC
Q 028654          162 GFNVEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~~~~~  183 (206)
                      +.|+++++++|.+.+.+..+.+
T Consensus       162 g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          162 GEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             TBTHHHHHHHHHHHHCC-----
T ss_pred             CcCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999887766543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=7.2e-30  Score=175.55  Aligned_cols=162  Identities=20%  Similarity=0.331  Sum_probs=125.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||+++|.++.+. .+.++.+  .....+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            34689999999999999999999988764 3445544  3344455553  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~  161 (206)
                      +|+|++++.++..+..|+..+.....   ..+.|+++|+||+|+.+..    ..+++..... .   ...++++++||++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAM----TSSEMANSLGLPALKDRKWQIFKTSATK  152 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCC----CHHHHHHHhCchhccCCceEEEECcCCC
Confidence            99999999999888888777654321   1378999999999997642    1222222211 1   1235899999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      +.|++++|++|.+.+.++
T Consensus       153 ~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          153 GTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHhhc
Confidence            999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=4.2e-30  Score=179.24  Aligned_cols=162  Identities=19%  Similarity=0.338  Sum_probs=127.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||++++.+.. ...+.++.+  .....+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            457999999999999999999999887 555566655  3344455554  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (206)
                      +|+|++++.++..+..|+..+.....   ..+.|+++|+||+|+...    ...+++......    ....+++++||++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  163 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEER---LAGATLLIFANKQDLPGA----LSCNAIQEALELDSIRSHHWRIQGCSAVT  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChh---cCCCcEEEEEeCccCCCC----CCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence            99999999999998888877765321   227899999999999764    222333332211    1236899999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      +.|+++++++|.+.+.++
T Consensus       164 ~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          164 GEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999998765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=1.9e-30  Score=177.29  Aligned_cols=159  Identities=16%  Similarity=0.312  Sum_probs=120.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|+|||||++++.++.+.. +.++.+  .....+...  .+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877653 455554  333344443  378899999999999888888999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccCCCC
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKEGFN  164 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~~~~  164 (206)
                      |+++++++..+..|+..+....   ...+.|+++|+||+|+.+..    ..+++..... .   ....+++++||+++.|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  148 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSGDG  148 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             ECCCHHHHHHHHHHHHHHHhch---hhcCCeEEEEEECcCCcCCC----CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence            9999999998888887775432   12377999999999997642    2222222111 1   1235799999999999


Q ss_pred             HHHHHHHHHHHHhhc
Q 028654          165 VEAAFECIAKNALKN  179 (206)
Q Consensus       165 i~~l~~~i~~~~~~~  179 (206)
                      ++++|++|.+.+.++
T Consensus       149 i~~l~~~l~~~i~~~  163 (164)
T 1r8s_A          149 LYEGLDWLSNQLRNQ  163 (164)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999987643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.5e-29  Score=177.11  Aligned_cols=158  Identities=21%  Similarity=0.298  Sum_probs=124.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||++++.++.+. .+.++.+.  ....+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            34679999999999999999999988764 34445443  345566666  78999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-----------CCCcE
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-----------GNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-----------~~~~~  154 (206)
                      +|+|++++++++.+..|+..+.....   ..+.|+++|+||+|+...    ...+++..+....           ...++
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEV  168 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC----CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC----CCHHHHHHHhCCccccccccccccceEEE
Confidence            99999999999999888888765321   137899999999999752    4455555544321           34679


Q ss_pred             EEeeccCCCCHHHHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      +++||++|.|++++|++|.+.
T Consensus       169 ~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          169 FMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEeECCcCCCHHHHHHHHHhh
Confidence            999999999999999999764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=7.7e-30  Score=179.67  Aligned_cols=158  Identities=18%  Similarity=0.278  Sum_probs=119.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||+++|.+..+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            34689999999999999999999987754 344554443  34555666  78999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----------------
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----------------  149 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----------------  149 (206)
                      +|+|+++++++..+..|+..+.....   ..+.|+++|+||+|+..    ....+++..+....                
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE----AISEERLREMFGLYGQTTGKGSVSLKELNA  170 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc----cCCHHHHHHHhCcccccccccccccccccC
Confidence            99999999999999888888765321   23789999999999975    34556666655421                


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          150 GNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ...+++++||++|.|++++|++|.+.
T Consensus       171 ~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          171 RPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            23679999999999999999999864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=3.7e-30  Score=180.48  Aligned_cols=161  Identities=16%  Similarity=0.310  Sum_probs=119.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||+++|.++.+. .+.++.+  .....+...+  +.+.+|||||++.+...+..+++.+|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            45789999999999999999999987765 3344444  3344444544  78999999999999988888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~  161 (206)
                      +|+|+++++++..+..|+..+.....   ..+.|+++|+||+|+....    ..+++..... .   ....+++++||++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA~~  174 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDE---LRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCATQ  174 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccc---cCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcCCC
Confidence            99999999999998888887764321   2378999999999997542    2222222111 1   1235799999999


Q ss_pred             CCCHHHHHHHHHHHHhh
Q 028654          162 GFNVEAAFECIAKNALK  178 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~  178 (206)
                      +.|++++|++|.+.+.+
T Consensus       175 g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          175 GTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             TBTHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHHHHhc
Confidence            99999999999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.9e-29  Score=175.59  Aligned_cols=164  Identities=18%  Similarity=0.287  Sum_probs=127.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC-CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ...++|+++|.+|+|||||+++|.+.. +...+.++.+  .....+.+.+  ..+.+|||||++.+...+..+++.+|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            457899999999999999999999877 4555555554  4455555554  6889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--Hc--CCCcEEEeecc
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK--GNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~s~~  160 (206)
                      ++|+|++++.++..+..|+..+...... ...+.|+++|+||+|+...    ...+++..+..  ..  ...+++++||+
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  169 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDAI  169 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccCC
Confidence            9999999999999988888887664321 0137899999999999753    33445555442  21  24689999999


Q ss_pred             CCCCHHHHHHHHHHHHhh
Q 028654          161 EGFNVEAAFECIAKNALK  178 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~  178 (206)
                      ++.|++++|++|.+.+.+
T Consensus       170 ~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          170 KGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTBTHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999987643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=4.3e-30  Score=178.54  Aligned_cols=162  Identities=23%  Similarity=0.349  Sum_probs=122.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|++|+|||||+++|.+..+. .+.++.+  .....+.+++  +.+.+|||||++.+...+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45789999999999999999999987543 3344544  3334455554  78899999999999888888999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~  161 (206)
                      +|+|+++++++..+..|+..+....   ...+.|+++|+||+|+....    ..+++......    ....+++++||++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALT  161 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccCC----CHHHHHHHhCchhccCCceEEEEccCCC
Confidence            9999999999998888877765432   12378999999999997642    22333222111    1235799999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      |.|++++|++|.+.+.++
T Consensus       162 g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          162 GEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             CTTHHHHHHHHHHTC---
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999877553

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.4e-28  Score=173.29  Aligned_cols=168  Identities=36%  Similarity=0.671  Sum_probs=141.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......++..+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            34689999999999999999999999887777788877888888889998899999999999998888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|+++..++..+..|+..+.....    .+.|+++|+||+|+...  +....++...++...+ +.++++|++++.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i  155 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV  155 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence            99999999888888888877655422    26799999999999754  4455667777877776 78999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      ++++++|.+.+.+..
T Consensus       156 ~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          156 EEAFKNILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999887653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=9.4e-30  Score=177.91  Aligned_cols=163  Identities=17%  Similarity=0.282  Sum_probs=125.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|+|||||++++.++.+.. +.++.+  .....+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            457999999999999999999998877643 445544  3334444543  78899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-H---cCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-S---KGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~s~~~  161 (206)
                      +|+|+++++++..+..|+..+....   ...+.|+++|+||+|+....    ..+++..... .   ....+++++||++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  167 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDED---ELRKSLLLIFANKQDLPDAA----SEAEIAEQLGVSSIMNRTWTIVKSSSKT  167 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCS---TTTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhh---hcCCCeEEEEEECCCCcCCC----CHHHHHHHhChhhccCCceEEEEccCCC
Confidence            9999999999988888877765432   22378999999999997642    1222222111 1   1135799999999


Q ss_pred             CCCHHHHHHHHHHHHhhcC
Q 028654          162 GFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~~  180 (206)
                      +.|+++++++|.+.+.++.
T Consensus       168 ~~gi~~l~~~l~~~i~~~~  186 (189)
T 2x77_A          168 GDGLVEGMDWLVERLREQG  186 (189)
T ss_dssp             CTTHHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHhcc
Confidence            9999999999999987754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=6.1e-30  Score=177.73  Aligned_cols=159  Identities=19%  Similarity=0.281  Sum_probs=122.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+.+  ..+.+|||||++.+...+..+++.+|++
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   92 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFV   92 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            34578999999999999999999999887 44455554433  3444554  7899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeecc
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~  160 (206)
                      ++|+|+++++++..+..|+..+.....   ..+.|+++|+||+|+...    ...+++......    ...++++++||+
T Consensus        93 i~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  165 (181)
T 2h17_A           93 IVVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCAL  165 (181)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC----CCHHHHHHHhCcccccCCceEEEEccCC
Confidence            999999999999998888877765321   127899999999999753    223333333211    123589999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 028654          161 EGFNVEAAFECIAKN  175 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~  175 (206)
                      ++.|++++|++|.+.
T Consensus       166 ~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          166 TGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTBTHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHhh
Confidence            999999999999764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=4.1e-30  Score=178.76  Aligned_cols=162  Identities=19%  Similarity=0.326  Sum_probs=122.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|+|||||++++.++.+ ..+.++.+..  ...+.+.+  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4679999999999999999999998766 4445555433  34445554  78999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----CCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~  161 (206)
                      +|+|++++.++..+..|+..+....   ...+.|+++|+||+|+.+.    ...+++.......    ...+++++||++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~  163 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGA----LSASEVSKELNLVELKDRSWSIVASSAIK  163 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTC----CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence            9999999999998888887775432   1237899999999999754    2233333332211    124799999999


Q ss_pred             CCCHHHHHHHHHHHHhhc
Q 028654          162 GFNVEAAFECIAKNALKN  179 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~~~~  179 (206)
                      +.|+++++++|.+.+.++
T Consensus       164 ~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          164 GEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhc
Confidence            999999999999988764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1e-28  Score=186.88  Aligned_cols=168  Identities=24%  Similarity=0.470  Sum_probs=141.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||++++.+..+...+.++++..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3468999999999999999999998888777667665444 556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.++..+. .|+..+.....     +.|+++|+||+|+....          .+.+..++...++...+..++
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  306 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  306 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence            999999999998886 68777766543     77999999999986531          145667788888888875599


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +++||++|.|++++|++|.+.+++.
T Consensus       307 ~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          307 LECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             EEecCCCCcCHHHHHHHHHHHHhcC
Confidence            9999999999999999999988753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=5.7e-30  Score=178.36  Aligned_cols=166  Identities=27%  Similarity=0.415  Sum_probs=119.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC--CCCCCcccccceeeEEEEEEe---CCeEEEEEEeeCCCccccccccccceecCc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   82 (206)
                      .++|+++|++|+|||||+++|.+.  .+...+.++.+.++....+.+   .+..+.+.+|||+|++.+......++..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  444555667666665554433   235678999999999999888888899999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec---HHHHHHHHHHcCCCc----E
Q 028654           83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS---EKKAKAWCASKGNIP----Y  154 (206)
Q Consensus        83 ~vi~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~----~  154 (206)
                      ++++|+|++++ .++..+..|+..+.....     +.|+++|+||+|+...  +...   .+....++...+ .+    +
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~  153 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-----SSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY  153 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-----TCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-----CCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence            99999999987 578888999988876532     6799999999999753  2211   223334443344 44    9


Q ss_pred             EEeeccCCC-CHHHHHHHHHHHHhhcCC
Q 028654          155 FETSAKEGF-NVEAAFECIAKNALKNEP  181 (206)
Q Consensus       155 ~~~s~~~~~-~i~~l~~~i~~~~~~~~~  181 (206)
                      +++||+++. +++++++.|.+.+.+.+.
T Consensus       154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~  181 (184)
T 2zej_A          154 HFVNATEESDALAKLRKTIINESLNFKI  181 (184)
T ss_dssp             EECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred             EEEecccCchhHHHHHHHHHHHHhcccc
Confidence            999999997 999999999998887554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=7.2e-28  Score=168.66  Aligned_cols=164  Identities=38%  Similarity=0.707  Sum_probs=141.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            45789999999999999999999999888788888888888888889998889999999999988888888888999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|.++..+++.+..|+..+.....    .+.|+++++||+|+.+.  +....+....++...+ +.++++|++++.++
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v  179 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTNV  179 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence            99999999888888888877655422    26799999999999753  3455677778887776 78999999999999


Q ss_pred             HHHHHHHHHHH
Q 028654          166 EAAFECIAKNA  176 (206)
Q Consensus       166 ~~l~~~i~~~~  176 (206)
                      +++++.|.+.+
T Consensus       180 ~~l~~~l~~~i  190 (191)
T 1oix_A          180 EAAFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=2.8e-28  Score=168.65  Aligned_cols=163  Identities=20%  Similarity=0.170  Sum_probs=122.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      ....++|+++|.+|+|||||+++|.+..+...+.++.+.+.....+.+.+  ..+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            45678999999999999999999999888776666666666666666666  4567999999999999998999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC--------CCcEEE
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--------NIPYFE  156 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  156 (206)
                      ++|+|+++........ ++..+..       .+.|+++|+||+|+...     ..+..........        ..++++
T Consensus        83 i~v~d~~~~~~~~~~~-~l~~~~~-------~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVE-AINHAKA-------ANVPIIVAINKMDKPEA-----NPDRVMQELMEYNLVPEEWGGDTIFCK  149 (178)
T ss_dssp             EEEEETTCCCCHHHHH-HHHHHGG-------GSCCEEEEEETTTSSCS-----CHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred             EEEEECCCCCcHHHHH-HHHHHHh-------CCCCEEEEEECccCCcC-----CHHHHHHHHHhcCcChhHcCCcccEEE
Confidence            9999998843322221 1122211       26799999999999753     1222222222211        147999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +||+++.|++++|++|.+.+......
T Consensus       150 ~Sa~~~~gv~~l~~~l~~~~~~~~~~  175 (178)
T 2lkc_A          150 LSAKTKEGLDHLLEMILLVSEMEELK  175 (178)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred             EecCCCCCHHHHHHHHHHhhhhhccc
Confidence            99999999999999999988776554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=3.8e-29  Score=175.86  Aligned_cols=163  Identities=17%  Similarity=0.247  Sum_probs=119.0

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEE--EEEEe-CCeEEEEEEeeCCCcccccccc---ccc
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLT--KEVQF-EDRLFTLQIWDTAGQERFQSLG---VAF   77 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~i~D~~G~~~~~~~~---~~~   77 (206)
                      .....+||+++|.+|+|||||++.+.+.. ...  ++.+.....  ....+ .+..+.+.+|||||++.+....   ..+
T Consensus        16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~   92 (196)
T 3llu_A           16 FQGSKPRILLMGLRRSGKSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI   92 (196)
T ss_dssp             ----CCEEEEEESTTSSHHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence            34568999999999999999999887753 322  233322222  22223 2556789999999999987776   789


Q ss_pred             eecCcEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC-----cceecHHHHHHHHH---
Q 028654           78 YRGADCCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN-----SRVVSEKKAKAWCA---  147 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~-----~~~~~~~~~~~~~~---  147 (206)
                      ++.+|++|+|||+++.  +++..+..|+..+.....     +.|+++|+||+|+....     .+.+..+....++.   
T Consensus        93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~  167 (196)
T 3llu_A           93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP-----DMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL  167 (196)
T ss_dssp             HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT-----TCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC-----CCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence            9999999999999987  666667777776644332     78999999999987532     13344455566666   


Q ss_pred             -HcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          148 -SKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       148 -~~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                       ..+ .+++++||++ .|++++|+.|++.+
T Consensus       168 ~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          168 EKLH-LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             TTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             hcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence             333 7899999999 99999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.5e-31  Score=188.15  Aligned_cols=165  Identities=25%  Similarity=0.486  Sum_probs=132.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4578999999999999999999998877666666654333 445556677788899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc----------ceecHHHHHHHHHHcCCCcE
Q 028654           86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~  154 (206)
                      +|+|++++.++..+. .|+..+.....     +.|+++|+||+|+.....          +....++...++...+..++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  181 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY  181 (204)
Confidence            999999999988875 77776654332     679999999999975421          13445566667666664489


Q ss_pred             EEeeccCCCCHHHHHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      +++||++|.|++++|++|.+.+
T Consensus       182 ~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          182 LECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=2.1e-28  Score=174.31  Aligned_cols=169  Identities=20%  Similarity=0.268  Sum_probs=115.0

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe-EEEEEEeeCCCcccccc-ccccceecC
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGA   81 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~   81 (206)
                      ++...++|+++|++|+|||||+++|.+..+...+.+ ++.....  +.+.+. .+.+.+|||||++.+.. .+..+++.+
T Consensus         3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   79 (214)
T 2fh5_B            3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-ITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSA   79 (214)
T ss_dssp             -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-CSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-cceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhC
Confidence            345679999999999999999999999887655543 3333332  555543 57899999999998887 677889999


Q ss_pred             cEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-------------
Q 028654           82 DCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-------------  147 (206)
Q Consensus        82 d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-------------  147 (206)
                      |++++|+|+++.. ++.....|+..+..... ....+.|+++|+||+|+..........+.+.....             
T Consensus        80 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B           80 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred             CEEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence            9999999999843 35555444444332211 11226799999999999865333222333332222             


Q ss_pred             --------HcC-------------CCcEEEeeccCC------CCHHHHHHHHHHHH
Q 028654          148 --------SKG-------------NIPYFETSAKEG------FNVEAAFECIAKNA  176 (206)
Q Consensus       148 --------~~~-------------~~~~~~~s~~~~------~~i~~l~~~i~~~~  176 (206)
                              ..+             ..+|+++||++|      .|++++|++|.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                    011             467999999999      99999999998753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=184.83  Aligned_cols=161  Identities=16%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..++|+|+|.+|+|||||+++|.+..+... .++.+..  ...+...+  +.+.||||||++.+......+++.+|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            457999999999999999999998876533 3444333  33344444  789999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----cCCCcEEEeeccCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~  162 (206)
                      |||++++.++..+..|+..+....   ...++|+++|+||+|+....    ..+++......    ....+++++||+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~vSAk~g  311 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSG  311 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred             EEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCccc----CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence            999999999998887777665432   22378999999999998642    22222222111    12357999999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 028654          163 FNVEAAFECIAKNALKN  179 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~  179 (206)
                      .|++++|++|.+.+.++
T Consensus       312 ~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          312 DGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             BTHHHHHHHHHHHHTC-
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            99999999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.95  E-value=5.6e-28  Score=165.39  Aligned_cols=154  Identities=12%  Similarity=0.159  Sum_probs=111.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc------cccccee-
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFYR-   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~~-   79 (206)
                      ..++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+  ..+.+|||||+..+..      ....++. 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            357999999999999999999998776555556555555555666655  5789999999877642      2244443 


Q ss_pred             -cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           80 -GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        80 -~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                       .+|++++|+|+++.+.   ...|+..+...       +.|+++|+||+|+....  .... +.+.++...+ .+++++|
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~--~~~~-~~~~~~~~~~-~~~~~~S  145 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKSL--GIEI-DVDKLEKILG-VKVVPLS  145 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHHT--TCCC-CHHHHHHHHT-SCEEECB
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhcccc--Chhh-HHHHHHHHhC-CCEEEEE
Confidence             7999999999987543   34566555431       67999999999986431  1111 2455666666 7899999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 028654          159 AKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~  176 (206)
                      |++|.|++++|++|.+.+
T Consensus       146 A~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          146 AAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             GGGTBSHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            999999999999998865

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=9e-28  Score=179.56  Aligned_cols=167  Identities=19%  Similarity=0.256  Sum_probs=126.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-----ccccccceecC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFYRGA   81 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~   81 (206)
                      .+||+++|.+|+|||||+++++++... ....+..+.......+.+.+ .+.+.+|||||++.+     ......+++.+
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            579999999999999999999887332 22223333344444444544 578999999999888     67778888999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce----ecHHHHHHHHHHcC--CCcEE
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----VSEKKAKAWCASKG--NIPYF  155 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----~~~~~~~~~~~~~~--~~~~~  155 (206)
                      |++|+|+|++++++++.+..|...+......  .++.|+++|+||+|+.....+.    ...+++..++...+  ..+++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~  159 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF  159 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence            9999999999999999887775544433211  1278999999999998643344    55577788888876  38999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhh
Q 028654          156 ETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ++||++ .++.++|..+++.+..
T Consensus       160 ~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          160 PTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             ECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EeeecC-ChHHHHHHHHHHHHcC
Confidence            999999 8999999998886654

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.7e-28  Score=179.04  Aligned_cols=165  Identities=24%  Similarity=0.302  Sum_probs=119.2

Q ss_pred             ceeeEEEEEcCC---------CCCHHHHHHHHhc---CCCCCCccccc-ceeeEEEE--------------EEeCCeEEE
Q 028654            6 RMLLKVIILGDS---------GVGKTSLMNQYVN---RKFSNQYKATI-GADFLTKE--------------VQFEDRLFT   58 (206)
Q Consensus         6 ~~~~~i~viG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~   58 (206)
                      +..+||+++|.+         |+|||||+++|.+   ..+...+.+++ +.++....              ..+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            457999999999         9999999999998   44555555554 33222111              113456788


Q ss_pred             EEEee-----------------------CCCcccccccccccee---------------------cCcEEEEEEECCCh-
Q 028654           59 LQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNVM-   93 (206)
Q Consensus        59 ~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~vi~v~d~~~~-   93 (206)
                      +.+||                       ++|++.+...+..++.                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       5566666666666666                     79999999999998 


Q ss_pred             -hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Q 028654           94 -KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI  172 (206)
Q Consensus        94 -~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i  172 (206)
                       .+++.+..|+..+......   .+.|+++|+||+|+...  +.  .++...++......+++++||+++.|++++|++|
T Consensus       177 ~~s~~~~~~~l~~i~~~~~~---~~~piilV~NK~Dl~~~--~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          177 NRNFDDQLKFVSNLYNQLAK---TKKPIVVVLTKCDEGVE--RY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             --CHHHHHHHHHHHHHHHHH---TTCCEEEEEECGGGBCH--HH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcc---CCCCEEEEEEccccccc--HH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence             8999999999888765211   16799999999999643  22  2566667766444899999999999999999999


Q ss_pred             HHHHh
Q 028654          173 AKNAL  177 (206)
Q Consensus       173 ~~~~~  177 (206)
                      .+.+.
T Consensus       250 ~~~l~  254 (255)
T 3c5h_A          250 VQLID  254 (255)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            98764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=4.7e-27  Score=168.92  Aligned_cols=166  Identities=18%  Similarity=0.076  Sum_probs=113.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc---------ccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~   76 (206)
                      ...++|+|+|.+|+|||||+++|.+..+.....+..+...........+  ..+.+|||||.....         .....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4568999999999999999999998876533344444445444444444  678999999973211         11223


Q ss_pred             ceecCcEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHH---HHHHHHHHcC-
Q 028654           77 FYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK---KAKAWCASKG-  150 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~---~~~~~~~~~~-  150 (206)
                      ++..+|++++|+|++++.++.  ....|+..+....     .+.|+++|+||+|+...  .....+   ....++...+ 
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-----SNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC------CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCS
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-----cCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHHhcCC
Confidence            457789999999999877654  2234555554321     26799999999999764  233222   4445555442 


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ..+++++||++|.|++++|++|.+.+.+..
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            268999999999999999999999887654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=1.1e-27  Score=168.06  Aligned_cols=161  Identities=19%  Similarity=0.183  Sum_probs=107.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------ccccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   75 (206)
                      ...++|+++|.+|+|||||+++|.+..+.....++.+.+........++   .+.+|||||          ++.+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            3568999999999999999999998875544444444433333334443   588999999          666666677


Q ss_pred             cceecC---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654           76 AFYRGA---DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        76 ~~~~~~---d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .++..+   |++++|+|+++..+..... +...+..       .+.|+++|+||+|+..........+++..........
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            777666   9999999999876665532 2222221       2779999999999986422222223333322222347


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          153 PYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      +++++||+++.|+++++++|.+.+.
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ceEEEEccCCCCHHHHHHHHHHHhc
Confidence            8999999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=3e-27  Score=165.74  Aligned_cols=159  Identities=19%  Similarity=0.265  Sum_probs=115.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------ccccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~   75 (206)
                      ...++|+++|.+|+|||||+++|.+..+. ...++.+.+..........   .+.+|||||          ++.+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            34689999999999999999999988733 2233333333333333332   577999999          555666666


Q ss_pred             cceecC---cEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC
Q 028654           76 AFYRGA---DCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG  150 (206)
Q Consensus        76 ~~~~~~---d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  150 (206)
                      .++..+   |++++|+|+++......  +..|+...          +.|+++|+||+|+..........+++..++...+
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            666655   99999999987543322  23333322          6799999999999866555566667777777766


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ..+++++||+++.|++++|++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            6899999999999999999999998754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=2.5e-26  Score=171.75  Aligned_cols=167  Identities=20%  Similarity=0.124  Sum_probs=127.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc----------ccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~   74 (206)
                      .+.-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ...++.||||||.....          ...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            456789999999999999999999988752 333444444444444443 13688999999975543          455


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-CCCc
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP  153 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (206)
                      ..++..+|++++|+|+++..+......|+..+...       +.|+++|+||+|+...  .....+....+.... ...+
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-------~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~~~~  157 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-------NKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPELTE  157 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-------CCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTTCCC
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-------CCCEEEEEECccCCCC--HHHHHHHHHHHHHhccCCCe
Confidence            66788999999999999887777766666665541       6799999999999743  445566677777766 4578


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++++||++|.|+++++++|.+.+.+.++.
T Consensus       158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~~  186 (308)
T 3iev_A          158 IVPISALKGANLDELVKTILKYLPEGEPL  186 (308)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence            99999999999999999999999876654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=7.3e-27  Score=163.00  Aligned_cols=160  Identities=12%  Similarity=0.140  Sum_probs=120.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------cccccce
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY   78 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~   78 (206)
                      .+..++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+  ..+.+|||||+..+.      .....++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            34678999999999999999999998766555566666666666666665  678999999988764      2334444


Q ss_pred             e--cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           79 R--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        79 ~--~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      .  .+|++++|+|.++   ++....|+..+..       .+.|+++|+||+|+.......   +....++...+ .++++
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~  147 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIE---IDVDKLEKILG-VKVVP  147 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEE
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccccch---HHHHHHHHHhC-CCeEE
Confidence            3  4899999999985   3445566666543       267999999999986431111   34555666666 78999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +||+++.|++++|++|.+.+.+..
T Consensus       148 ~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          148 LSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             EEecCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999887655

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=4.1e-27  Score=164.45  Aligned_cols=159  Identities=21%  Similarity=0.230  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCC-----------ccccccccccc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF   77 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~   77 (206)
                      ++|+++|.+|+|||||+++|.+..+...+.++.+.......  +.    .+.+|||||           ++.+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999998877766666554443332  22    678999999           56666666666


Q ss_pred             eec-CcEEEEEEECCChhhHHHH-HHHHHH--------HHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH
Q 028654           78 YRG-ADCCVLVYDVNVMKSFDNL-NNWREE--------FLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (206)
Q Consensus        78 ~~~-~d~vi~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~  147 (206)
                      ++. ++++++++++.+..++..+ ..|...        +......   .+.|+++|+||+|+...  .   .+..+.++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~---~~~~~~~~~  147 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--V---QEVINFLAE  147 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--H---HHHHHHHHH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCc--H---HHHHHHHHH
Confidence            665 6655555555555566554 455432        2221111   26799999999999764  2   456667776


Q ss_pred             HcCC------CcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          148 SKGN------IPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       148 ~~~~------~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ..+.      .+++++||++|.|++++|++|.+.+.+...
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            6652      247999999999999999999999887654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.5e-26  Score=157.34  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------cccccccceec
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG   80 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~   80 (206)
                      .+|+++|++|+|||||++++.+..+. ....++.+.+.....+...+  ..+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999988754 33344445555566666666  3788999999876       33444567789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      +|++++|+|+++..+...  .++......      .+.|+++|+||+|+....      ++...++ ..+..+++++||+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~~~~~~~~Sa~  144 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKHE------LYLGPLY-GLGFGDPIPTSSE  144 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGGG------GGCGGGG-GGSSCSCEECBTT
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccch------HhHHHHH-hCCCCCeEEEecc
Confidence            999999999997543322  222222222      167999999999997531      2233333 4453489999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 028654          161 EGFNVEAAFECIAKNA  176 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~  176 (206)
                      ++.|++++|++|.+.+
T Consensus       145 ~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          145 HARGLEELLEAIWERL  160 (161)
T ss_dssp             TTBSHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHHHHhC
Confidence            9999999999998865

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=1.7e-26  Score=159.12  Aligned_cols=155  Identities=23%  Similarity=0.292  Sum_probs=112.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   77 (206)
                      ...+|+++|++|+|||||+++|.+..+. ....++++.++....+.+++  ..+.+|||||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3579999999999999999999987643 33345555666667777776  35789999997653221        1235


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++.+|++++|+|+++..++.. ..|+..+.....    .++|+++|+||+|+.+......          .....+++++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~----------~~~~~~~~~~  145 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP----AKLPITVVRNKADITGETLGMS----------EVNGHALIRL  145 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCEEE----------EETTEEEEEC
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc----cCCCEEEEEECccCCcchhhhh----------hccCCceEEE
Confidence            788999999999998777653 466666655432    2689999999999864311110          1123689999


Q ss_pred             eccCCCCHHHHHHHHHHHHhh
Q 028654          158 SAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ||+++.|++++|++|.+.+..
T Consensus       146 SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          146 SARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             CTTTCTTHHHHHHHHHHHC--
T ss_pred             eCCCCCCHHHHHHHHHHHhhh
Confidence            999999999999999987644

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=5.2e-26  Score=165.93  Aligned_cols=156  Identities=21%  Similarity=0.169  Sum_probs=117.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc------ccce--
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG------VAFY--   78 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------~~~~--   78 (206)
                      ..++|+++|.+|+|||||+|+|++..+.....++.+.......+...+  ..+.+|||||...+....      ..++  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            468999999999999999999998876555556666655555555544  688999999987765422      3444  


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|++++|+|+++.+..   ..|...+...       +.|+++|+||+|+........   +...++...+ ++++++|
T Consensus        82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~~---~~~~l~~~lg-~~vi~~S  147 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQS---LYLLLEILEM-------EKKVILAMTAIDEAKKTGMKI---DRYELQKHLG-IPVVFTS  147 (258)
T ss_dssp             SCCSEEEEEEETTSCHHH---HHHHHHHHTT-------TCCEEEEEECHHHHHHTTCCB---CHHHHHHHHC-SCEEECC
T ss_pred             cCCCEEEEEeCCCchhhH---HHHHHHHHhc-------CCCEEEEEECcCCCCccchHH---HHHHHHHHcC-CCEEEEE
Confidence            579999999999986543   2344444331       689999999999864322222   3455666666 8999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhh
Q 028654          159 AKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~  178 (206)
                      |++|.|++++|++|.+.+..
T Consensus       148 A~~g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          148 SVTGEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             eeCCcCHHHHHHHHHHHhhc
Confidence            99999999999999997653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.94  E-value=1.3e-26  Score=168.91  Aligned_cols=151  Identities=17%  Similarity=0.201  Sum_probs=114.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc----------ccccce
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~   78 (206)
                      .+|+++|.+|||||||+|+|++........++.+.+.....+.+.+  ..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999999876666667777777777777776  3789999999876653          334455


Q ss_pred             --ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           79 --RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        79 --~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                        ..+|++++|+|+++.+....+..   .+..       .+.|+++|+||+|+.........   ...+....+ +++++
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~-------~~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~vi~  145 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTS---QLFE-------LGKPVVVALNMMDIAEHRGISID---TEKLESLLG-CSVIP  145 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHH---HHTT-------SCSCEEEEEECHHHHHHTTCEEC---HHHHHHHHC-SCEEE
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHH---HHHH-------cCCCEEEEEEChhcCCcCCcHHH---HHHHHHHcC-CCEEE
Confidence              78999999999998654433322   2221       17899999999998754323333   334555556 89999


Q ss_pred             eeccCCCCHHHHHHHHHHH
Q 028654          157 TSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~  175 (206)
                      +||++|.|+++++++|.+.
T Consensus       146 ~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          146 IQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CBGGGTBSHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHhh
Confidence            9999999999999999886

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=2.6e-27  Score=175.73  Aligned_cols=162  Identities=16%  Similarity=0.174  Sum_probs=117.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc---ccccceecCcE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC   83 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~   83 (206)
                      ||+++|..|+|||||++++.++....   ...+|.+.+...  +  + ..+.+++|||+|++++..   ....+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664332   245566555532  2  2 347899999999999964   35788999999


Q ss_pred             EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-----ceecHHHHHHHHHHc---CCCc
Q 028654           84 CVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----RVVSEKKAKAWCASK---GNIP  153 (206)
Q Consensus        84 vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~---~~~~  153 (206)
                      +|+|||++++  +....+..|+..+....     ++.|+++++||+|+.....     +++..++.++++...   .++.
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~  150 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS  150 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence            9999999987  33333334444443332     2789999999999986532     345555666666641   2488


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      |++|||++ .++.++|..|++.++++.+.
T Consensus       151 f~eTSAkd-~nV~eAFs~iv~~li~~~~~  178 (331)
T 3r7w_B          151 FYLTSIFD-HSIYEAFSRIVQKLIPELSF  178 (331)
T ss_dssp             EECCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred             EEEeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence            99999998 58999999999988765443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=5.1e-27  Score=187.71  Aligned_cols=166  Identities=23%  Similarity=0.336  Sum_probs=121.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEE------Ee--CCeEEEEEEeeCCCcccccccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV------QF--EDRLFTLQIWDTAGQERFQSLGVA   76 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~i~D~~G~~~~~~~~~~   76 (206)
                      ....+||+++|.+|+|||||++++.+..+.....++.+..+.....      .+  .+..+.+.+|||||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            3457999999999999999999999998877777777766654421      11  233578999999999999998999


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|+++.   +....|+..+.....     +.|+++|+||+|+...  .....+++..++...+ .++++
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~  186 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFHR  186 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEEE
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceEE
Confidence            99999999999999865   455778888877643     6799999999999865  4455677777766666 78999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +||+++.|++++++.|.+.+.+...
T Consensus       187 vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          187 ISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             CCC-----CTTHHHHHHHHHTCTTS
T ss_pred             EecCcccCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999887655

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.94  E-value=3.3e-27  Score=173.83  Aligned_cols=157  Identities=19%  Similarity=0.216  Sum_probs=116.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc----------ccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~   76 (206)
                      +.++|+++|.+|+|||||+|+|++..+.....++.+.+.....+.+.+  ..+.+|||||...+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            458999999999999999999999876656667777777677776665  46778999998776521          122


Q ss_pred             ce--ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           77 FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        77 ~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ++  ..+|++++|+|+++.+....+..+   +...       +.|+++|+||+|+.........   ...+....+ .++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~-------~~p~ivv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~  145 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL-------GIPCIVALNMLDIAEKQNIRIE---IDALSARLG-CPV  145 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH-------TCCEEEEEECHHHHHHTTEEEC---HHHHHHHHT-SCE
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc-------CCCEEEEEECccchhhhhHHHH---HHHHHHhcC-CCE
Confidence            22  689999999999986544433333   3322       6799999999998654222222   344555566 899


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +++||++|.|+++++++|.+.+...
T Consensus       146 i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          146 IPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             EECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999998876654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=2.1e-26  Score=164.92  Aligned_cols=166  Identities=14%  Similarity=0.054  Sum_probs=108.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC--CCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCc----------ccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~~~   72 (206)
                      ...++|+|+|.+|+|||||+|+|++...  .....+..+.....  ..+. .....+.||||||.          +.+..
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            3468999999999999999999998863  22223333333322  2232 33357889999994          33344


Q ss_pred             ccccceec---CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-
Q 028654           73 LGVAFYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-  148 (206)
Q Consensus        73 ~~~~~~~~---~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-  148 (206)
                      ....++..   +|++++|+|+++..+.. ...|+..+..       .+.|+++|+||+|+..........+.+...... 
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~  176 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY  176 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence            44455544   78899999998754322 2334444432       267999999999997642222223333333333 


Q ss_pred             -----cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          149 -----KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       149 -----~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                           ....+++++||+++.|+++++++|.+.+.....
T Consensus       177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~  214 (223)
T 4dhe_A          177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA  214 (223)
T ss_dssp             HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred             hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence                 245789999999999999999999998876543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=3.8e-25  Score=164.59  Aligned_cols=163  Identities=15%  Similarity=0.070  Sum_probs=113.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--------ccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~   76 (206)
                      ....+|+++|.+|+|||||+|+|++..+.. ...+.++...........  ..++.||||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            345689999999999999999999987752 333333333333333333  36889999999765        3445556


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWR-EEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      +++.+|++++|+|+++..+..  ..|+ ..+....     .+.|+++|+||+|+....  ....+.+..+   .+..+++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~---~~~~~~~  150 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-----GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPEAEPR  150 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-----TTSCEEEEEECGGGCSSH--HHHHHHHHHT---STTSEEE
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-----CCCCEEEEEECcccCCch--HHHHHHHHHh---cCcCcEE
Confidence            788999999999998764433  3343 3343321     267999999999997541  1012222222   3446799


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          156 ETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++||+++.|++++++.|.+.+++..+.
T Consensus       151 ~iSA~~g~gv~~l~~~l~~~l~~~~~~  177 (301)
T 1wf3_A          151 MLSALDERQVAELKADLLALMPEGPFF  177 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTCCBCCCS
T ss_pred             EEeCCCCCCHHHHHHHHHHhcccCCCC
Confidence            999999999999999999988765544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=1.7e-26  Score=169.33  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=111.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------ccccccee-
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-   79 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-   79 (206)
                      ..++|+++|.+|+|||||+|+|++........++.+.......  +.. ...+.+|||||+..+.      .....++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            3579999999999999999999987654444455444433333  333 4678999999988765      23344554 


Q ss_pred             -cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           80 -GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        80 -~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                       .+|++++|+|+++.+..   ..|...+..       .+.|+++|+||+|+.......   .....+....+ ++++++|
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg-~~vi~~S  144 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQGKK---INVDKLSYHLG-VPVVATS  144 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEECB
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCCcH---HHHHHHHHHcC-CCEEEEE
Confidence             59999999999875443   345555543       178999999999986432112   23455556666 7999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhh
Q 028654          159 AKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~  178 (206)
                      |++|.|++++|++|.+.+..
T Consensus       145 A~~g~gi~el~~~i~~~~~~  164 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTTTS  164 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSCTT
T ss_pred             ccCCCCHHHHHHHHHHHHhh
Confidence            99999999999999886543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=2.2e-25  Score=164.09  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=118.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc------ccccce--
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--   78 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--   78 (206)
                      +.++|+++|++|+|||||+|+|.+..+.....++.+.+.....+.+.+  ..+.+|||||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999999877656667777777777777766  4588999999877665      334444  


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|++++|+|+++.+   ....|...+....      ..|+++|+||+|+.........   ...+....+ .+++++|
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~~~~S  146 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEME------VKNIILVLNKFDLLKKKGAKID---IKKMRKELG-VPVIPTN  146 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT------CCSEEEEEECHHHHHHHTCCCC---HHHHHHHHS-SCEEECB
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhcC------CCCEEEEEEChhcCcccccHHH---HHHHHHHcC-CcEEEEE
Confidence            6799999999998753   2233444443321      2799999999997643212222   455556666 8999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcC
Q 028654          159 AKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +++|.|++++++.+.+.+....
T Consensus       147 a~~g~gi~~l~~~i~~~~~~~~  168 (271)
T 3k53_A          147 AKKGEGVEELKRMIALMAEGKV  168 (271)
T ss_dssp             GGGTBTHHHHHHHHHHHHHTCC
T ss_pred             eCCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999876544

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.93  E-value=7.9e-25  Score=172.42  Aligned_cols=161  Identities=20%  Similarity=0.215  Sum_probs=113.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF   77 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~   77 (206)
                      .+..++|+++|+.++|||||+++|.+..       +..+..++.+.+.....+.+.+  ..+.+|||||++++...+...
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3567999999999999999999999876       2233344444444334445554  688999999999998888889


Q ss_pred             eecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc---CC
Q 028654           78 YRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---GN  151 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  151 (206)
                      +..+|++++|+|+++   +.+.+.+    ..+. ..      ++|+++|+||+|+.+........+++..+....   ..
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l----~~~~-~~------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~  162 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHM----LILD-HF------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN  162 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHH----HHHH-HT------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGG
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHH----HHHH-Hc------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccccc
Confidence            999999999999987   3333322    2221 11      678999999999986322233344555555543   24


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          152 IPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       163 ~~ii~vSA~~g~gI~~L~~~L~~~i~~  189 (482)
T 1wb1_A          163 SSIIPISAKTGFGVDELKNLIITTLNN  189 (482)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHHhhcC
Confidence            789999999999999999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=2.1e-24  Score=169.23  Aligned_cols=157  Identities=17%  Similarity=0.168  Sum_probs=98.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc--------ccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~   77 (206)
                      ..++|+++|.+|+|||||+|+|.+.... ....++++.+.....+.+.+  ..+.+|||||...+....        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            4688999999999999999999987532 44556666666666777776  578999999976655332        346


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.++..+..+... .....     +.|+++|+||+|+.....  ..   .+.+... +..+++++
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~-l~~l~-----~~piIvV~NK~Dl~~~~~--~~---~~~l~~~-~~~~~i~v  377 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTEIREL-KAAHP-----AAKFLTVANKLDRAANAD--AL---IRAIADG-TGTEVIGI  377 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHHHHHH-HHHCT-----TSEEEEEEECTTSCTTTH--HH---HHHHHHH-HTSCEEEC
T ss_pred             cccCCEEEEEEECCCCcchhhhHHHHHH-HHhcC-----CCCEEEEEECcCCCCccc--hh---HHHHHhc-CCCceEEE
Confidence            7899999999999987776433232222 22222     679999999999986522  11   1233333 22689999


Q ss_pred             eccCCCCHHHHHHHHHHHHh
Q 028654          158 SAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ||+++.|+++++++|.+.+.
T Consensus       378 SAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          378 SALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             BTTTTBSHHHHHHHHTHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHh
Confidence            99999999999999999887

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.92  E-value=7.4e-24  Score=164.19  Aligned_cols=165  Identities=17%  Similarity=0.169  Sum_probs=108.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCcccccce--eeEEEEEEe-------------C--C----eEEEEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGA--DFLTKEVQF-------------E--D----RLFTLQ   60 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~   60 (206)
                      ++..++|+++|+.++|||||+++|.+..   +.....+..+.  .+....+..             .  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998543   22333343233  222222211             1  1    136899


Q ss_pred             EeeCCCccccccccccceecCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        61 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      ||||||++.+...+...+..+|++|+|+|+++.    .+.+.+..    +. ...     ..|+++|+||+|+.......
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~-~l~-----~~~iivv~NK~Dl~~~~~~~  154 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LE-ILG-----IDKIIIVQNKIDLVDEKQAE  154 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HH-HTT-----CCCEEEEEECTTSSCTTTTT
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HH-HcC-----CCeEEEEEEccCCCCHHHHH
Confidence            999999999988888888899999999999964    33333322    21 111     24799999999998754334


Q ss_pred             ecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ...+++..+....  ...+++++||+++.|+++++++|.+.+...
T Consensus       155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            4556666666542  347899999999999999999999877643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.92  E-value=8.3e-24  Score=163.66  Aligned_cols=169  Identities=16%  Similarity=0.119  Sum_probs=116.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEE---------EEE-------Ee---CCeEEEEEEeeCC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLT---------KEV-------QF---EDRLFTLQIWDTA   65 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~---------~~~-------~~---~~~~~~~~i~D~~   65 (206)
                      ++..++|+++|++++|||||+++|++.......... ......         ...       ..   ......+.+||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            456799999999999999999999985432210000 000000         000       00   1123689999999


Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW  145 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~  145 (206)
                      |++.+...+...+..+|++++|+|+++..+......++..+....      ..|+++|+||+|+.+........+++..+
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------~~~iivviNK~Dl~~~~~~~~~~~~i~~~  157 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------VKNLIIVQNKVDVVSKEEALSQYRQIKQF  157 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999998765555566655544331      24899999999998643222233344444


Q ss_pred             HHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          146 CASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       146 ~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ....  ...+++++||++|.|+++++++|.+.+....
T Consensus       158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            3322  2478999999999999999999998775543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=4.7e-25  Score=170.26  Aligned_cols=159  Identities=23%  Similarity=0.248  Sum_probs=113.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-------cc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-------VA   76 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~~   76 (206)
                      ....++|+++|..|+|||||+++|++..+. ....++++.+.....+.+.+.. .+.+|||||+..+....       ..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            445789999999999999999999988763 3445555566666667666543 78999999988766542       34


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      ++..+|++++|+|++..+   ....|+..+...       +.|+++|+||+|+......    +..+.+....+ .++++
T Consensus       110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~~  174 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVLL  174 (423)
T ss_dssp             HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCCC
T ss_pred             HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEEE
Confidence            678899999999994332   234555555543       6799999999999865322    44444444444 78999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhc
Q 028654          157 TSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +||+++.|++++|++|.+.+.+.
T Consensus       175 vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          175 VSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999998765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.4e-24  Score=169.66  Aligned_cols=162  Identities=17%  Similarity=0.147  Sum_probs=112.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccc-
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLG-   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~-   74 (206)
                      ..++|+++|.+|+|||||+|+|++..+. ....++++.+.....+.+++.  .+.+|||||+..          +.... 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4689999999999999999999988754 444556666665666666664  588999999732          32222 


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHH---HcC
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA---SKG  150 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~---~~~  150 (206)
                      ..+++.+|++++|+|++++.+.+.. .|...+..       .+.|+++|+||+|+.+..  ....++.. .+..   ...
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~~  321 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLD  321 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGGT
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccCC
Confidence            2467889999999999998777664 45555442       177999999999998642  22222222 2222   234


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ..+++++||++|.|++++|+.+.+.+....
T Consensus       322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          322 YAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            589999999999999999999998876543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=4.2e-23  Score=157.38  Aligned_cols=162  Identities=21%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc---------cccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVA   76 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~   76 (206)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+...+  ..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            3568999999999999999999998775433344444455444444443  5789999999644321         1112


Q ss_pred             ceecCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           77 FYRGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ....+|++++|+|+++..  ++.....|+..+.....     +.|+++|+||+|+...  .  ..++...++...+ .++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~--~--~~~~~~~~~~~~~-~~~  312 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADE--E--NIKRLEKFVKEKG-LNP  312 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCH--H--HHHHHHHHHHHTT-CCC
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCCh--H--HHHHHHHHHHhcC-CCe
Confidence            345699999999998876  66777788888776543     6799999999999753  1  2244445555544 789


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +++||++|+|+++++++|.+.+.+.
T Consensus       313 ~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          313 IKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988553

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.6e-25  Score=159.77  Aligned_cols=150  Identities=14%  Similarity=0.146  Sum_probs=103.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec-
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-   80 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-   80 (206)
                      ....++|+++|++|+|||||+++|.+..+..   .+.++.+..+         ....+.+|||||++.+...+..++.. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4457899999999999999999999887653   2333332222         33578899999999998888888876 


Q ss_pred             ---CcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----cHHHHHHHHHHcCCC
Q 028654           81 ---ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCASKGNI  152 (206)
Q Consensus        81 ---~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~  152 (206)
                         +|++++|+|++ ++.++.....|+..+..........+.|+++|+||+|+........    ..+++..++...+ .
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~  158 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K  158 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence               89999999999 8888888888888776543210122789999999999987532111    1344555555544 6


Q ss_pred             cEEEeeccCCCC
Q 028654          153 PYFETSAKEGFN  164 (206)
Q Consensus       153 ~~~~~s~~~~~~  164 (206)
                      .++++|++++.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            788999998764

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.91  E-value=1e-23  Score=163.54  Aligned_cols=165  Identities=18%  Similarity=0.219  Sum_probs=114.0

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC---CCCCccccccee--eEEEEEEe-------------C--C----eEEEEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGAD--FLTKEVQF-------------E--D----RLFTLQ   60 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~   60 (206)
                      +...++|+++|+.++|||||+++|.+..   +..+..+..+..  +....+..             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999998543   223334433332  22222211             0  1    136899


Q ss_pred             EeeCCCccccccccccceecCcEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        61 i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      ||||||++.|...+...+..+|++|+|+|+++.    .+.+.+..    +.. ..     ..|+++|+||+|+.......
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~-~~-----~~~iivviNK~Dl~~~~~~~  156 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQI-IG-----QKNIIIAQNKIELVDKEKAL  156 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHH-HT-----CCCEEEEEECGGGSCHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHH-cC-----CCcEEEEEECccCCCHHHHH
Confidence            999999999988888888899999999999964    33333322    211 11     24799999999998642222


Q ss_pred             ecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ...+++..+....  ...+++++||+++.|+++|+++|.+.++..
T Consensus       157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p  201 (410)
T 1kk1_A          157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP  201 (410)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence            3344555555432  347999999999999999999999877643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=3.5e-23  Score=154.17  Aligned_cols=163  Identities=16%  Similarity=0.137  Sum_probs=112.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc---------cccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~   76 (206)
                      ...+|+++|++|+|||||+|+|++..+. ....+.++.......+...+  ..+.+|||||..         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            3458999999999999999999988653 22233333332233333333  578899999986         34445567


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++++|+|+++ -+  ....++......      .+.|+++|+||+|+...  .....+.+..+....+...+++
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~  153 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLRE------GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVP  153 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHS------SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEE
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHh------cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEE
Confidence            7889999999999976 22  222333222221      16799999999999752  2333445555555555447999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +||+++.|++++++.|.+.+++..+.
T Consensus       154 iSA~~g~~v~~l~~~i~~~l~~~~~~  179 (301)
T 1ega_A          154 ISAETGLNVDTIAAIVRKHLPEATHH  179 (301)
T ss_dssp             CCTTTTTTHHHHHHHHHTTCCBCCCS
T ss_pred             EECCCCCCHHHHHHHHHHhCCcCCCC
Confidence            99999999999999999988765543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=2e-23  Score=163.22  Aligned_cols=154  Identities=21%  Similarity=0.300  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------cccccccce
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   78 (206)
                      .+|+++|.+|+|||||+|+|++.... ....++++.+.....+.+.+.  .+.+|||||.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            47999999999999999999987643 345566666666777777774  578999999653         233455678


Q ss_pred             ecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH-HHHHHHcCCCcEE
Q 028654           79 RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA-KAWCASKGNIPYF  155 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~  155 (206)
                      +.+|++++|+|+.+..+...  +..|+...          ++|+++|+||+|+...    . .... ..+. ..+..+++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~  143 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRKS----------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPI  143 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCE
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEE
Confidence            99999999999987544332  33333221          6799999999998521    1 1222 3333 34434789


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          156 ETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ++||++|.|+++++++|.+.+.+..
T Consensus       144 ~iSA~~g~gv~~L~~~i~~~l~~~~  168 (439)
T 1mky_A          144 PVSAEHNINLDTMLETIIKKLEEKG  168 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEeccCCCCHHHHHHHHHHhccccc
Confidence            9999999999999999999988653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.91  E-value=3.2e-24  Score=161.69  Aligned_cols=164  Identities=18%  Similarity=0.136  Sum_probs=120.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----cccccccce---ecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~~   81 (206)
                      .+|+++|.+|+|||||+++|++........+.++.......+.+.+. ..+.+|||||..+    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46889999999999999999987654333444444444555555532 3789999999543    223334444   459


Q ss_pred             cEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEe
Q 028654           82 DCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET  157 (206)
Q Consensus        82 d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  157 (206)
                      +++|+|+|+++   +.+++.+..|..++..+...  ..++|+++|+||+|+...      .+..+.+...... .+++++
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i  309 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI  309 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence            99999999998   77888888888888765321  137899999999999752      1345555555542 679999


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcCC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ||+++.|+++++++|.+.+.+.++
T Consensus       310 SA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          310 SAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             ECCCCcCHHHHHHHHHHHHhhCcc
Confidence            999999999999999999876554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=8.2e-26  Score=178.66  Aligned_cols=166  Identities=20%  Similarity=0.186  Sum_probs=118.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .+++|+++|++++|||||+++|.+..+.....++.+.++....+...+ ...+.||||||++.|...+..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            357899999999999999999998766555555555554444443321 1368899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHH---HHHc-CCCcEEEeeccCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW---CASK-GNIPYFETSAKEG  162 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~s~~~~  162 (206)
                      |+|+++....+....| ..+..       .++|+++|+||+|+.+....... +.+..+   .... ...+++++||++|
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~~-------~~vPiIVViNKiDl~~~~~~~v~-~~l~~~~~~~e~~~~~~~iv~vSAktG  152 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAKD-------AHVPIVLAINKCDKAEADPEKVK-KELLAYDVVCEDYGGDVQAVHVSALTG  152 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHHT-------TTCCEEECCBSGGGTTTSCCSSS-SHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred             EEECCCCccHHHHHHH-HHHHH-------cCCcEEEEEecccccccchHHHH-HHHHhhhhhHHhcCCCceEEEEECCCC
Confidence            9999986555444333 22221       17799999999999764322222 222211   1111 2358999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCC
Q 028654          163 FNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~~~  182 (206)
                      .|+++++++|...+....+.
T Consensus       153 ~GI~eLle~I~~l~~~~~~~  172 (537)
T 3izy_P          153 ENMMALAEATIALAEMLELK  172 (537)
T ss_dssp             CSSHHHHHHHHHHHTTCCCC
T ss_pred             CCchhHHHHHHHhhhccccc
Confidence            99999999999887644443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.2e-23  Score=165.23  Aligned_cols=164  Identities=17%  Similarity=0.157  Sum_probs=115.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCeEEEEEEeeCCC----------cccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~   74 (206)
                      ...++|+++|.+|+|||||+++|.+... .....++++.+.....+...+.  .+.+|||||          ++.+....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3468999999999999999999997653 2344555555555556666664  788999999          45555443


Q ss_pred             c-cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc----
Q 028654           75 V-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----  149 (206)
Q Consensus        75 ~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~----  149 (206)
                      . .+++.+|++++|+|+++...... ..|...+..       .+.|+++|+||+|+...  .....++....+...    
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~  340 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQFL  340 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCCC--chHHHHHHHHHHHHhcccC
Confidence            3 36788999999999987544222 344444433       17899999999999865  344455555544433    


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ...+++++||++|.|++++|++|.+.+.....
T Consensus       341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            35899999999999999999999998765543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.90  E-value=7.2e-23  Score=164.10  Aligned_cols=163  Identities=18%  Similarity=0.203  Sum_probs=112.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC--C-------------CcccccceeeEEEEEEe---CCeEEEEEEeeCCCcc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~   68 (206)
                      ...+|+++|+.++|||||+++|+.....  .             +...+.+.......+.+   ++..+.+.||||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            3579999999999999999999863211  0             01111222222222323   4557899999999999


Q ss_pred             ccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH
Q 028654           69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS  148 (206)
Q Consensus        69 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~  148 (206)
                      +|...+..++..+|++|+|+|+++....+....|.....        .++|+++|+||+|+....    ..+...++...
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~----~~~v~~ei~~~  150 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD----PERVAEEIEDI  150 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence            999999999999999999999998766666666655442        177999999999998652    22333444444


Q ss_pred             cC--CCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       149 ~~--~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      .+  ...++++||++|.|+++++++|.+.++....
T Consensus       151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~  185 (599)
T 3cb4_D          151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG  185 (599)
T ss_dssp             TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred             hCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence            43  2358999999999999999999998876443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=5.1e-24  Score=166.43  Aligned_cols=156  Identities=16%  Similarity=0.215  Sum_probs=100.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc--------ccccccccce
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFY   78 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~   78 (206)
                      ..+|+++|.+|+|||||+|+|.+..+. ....++.+.+.......+.+  ..+.+|||||..        .+......++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987654 23334444444444443343  578999999975        4556667788


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|++++|+|+.+..+...  .++..+..   .   .+.|+++|+||+|+......      ...+. ..+..+++++|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~---~~~pvilv~NK~D~~~~~~~------~~~~~-~lg~~~~~~iS  145 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY---R---TKKPVVLAVNKLDNTEMRAN------IYDFY-SLGFGEPYPIS  145 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT---T---CCSCEEEEEECCCC-----C------CCSSG-GGSSCCCEECB
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH---H---cCCCEEEEEECccCccchhh------HHHHH-HcCCCCeEEEe
Confidence            99999999999988665443  23333222   1   27799999999998753111      11121 23334789999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcC
Q 028654          159 AKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      |++|.|+.++++++.+.+.+..
T Consensus       146 A~~g~gv~~L~~~i~~~l~~~~  167 (436)
T 2hjg_A          146 GTHGLGLGDLLDAVAEHFKNIP  167 (436)
T ss_dssp             TTTTBTHHHHHHHHHHTGGGCC
T ss_pred             CcCCCChHHHHHHHHHhcCccc
Confidence            9999999999999999887644

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.90  E-value=1.5e-22  Score=161.98  Aligned_cols=164  Identities=16%  Similarity=0.235  Sum_probs=114.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-------------CcccccceeeEEEEEEe---CCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSN-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~   67 (206)
                      ....+|+++|+.++|||||+++|+...  +..             +...+.+.......+.+   ++..+.+.||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            346799999999999999999997531  110             00111122111122222   455689999999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA  147 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~  147 (206)
                      .+|...+..++..+|++++|+|+++....+....|.....        .++|+++|+||+|+....    ..+...++..
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~----~~~v~~el~~  151 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD----VDRVKKQIEE  151 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHH
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC----HHHHHHHHHH
Confidence            9999888889999999999999998777777666655442        178999999999998642    2233444444


Q ss_pred             HcCC--CcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          148 SKGN--IPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       148 ~~~~--~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      ..+.  ..++++||++|.|+++++++|.+.++....
T Consensus       152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~  187 (600)
T 2ywe_A          152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG  187 (600)
T ss_dssp             TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred             hhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence            4441  258999999999999999999998876443

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2.6e-23  Score=163.13  Aligned_cols=153  Identities=23%  Similarity=0.272  Sum_probs=115.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcc-cccc--------ccccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVAF   77 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~   77 (206)
                      .++|+++|.+|+|||||+|+|.+.... ....++++.+.....+.+++  ..+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            489999999999999999999987532 45566666777777777776  568899999987 5432        12356


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.+++... ++..    ..     +.|+++|+||+|+...    ...+++..+..  ...+++++
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~-----~~piivV~NK~DL~~~----~~~~~~~~~~~--~~~~~i~i  384 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILER----IK-----NKRYLVVINKVDVVEK----INEEEIKNKLG--TDRHMVKI  384 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHH----HT-----TSSEEEEEEECSSCCC----CCHHHHHHHHT--CSTTEEEE
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHH----hc-----CCCEEEEEECcccccc----cCHHHHHHHhc--CCCcEEEE
Confidence            78899999999999877765532 2222    21     6799999999999753    23344444432  23689999


Q ss_pred             eccCCCCHHHHHHHHHHHHhh
Q 028654          158 SAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ||+++.|+++++++|.+.+..
T Consensus       385 SAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHTHH
T ss_pred             ECCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999997664

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=1.3e-22  Score=158.23  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=105.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   53 (206)
                      ....++|+++|++++|||||+++|++...                               ..+..++.+.+.....+...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            34578999999999999999999965321                               11122334444444444444


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNK  126 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-viiv~nK  126 (206)
                      +  ..+.||||||+++|...+..++..+|++|+|+|+++...   +.   .....+..+.. .      ++| +++|+||
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~------~v~~iIvviNK  164 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A------GVKHLIVLINK  164 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c------CCCeEEEEeec
Confidence            3  689999999999999999999999999999999987532   11   11111111111 1      566 9999999


Q ss_pred             CCCCCCCc----ceecHHHHHHHHHHcC-----CCcEEEeeccCCCCHHHHHH
Q 028654          127 TDVDGGNS----RVVSEKKAKAWCASKG-----NIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       127 ~D~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~l~~  170 (206)
                      +|+.....    .....+++..+....+     ..+++++||++|.|++++.+
T Consensus       165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            99964321    1122333444444433     36899999999999999665

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=4.9e-22  Score=151.20  Aligned_cols=166  Identities=19%  Similarity=0.117  Sum_probs=108.9

Q ss_pred             eE-EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------cccccccce
Q 028654            9 LK-VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY   78 (206)
Q Consensus         9 ~~-i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~   78 (206)
                      ++ |+++|++|+|||||+|+|.+..+.....+..+.+.....+.+.+  ..+.+|||+|...         +... ...+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHH
Confidence            44 99999999999999999998876544455556666677777777  4678999999521         2222 2346


Q ss_pred             ecCcEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc--CCCcE
Q 028654           79 RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPY  154 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (206)
                      ..+|++++|+|++++.  ....+..|...+.....    .+.|+++|+||+|+.... .....+.+..+....  ...++
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~----~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~  330 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETLQSSFEILREIGV----SGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDV  330 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC----CSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred             HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc----CCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence            7899999999999876  44445555444443321    267999999999997542 111122333333443  22468


Q ss_pred             EEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          155 FETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +++|++++.|+++++++|.+.+......
T Consensus       331 ~~~SA~~g~gi~~L~~~I~~~l~~~~~~  358 (364)
T 2qtf_A          331 IPISALKRTNLELLRDKIYQLATQLSLE  358 (364)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             EEEECCCCcCHHHHHHHHHHHhcccCCC
Confidence            9999999999999999999988765543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=2.8e-22  Score=146.67  Aligned_cols=166  Identities=17%  Similarity=0.237  Sum_probs=106.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccc-cceeeEEEEEEeCCeEEEEEEeeCCCcccccccc---------
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG---------   74 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~---------   74 (206)
                      ...++|+|+|++|+|||||+++|++... .....++ ++...........+  ..+.||||||...+....         
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            4578999999999999999999998763 3333333 44444444555555  578999999976543222         


Q ss_pred             --ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee-CCCCCCCCcceecH-------HHHHH
Q 028654           75 --VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN-KTDVDGGNSRVVSE-------KKAKA  144 (206)
Q Consensus        75 --~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n-K~D~~~~~~~~~~~-------~~~~~  144 (206)
                        ..+++.+|++++|+|++......  ..++..+...+...  .+.|+++|+| |+|+.+..   ...       +.+..
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~  170 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGGS---LMDYMHDSDNKALSK  170 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTCC---HHHHHHHCCCHHHHH
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCcc---HHHHHHhcchHHHHH
Confidence              22567899999999998622211  12222333322210  0346666666 99997431   111       22344


Q ss_pred             HHHHcCCCc--E--EEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          145 WCASKGNIP--Y--FETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       145 ~~~~~~~~~--~--~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +....+...  +  +++||+++.|++++|++|.+.+....
T Consensus       171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            555444211  2  78999999999999999999988755

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=6.8e-23  Score=160.14  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=105.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------cccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~   77 (206)
                      ..++|+++|++|+|||||+|+|.+..+. ....++++.+.....+.+++  ..+.+|||||..++...        ...+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            4679999999999999999999986543 34445555555555666666  56789999997554332        2346


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      +..+|++++|+|++++.+... ..|+..+    .     +.|+++|+||+|+.......    ....+   ....+++++
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~~~~~----~~~~~---~~~~~~i~i  363 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEKQLIT----SLEYP---ENITQIVHT  363 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCGGGST----TCCCC---TTCCCEEEE
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcchhhH----HHHHh---ccCCcEEEE
Confidence            788999999999998665543 3444433    2     45999999999997642111    11111   123689999


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      |++++.|+++++++|.+.+....
T Consensus       364 SAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          364 AAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             BTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             ECCCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999887654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.89  E-value=2.6e-23  Score=153.21  Aligned_cols=167  Identities=15%  Similarity=0.155  Sum_probs=93.6

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cc-------ccccceeeEEEEEEeCCeEEEEEEeeCCCcccc------
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QY-------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------   70 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~------   70 (206)
                      +...++|+++|.+|+|||||+|+|++..... .+       .++.+.+.....+...+..+.+.+|||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            4567999999999999999999988765443 22       445555555555555666679999999996321      


Q ss_pred             -cccc-------ccce-------------ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           71 -QSLG-------VAFY-------------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        71 -~~~~-------~~~~-------------~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                       ....       ..++             ..+|+++++++.+.......-..++..+.    .    ++|+++|+||+|+
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----~----~~pvi~V~nK~D~  156 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E----KVNIIPLIAKADT  156 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----T----TSCEEEEESSGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----c----cCCEEEEEeccCC
Confidence             1111       1112             23789999998765222122223333332    1    6799999999998


Q ss_pred             CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ..........+.+.......+ ++++++|+.++.|+++++++|.+.++-..
T Consensus       157 ~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p~~v  206 (274)
T 3t5d_A          157 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLAV  206 (274)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCSEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence            753222222233344444444 78899999999999999999988765443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=1.3e-21  Score=141.38  Aligned_cols=168  Identities=15%  Similarity=0.173  Sum_probs=106.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc--ccceeeEEEEEEeCCeEEEEEEeeCCCc-----------ccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQ-----------ERFQS   72 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----------~~~~~   72 (206)
                      ...++|+++|.+|+|||||+|+|++..+.....+  +.+.........+.+  ..+.+|||||.           ..+..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            4579999999999999999999999887655444  445555555666665  57789999993           23344


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee----cHHHHHHHHHH
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCAS  148 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~----~~~~~~~~~~~  148 (206)
                      .....+..+|++++|+|++......  ..|+..+...+...  ...|+++|+||+|+........    ..+.++.+...
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4444556789999999987533311  22333332211100  0458999999999875422111    12356667777


Q ss_pred             cCCCcEEEeeccCC-----CCHHHHHHHHHHHHhhcC
Q 028654          149 KGNIPYFETSAKEG-----FNVEAAFECIAKNALKNE  180 (206)
Q Consensus       149 ~~~~~~~~~s~~~~-----~~i~~l~~~i~~~~~~~~  180 (206)
                      .+ ..++.+++..+     .++.+++..+.+.+.+..
T Consensus       181 ~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~  216 (239)
T 3lxx_A          181 FG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK  216 (239)
T ss_dssp             HS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence            66 56777766543     689999999988886643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=2e-23  Score=163.89  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=101.7

Q ss_pred             cccceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC--------ccccccc
Q 028654            3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSL   73 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~   73 (206)
                      ...+...+|+++|.+|+|||||+|+|.+..+. ....++.+.+...  .........+.+|||||        ++.+...
T Consensus        18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~--~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~   95 (456)
T 4dcu_A           18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIY--SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQ   95 (456)
T ss_dssp             -----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEE--EECTTCSSCCEEECCCC------CCHHHHHHH
T ss_pred             hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEE--EEEEECCceEEEEECCCCCCcchHHHHHHHHH
Confidence            34566789999999999999999999987654 2223333333333  33333345789999999        6667777


Q ss_pred             cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ...++..+|++++|+|..+..+..  ..++..+...      .+.|+++|+||+|+....      +...++. ..+...
T Consensus        96 ~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~------~~~pvilV~NK~D~~~~~------~~~~e~~-~lg~~~  160 (456)
T 4dcu_A           96 AEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR------TKKPVVLAVNKLDNTEMR------ANIYDFY-SLGFGE  160 (456)
T ss_dssp             HHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT------CCSCEEEEEECC---------------CCSG-GGSSSS
T ss_pred             HHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH------cCCCEEEEEECccchhhh------hhHHHHH-HcCCCc
Confidence            778889999999999987643322  2333333222      278999999999986431      1111111 223346


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ++++||++|.|+.++++.+.+.+.+..
T Consensus       161 ~~~iSA~~g~gv~~L~~~i~~~l~~~~  187 (456)
T 4dcu_A          161 PYPISGTHGLGLGDLLDAVAEHFKNIP  187 (456)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTTGGGSC
T ss_pred             eEEeecccccchHHHHHHHHhhccccc
Confidence            789999999999999999999876543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.88  E-value=2.8e-22  Score=159.03  Aligned_cols=117  Identities=18%  Similarity=0.214  Sum_probs=84.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----------------------CCcccccceeeEEEEEEeCCeEEEEEEee
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------------NQYKATIGADFLTKEVQFEDRLFTLQIWD   63 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (206)
                      ....+|+++|++|+|||||+++|+.....                      ....++.+.......+.+.+  ..+.|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            34689999999999999999999621110                      00112223333334444444  6889999


Q ss_pred             CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      |||+.++......+++.+|++++|+|+++.........| ..+..       .++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~-------~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL-------RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT-------TTCCEEEEEECTTSCCS
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH-------cCCCEEEEEeCCCCccc
Confidence            999999999999999999999999999986665554444 22221       17899999999999754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=1.2e-22  Score=156.88  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=110.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC-------CCCC-------cccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS   72 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~   72 (206)
                      ..++|+++|+.++|||||+++|.+..       +...       .....+.++......+......+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            45899999999999999999998631       1100       001112222222333433446789999999999988


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHHHcC
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCASKG  150 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~  150 (206)
                      .+..++..+|++|+|+|+++....+....| ..+.. .      ++| +++++||+|+...... ....+++..++...+
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-~------~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  153 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-I------GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG  153 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-T------TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-c------CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence            888889999999999999985443333333 22222 1      668 6899999999752111 122345556666554


Q ss_pred             ----CCcEEEeeccCCCC----------HHHHHHHHHHHHhh
Q 028654          151 ----NIPYFETSAKEGFN----------VEAAFECIAKNALK  178 (206)
Q Consensus       151 ----~~~~~~~s~~~~~~----------i~~l~~~i~~~~~~  178 (206)
                          ..+++++||+++.+          +.++++.|.+.++.
T Consensus       154 ~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence                36899999999764          88999998887764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.88  E-value=2.4e-22  Score=158.72  Aligned_cols=153  Identities=17%  Similarity=0.142  Sum_probs=98.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (206)
                      ...++|+++|.+++|||||+++|++....                               ....++.+.+.....+.  .
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--T  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE--C
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe--c
Confidence            45789999999999999999999765211                               11122333333333333  3


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHH-----HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-----LNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ....+.||||||++++...+..++..+|++|+|+|+++......     .......+.....     ..|+++|+||+|+
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~iIvviNK~Dl  183 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHNLIIAMNKMDN  183 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCCEEEEEECGGG
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCcEEEEEECcCc
Confidence            34688999999999999999999999999999999998643211     1111111222111     2369999999999


Q ss_pred             CCCCcceecHH----HHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654          130 DGGNSRVVSEK----KAKAWCASKG----NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       130 ~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (206)
                      .+.  .....+    ++..+....+    ..+++++||++|.|+++
T Consensus       184 ~~~--~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          184 VDW--SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             GTT--CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             ccc--hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            763  222222    3333333332    36899999999999874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=8.1e-23  Score=158.27  Aligned_cols=164  Identities=15%  Similarity=0.100  Sum_probs=112.3

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--------CCCCC---------cccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNR--------KFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ....++|+++|++++|||||+++|.+.        .+...         ...+.+.+.  ....+......+.||||||+
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCS
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCCh
Confidence            346789999999999999999999873        11110         012222222  33334334467899999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHH
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAW  145 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~  145 (206)
                      ++|...+..++..+|++|+|+|+++....+ ...++..+...       ++| +++|+||+|+...... ....+++..+
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~  157 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDL  157 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHHH
Confidence            999888888899999999999998865433 34444444321       667 8899999999752111 1123345556


Q ss_pred             HHHcC----CCcEEEeeccCCCC------------------HHHHHHHHHHHHhh
Q 028654          146 CASKG----NIPYFETSAKEGFN------------------VEAAFECIAKNALK  178 (206)
Q Consensus       146 ~~~~~----~~~~~~~s~~~~~~------------------i~~l~~~i~~~~~~  178 (206)
                      ....+    ..+++++||+++.|                  +.+|++.|.+.++.
T Consensus       158 l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          158 LNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            65554    37899999999977                  77788887776653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=9e-22  Score=153.86  Aligned_cols=161  Identities=23%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-----------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-----------   74 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----------   74 (206)
                      ..++|+++|++|+|||||+|+|.+.... ....++++.+.....+.+++.  .+.+|||||........           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999987642 334455555555566677774  57899999964332211           


Q ss_pred             -ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH-HHHH---Hc
Q 028654           75 -VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA---SK  149 (206)
Q Consensus        75 -~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~-~~~~---~~  149 (206)
                       ..++..+|++++++|+++..+.... .+...+..       .+.|+++|+||+|+...  .....++.. .+..   ..
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~  326 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-------RGRASVVVFNKWDLVVH--REKRYDEFTKLFREKLYFI  326 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSTT--GGGCHHHHHHHHHHHCGGG
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCCc--hhhHHHHHHHHHHHHhccC
Confidence             2356779999999999876554432 22222221       16799999999999764  222233322 2222   22


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          150 GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ...+++++||++|.|++++|+.+.+.+...
T Consensus       327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          327 DYSPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             TTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            357899999999999999999999877554

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.87  E-value=2.3e-24  Score=169.18  Aligned_cols=159  Identities=21%  Similarity=0.218  Sum_probs=107.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      .+++|+++|+.++|||||+++|.+..+.....++.+.+.....+.+++  ..+.||||||++.|...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999999999987654433334444333333333333  467899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHH--HHHHHHHHc-CCCcEEEeeccCCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASK-GNIPYFETSAKEGF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~s~~~~~  163 (206)
                      |+|+++....+....| ..+..       .+.|+++++||+|+..........+  +...+.... +..+++++||++|.
T Consensus        81 VVda~~g~~~qT~e~l-~~~~~-------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI-QHAKA-------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEETTTBSCTTTHHHH-HHHHH-------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EeecccCccHHHHHHH-HHHHh-------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            9999873222222222 11211       1779999999999975422111100  000001111 23689999999999


Q ss_pred             CHHHHHHHHHHH
Q 028654          164 NVEAAFECIAKN  175 (206)
Q Consensus       164 ~i~~l~~~i~~~  175 (206)
                      |+++++++|...
T Consensus       153 gI~eLle~I~~~  164 (501)
T 1zo1_I          153 GIDELLDAILLQ  164 (501)
T ss_dssp             TCTTHHHHTTTT
T ss_pred             Ccchhhhhhhhh
Confidence            999999998753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.2e-22  Score=142.11  Aligned_cols=118  Identities=15%  Similarity=0.193  Sum_probs=87.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC---CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceec--
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG--   80 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~--   80 (206)
                      ...++|+++|++|+|||||+++|.+..+..   ...++.+..+         ....+.+|||||+..+...+..++..  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            456899999999999999999999887543   2222222111         33578899999998887777777765  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           81 --ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        81 --~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                        +|++++|+|++ +..++..+..|+..+..........+.|+++|+||+|+...
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  171 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence              89999999999 88888888888877765432101227899999999999865

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.87  E-value=3.9e-22  Score=152.15  Aligned_cols=149  Identities=15%  Similarity=0.034  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      +|+++|++++|||||+++|+        ....+.+.....+...+  ..+.||||||+++|...+...+..+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999997        22223333333333333  568999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEee-CCCCCCCCcceecHHHHHHHHHHcC--CCcEEE--eeccC--
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN-KTDVDGGNSRVVSEKKAKAWCASKG--NIPYFE--TSAKE--  161 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~s~~~--  161 (206)
                       +.. ......+++..+...       ++|. ++++| |+|+ +........+++..+....+  ..++++  +||++  
T Consensus        93 -~~g-~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~  162 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN  162 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred             -CCC-CcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence             542 233334444443322       5677 89999 9999 43111112244555544432  478999  99999  


Q ss_pred             -CCCHHHHHHHHHHHHhh
Q 028654          162 -GFNVEAAFECIAKNALK  178 (206)
Q Consensus       162 -~~~i~~l~~~i~~~~~~  178 (206)
                       +.|++++++.|.+.+..
T Consensus       163 ~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          163 PFEGVDELKARINEVAEK  180 (370)
T ss_dssp             TTTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhccc
Confidence             99999999999998764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.87  E-value=1.1e-21  Score=157.48  Aligned_cols=163  Identities=23%  Similarity=0.225  Sum_probs=106.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC----------------CeEEEEEEeeCCCccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~   69 (206)
                      ...++|+++|++++|||||+++|.+..+........+.+.........                .....+.||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            346799999999999999999998764432111111111111111110                0112589999999999


Q ss_pred             cccccccceecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce----------
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----------  136 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~----------  136 (206)
                      |...+..++..+|++|+|+|+++   +.+++.+..    +..       .++|+++++||+|+.+.....          
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa  151 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence            99999988999999999999998   455443321    211       178999999999997531110          


Q ss_pred             ----ecHHH-------HHHHHHHc--------------CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          137 ----VSEKK-------AKAWCASK--------------GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       137 ----~~~~~-------~~~~~~~~--------------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                          ...+.       ........              ...+++++||++|.|+++++++|...+...
T Consensus       152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                00011       11111111              224899999999999999999999887643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.87  E-value=3e-23  Score=161.87  Aligned_cols=162  Identities=15%  Similarity=0.201  Sum_probs=103.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC--CCCCC-----------------------------cccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQ-----------------------------YKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   54 (206)
                      +..++|+++|+.++|||||+++|+..  .+...                             ..++.+.+.....+  ..
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--EC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ec
Confidence            35689999999999999999999864  22211                             01222233222223  33


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGN  133 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~~  133 (206)
                      ....+.||||||++++...+..++..+|++|+|+|+++ .+++....|..+...+.......+. |+++++||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            34679999999999999989999999999999999998 5555332222111111100000133 589999999998632


Q ss_pred             cc----eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHHHH
Q 028654          134 SR----VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       134 ~~----~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l~~  170 (206)
                      ..    ....+++..++...+    ..+++++||++|.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            11    223455666666654    37899999999999986543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=2.2e-21  Score=151.36  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=101.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC--CC----------cc---------------------cccceeeEEEEEEe
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--NQ----------YK---------------------ATIGADFLTKEVQF   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~--~~----------~~---------------------~~~~~~~~~~~~~~   52 (206)
                      ...++|+++|++++|||||+++|++....  ..          ..                     .+.+.+.....  +
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~--~   99 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY--F   99 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE--E
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE--e
Confidence            34689999999999999999999865311  00          00                     11111211222  2


Q ss_pred             CCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCC
Q 028654           53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG  131 (206)
Q Consensus        53 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~  131 (206)
                      ......+.||||||+++|...+..++..+|++|+|+|+++....+. ..++..+.. .      +. |+++|+||+|+.+
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-~------~~~~iIvviNK~Dl~~  171 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-L------GIKHIVVAINKMDLNG  171 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-T------TCCEEEEEEECTTTTT
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-c------CCCeEEEEEEcCcCCc
Confidence            2233678999999999998888888999999999999997543322 333333322 1      33 5999999999986


Q ss_pred             CCcc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHH
Q 028654          132 GNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       132 ~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l  168 (206)
                      ....  ....+++..++...+    ..+++++||++|.|++++
T Consensus       172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            3211  112344555555544    368999999999999874

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=6.4e-22  Score=159.59  Aligned_cols=157  Identities=20%  Similarity=0.209  Sum_probs=101.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc-------------------------------ccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-------------------------------KATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   54 (206)
                      ...++|+++|++++|||||+++|++.......                               .++.+.+.....+... 
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence            45789999999999999999999876332111                               1233333333333333 


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVD  130 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~  130 (206)
                       ...+.||||||++.+...+..++..+|++|+|+|+++...   +.....+...+..... .   +. |+++|+||+|+.
T Consensus       244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-l---gi~~iIVVvNKiDl~  318 (611)
T 3izq_1          244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L---GIHNLIIAMNKMDNV  318 (611)
T ss_dssp             -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-T---TCCEEEEEEECTTTT
T ss_pred             -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-c---CCCeEEEEEeccccc
Confidence             3678999999999999999999999999999999986320   0000111111111111 1   33 599999999998


Q ss_pred             CCCcc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHH
Q 028654          131 GGNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       131 ~~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l  168 (206)
                      +....  ....+++..+....+    ..+++++||++|.|+.++
T Consensus       319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            63111  112333444444333    368999999999999876

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=5.6e-21  Score=144.55  Aligned_cols=123  Identities=15%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n  125 (206)
                      .+.+.+||++|++.++..+..++++++++|+|+|+++          ..++.....|+..+....   ...+.|+++|+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~---~~~~~piiLv~N  268 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK---WFTDTSIILFLN  268 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEE
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc---cccCCcEEEEEE
Confidence            3789999999999999999999999999999999998          456777777777765431   123789999999


Q ss_pred             CCCCCCCC-------------cceecHHHHHHHHHH----------cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          126 KTDVDGGN-------------SRVVSEKKAKAWCAS----------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       126 K~D~~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      |+|+....             ......+++..++..          ...+.+++|||+++.|++++|+++.+.+.+...
T Consensus       269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l  347 (353)
T 1cip_A          269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL  347 (353)
T ss_dssp             CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence            99985210             012456777777652          234789999999999999999999999887554

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.86  E-value=3e-21  Score=144.03  Aligned_cols=131  Identities=11%  Similarity=0.126  Sum_probs=97.2

Q ss_pred             EEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCC
Q 028654           47 TKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPE  116 (206)
Q Consensus        47 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  116 (206)
                      ...+.+.+  +.+.+||++|++.++..+..++++++++|+|+|++          +..++.....|+..+...   ....
T Consensus       159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~---~~~~  233 (327)
T 3ohm_A          159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQ  233 (327)
T ss_dssp             EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS---GGGT
T ss_pred             EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh---hccC
Confidence            33444444  78999999999999999999999999999999765          455666666666665432   2223


Q ss_pred             CCcEEEEeeCCCCCCC--------------CcceecHHHHHHHHH---------HcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654          117 NFPFVVLGNKTDVDGG--------------NSRVVSEKKAKAWCA---------SKGNIPYFETSAKEGFNVEAAFECIA  173 (206)
Q Consensus       117 ~~pviiv~nK~D~~~~--------------~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~~~~~i~~l~~~i~  173 (206)
                      +.|+++++||+|+...              .......++...+..         ....+.+++|||+++.|++.+|..+.
T Consensus       234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~  313 (327)
T 3ohm_A          234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK  313 (327)
T ss_dssp             TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence            7899999999997532              011356667766643         11236788999999999999999999


Q ss_pred             HHHhhcCCC
Q 028654          174 KNALKNEPQ  182 (206)
Q Consensus       174 ~~~~~~~~~  182 (206)
                      +.+++..-.
T Consensus       314 ~~Il~~~l~  322 (327)
T 3ohm_A          314 DTILQLNLK  322 (327)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhHH
Confidence            999886543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.86  E-value=3.3e-22  Score=156.81  Aligned_cols=155  Identities=16%  Similarity=0.228  Sum_probs=102.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------CcccccceeeEEEEEEeC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNR--KFSN-----------------------------QYKATIGADFLTKEVQFE   53 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~   53 (206)
                      .+..++|+++|++++|||||+++|++.  .+..                             +...+.+.+.....+.. 
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-   82 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-   82 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-
Confidence            446799999999999999999999864  1111                             00122233332233333 


Q ss_pred             CeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh---HH---HHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654           54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNK  126 (206)
Q Consensus        54 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-viiv~nK  126 (206)
                       ....+.||||||+++|...+..++..+|++|+|+|+++...   ++   ....++..+ ...      ++| +++|+||
T Consensus        83 -~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~------~v~~iivviNK  154 (458)
T 1f60_A           83 -PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTL------GVRQLIVAVNK  154 (458)
T ss_dssp             -SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHT------TCCEEEEEEEC
T ss_pred             -CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHc------CCCeEEEEEEc
Confidence             33689999999999999989999999999999999986531   10   111222212 111      555 8999999


Q ss_pred             CCCCCCCcc--eecHHHHHHHHHHcC----CCcEEEeeccCCCCHHHH
Q 028654          127 TDVDGGNSR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       127 ~D~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~l  168 (206)
                      +|+.+....  ....+++..++...+    ..+++++||++|.|+.++
T Consensus       155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            999742111  123345555555554    278999999999998754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.85  E-value=1.9e-21  Score=137.83  Aligned_cols=160  Identities=17%  Similarity=0.144  Sum_probs=99.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc----------ccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~   76 (206)
                      ...+|+++|++|+|||||++++.+..+.....++.+.......+.+.+   .+.+|||||...          +......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            457899999999999999999988764333334444333333333333   567899999632          2222223


Q ss_pred             ce---ecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcC-
Q 028654           77 FY---RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-  150 (206)
Q Consensus        77 ~~---~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-  150 (206)
                      ++   ..++++++++|+++..+...  +..|+..          .+.|+++|+||+|+.....++...+.+..++.... 
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            33   46899999999987654332  2223221          16789999999998754222222345555555543 


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ...++++|++++.++++++++|.+.+.+.
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            35788999999999999999999877553

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=4.3e-22  Score=151.65  Aligned_cols=166  Identities=16%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcc--------cccceeeEEEEEEeCCeEEEEEEeeCCCc-------cc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   69 (206)
                      ...++|+|+|++|+|||||+++|++.... ....        ++.+.......+...+..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            45789999999999999999998765332 2211        33333333333344566678999999997       55


Q ss_pred             cccccc-------cceec-------------CcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           70 FQSLGV-------AFYRG-------------ADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        70 ~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      +.....       .++..             +|+++|+++.+ ..++..+. .|+..+    .    .+.|+|+|+||+|
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~----~~~piIlV~NK~D  185 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H----NKVNIVPVIAKAD  185 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C----S-SCEEEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c----cCCCEEEEEECCC
Confidence            555443       33332             24566666542 22333332 333322    2    2789999999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      +..........+.+..++...+ ++++++||+++.+ ++.|.++.+.+.+..|.
T Consensus       186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~  237 (361)
T 2qag_A          186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIPF  237 (361)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence            9754111111134555554444 7899999999998 88888888888776654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.84  E-value=3.2e-21  Score=161.81  Aligned_cols=165  Identities=14%  Similarity=0.075  Sum_probs=109.4

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   70 (206)
                      ....++|+++|++++|||||+++|.+..       +..       ....+.+.++....+.+......+.||||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3457899999999999999999998631       000       00111222222222233334467899999999999


Q ss_pred             ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHHH
Q 028654           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCAS  148 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~~  148 (206)
                      ...+...+..+|++|+|+|+++....+. ..++..+...       ++| +++|+||+|+.+.... ....+++..+...
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~  444 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ  444 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence            9888889999999999999997543222 2333333322       678 7899999999853111 1223455566655


Q ss_pred             cC----CCcEEEeeccCC--------CCHHHHHHHHHHHHh
Q 028654          149 KG----NIPYFETSAKEG--------FNVEAAFECIAKNAL  177 (206)
Q Consensus       149 ~~----~~~~~~~s~~~~--------~~i~~l~~~i~~~~~  177 (206)
                      .+    ..+++++||++|        .|+.++++.|.+.++
T Consensus       445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            54    378999999999        468888888887665

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.84  E-value=5.2e-22  Score=159.70  Aligned_cols=163  Identities=17%  Similarity=0.180  Sum_probs=88.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   54 (206)
                      ...++|+++|++++|||||+++|++...                               .....++++.+.....+..  
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence            4578999999999999999999964210                               0111223333333333332  


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SF---DNLNNWREEFLIQASPSDPENFP-FVVLGNKT  127 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~  127 (206)
                      ....+.||||||+.+|...+...+..+|++|+|+|+++..   .+   ......+..+ ...      ++| +|+|+||+
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~l------gip~iIvviNKi  325 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RAL------GISEIVVSVNKL  325 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HHS------SCCCEEEEEECG
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HHc------CCCeEEEEEecc
Confidence            3468899999999999999999999999999999998532   11   0111111111 111      555 99999999


Q ss_pred             CCCCCCcc--eecHHHHHHHH-HHcC----CCcEEEeeccCCCCHH--------------HHHHHHHHHHh
Q 028654          128 DVDGGNSR--VVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVE--------------AAFECIAKNAL  177 (206)
Q Consensus       128 D~~~~~~~--~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~--------------~l~~~i~~~~~  177 (206)
                      |+.+....  ....+++..+. ...+    .++++++||++|.|+.              .|++.|...++
T Consensus       326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            99753211  11223333443 3333    2479999999999998              67777665443

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=2.2e-20  Score=141.29  Aligned_cols=123  Identities=13%  Similarity=0.147  Sum_probs=91.7

Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEe
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG  124 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~  124 (206)
                      ..+.+.+|||+|++.++..+..+++.++++|+|+|++          +..++.....|+..+....   ..++.|+++|+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg  257 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL  257 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence            5689999999999999999999999999999999998          6778888888887775432   12378999999


Q ss_pred             eCCCCCCCCc-------------------ceecHHHHHHHHHH---------------cCCCcEEEeeccCCCCHHHHHH
Q 028654          125 NKTDVDGGNS-------------------RVVSEKKAKAWCAS---------------KGNIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       125 nK~D~~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~l~~  170 (206)
                      ||+|+.....                   .....++...++..               .....+++|||+++.|++++|+
T Consensus       258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~  337 (354)
T 2xtz_A          258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK  337 (354)
T ss_dssp             ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred             ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence            9999743100                   00124555555332               1223468999999999999999


Q ss_pred             HHHHHHhhcC
Q 028654          171 CIAKNALKNE  180 (206)
Q Consensus       171 ~i~~~~~~~~  180 (206)
                      ++.+.+.+..
T Consensus       338 ~v~~~I~~~~  347 (354)
T 2xtz_A          338 LVDETLRRRN  347 (354)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887643

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=1.1e-21  Score=154.23  Aligned_cols=158  Identities=18%  Similarity=0.208  Sum_probs=89.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------CcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSN-----------------------------QYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (206)
                      ...++|+++|+.++|||||+++|+...  +..                             +...+.+.+.....+...+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            456899999999999999999997421  110                             0011222222222333333


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVD  130 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  130 (206)
                        ..+.||||||+++|...+...+..+|++|+|+|+++..   +|+....+...+.....    .++| +++|+||+|+.
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEP  194 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTST
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCC
Confidence              67899999999999999999999999999999999752   22111111111111111    1667 99999999996


Q ss_pred             CCCc----ceecHHHHHHHHHHc-C-----CCcEEEeeccCCCCHHHHH
Q 028654          131 GGNS----RVVSEKKAKAWCASK-G-----NIPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       131 ~~~~----~~~~~~~~~~~~~~~-~-----~~~~~~~s~~~~~~i~~l~  169 (206)
                      ....    .....+++..++... +     ..+++++||++|.|+.+++
T Consensus       195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            5321    112233455555544 2     3679999999999998765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=2.1e-21  Score=144.76  Aligned_cols=160  Identities=15%  Similarity=0.221  Sum_probs=98.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCC------cccc----------------------ccee--------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ------YKAT----------------------IGAD--------------   44 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~------~~~~----------------------~~~~--------------   44 (206)
                      ..++|+|+|.+|+|||||+|+|++..+.+.      ..++                      ++.+              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            467999999999999999999999876421      1121                      0000              


Q ss_pred             -------eEEEEEEe-CCeEEEEEEeeCCCcc-------------ccccccccceecCcEEE-EEEECCChhhHHHHHHH
Q 028654           45 -------FLTKEVQF-EDRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNVMKSFDNLNNW  102 (206)
Q Consensus        45 -------~~~~~~~~-~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~~~~~~~~~  102 (206)
                             .....+.+ ......+.||||||..             .+......++..++.++ +|+|+++..+......+
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                   00000000 0012578999999954             23445556777888666 79999874433332233


Q ss_pred             HHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH--cCCCcEEEeeccCCCCHHHHHHHHHHH
Q 028654          103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECIAKN  175 (206)
Q Consensus       103 ~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~i~~l~~~i~~~  175 (206)
                      ...+    ..   .+.|+++|+||+|+.+...  ...+.++.....  .+..+++++||+++.|+++++++|.+.
T Consensus       185 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          185 AKEV----DP---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHH----CT---TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHh----CC---CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            3333    21   2679999999999976422  122222210001  122467889999999999999999874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.83  E-value=1.1e-19  Score=137.89  Aligned_cols=122  Identities=12%  Similarity=0.114  Sum_probs=87.9

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK  126 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK  126 (206)
                      +.+.+|||+|++.++..+..++.+++++|+|+|+++          ..++.....|+..+....   ...+.|+++++||
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~---~~~~~piILv~NK  277 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VFSNVSIILFLNK  277 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEEC
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch---hhCCCCEEEEEEC
Confidence            789999999999999999999999999999999998          667888777877776431   1237899999999


Q ss_pred             CCCCCCC--------------cceecHHHHHHHHH-------H---cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          127 TDVDGGN--------------SRVVSEKKAKAWCA-------S---KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       127 ~D~~~~~--------------~~~~~~~~~~~~~~-------~---~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +|+....              ......++...++.       .   ...+.+++|||+++.|++++|+++.+.+.+..-
T Consensus       278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            9985210              01145566666542       1   123678999999999999999999998876543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.82  E-value=3.3e-19  Score=145.94  Aligned_cols=119  Identities=19%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCC--CC------C----------CcccccceeeEEEEEEeCCeEEEEEEeeCC
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRK--FS------N----------QYKATIGADFLTKEVQFEDRLFTLQIWDTA   65 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   65 (206)
                      ......+|+++|++|+|||||+++|+...  +.      .          ......+.......+.+.+  ..+.|||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTP   85 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTP   85 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECc
Confidence            34568899999999999999999998421  10      0          0011222222233333443  688999999


Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      |+.++...+..++..+|++|+|+|+++.........|.. +...       ++|+++|+||+|+...
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence            999998888999999999999999998777666555543 3221       7799999999998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.81  E-value=5.5e-19  Score=136.12  Aligned_cols=164  Identities=19%  Similarity=0.140  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc----ccccccc---eecCc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGVAF---YRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~~~~---~~~~d   82 (206)
                      .|+++|++|+|||||++++.+........+.++.......+.+.+ ...+.+||+||..+.    ......+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            578999999999999999988754322233333444444454443 246789999996432    1122222   34689


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      .+++++|++ ...+..+..+..++..+....  .+.|.++|+||+|+...    ...+.+.......+ .+++.+||+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~g  309 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALTG  309 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCCc
Confidence            999999998 566677777776665542100  14689999999998752    23344444444433 78999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCC
Q 028654          163 FNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~~~  182 (206)
                      .|+++++++|.+.+.+.++.
T Consensus       310 ~gi~eL~~~i~~~l~~~~~~  329 (416)
T 1udx_A          310 AGLPALKEALHALVRSTPPP  329 (416)
T ss_dssp             TTHHHHHHHHHHHHHTSCCC
T ss_pred             cCHHHHHHHHHHHHHhcccc
Confidence            99999999999999876653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.81  E-value=4.2e-19  Score=129.90  Aligned_cols=123  Identities=15%  Similarity=0.109  Sum_probs=85.0

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccccee-----
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-----   79 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-----   79 (206)
                      +..++|+++|.+|+|||||+|+|++..+. ....+..+.......+...+  ..+.+|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            45799999999999999999999988753 23333334444455555555  58899999998877655544443     


Q ss_pred             ----cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           80 ----GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        80 ----~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                          .+|++++|++++..........|+..+...+...  ...|+++|+||+|+...
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence                7899999999876442222245666666554321  12489999999998643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=5.2e-20  Score=137.85  Aligned_cols=120  Identities=14%  Similarity=0.161  Sum_probs=91.4

Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECC----------ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEee
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN  125 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~n  125 (206)
                      .+.+.+||++|++.++..+..+++.++++|+|+|++          +..++.....|+..+.....   ..+.|+++++|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv~N  236 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIFLN  236 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEEEE
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEEEE
Confidence            478999999999999999999999999999999998          66777777777777654322   23789999999


Q ss_pred             CCCCCCCC-------------cceecHHHHHHHHH-Hc-------------------------CCCcEEEeeccCCCCHH
Q 028654          126 KTDVDGGN-------------SRVVSEKKAKAWCA-SK-------------------------GNIPYFETSAKEGFNVE  166 (206)
Q Consensus       126 K~D~~~~~-------------~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+....             ......++...+.. ..                         ..+.+++|||+++.+++
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            99975310             00113444443332 22                         23678999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      .+|..+.+.+++
T Consensus       317 ~vF~~v~~~Il~  328 (340)
T 4fid_A          317 RVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999887

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=9.9e-19  Score=143.17  Aligned_cols=166  Identities=13%  Similarity=0.158  Sum_probs=105.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEE-------EEEEe-------------------------
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLT-------KEVQF-------------------------   52 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~-------~~~~~-------------------------   52 (206)
                      ...++|+|+|.+|+|||||+|+|++..+.. ...+++......       ....+                         
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~  146 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA  146 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence            357899999999999999999999887542 333333110000       01101                         


Q ss_pred             ---------------------CCeE--EEEEEeeCCCccc---cccccccceecCcEEEEEEECCChhhHHHHHHHHHHH
Q 028654           53 ---------------------EDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF  106 (206)
Q Consensus        53 ---------------------~~~~--~~~~i~D~~G~~~---~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~  106 (206)
                                           ....  ..+.||||||...   .......++..+|++++|+|+++..+......|...+
T Consensus       147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l  226 (695)
T 2j69_A          147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI  226 (695)
T ss_dssp             HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred             HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence                                 0000  2588999999544   3345567788999999999999877766655443332


Q ss_pred             HHhcCCCCCCCCcEEEEeeCCCCCCCCcc-eec---HH----HHHHH----HHHc--------CCCcEEEeecc------
Q 028654          107 LIQASPSDPENFPFVVLGNKTDVDGGNSR-VVS---EK----KAKAW----CASK--------GNIPYFETSAK------  160 (206)
Q Consensus       107 ~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~---~~----~~~~~----~~~~--------~~~~~~~~s~~------  160 (206)
                      .    .   .+.|+++|+||+|+...... ...   .+    .+...    ....        ...+++++||+      
T Consensus       227 ~----~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~  299 (695)
T 2j69_A          227 K----G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR  299 (695)
T ss_dssp             T----T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred             H----h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence            1    1   15689999999998643100 000   01    11111    1111        12479999999      


Q ss_pred             --------CCCCHHHHHHHHHHHHhh
Q 028654          161 --------EGFNVEAAFECIAKNALK  178 (206)
Q Consensus       161 --------~~~~i~~l~~~i~~~~~~  178 (206)
                              ++.|+++++..|.+.+.+
T Consensus       300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          300 LKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCchhhhhccCHHHHHHHHHHHHHH
Confidence                    999999999999887754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.79  E-value=6.5e-20  Score=140.96  Aligned_cols=85  Identities=14%  Similarity=0.081  Sum_probs=48.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEE---------------------eCC-eEEEEEEeeCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~G   66 (206)
                      ++|+++|.+|+|||||+|+|++........+.++.........                     +.+ ....+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            4899999999999999999998764333333333332222211                     122 246899999999


Q ss_pred             cccc----c---cccccceecCcEEEEEEECCCh
Q 028654           67 QERF----Q---SLGVAFYRGADCCVLVYDVNVM   93 (206)
Q Consensus        67 ~~~~----~---~~~~~~~~~~d~vi~v~d~~~~   93 (206)
                      ....    .   ......++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            6431    1   2223456889999999999875

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=1.8e-18  Score=137.41  Aligned_cols=117  Identities=19%  Similarity=0.241  Sum_probs=78.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC----------------------cccccceeeEEEEEEeCCeEEEEEEee
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------------------YKATIGADFLTKEVQFEDRLFTLQIWD   63 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D   63 (206)
                      ...++|+++|++++|||||+++|+.......                      ...+.+.......+.+.+  ..+.+||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            3578999999999999999999986321100                      011111111122233333  6889999


Q ss_pred             CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      |||+.++...+..++..+|++|+|+|+++...... ..    +...+..   .++|+++|+||+|+...
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~----~~~~~~~---~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK----LMEVTRL---RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH----HHHHHTT---TTCCEEEEEECTTSCCS
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH----HHHHHHH---cCCCEEEEEcCcCCccc
Confidence            99999998888889999999999999987543222 22    2222222   27899999999999764

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.79  E-value=1.3e-18  Score=141.95  Aligned_cols=115  Identities=16%  Similarity=0.143  Sum_probs=80.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------------------ccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ....+|+++|+.|+|||||+++|.+.......                  ....+.......+...  .+.+.+|||||+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~   84 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY   84 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence            34678999999999999999999843321000                  1112222222333333  478899999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      .++......++..+|++++|+|+++...... ..++..+...       +.|+++|+||+|+.
T Consensus        85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~-------~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           85 GDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL-------GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred             cchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc-------cCCEEEEecCCchh
Confidence            9998888899999999999999887544333 2333433321       67999999999987

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.79  E-value=1.1e-19  Score=136.49  Aligned_cols=115  Identities=8%  Similarity=0.084  Sum_probs=70.2

Q ss_pred             EEEEEeeCCCccc-------------cccccccceecCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEE
Q 028654           57 FTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNVMKSF-DNLNNWREEFLIQASPSDPENFPFVV  122 (206)
Q Consensus        57 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pvii  122 (206)
                      ..+.||||||...             +......++..+|++++|+|.++.... .....+...+    ..   .+.|+++
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~---~~~~~i~  203 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DP---EGKRTIG  203 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CS---SCSSEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CC---CCCcEEE
Confidence            4689999999643             344555678899999999997432211 1111222222    21   2679999


Q ss_pred             EeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee---ccC---CCCHHHHHHHHHHHHhhcCC
Q 028654          123 LGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS---AKE---GFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       123 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~---~~~i~~l~~~i~~~~~~~~~  181 (206)
                      |+||+|+.....  ...+.+....... ...+++++   +.+   +.|+.++++.+.+.+...++
T Consensus       204 v~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          204 VITKLDLMDKGT--DAMEVLTGRVIPL-TLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             EEECTTSSCSSC--CCHHHHTTSSSCC-TTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             EEcCcccCCcch--HHHHHHhCCCccC-CCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            999999986532  1222222100011 13455554   445   78999999999998877655

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.79  E-value=1.3e-19  Score=134.83  Aligned_cols=165  Identities=16%  Similarity=0.259  Sum_probs=86.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC-CCCCCcc--------cccceeeEEEEEEeCCeEEEEEEeeCCCc-------cc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR-KFSNQYK--------ATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~   69 (206)
                      ...++|+++|++|+|||||+++|++. .+.....        ++.............+....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34689999999999999999998875 3332221        11111111222222344568999999997       44


Q ss_pred             cccccc-------ccee-------------cCcEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           70 FQSLGV-------AFYR-------------GADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        70 ~~~~~~-------~~~~-------------~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      +.....       .++.             .+++++++.+++.. +++... .++..+    ..    +.++++|+||+|
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l----~~----~~~iilV~~K~D  166 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI----HN----KVNIVPVIAKAD  166 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH----TT----TSCEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH----Hh----cCCEEEEEEeCC
Confidence            443332       2222             23456666665421 122211 222222    21    568999999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +..........+++..++...+ ++++++||+++ +++++|.++.+.+.+..|
T Consensus       167 l~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          167 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            9753222234456677777776 89999999999 999999999999876554

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.78  E-value=8.1e-18  Score=137.91  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=82.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------cccccceeeEEEEEEeC-----CeEEEEEEe
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSNQ----------------YKATIGADFLTKEVQFE-----DRLFTLQIW   62 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i~   62 (206)
                      ...++|+++|+.++|||||+++|+...  +...                .....+.......+.+.     +..+.+.||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            457899999999999999999997531  1100                01112222222223332     234789999


Q ss_pred             eCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        63 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ||||+.+|...+..+++.+|++|+|+|+++.........| .....       .++|+++|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-------~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-------YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-------cCCCEEEEEeCCCcccc
Confidence            9999999988888999999999999999986554443333 22221       17799999999998754

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.78  E-value=6.2e-18  Score=138.48  Aligned_cols=117  Identities=21%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc--CCCCC----------------CcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVN--RKFSN----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ....+|+++|++|+|||||+++|+.  +.+..                ...+..+.......+.+.+  ..+.||||||+
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~   85 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH   85 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence            4578999999999999999999985  22110                0011222222223344443  67899999999


Q ss_pred             cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        68 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      .++......+++.+|++++|+|+++..+......|. .+...       +.|+++|+||+|+...
T Consensus        86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~-------~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY-------GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT-------TCCEEEEEECTTSTTC
T ss_pred             cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc-------CCCEEEEEECCCcccc
Confidence            999888888999999999999999876666554443 33321       7799999999999764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=2.9e-19  Score=136.46  Aligned_cols=157  Identities=11%  Similarity=0.156  Sum_probs=97.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEE--------------------------------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK--------------------------------------   48 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------   48 (206)
                      ...+|+|+|.+|||||||+|+|.+..+.+......+......                                      
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            345999999999999999999999876432222221110000                                      


Q ss_pred             --------------EEEe-CCeEEEEEEeeCCCcccc-------------ccccccceecCcEEEEEEECCChhhHHHHH
Q 028654           49 --------------EVQF-EDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNVMKSFDNLN  100 (206)
Q Consensus        49 --------------~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~  100 (206)
                                    .+.+ ......+.+|||||...+             ......++..+|++|+++|..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                          0000 011235889999997665             445667889999999999876533221  2


Q ss_pred             HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Q 028654          101 NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI  172 (206)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i  172 (206)
                      .|+..+... ..   .+.|+++|+||+|+...  .....+....+....+ .+++.+++..+.++++.+..+
T Consensus       191 ~~~~l~~~~-~~---~~~~~i~V~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          191 DAIKISREV-DP---SGDRTFGVLTKIDLMDK--GTDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             HHHHHHHHS-CT---TCTTEEEEEECGGGCCT--TCCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHh-cc---cCCCEEEEEeCCccCCC--cccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHH
Confidence            233322222 22   26799999999999865  2233333333222233 788999999888887655543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.77  E-value=6.2e-18  Score=134.91  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC----------------------CCCcccccceeeEEEEEEeCCeEEEEEEeeC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF----------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDT   64 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   64 (206)
                      +..+|+|+|+.++|||||..+|+....                      ..+...+.+.......+.+.+  ..+.|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            467999999999999999999863211                      123333444444445555655  67889999


Q ss_pred             CCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        65 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      ||+.+|.......++-+|++|+|+|+...-..+...-| .....+       ++|+++++||+|....+
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~-------~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR-------ATPVMTFVNKMDREALH  168 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT-------TCCEEEEEECTTSCCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh-------CCceEEEEecccchhcc
Confidence            99999999999999999999999999975544443344 333222       88999999999987654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=1.3e-17  Score=122.49  Aligned_cols=121  Identities=17%  Similarity=0.146  Sum_probs=79.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccccccc---------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA---------   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------   76 (206)
                      ..++|+++|.+|+|||||+|+|++..+. ....+..+...........+  ..+.+|||||..++......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            4789999999999999999999987753 22222333333333333333  67899999997665432221         


Q ss_pred             ceecCcEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           77 FYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ....+|++++|+|++... +.. ...|+..+...+...  ...|+++|+||+|+.+.
T Consensus       116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred             hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence            124699999999987532 222 245666665543210  02589999999998754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.73  E-value=1.8e-19  Score=137.14  Aligned_cols=159  Identities=14%  Similarity=0.188  Sum_probs=91.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------cccc----------------------cee--------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------KATI----------------------GAD--------------   44 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~~----------------------~~~--------------   44 (206)
                      ...+|+|+|.+|+|||||+|+|++..+.+..      .++.                      +.+              
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999998764211      1210                      000              


Q ss_pred             -------eEEEEEEeC-CeEEEEEEeeCCCcc-------------ccccccccceecCc-EEEEEEECCChhhHHHHHHH
Q 028654           45 -------FLTKEVQFE-DRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNW  102 (206)
Q Consensus        45 -------~~~~~~~~~-~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~vi~v~d~~~~~~~~~~~~~  102 (206)
                             .....+.+. .....+.||||||..             .+......++..++ +++++.|++..........+
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i  189 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV  189 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence                   000001110 112578999999953             23344555665555 55556666542221111123


Q ss_pred             HHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH--HHHHcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654          103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       103 ~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                      +..+    ..   .+.|+++|+||+|+.+...  ...+.++.  +....+..+++++||+++.|++++++.+.+
T Consensus       190 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          190 AKEV----DP---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHH----CT---TCTTEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHh----Cc---CCCceEEEeccccccCcch--hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            2222    22   2679999999999976422  11121110  000112245788999999999999999877

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=5.2e-18  Score=130.81  Aligned_cols=164  Identities=15%  Similarity=0.171  Sum_probs=78.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc--------ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------   71 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------   71 (206)
                      ...++|+++|++|+|||||++.|++..+....        .++.........+...+....+++||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34678999999999999999999987653111        1111111111111223334578999999965421      


Q ss_pred             -c------------------ccccceecCc--EEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           72 -S------------------LGVAFYRGAD--CCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        72 -~------------------~~~~~~~~~d--~vi~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                       .                  ....++..++  +++|+.+++. .++... ..|+..+.        .+.|+|+|+||+|+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dl  179 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--------EKVNIIPLIAKADT  179 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT--------TTSEEEEEEESTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh--------ccCcEEEEEEcccC
Confidence             1                  1123444444  4555555531 122222 24555442        16799999999999


Q ss_pred             CCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ..........+.+..++...+ ++++++|++++.++.+++..+.+.++-.
T Consensus       180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iPfa  228 (418)
T 2qag_C          180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLA  228 (418)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------CCEE
T ss_pred             ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence            754211122255666666665 8899999999999999888887765443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.72  E-value=4.8e-18  Score=129.31  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=70.0

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      +.+.|+||||...   .....+..+|++++|+|+...+....+.            ......|+++|+||+|+.......
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~------------~~~~~~p~ivVlNK~Dl~~~~~~~  236 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK------------KGVLELADIVVVNKADGEHHKEAR  236 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC------------TTSGGGCSEEEEECCCGGGHHHHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH------------HhHhhcCCEEEEECCCCcChhHHH
Confidence            5789999999432   2223457899999999987644332211            011146899999999986431111


Q ss_pred             ecHHHHHHHHHHc-----C-CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          137 VSEKKAKAWCASK-----G-NIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       137 ~~~~~~~~~~~~~-----~-~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ...+++.......     . ..+++++||++|.|+++++++|.+.+..
T Consensus       237 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          237 LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222222222111     1 3689999999999999999999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=7.6e-18  Score=120.16  Aligned_cols=157  Identities=17%  Similarity=0.121  Sum_probs=93.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc------ccccce--------eeEEEEEEe----------------CCeE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------KATIGA--------DFLTKEVQF----------------EDRL   56 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~   56 (206)
                      ...+|+++|.+|+|||||+++|.........      .+..+.        ......+..                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            4578999999999999999999865211100      010000        000111111                1122


Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      ..+.+|||+|.......   +....+.+++|+|+.+....  ...+...+          +.|+++|+||+|+...  ..
T Consensus       109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~--~~  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEA--VG  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHH--HT
T ss_pred             CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcc--hh
Confidence            46788999985211111   11246889999998764321  11111111          4689999999998642  11


Q ss_pred             ecHHHHHHHHHHcC-CCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          137 VSEKKAKAWCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       137 ~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ...+++.......+ ..+++++|+++|.|+++++++|.+.+.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          172 ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            23455555544432 478999999999999999999999886544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=3.1e-16  Score=118.49  Aligned_cols=150  Identities=17%  Similarity=0.070  Sum_probs=91.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccccc-
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ-   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~-   71 (206)
                      .++|+++|.+|+|||||+|+|++........+.++.......+.+.+.               ...+.+|||||..... 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            478999999999999999999987654333443333333333444432               1478999999976542 


Q ss_pred             ------cccccceecCcEEEEEEECCCh----------hhHHHHHHHHHHHH----------------------------
Q 028654           72 ------SLGVAFYRGADCCVLVYDVNVM----------KSFDNLNNWREEFL----------------------------  107 (206)
Q Consensus        72 ------~~~~~~~~~~d~vi~v~d~~~~----------~~~~~~~~~~~~~~----------------------------  107 (206)
                            ......++.+|++++|+|+++.          +.+.++..+..++.                            
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence                  1222346889999999999862          23333322222210                            


Q ss_pred             --------HhcC--------------------CCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654          108 --------IQAS--------------------PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus       108 --------~~~~--------------------~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                              ..+.                    ......+|+++++|+.|....  .....+.+..++...+ .+++++||
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~--~n~~~~~v~~~~~~~~-~~~i~~sA  238 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFE--NNPYLDRVREIAAKEG-AVVVPVCA  238 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSS--SCHHHHHHHHHHHHTT-CEEEEECH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccccc--ccHHHHHHHHHHHHcC-CCEEEech
Confidence                    0000                    001224799999999996431  2245666777776666 78999997


Q ss_pred             c
Q 028654          160 K  160 (206)
Q Consensus       160 ~  160 (206)
                      +
T Consensus       239 ~  239 (363)
T 1jal_A          239 A  239 (363)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.70  E-value=2.5e-17  Score=137.39  Aligned_cols=118  Identities=20%  Similarity=0.234  Sum_probs=84.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC------------CC----CCccccccee--eEEEEEE------------eCC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK------------FS----NQYKATIGAD--FLTKEVQ------------FED   54 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~------------~~----~~~~~~~~~~--~~~~~~~------------~~~   54 (206)
                      ....++|+++|+.++|||||+++|+...            +.    ....+..+..  .....+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3457899999999999999999998641            10    0111111221  1122222            134


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      ..+.+.||||||+.+|...+..+++.+|++|+|+|+++..+.+....|.... .       .++|+++|+||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~-------~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G-------ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H-------TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H-------cCCCeEEEEECCCcc
Confidence            4789999999999999999999999999999999999887777655554322 1       167999999999986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=1.5e-17  Score=123.80  Aligned_cols=134  Identities=19%  Similarity=0.128  Sum_probs=104.0

Q ss_pred             HHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChh-hHHHHH
Q 028654           23 SLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLN  100 (206)
Q Consensus        23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~  100 (206)
                      +|+.++..+.|. ..+.+|.+..+. ..+..++   .+.+||+  ++++..++..+++++|++|+|+|++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577777777777 778888885443 3332222   6889999  8899999999999999999999999987 688888


Q ss_pred             HHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC-CcEEEeeccCCCCHHHHHHHHH
Q 028654          101 NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVEAAFECIA  173 (206)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~l~~~i~  173 (206)
                      .|+..+..       .++|+++|+||+|+.+.  +.  .++...++..... .+++++||+++.|++++|..+.
T Consensus       106 ~~l~~~~~-------~~~piilv~NK~DL~~~--~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK-------NELETVMVINKMDLYDE--DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH-------TTCEEEEEECCGGGCCH--HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH-------CCCCEEEEEeHHHcCCc--hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99887654       17899999999999753  22  1445555555432 6899999999999999998764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.67  E-value=5.5e-18  Score=128.52  Aligned_cols=104  Identities=13%  Similarity=0.085  Sum_probs=62.3

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      +.+.|+||+|....   .......+|++++|+|++.......+..   .+         ...|.++|+||+|+.+..   
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---------l~~~~ivVlNK~Dl~~~~---  228 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI---------IEMADLVAVTKSDGDLIV---  228 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHH---
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---------HhcCCEEEEeeecCCCch---
Confidence            46789999995321   1234568999999999986432221111   11         145789999999986321   


Q ss_pred             ecHHHHHHHHHH---------cCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          137 VSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       137 ~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ........+...         ....+++++|++++.|+++++++|.+.+..
T Consensus       229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            101112222111         113578999999999999999999987643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.67  E-value=2e-17  Score=134.42  Aligned_cols=166  Identities=16%  Similarity=0.180  Sum_probs=109.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK--FS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      ..+|+|+|+.++|||||..+|+...  ..                .+...+.+.......+.+.  ...+.|+||||+.+
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~--~~~iNlIDTPGH~D   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE--NTKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS--SCBCCCEECCCSSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC--CEEEEEEECCCcHH
Confidence            3589999999999999999986321  10                0111122222222223333  36788999999999


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHH--------
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKK--------  141 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~--------  141 (206)
                      |.......++-+|++|+|+|+...-..+...-| ......       ++|.++++||+|....+......+.        
T Consensus        80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~-------~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~  151 (638)
T 3j25_A           80 FLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM-------GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEI  151 (638)
T ss_dssp             THHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH-------TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc-------CCCeEEEEeccccccCCHHHHHHHHHHHhCCCc
Confidence            999999999999999999999874433332233 333332       7899999999998765321110000        


Q ss_pred             ---------------------------------HHH------------------HHHHcCCCcEEEeeccCCCCHHHHHH
Q 028654          142 ---------------------------------AKA------------------WCASKGNIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       142 ---------------------------------~~~------------------~~~~~~~~~~~~~s~~~~~~i~~l~~  170 (206)
                                                       .+.                  ........|++..||+++.|++.|++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd  231 (638)
T 3j25_A          152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE  231 (638)
T ss_dssp             CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred             cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence                                             000                  01112236788899999999999999


Q ss_pred             HHHHHHhhcCCCC
Q 028654          171 CIAKNALKNEPQE  183 (206)
Q Consensus       171 ~i~~~~~~~~~~~  183 (206)
                      .|.+.++......
T Consensus       232 ~i~~~~p~p~~~~  244 (638)
T 3j25_A          232 VITNKFYSSTHRG  244 (638)
T ss_dssp             HHHHSCCCSGGGS
T ss_pred             hhhccccCcccch
Confidence            9998776644433

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.67  E-value=2.1e-15  Score=124.08  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--------------C----CCCcccccceeeEEEEEEeCC-----eEEEEEEe
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--------------F----SNQYKATIGADFLTKEVQFED-----RLFTLQIW   62 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--------------~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~   62 (206)
                      .+..+|+|+|+.++|||||..+|+...              +    ..+.....+.......+.+.+     ..+.+.|+
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            457899999999999999999986321              0    112233333333334444432     35789999


Q ss_pred             eCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        63 D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ||||+.+|.......++-+|++|+|+|+...-..+...-| ......       ++|.++++||+|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~-------~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY-------GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH-------TCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc-------CCCeEEEEccccccCc
Confidence            9999999999999999999999999999875443333333 333322       7899999999998654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.66  E-value=7.9e-17  Score=131.62  Aligned_cols=165  Identities=15%  Similarity=0.161  Sum_probs=98.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-Cccccccee-----------------------------------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGAD-----------------------------------------   44 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~-----------------------------------------   44 (206)
                      ...+|+|+|.+++|||||+|+|++..+.+ ....++...                                         
T Consensus        50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            45799999999999999999999987632 111111100                                         


Q ss_pred             ---------eEEEEEEeCCeEEEEEEeeCCCccc-------------cccccccce-ecCcEEEEEEECCChhhHHHHHH
Q 028654           45 ---------FLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNVMKSFDNLNN  101 (206)
Q Consensus        45 ---------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~  101 (206)
                               .....+.. .....+.|+||||-..             +......++ ..+|++++|+|++..........
T Consensus       130 g~~~~is~~~i~l~I~~-P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             CSTTCCCSCCEEEEEEE-TTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             CCCCcccccceEEEEec-CCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                     00000100 0112578999999432             222333344 57899999999986432222222


Q ss_pred             HHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH-H-HHHcCCCcEEEeeccCCCCHHHHHHHHHHH---H
Q 028654          102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-W-CASKGNIPYFETSAKEGFNVEAAFECIAKN---A  176 (206)
Q Consensus       102 ~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~---~  176 (206)
                      +...+.    .   .+.|+++|+||+|+......  ..+.... . ....+..+++++||+++.|+++|++.|.+.   +
T Consensus       209 ll~~L~----~---~g~pvIlVlNKiDlv~~~~~--~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ff  279 (772)
T 3zvr_A          209 IAKEVD----P---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  279 (772)
T ss_dssp             HHHHHC----T---TCSSEEEEEECTTSSCTTCC--SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHH
T ss_pred             HHHHHH----h---cCCCEEEEEeCcccCCcchh--hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhc
Confidence            333332    1   16799999999999865322  1111110 0 001123467889999999999999999873   4


Q ss_pred             hhcCC
Q 028654          177 LKNEP  181 (206)
Q Consensus       177 ~~~~~  181 (206)
                      .+.++
T Consensus       280 pe~P~  284 (772)
T 3zvr_A          280 LSHPS  284 (772)
T ss_dssp             HHCTT
T ss_pred             cCCcc
Confidence            44444

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.66  E-value=3.4e-16  Score=119.81  Aligned_cols=128  Identities=12%  Similarity=0.091  Sum_probs=96.4

Q ss_pred             EEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCC----------hhhHHHHHHHHHHHHHhcCCCCCCC
Q 028654           48 KEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPEN  117 (206)
Q Consensus        48 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  117 (206)
                      ..+.+.+  +.+.+|||+|++.++..+..+++.++++|+|+|+++          ..++.....|+..+....   ...+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~  284 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRT  284 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSS
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCC
Confidence            3445554  789999999999999999999999999999999998          788888888888876532   2237


Q ss_pred             CcEEEEeeCCCCCCCCc----------------------------ceecHHHHHHHH-----HHc-------CCCcEEEe
Q 028654          118 FPFVVLGNKTDVDGGNS----------------------------RVVSEKKAKAWC-----ASK-------GNIPYFET  157 (206)
Q Consensus       118 ~pviiv~nK~D~~~~~~----------------------------~~~~~~~~~~~~-----~~~-------~~~~~~~~  157 (206)
                      .|+++|+||+|+.....                            .....++...|+     ...       ..+.+++|
T Consensus       285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T  364 (402)
T 1azs_C          285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  364 (402)
T ss_dssp             CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred             CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence            89999999999743200                            000134444442     211       23567899


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      ||+++.|++++|.++.+.+.+..
T Consensus       365 SA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          365 CAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCcCHHHHHHHHHHHHHHHH
Confidence            99999999999999998887653

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.65  E-value=6.4e-16  Score=117.41  Aligned_cols=84  Identities=23%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC-------------------eEEEEEEeeCCCccc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~   69 (206)
                      ++|+++|.+|+|||||+|+|.+........+..+.........+.+                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5899999999999999999997653222223323322222223321                   235789999999765


Q ss_pred             ccc-------ccccceecCcEEEEEEECCC
Q 028654           70 FQS-------LGVAFYRGADCCVLVYDVNV   92 (206)
Q Consensus        70 ~~~-------~~~~~~~~~d~vi~v~d~~~   92 (206)
                      ...       .....++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            421       22234688999999999985

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.65  E-value=3e-17  Score=117.44  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeE------------EEEEEeC-Ce------------------
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL------------TKEVQFE-DR------------------   55 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   55 (206)
                      ..++|+++|.+|||||||+++|....+...+.++...++.            ...+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4689999999999999999999876544323233222211            1111111 10                  


Q ss_pred             -EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654           56 -LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (206)
Q Consensus        56 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  134 (206)
                       ...+.++|++|.-....   .+-...+..+.++|.........  .+...+          +.|.++|+||+|+...  
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~----------~~~~iiv~NK~Dl~~~--  179 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KHPGIM----------KTADLIVINKIDLADA--  179 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TCHHHH----------TTCSEEEEECGGGHHH--
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hhhhHh----------hcCCEEEEeccccCch--
Confidence             11455666666211110   11122345567777532111110  001111          4588999999998642  


Q ss_pred             ceecHHHHHHHHHHc-CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          135 RVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      .....+++..++... ...+++++||++|.|++++|++|.+.+.+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            223455666665544 24789999999999999999999988765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=1.8e-16  Score=126.58  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=78.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceeeEEEEE-----EeC-----------------C-----e
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEV-----QFE-----------------D-----R   55 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~-----~~~-----------------~-----~   55 (206)
                      ...++|+|+|.+|+|||||+|+|++..+.   ....++++.......-     ..+                 +     .
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            34689999999999999999999998763   2333333211100000     000                 0     0


Q ss_pred             -E---------EEEEEeeCCCccc-----------cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC
Q 028654           56 -L---------FTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD  114 (206)
Q Consensus        56 -~---------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  114 (206)
                       .         ..+.||||||...           +......++..+|++++|+|+++.........|+..+..      
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~------  216 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG------  216 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT------
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh------
Confidence             0         2588999999654           334455677889999999999875433444455544421      


Q ss_pred             CCCCcEEEEeeCCCCCCC
Q 028654          115 PENFPFVVLGNKTDVDGG  132 (206)
Q Consensus       115 ~~~~pviiv~nK~D~~~~  132 (206)
                       .+.|+++|+||+|+...
T Consensus       217 -~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          217 -HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             -CGGGEEEEEECGGGSCH
T ss_pred             -cCCCEEEEEECCCccCH
Confidence             15789999999999753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.64  E-value=1.6e-16  Score=120.32  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=65.6

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      +.+.|+||||.......   ....+|++++|+|++.......+..   ..         .+.|.++|+||+|+.+.....
T Consensus       149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~~  213 (341)
T 2p67_A          149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNVA  213 (341)
T ss_dssp             CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHHH
T ss_pred             CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHHH
Confidence            57899999996543322   3578999999999975432211111   00         045789999999997531111


Q ss_pred             ecHHHHHHHHHHcC------CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          137 VSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ...+++.......+      ..+++++||++|.|+++++++|.+.+.
T Consensus       214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11112222222222      357899999999999999999999775

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.63  E-value=6.2e-15  Score=111.99  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=84.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceec
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRG   80 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~   80 (206)
                      -.+|+++|.||+|||||+|+|++........+++|.+.....+.+.+  .+++|+||||-....       ......++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            45899999999999999999999877677778888888888888887  567889999943221       122344578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        81 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      +|++++|+|++++..  .......++.....  .....|.++++||.|..
T Consensus       150 ad~il~vvD~~~p~~--~~~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          150 CNLLFIILDVNKPLH--HKQIIEKELEGVGI--RLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             CSEEEEEEETTSHHH--HHHHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred             cCccccccccCccHH--HHHHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence            999999999997542  22333333332211  11255888999999964

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.58  E-value=1e-14  Score=106.57  Aligned_cols=116  Identities=13%  Similarity=-0.051  Sum_probs=68.8

Q ss_pred             EEEEEeeCCCccccccccc------cceecCcEEEEEEECCChhhHHHHHHH---HHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNVMKSFDNLNNW---REEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      +.+.||||||.........      ..+.. +++++++|+............   .......      .+.|+++|+||+
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~------~~~p~~iv~NK~  181 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR------LGATTIPALNKV  181 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH------HTSCEEEEECCG
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc------cCCCeEEEEecc
Confidence            4789999999765433211      23456 899999987643222222111   1111111      167899999999


Q ss_pred             CCCCCCcceecHHH------HH-H-----------------HHHHcC-CCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          128 DVDGGNSRVVSEKK------AK-A-----------------WCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       128 D~~~~~~~~~~~~~------~~-~-----------------~~~~~~-~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      |+..........+.      .. .                 +....+ ..+++++||+++.|+++++++|.+.+...
T Consensus       182 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          182 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            98753110000110      00 0                 112322 24899999999999999999999887653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.50  E-value=7.5e-14  Score=105.32  Aligned_cols=104  Identities=14%  Similarity=0.176  Sum_probs=63.0

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      ..+.|+||||.....   ......+|.+++++|+...+..+.+...   +.         ..+.++++||+|+...  ..
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~~  210 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--ER  210 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--HH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--hh
Confidence            578899999954321   1234679999999998643321111111   10         2356788899997542  11


Q ss_pred             ecHHHHHHHHHH---cC------CCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          137 VSEKKAKAWCAS---KG------NIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~---~~------~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ......+.+...   ..      ..+++.+|++++.|++++++.|.+.+.
T Consensus       211 ~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            122222223221   11      357899999999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.44  E-value=6.8e-13  Score=98.71  Aligned_cols=97  Identities=16%  Similarity=0.105  Sum_probs=75.9

Q ss_pred             ccccccccccceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceec-HHHHHH
Q 028654           67 QERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS-EKKAKA  144 (206)
Q Consensus        67 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~-~~~~~~  144 (206)
                      ++++....+.+++++|++++|+|++++. ++..+..|+..+..       .++|+++|+||+|+.+.  .... .++...
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~--~~v~~~~~~~~  136 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNE--EEKKELERWIS  136 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence            6667777888999999999999999886 78888888886654       17899999999999753  2112 344455


Q ss_pred             HHHHcCCCcEEEeeccCCCCHHHHHHHHH
Q 028654          145 WCASKGNIPYFETSAKEGFNVEAAFECIA  173 (206)
Q Consensus       145 ~~~~~~~~~~~~~s~~~~~~i~~l~~~i~  173 (206)
                      ++...+ .+++++||+++.|++++++.+.
T Consensus       137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence            555555 7899999999999999987653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.42  E-value=1.5e-13  Score=104.80  Aligned_cols=88  Identities=20%  Similarity=0.114  Sum_probs=52.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCcccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERF   70 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~   70 (206)
                      .+.++|+++|.+|+|||||+|+|.+..+.....+++|.......+.+.+.               ...+.+|||||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34679999999999999999999988765555566666555555555432               235899999996653


Q ss_pred             cc-------ccccceecCcEEEEEEECCCh
Q 028654           71 QS-------LGVAFYRGADCCVLVYDVNVM   93 (206)
Q Consensus        71 ~~-------~~~~~~~~~d~vi~v~d~~~~   93 (206)
                      ..       ....+++.+|++++|+|+++.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            33       345567899999999999754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.40  E-value=1.7e-13  Score=94.68  Aligned_cols=112  Identities=10%  Similarity=-0.037  Sum_probs=71.7

Q ss_pred             CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEeeCC-CCCCCCcceecHHH
Q 028654           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNKT-DVDGGNSRVVSEKK  141 (206)
Q Consensus        64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK~-D~~~~~~~~~~~~~  141 (206)
                      .+|+..++..|..|+.++|++|||+|.+|.+-.+ ...-+..+........ ..+.|++|++||. |+.++.    ...+
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am----s~~E  183 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM----PCFY  183 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC----CHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC----CHHH
Confidence            3478899999999999999999999999875443 2222233344444332 3588999999995 776543    2233


Q ss_pred             HHHHHH---HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhcC
Q 028654          142 AKAWCA---SKGNIPYFETSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       142 ~~~~~~---~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +.....   -...+.+..|||.+|+|+.+-++||.+.+..+.
T Consensus       184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~  225 (227)
T 3l82_B          184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR  225 (227)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred             HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence            322211   123578999999999999999999998775443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.39  E-value=8.4e-12  Score=95.47  Aligned_cols=86  Identities=20%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc-
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER-   69 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-   69 (206)
                      +..+++++|++|+|||||+|+|++... .....|+++.......+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457899999999999999999999776 5555666666665666655541               13678999999432 


Q ss_pred             ------cccccccceecCcEEEEEEECCC
Q 028654           70 ------FQSLGVAFYRGADCCVLVYDVNV   92 (206)
Q Consensus        70 ------~~~~~~~~~~~~d~vi~v~d~~~   92 (206)
                            +.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22233445678999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.24  E-value=1.4e-12  Score=94.48  Aligned_cols=111  Identities=10%  Similarity=-0.022  Sum_probs=73.5

Q ss_pred             CCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-CCCCcEEEEeeC-CCCCCCCcceecHHH
Q 028654           64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNK-TDVDGGNSRVVSEKK  141 (206)
Q Consensus        64 ~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pviiv~nK-~D~~~~~~~~~~~~~  141 (206)
                      .+|+...+..+..|+.++|++|||+|.+|.+-++...++ .++........ ..+.|++|++|| .|+.++..    ..+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams----~~E  268 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP----CFY  268 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC----HHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCCCC----HHH
Confidence            457899999999999999999999999997644321211 22212222111 237899999996 58875432    223


Q ss_pred             HHHHHH---HcCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          142 AKAWCA---SKGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       142 ~~~~~~---~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      +.+...   -...+.+..|||.+|+|+.+-++||.+.+..+
T Consensus       269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            322111   12347899999999999999999999987544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.19  E-value=2.7e-12  Score=98.03  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=80.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC------CCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-------cc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LG   74 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~   74 (206)
                      ..+|+++|.+|+|||||+|+|++.      .......++++...  ....+..   .+.++||||-.....       ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            357999999999999999999976      22233344443333  2333333   268899999432211       11


Q ss_pred             ccce---ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           75 VAFY---RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        75 ~~~~---~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ...+   +..+.+++++++.....+..+..    +    ......+.|+++++||.|....   .......+.+.+..+ 
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l----~~l~~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g-  304 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----L----DYIKGGRRSFVCYMANELTVHR---TKLEKADSLYANQLG-  304 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBT-
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----E----EEccCCCceEEEEecCCccccc---ccHHHHHHHHHHhcC-
Confidence            1112   56889999999842111111100    0    1111126799999999998753   333444445555555 


Q ss_pred             CcEEEeeccCCCCH
Q 028654          152 IPYFETSAKEGFNV  165 (206)
Q Consensus       152 ~~~~~~s~~~~~~i  165 (206)
                      ..+.+.++.+..++
T Consensus       305 ~~l~p~~~~~~~~~  318 (369)
T 3ec1_A          305 ELLSPPSKRYAAEF  318 (369)
T ss_dssp             TTBCSSCGGGTTTC
T ss_pred             CccCCCCchhhhhc
Confidence            55566665544443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.14  E-value=9.7e-11  Score=85.65  Aligned_cols=116  Identities=15%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------ccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQY---------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------   71 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------   71 (206)
                      .++++++|+.|+|||||+|.|++.......         ..+.............+....++++|++|-....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999875322110         0010001101101111122367899999821100       


Q ss_pred             ---cc------------------cccceecCcEEEEEEECC-ChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           72 ---SL------------------GVAFYRGADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        72 ---~~------------------~~~~~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                         ..                  ....+..+++.++++|.. .+-...+ ..++..+..        ..++++|++|+|.
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~--------~~~vI~Vi~K~D~  152 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK--------VVNIIPVIAKADT  152 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--------TSEEEEEETTGGG
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--------cCcEEEEEecccc
Confidence               00                  011234568899999965 3322222 222333321        3589999999998


Q ss_pred             CCC
Q 028654          130 DGG  132 (206)
Q Consensus       130 ~~~  132 (206)
                      ...
T Consensus       153 lt~  155 (270)
T 3sop_A          153 MTL  155 (270)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=89.36  Aligned_cols=143  Identities=14%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCc----ccccceeeEEEEEEeCCeEEEEEEeeCCCcccc-------------
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------------   70 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------   70 (206)
                      .++++|+|++|+|||||+|.|.+..+....    .+..............+....++++|++|-...             
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            457999999999999999999987543211    111111111111222223347889999983211             


Q ss_pred             -----cccccc---------ceec--CcE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           71 -----QSLGVA---------FYRG--ADC-CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        71 -----~~~~~~---------~~~~--~d~-vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                           ......         ....  .|+ ++++.|....-+..+     ..+.+.+.    .+.|+|+|+||+|.....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~----~~~~vI~Vi~KtD~Lt~~  192 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD----SKVNIIPIIAKADAISKS  192 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC----SCSEEEEEESCGGGSCHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh----hCCCEEEEEcchhccchH
Confidence                 000111         1112  234 455556554333222     12333332    277999999999987532


Q ss_pred             cceecHHHHHHHHHHcCCCcEEEeecc
Q 028654          134 SRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      ......+.+...... .+++++.+|..
T Consensus       193 E~~~l~~~I~~~L~~-~gi~I~~is~~  218 (427)
T 2qag_B          193 ELTKFKIKITSELVS-NGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred             HHHHHHHHHHHHHHH-cCCcEEecCCC
Confidence            211112222221112 34777777753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.06  E-value=1.3e-11  Score=94.15  Aligned_cols=135  Identities=14%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccc--------
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------   73 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------   73 (206)
                      .+|+++|.+|+|||||+|+|.+....       ....++++...  ..+.+..   .+.++||||-......        
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999875311       12233333222  2333333   2789999994322211        


Q ss_pred             cccc--eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           74 GVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        74 ~~~~--~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ....  .+..+.++++++.........+..    +    ......+.|+++++||+|..+   ........+.+.+..+ 
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~----d~l~~~~~~~~~v~nk~d~~~---~~~~~~~~~~~~~~~g-  303 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----F----DYVSGGRRAFTCHFSNRLTIH---RTKLEKADELYKNHAG-  303 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEE---EEEHHHHHHHHHHHBT-
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE----E----EEecCCCceEEEEecCccccc---cccHHHHHHHHHHHhC-
Confidence            1111  256788899998742111111100    0    111112679999999999875   3334444444555555 


Q ss_pred             CcEEEeecc
Q 028654          152 IPYFETSAK  160 (206)
Q Consensus       152 ~~~~~~s~~  160 (206)
                      ..+++.++.
T Consensus       304 ~~l~p~~~~  312 (368)
T 3h2y_A          304 DLLSPPTPE  312 (368)
T ss_dssp             TTBCSSCHH
T ss_pred             CccCCCchh
Confidence            444544443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.02  E-value=3e-09  Score=81.98  Aligned_cols=163  Identities=13%  Similarity=0.186  Sum_probs=86.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCccccc-ceee--EEEEEEeCCeEEEEEEeeCCCcccccccccc-----cee
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-GADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----FYR   79 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-----~~~   79 (206)
                      ...++++|++|+|||||+|.+.+......-.-.. +...  ...... ......+.++|++|-.........     .+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3478999999999999999999843221110000 0000  011111 111125788999994321111111     123


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC---------CCCcceecHHHHHHHHH---
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD---------GGNSRVVSEKKAKAWCA---  147 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~---------~~~~~~~~~~~~~~~~~---  147 (206)
                      ..+..++ ++...... +. ..+...+...       +.|+++|.||.|+.         +...+....+.+..+..   
T Consensus       148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l  217 (413)
T 1tq4_A          148 EYDFFII-ISATRFKK-ND-IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  217 (413)
T ss_dssp             GCSEEEE-EESSCCCH-HH-HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccH-HH-HHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            3455554 77652111 11 1112222221       67999999999964         11112223333444431   


Q ss_pred             -Hc--CCCcEEEeec--cCCCCHHHHHHHHHHHHhhcCC
Q 028654          148 -SK--GNIPYFETSA--KEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       148 -~~--~~~~~~~~s~--~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                       ..  ....++.+|+  .++.|++++.+.|.+.+++.++
T Consensus       218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~  256 (413)
T 1tq4_A          218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  256 (413)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence             21  2346788999  4556799999999998877654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.01  E-value=1.7e-10  Score=91.03  Aligned_cols=152  Identities=17%  Similarity=0.178  Sum_probs=82.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh------cCCCC----CCccccc-----------ceeeEEEEEE-------------e
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYV------NRKFS----NQYKATI-----------GADFLTKEVQ-------------F   52 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~   52 (206)
                      ....|+++|.+|+||||++++|.      +....    +.+.+..           +..+......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998      33221    1111110           0111110000             0


Q ss_pred             CCeEEEEEEeeCCCcccccc----ccccc--eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEee
Q 028654           53 EDRLFTLQIWDTAGQERFQS----LGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN  125 (206)
Q Consensus        53 ~~~~~~~~i~D~~G~~~~~~----~~~~~--~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~n  125 (206)
                      ....+.+.|+||||......    .....  +..+|.+++|+|+.......   .....+..        ..|+ .+|+|
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVlN  248 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIVT  248 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEEE
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEEe
Confidence            00235788999999543211    11111  12689999999998643211   11222221        1354 89999


Q ss_pred             CCCCCCCCcceecHHHHHHHHHHcC-----------------CCcEEEeeccCCCC-HHHHHHHHHHH
Q 028654          126 KTDVDGGNSRVVSEKKAKAWCASKG-----------------NIPYFETSAKEGFN-VEAAFECIAKN  175 (206)
Q Consensus       126 K~D~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~s~~~~~~-i~~l~~~i~~~  175 (206)
                      |.|.......  ..+    .....+                 ..+.+.+|+..|.| +.+|++++.+.
T Consensus       249 K~D~~~~~g~--~l~----~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKGGG--ALS----AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCCTH--HHH----HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccchHH--HHH----HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            9998743111  111    111211                 11234468888988 99999888775

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.00  E-value=7.7e-10  Score=84.42  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=71.6

Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHH--
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK--  143 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~--  143 (206)
                      .++.|.+....+.+.++++++|+|++++.     ..|...+.....     +.|+++|+||+|+.+..   ...+...  
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~---~~~~~~~~~  121 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKS---VKHDKVKHW  121 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTT---SCHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcc---cCHHHHHHH
Confidence            46778888888888999999999999753     445555555543     67999999999997542   2223333  


Q ss_pred             --HHHHHcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          144 --AWCASKGN--IPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       144 --~~~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                        .++...+.  ..++.+||+++.|++++++.|.+..
T Consensus       122 l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          122 MRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence              33444442  2789999999999999999997754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.88  E-value=2e-09  Score=82.25  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             CccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcc-eecHHHHHH
Q 028654           66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR-VVSEKKAKA  144 (206)
Q Consensus        66 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~-~~~~~~~~~  144 (206)
                      .++.|.+....++..++++++|+|++++.+     .|...+.....     +.|+++|+||+|+.+.... ....+.+..
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~  126 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR  126 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence            377888888888889999999999998663     33344444432     6799999999999764211 111222233


Q ss_pred             HHHHcCC--CcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          145 WCASKGN--IPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       145 ~~~~~~~--~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      ++...+.  ..++.+||+++.|++++++.|.+..
T Consensus       127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3444442  3789999999999999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=5.5e-09  Score=76.84  Aligned_cols=101  Identities=16%  Similarity=0.116  Sum_probs=67.6

Q ss_pred             EeeCCCcc-ccccccccceecCcEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654           61 IWDTAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV  137 (206)
Q Consensus        61 i~D~~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  137 (206)
                      +-..||+. .....+...++.+|+++.|+|+.++.+...  +..|+            .++|+++|+||+|+.+.    .
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~~----~   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKADA----A   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSCH----H
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCCH----H
Confidence            34678865 444566677899999999999998776542  33332            17799999999999752    1


Q ss_pred             cHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          138 SEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ..+....+....+ .+++.+|++++.|++++++.+.+.+..
T Consensus        67 ~~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           67 VTQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            1222223333333 689999999999999999988887653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.68  E-value=1.8e-08  Score=74.11  Aligned_cols=56  Identities=23%  Similarity=0.413  Sum_probs=34.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ..++++++|.+|+|||||+|+|.+.... ....+.+|....  .+....   .+.++||||.
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~  175 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  175 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence            4689999999999999999999987632 333333332222  222222   5789999994

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.67  E-value=7.6e-08  Score=74.60  Aligned_cols=91  Identities=19%  Similarity=0.076  Sum_probs=50.6

Q ss_pred             EEEEEeeCCCccccccc----cc--cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           57 FTLQIWDTAGQERFQSL----GV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~----~~--~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      +.+.|+||+|.......    ..  ..+..+|.+++|+|+........   ....+...       -.+..+|+||.|..
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~-------~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA-------TPIGSIIVTKLDGS  252 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS-------CTTEEEEEECCSSC
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh-------CCCeEEEEECCCCc
Confidence            57889999994322111    11  12235799999999986433222   22333222       12467999999986


Q ss_pred             CCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654          131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      ..      ......+....+ .|+.+++.  |++++
T Consensus       253 ~~------gG~~ls~~~~~g-~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          253 AK------GGGALSAVAATG-APIKFIGT--GEKID  279 (443)
T ss_dssp             SS------HHHHHHHHHTTC-CCEEEEEC--SSSTT
T ss_pred             cc------ccHHHHHHHHHC-CCEEEEEc--CCChH
Confidence            43      122333334444 77777775  44433

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.60  E-value=1.7e-08  Score=73.37  Aligned_cols=56  Identities=23%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      ++++++|.+|+|||||+|+|.+.... ....++++...  ..+...   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeC---CCEEEEECCCccc
Confidence            58999999999999999999987653 22222222222  122222   2578999999543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.50  E-value=8.6e-08  Score=76.98  Aligned_cols=64  Identities=23%  Similarity=0.212  Sum_probs=39.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccc---cceeeEEEEEEe-CCeEEEEEEeeCCCcc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT---IGADFLTKEVQF-EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~i~D~~G~~   68 (206)
                      ..+..+|+|+|.+|+|||||+|+|++.........+   .+.....+...+ ......+.++||||..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~  102 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG  102 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence            345688999999999999999999987632111111   111121111111 1223468899999954

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.43  E-value=9.1e-08  Score=74.11  Aligned_cols=90  Identities=18%  Similarity=0.063  Sum_probs=50.1

Q ss_pred             EEEEEeeCCCccc--ccc----cccc--ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           57 FTLQIWDTAGQER--FQS----LGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        57 ~~~~i~D~~G~~~--~~~----~~~~--~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      +.+.++||||...  ...    ....  .....+.+++|+|+.......   .....+....       .+..+|+||.|
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~-------~~~gVIlTKlD  249 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS-------PIGSVIITKMD  249 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC-------SSEEEEEECGG
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc-------CCcEEEEeccc
Confidence            5678999999533  111    1111  112468999999998643222   2223333222       25789999999


Q ss_pred             CCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654          129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      ....      .....+.....+ .|+..++.  |+++
T Consensus       250 ~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          250 GTAK------GGGALSAVVATG-ATIKFIGT--GEKI  277 (433)
T ss_dssp             GCSC------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred             cccc------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence            7532      222333334444 77777775  4443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.37  E-value=5.7e-07  Score=73.02  Aligned_cols=24  Identities=21%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..++|+|+.|||||||++.+.+..
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            358999999999999999999864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.37  E-value=1.3e-06  Score=67.99  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|+++|++|+||||+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999999875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.30  E-value=1.6e-06  Score=64.12  Aligned_cols=91  Identities=19%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             EEEEEeeCCCccc--ccc-ccc-----cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCC
Q 028654           57 FTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKT  127 (206)
Q Consensus        57 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~  127 (206)
                      +.+.++||||...  ... ...     ..+..+|.+++|+|+....   ........+..        ..+ ..+|+||.
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk~  249 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITKM  249 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEECG
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeCC
Confidence            5788999999655  211 111     1234689999999987432   22222222221        234 67899999


Q ss_pred             CCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654          128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      |....      ......+....+ .|+..++  .|+++++
T Consensus       250 D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          250 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE  280 (297)
T ss_dssp             GGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             CCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence            97532      223334445554 7777766  4555544

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.27  E-value=3.1e-07  Score=66.76  Aligned_cols=93  Identities=15%  Similarity=0.003  Sum_probs=59.1

Q ss_pred             CCCccc-cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHH
Q 028654           64 TAGQER-FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA  142 (206)
Q Consensus        64 ~~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~  142 (206)
                      .||+.. ........++.+|+++.|+|+.++.+....     .+. ..      ++|.++|+||+|+.+.    ...+..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~----~~~~~~   67 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE----KTTKKW   67 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH----HHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH----HHHHHH
Confidence            467543 233556677899999999999987654321     011 11      6799999999999753    112222


Q ss_pred             HHHHHHcCCCcEEEeeccCCCCHHHHHHHHHH
Q 028654          143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAK  174 (206)
Q Consensus       143 ~~~~~~~~~~~~~~~s~~~~~~i~~l~~~i~~  174 (206)
                      ..+....+ .++ .+|+.++.|++++++.+.+
T Consensus        68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence            33333334 667 9999999999998877654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.26  E-value=1.2e-06  Score=64.95  Aligned_cols=89  Identities=13%  Similarity=0.010  Sum_probs=57.1

Q ss_pred             ccccceecCcEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCC
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSF-DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (206)
                      ..+..++++|.+++|+|+.++... ..+.+++......       ++|.++|+||+|+.+........+....+....+ 
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~-------~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-  150 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-  150 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC-------CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-
Confidence            344568899999999999875543 3344444333211       7789999999999864110011233334444445 


Q ss_pred             CcEEEeeccCCCCHHHHH
Q 028654          152 IPYFETSAKEGFNVEAAF  169 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~  169 (206)
                      .+++.+|+.++.|+++|+
T Consensus       151 ~~v~~~sa~~~~g~~~L~  168 (307)
T 1t9h_A          151 YDVYLTSSKDQDSLADII  168 (307)
T ss_dssp             CCEEECCHHHHTTCTTTG
T ss_pred             CeEEEEecCCCCCHHHHH
Confidence            689999999888876544

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.19  E-value=1e-05  Score=63.00  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..-|.|+|++++|||||+|.|++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhhh
Confidence            34566889999999999999999863

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.09  E-value=7.9e-06  Score=61.25  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..--++++|+.||||||+++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.08  E-value=2.5e-05  Score=59.09  Aligned_cols=86  Identities=10%  Similarity=0.051  Sum_probs=53.9

Q ss_pred             cceecCcEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcE
Q 028654           76 AFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY  154 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (206)
                      ..+.++|.+++|... ++.. ...+.+++......       ++|+++|+||+|+.+... ....+.........+ +++
T Consensus       126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~-~~~~~~~~~~y~~~G-~~v  195 (358)
T 2rcn_A          126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEG-MDFVNEQMDIYRNIG-YRV  195 (358)
T ss_dssp             EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHH-HHHHHHHHHHHHTTT-CCE
T ss_pred             HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchh-HHHHHHHHHHHHhCC-CcE
Confidence            346889999988665 4443 33445554433222       678899999999986310 000112222223344 789


Q ss_pred             EEeeccCCCCHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFEC  171 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~  171 (206)
                      +.+|+.++.|++++...
T Consensus       196 ~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          196 LMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             EECBTTTTBTHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHh
Confidence            99999999999987654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.83  E-value=7.7e-07  Score=70.16  Aligned_cols=101  Identities=10%  Similarity=-0.022  Sum_probs=54.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc--ccccc--------c
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~   75 (206)
                      ..+..|+++|.+||||||+.+.|....... ..++.............+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999987542110 011110000000000011112335788888632  22222        3


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHH
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLI  108 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  108 (206)
                      .++...++.++|+|.++. .......|...+..
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            445557888999999986 44455566555543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.70  E-value=2.3e-05  Score=53.53  Aligned_cols=22  Identities=55%  Similarity=0.949  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +++++|++|||||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.67  E-value=2.9e-05  Score=52.66  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=22.6

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      |...++....|+++|++||||||+++.|.+
T Consensus         1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             --CCCTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCccCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            444444455789999999999999998865

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.65  E-value=2.6e-05  Score=53.30  Aligned_cols=22  Identities=27%  Similarity=0.732  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.65  E-value=0.00031  Score=54.68  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=19.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHh
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .+..|+++|.+|+||||++..|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35678899999999999998876

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.61  E-value=3.2e-05  Score=53.72  Aligned_cols=22  Identities=32%  Similarity=0.674  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6799999999999999998763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.52  E-value=5e-05  Score=52.79  Aligned_cols=22  Identities=45%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5789999999999999999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.51  E-value=5.9e-05  Score=51.84  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++++|++|||||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35889999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.49  E-value=5.5e-05  Score=52.87  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||++.+.+..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            46899999999999999988753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.48  E-value=5.4e-05  Score=51.24  Aligned_cols=20  Identities=30%  Similarity=0.654  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028654           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            46899999999999999754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.48  E-value=6.2e-05  Score=53.13  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||++.+.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            57899999999999999998753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.47  E-value=6.2e-05  Score=53.08  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|||||||++.+.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999998743

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.46  E-value=6.8e-05  Score=51.90  Aligned_cols=23  Identities=26%  Similarity=0.678  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --|+++|++|+|||||++.|.+.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35789999999999999999864

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.45  E-value=6.8e-05  Score=52.42  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|+|+|++|||||||++.+.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.44  E-value=8.9e-05  Score=50.33  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.41  E-value=0.002  Score=50.17  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHh
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      .+..-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            455667799999999999999664

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.41  E-value=9.1e-05  Score=51.78  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|+.|||||||++.+.+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998763

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.41  E-value=9e-05  Score=51.83  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-|+++|++|||||||++.|.+..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            357899999999999999998753

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.40  E-value=8.1e-05  Score=53.12  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999987753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.39  E-value=0.00011  Score=51.25  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +....|++.|.+||||||+.+.|..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999999865

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.39  E-value=9.7e-05  Score=50.70  Aligned_cols=21  Identities=33%  Similarity=0.713  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||++.|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.36  E-value=0.00013  Score=50.53  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=23.0

Q ss_pred             CccccceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         1 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      |-+..+....|+|.|++||||||+.+.|...
T Consensus         1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence            3344455678999999999999999998765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.36  E-value=0.00011  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+++|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.35  E-value=0.00011  Score=49.06  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            57899999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.35  E-value=0.0001  Score=52.21  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999987753

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.34  E-value=0.00012  Score=51.02  Aligned_cols=23  Identities=30%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-|+++|++|||||||++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.33  E-value=0.00012  Score=50.97  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..|+++|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            468999999999999999998754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.32  E-value=0.00013  Score=52.27  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998753

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.32  E-value=0.00015  Score=49.23  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.31  E-value=0.00015  Score=52.04  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 028654            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      ...|+++|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999998

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.31  E-value=0.00013  Score=50.08  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|||||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.30  E-value=0.00014  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+++|++|||||||++.|.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.30  E-value=0.00013  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.29  E-value=0.00013  Score=53.25  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46899999999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.29  E-value=0.00015  Score=48.92  Aligned_cols=19  Identities=26%  Similarity=0.501  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 028654           10 KVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l   28 (206)
                      -|++.|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5889999999999999999

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.29  E-value=0.00013  Score=52.87  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.28  E-value=0.00016  Score=54.76  Aligned_cols=23  Identities=43%  Similarity=0.664  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||+|.|.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            57899999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.28  E-value=0.00014  Score=52.76  Aligned_cols=22  Identities=18%  Similarity=0.543  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            5789999999999999998763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.28  E-value=0.00014  Score=52.01  Aligned_cols=22  Identities=32%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999775

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.28  E-value=0.00014  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998753

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.28  E-value=0.00015  Score=48.87  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|++.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.27  E-value=0.00018  Score=49.40  Aligned_cols=24  Identities=33%  Similarity=0.506  Sum_probs=20.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++..|++.|.+||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.26  E-value=0.00015  Score=49.88  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5789999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.26  E-value=0.00015  Score=52.52  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.25  E-value=0.00018  Score=51.66  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00016  Score=50.15  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|++||||||+++.|...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.24  E-value=0.00017  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            56899999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.24  E-value=0.00016  Score=52.44  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            46899999999999999988753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.24  E-value=0.00018  Score=51.77  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987753

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.23  E-value=0.0002  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.23  E-value=0.00017  Score=51.62  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.22  E-value=0.00017  Score=52.06  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.22  E-value=0.00018  Score=51.78  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999885

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.22  E-value=0.00018  Score=53.22  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            6789999999999999998753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.22  E-value=0.00024  Score=49.43  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +.|+++|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.22  E-value=0.00018  Score=51.77  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.21  E-value=0.0002  Score=50.50  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.21  E-value=0.00013  Score=51.00  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.20  E-value=0.0002  Score=52.10  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999885

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.19  E-value=0.00023  Score=49.31  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3789999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.19  E-value=0.00021  Score=51.77  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.19  E-value=0.00019  Score=52.30  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.18  E-value=0.00021  Score=49.59  Aligned_cols=24  Identities=25%  Similarity=0.235  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|++||||||+++.|.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999988764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.18  E-value=0.0003  Score=48.00  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.18  E-value=0.00023  Score=49.91  Aligned_cols=21  Identities=24%  Similarity=0.589  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|+|.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999854

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.18  E-value=0.00021  Score=53.21  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...-|+|+|++|||||||++.+.+.
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhh
Confidence            4567899999999999999998764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.18  E-value=0.00023  Score=52.13  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.17  E-value=0.00021  Score=51.55  Aligned_cols=23  Identities=26%  Similarity=0.603  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.17  E-value=0.00019  Score=48.88  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.17  E-value=0.00023  Score=49.37  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999876

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.16  E-value=0.00028  Score=47.88  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-++++|++|||||||++.+...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45789999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.16  E-value=0.00025  Score=49.75  Aligned_cols=21  Identities=24%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.15  E-value=0.00022  Score=51.84  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999988753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.15  E-value=0.00028  Score=48.42  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.15  E-value=0.0003  Score=49.02  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++||||||+.+.|...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457899999999999999998753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.15  E-value=0.00032  Score=48.04  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|.+||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.14  E-value=0.00027  Score=48.21  Aligned_cols=23  Identities=35%  Similarity=0.533  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.13  E-value=0.0046  Score=43.08  Aligned_cols=66  Identities=20%  Similarity=0.073  Sum_probs=44.7

Q ss_pred             EEEEEeeCCCc-cccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCC
Q 028654           57 FTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG  131 (206)
Q Consensus        57 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~  131 (206)
                      +.+.++|+|+. ..  ......+..+|.+|+++..+ ..+...+..++..+....      +.++.+|+|+.|...
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPYP  134 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCTT
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCcc
Confidence            57889999986 42  23445667899999999876 344455555555554421      346889999998653

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.13  E-value=0.00015  Score=51.47  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=14.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-cC
Q 028654           10 KVIILGDSGVGKTSLMNQYV-NR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~-~~   31 (206)
                      -++++|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998 54

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.12  E-value=0.00031  Score=48.02  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|++||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.12  E-value=0.00023  Score=52.76  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||+|.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            46899999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.12  E-value=0.0003  Score=48.65  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|++.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5899999999999999998763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.12  E-value=0.00033  Score=50.20  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+..|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.11  E-value=0.00027  Score=48.43  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.11  E-value=0.00033  Score=48.51  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=21.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+..|++.|++||||||+.+.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.11  E-value=0.0003  Score=51.05  Aligned_cols=23  Identities=48%  Similarity=0.668  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.10  E-value=0.00017  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.08  E-value=0.00029  Score=53.43  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999998763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.08  E-value=0.00028  Score=49.81  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.08  E-value=8.5e-05  Score=55.06  Aligned_cols=23  Identities=39%  Similarity=0.614  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            67899999999999999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.07  E-value=0.00031  Score=52.09  Aligned_cols=20  Identities=40%  Similarity=0.718  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028654           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      .++++|++|+|||||+|.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            56899999999999999998

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.07  E-value=0.00034  Score=49.50  Aligned_cols=23  Identities=30%  Similarity=0.664  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.07  E-value=0.00039  Score=48.39  Aligned_cols=25  Identities=24%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|+++|++||||||+++.|.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3457899999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.07  E-value=0.00013  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|++|||||||++.+.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999998764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.06  E-value=0.00039  Score=51.84  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .++-|+++|++|||||||++.|.+
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999988754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.05  E-value=0.00031  Score=53.17  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            36899999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.05  E-value=0.00038  Score=48.60  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|+++|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988754

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.04  E-value=0.00039  Score=48.93  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.03  E-value=0.00042  Score=49.67  Aligned_cols=23  Identities=13%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|+.|||||||++.|.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999876

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.03  E-value=0.00039  Score=51.11  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.-|++.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.03  E-value=0.00021  Score=53.01  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6789999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.02  E-value=0.00038  Score=48.80  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.02  E-value=0.00038  Score=47.11  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.02  E-value=0.00047  Score=47.75  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999999775

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.02  E-value=0.00034  Score=49.30  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.01  E-value=0.00054  Score=46.83  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|+++|.+||||||+++.|...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567899999999999999988653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.01  E-value=0.00038  Score=52.68  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46799999999999999998754

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.01  E-value=0.00029  Score=53.61  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999998875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.01  E-value=0.00034  Score=51.47  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999987753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.01  E-value=0.00043  Score=48.62  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.01  E-value=0.00039  Score=52.71  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46899999999999999998754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.01  E-value=0.00048  Score=50.70  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=21.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999999999988754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.01  E-value=0.00035  Score=47.61  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.00  E-value=0.00025  Score=46.79  Aligned_cols=23  Identities=26%  Similarity=0.644  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|+|||||++.+.+..
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999988643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.00  E-value=0.00039  Score=50.80  Aligned_cols=22  Identities=36%  Similarity=0.560  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.99  E-value=0.0004  Score=52.62  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46899999999999999998753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.99  E-value=0.00041  Score=52.91  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            36899999999999999998754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.99  E-value=0.00038  Score=52.28  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|||||||++.+.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998753

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.99  E-value=0.00042  Score=52.59  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46899999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.98  E-value=0.00038  Score=52.91  Aligned_cols=22  Identities=32%  Similarity=0.730  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6889999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.97  E-value=0.00047  Score=46.85  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999999874

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.95  E-value=0.00044  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++|+.|||||||++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34688999999999999999874

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.95  E-value=0.00046  Score=52.55  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.95  E-value=0.00045  Score=52.64  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            46899999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.95  E-value=0.00057  Score=48.06  Aligned_cols=21  Identities=29%  Similarity=0.648  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++|+|||||+|....|...
T Consensus        32 I~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999988754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.95  E-value=0.00046  Score=49.76  Aligned_cols=21  Identities=29%  Similarity=0.351  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|+|+|++|||||||...|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.94  E-value=0.00045  Score=47.60  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++||||||+.+.|...
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.94  E-value=0.00043  Score=52.83  Aligned_cols=22  Identities=18%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998763

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.93  E-value=0.0006  Score=45.92  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..++++|++|||||||+.++...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35789999999999999998764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.93  E-value=0.00045  Score=51.34  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+|+|+.|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.93  E-value=0.00058  Score=47.37  Aligned_cols=23  Identities=43%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..-|+++|++|||||||++.|.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.92  E-value=0.00048  Score=53.34  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|+|++|||||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.92  E-value=0.00062  Score=45.57  Aligned_cols=21  Identities=14%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.91  E-value=0.00051  Score=49.40  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.91  E-value=0.00061  Score=48.40  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|.+||||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999988653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.90  E-value=0.00058  Score=47.65  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.90  E-value=0.00064  Score=48.98  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 028654            9 LKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~   29 (206)
                      ..|+++|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999997

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.90  E-value=0.00054  Score=50.73  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      --++++|+.||||||+++.+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4678999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.89  E-value=0.00063  Score=48.01  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.87  E-value=0.00044  Score=49.83  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..|+++|++||||||+.+.|...
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567899999999999999998653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.87  E-value=0.00079  Score=46.62  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...|++.|++||||||+.+.|..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998874

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.86  E-value=0.00055  Score=54.43  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++|+|++|||||||++.+.+.-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999998743

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.85  E-value=0.00064  Score=45.74  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.84  E-value=0.0006  Score=52.26  Aligned_cols=22  Identities=32%  Similarity=0.714  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4689999999999999998874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.84  E-value=0.00074  Score=48.00  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .++.|++.|++||||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.84  E-value=0.00085  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.83  E-value=0.00038  Score=52.54  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            46899999999999999998753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.83  E-value=0.00079  Score=45.77  Aligned_cols=23  Identities=30%  Similarity=0.690  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.82  E-value=0.00078  Score=46.15  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.82  E-value=0.00052  Score=48.69  Aligned_cols=24  Identities=33%  Similarity=0.606  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|++.|+.|||||||++.|.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999998765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.81  E-value=0.00082  Score=48.36  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+.|+|.|++||||||+.+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.80  E-value=0.00048  Score=46.81  Aligned_cols=24  Identities=33%  Similarity=0.332  Sum_probs=16.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            356899999999999999998643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.79  E-value=0.00093  Score=48.35  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.79  E-value=0.00025  Score=49.57  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999998653

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.77  E-value=0.00078  Score=49.19  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.76  E-value=0.00075  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35889999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.76  E-value=0.0011  Score=45.04  Aligned_cols=24  Identities=29%  Similarity=0.249  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|.+||||||+.+.|...
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.74  E-value=0.001  Score=49.12  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.72  E-value=0.00038  Score=52.71  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46899999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.72  E-value=0.00088  Score=47.24  Aligned_cols=22  Identities=23%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|+|||||+..+...
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999998743

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.72  E-value=0.0011  Score=44.47  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.71  E-value=0.0009  Score=50.71  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .--++++|+.||||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34688999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.71  E-value=0.00097  Score=45.30  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      .+|+|+.|+|||||+.++..
T Consensus        29 ~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.0008  Score=52.77  Aligned_cols=22  Identities=41%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+|+.|||||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.67  E-value=0.00097  Score=47.96  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.|+++|++||||||+.+.|.+
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.67  E-value=0.0012  Score=47.54  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..+++.|++|+|||||++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            446899999999999999998764

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.65  E-value=0.001  Score=52.41  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      --++|+|+.|||||||++.|.+
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHH
Confidence            4688999999999999999865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.63  E-value=0.0013  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-|+|+|++|||||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46889999999999999988753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.61  E-value=0.00093  Score=45.23  Aligned_cols=24  Identities=38%  Similarity=0.613  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|+..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346799999999999999988654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.61  E-value=0.0011  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999988764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.60  E-value=0.00085  Score=50.09  Aligned_cols=23  Identities=30%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++|+|+.|||||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            45788999999999999999653

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.60  E-value=0.0012  Score=49.84  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +++++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.60  E-value=0.0014  Score=48.05  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.|+|.|.+||||||+.+.|..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56799999999999999998863

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.59  E-value=0.0016  Score=45.51  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|.+||||||+++.|...
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999988653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.58  E-value=0.0014  Score=45.28  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999988764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.58  E-value=0.0014  Score=46.40  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|+..+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.57  E-value=0.0017  Score=46.02  Aligned_cols=24  Identities=29%  Similarity=0.461  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|++.|++||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            456889999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.57  E-value=0.0016  Score=44.83  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|.+||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            467899999999999999988754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.55  E-value=0.0014  Score=45.89  Aligned_cols=21  Identities=29%  Similarity=0.180  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999987

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.55  E-value=0.0011  Score=45.98  Aligned_cols=21  Identities=14%  Similarity=0.387  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .+++.|+||+||||++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.55  E-value=0.0015  Score=43.09  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028654           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+++|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999999975

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.54  E-value=0.0018  Score=48.29  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.51  E-value=0.0066  Score=45.46  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            357899999999999999998654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.51  E-value=0.0015  Score=46.37  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4689999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.50  E-value=0.0016  Score=52.16  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.50  E-value=0.0014  Score=51.50  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            468999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.48  E-value=0.0015  Score=49.84  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.46  E-value=0.0016  Score=50.71  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            67899999999999999998764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.44  E-value=0.0018  Score=47.66  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..+++.|++|+|||+|++++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456778899999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.43  E-value=0.0016  Score=52.66  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6789999999999999998775

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.43  E-value=0.002  Score=44.45  Aligned_cols=24  Identities=50%  Similarity=0.711  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..|+++|++|+|||||...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.42  E-value=0.0017  Score=52.02  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46899999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.41  E-value=0.0019  Score=52.31  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            67899999999999999988753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.39  E-value=0.0022  Score=41.89  Aligned_cols=26  Identities=15%  Similarity=0.176  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ....|++.|++|+|||+++..+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34578999999999999999987653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0019  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999998754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.37  E-value=0.0024  Score=45.97  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998763

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.36  E-value=0.0022  Score=47.18  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|++.+.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457899999999999999998764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.36  E-value=0.0023  Score=44.31  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|++.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.34  E-value=0.0029  Score=46.73  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999988764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.34  E-value=0.0029  Score=46.90  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-|+|+|++|||||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35789999999999999999765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.33  E-value=0.0023  Score=46.71  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....+++.|++|+|||+|++.+...
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457899999999999999999764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.32  E-value=0.0026  Score=45.19  Aligned_cols=24  Identities=17%  Similarity=0.325  Sum_probs=21.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ....|+++|++||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998875

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.31  E-value=0.0023  Score=45.07  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .+++.|++|+|||||+..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.29  E-value=0.0022  Score=46.83  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999998875

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.29  E-value=0.0024  Score=44.40  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++.|++|+|||+|+..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.28  E-value=0.0025  Score=47.10  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|++.+.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.28  E-value=0.0029  Score=44.78  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+++++|++||||||+...|..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            46889999999999999998865

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.28  E-value=0.0025  Score=48.52  Aligned_cols=19  Identities=32%  Similarity=0.615  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028654           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+++|+.|+|||||+++++
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4589999999999999976

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.28  E-value=0.0024  Score=44.70  Aligned_cols=23  Identities=13%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +..|++.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.27  E-value=0.0024  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999998754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.27  E-value=0.0033  Score=45.65  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=22.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .....+++.|++|+|||+|+..+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568899999999999999998764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.26  E-value=0.0023  Score=51.24  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.26  E-value=0.0024  Score=49.45  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-|+++|++||||||+.+.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346788999999999999998754

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.24  E-value=0.0013  Score=48.44  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      +-|+|.|++||||||+.+.|..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998765

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0029  Score=49.12  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..|++.||||+|||+|++++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            4568999999999999999999764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.23  E-value=0.0019  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.586  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            67899999999999999987643

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.22  E-value=0.0025  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Q 028654            8 LLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~   29 (206)
                      .-.++++|+.|+||||++..|.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3468899999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0031  Score=48.90  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..|++.||||+|||+|++++.+.
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3557999999999999999999764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.21  E-value=0.0032  Score=46.49  Aligned_cols=23  Identities=26%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            44799999999999999987654

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.20  E-value=0.003  Score=50.62  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.20  E-value=0.0026  Score=47.41  Aligned_cols=23  Identities=35%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||||++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.19  E-value=0.0034  Score=42.66  Aligned_cols=21  Identities=14%  Similarity=0.412  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++|+|.++||||+|...+...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.18  E-value=0.0039  Score=46.10  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-|+|+|++|||||||...|...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            345788999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.18  E-value=0.0016  Score=52.61  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6789999999999999987764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.17  E-value=0.0041  Score=46.58  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-|+|+|++|||||||...|....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHC
Confidence            358899999999999999988653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.0034  Score=48.82  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++..|++.||||+|||+|++++.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999999764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.15  E-value=0.0031  Score=46.76  Aligned_cols=23  Identities=22%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .--|+++|++|+||||++..+.+
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34678999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.15  E-value=0.0032  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998854

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.14  E-value=0.0023  Score=46.30  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....|++.|..||||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3567899999999999999988654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.13  E-value=0.0022  Score=52.01  Aligned_cols=22  Identities=41%  Similarity=0.650  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.0033  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.671  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|+.|+|||||++.+.+..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.06  E-value=0.004  Score=46.52  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++|+|||+|++++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            457899999999999999999764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.05  E-value=0.0037  Score=44.40  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999777653

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.05  E-value=0.0033  Score=47.50  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -+.++|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999998865

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.05  E-value=0.0048  Score=46.02  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|++++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.04  E-value=0.0034  Score=47.66  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.+++.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346889999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0037  Score=47.97  Aligned_cols=25  Identities=32%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++..|++.||||+|||+|++++.+.
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHh
Confidence            4568999999999999999999764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.01  E-value=0.003  Score=47.60  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.|++|+||||+++.+.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988763

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.01  E-value=0.0047  Score=46.58  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+|+++|++|+||||+...|.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999987654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.00  E-value=0.0022  Score=41.79  Aligned_cols=24  Identities=13%  Similarity=0.256  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++|+|||++++.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            356899999999999999887654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.96  E-value=0.0042  Score=45.74  Aligned_cols=24  Identities=25%  Similarity=0.558  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.95  E-value=0.004  Score=46.76  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.95  E-value=0.0045  Score=47.11  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++.|++|+|||||++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.94  E-value=0.0052  Score=43.77  Aligned_cols=23  Identities=22%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..|++.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999998764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.91  E-value=0.005  Score=45.69  Aligned_cols=24  Identities=25%  Similarity=0.499  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999988753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.87  E-value=0.0063  Score=42.62  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +...-|++.|++||||||+++.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            3455688999999999999999864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.87  E-value=0.0042  Score=43.92  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=17.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|++.|++||||||+++.|...
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~   48 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDR   48 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999998653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.86  E-value=0.0057  Score=42.46  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028654           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .+|+|+.|+||||++.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            3688999999999999864

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.84  E-value=0.0065  Score=40.91  Aligned_cols=24  Identities=29%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .-+++.|++|+||||+.-.|..+.
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            468899999999999999988754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.79  E-value=0.0061  Score=52.05  Aligned_cols=24  Identities=33%  Similarity=0.528  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      .++++|+.|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999986543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.0062  Score=47.08  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..|++.||||+|||+|++++.+.
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHHH
Confidence            4568999999999999999999764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.76  E-value=0.0032  Score=50.52  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|+++|++|||||||++.|.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            356899999999999999998765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.75  E-value=0.0022  Score=46.36  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            35789999999999999998763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.75  E-value=0.0066  Score=43.21  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=20.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +...-|++.|.+||||||+++.|...
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~   50 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVET   50 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34456889999999999999998653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0052  Score=47.97  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=22.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..|++.|+||+|||+|++++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            4668999999999999999999764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.73  E-value=0.0055  Score=48.54  Aligned_cols=23  Identities=35%  Similarity=0.569  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..++++|++|+|||+|++.+.+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.73  E-value=0.0058  Score=45.91  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++.|++|+||||+++.+.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.72  E-value=0.006  Score=46.21  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|++.|++|+|||+|++++...
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.72  E-value=0.0031  Score=55.83  Aligned_cols=21  Identities=24%  Similarity=0.526  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +|+++|++|||||||++.|.+
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.72  E-value=0.0056  Score=47.79  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+++.|++|+|||||++.+.+.
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~  153 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.71  E-value=0.0059  Score=46.99  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028654           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      -+.|+|++|+|||||+..+.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            46799999999999999775

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.69  E-value=0.0049  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-.+++.|++|+|||||++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-48
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-47
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-45
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-44
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-43
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-42
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-42
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-42
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	8e-41
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-39
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-39
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-39
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-39
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-39
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-37
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-35
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-35
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-35
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-35
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	7e-35
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-35
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-34
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-34
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-33
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-33
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-33
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-32
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-31
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-31
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-31
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-30
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	8e-29
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-28
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-28
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-27
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-27
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-27
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-26
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-26
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-26
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-25
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-25
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-24
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-23
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-22
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-22
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	6e-22
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	7e-22
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-19
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-19
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-19
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	9e-19
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	9e-18
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	2e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-14
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	3e-11
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	3e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	6e-11
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	1e-10
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-09
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	1e-09
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	9e-09
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	3e-08
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	7e-08
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-07
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	2e-04
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.001
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.002
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	0.003

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  153 bits (388), Expect = 2e-48
 Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 8/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           ++K++++GDSGVGK+ L+ ++V  KF+  +  TIG DF  K V    +   LQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   ++F N+  W +           +    +++GNK+
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEH----ANDEAQLLLVGNKS 117

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
           D+    +RVV+  + +A  A +  IP+ E+SAK   NV   F  +AK   + 
Sbjct: 118 DM---ETRVVTADQGEAL-AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 165

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  151 bits (383), Expect = 2e-47
 Identities = 63/173 (36%), Positives = 96/173 (55%), Gaps = 7/173 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++GDSGVGKT ++ ++    F++ + +TIG DF  + ++ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  A+YRGA   +LVYD+   KSFDN+ NW              +   ++LGNK 
Sbjct: 66  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----ASADVEKMILGNKC 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           DV+          +     A    I + ETSAK   NVE AF  +A++     
Sbjct: 122 DVNDKRQVSKERGE---KLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 4e-45
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 7/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G++GVGKT L+ ++    F     ATIG DF+ K V+       LQIWDTAGQ
Sbjct: 5   LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YR A+  +L YD+   +SF  L  W  E    A          V++GNK 
Sbjct: 65  ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNK- 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                  R    ++     +   ++ Y ETSAKE  NVE  F  +A   +  
Sbjct: 120 --IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  144 bits (364), Expect = 2e-44
 Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K++++G+SGVGK+ L+ ++ +  ++N Y +TIG DF  K V+ + +   LQIWDTAGQ
Sbjct: 6   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 65

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRG+   ++VYDV   +SF+ +  W +E               +++GNK 
Sbjct: 66  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID----RYATSTVLKLLVGNK- 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                  + V E       A    +P+ ETSA +  NVE AF  +A+   ++  Q+ 
Sbjct: 121 --CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQN 175

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (353), Expect = 5e-43
 Identities = 62/177 (35%), Positives = 105/177 (59%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KV+++GDSGVGK++L++++   +F+ + K+TIG +F T+ +Q + +    QIWDTAGQ
Sbjct: 4   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++ +  A+YRGA   +LVYD+    +++N+  W +E    A      N   +++GNK+
Sbjct: 64  ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           D+    +    E +A A      N+ + ETSA +  NVE AF+ I     +   Q++
Sbjct: 120 DLRHLRAVPTDEARAFAEK---NNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (350), Expect = 2e-42
 Identities = 138/186 (74%), Positives = 155/186 (83%), Gaps = 5/186 (2%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV  +DRL T+QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERFQSLGVAFYRGADCCVLV+DV    +F  L++WR+EFLIQASP DPENFPFVVLGNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDY- 186
           D+    +R V+ K+A+AWC SK NIPYFETSAKE  NVE AF+ IA+NALK E + E Y 
Sbjct: 122 DL---ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYN 178

Query: 187 -LPDTI 191
             P+ I
Sbjct: 179 EFPEPI 184

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  138 bits (349), Expect = 2e-42
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K++I+G+S VGKTS + +Y +  F+  + +T+G DF  K +   D+   LQIWDTAGQ
Sbjct: 5   MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ER++++  A+YRGA   +L+YD+   +SF+ + +W  +    +      N   +++GNK 
Sbjct: 65  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKC 120

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++          +     A      +FE SAK+  NV+  FE +     +
Sbjct: 121 DMEDERVVSSERGR---QLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 4e-42
 Identities = 92/174 (52%), Positives = 123/174 (70%), Gaps = 3/174 (1%)

Query: 5   RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
           +  L KVI+LGD GVGK+SLMN+YV  KF  Q   TIG +FL K+++ +    T+QIWDT
Sbjct: 3   KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 62

Query: 65  AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
           AGQERF+SL   FYRG+DCC+L + V+  +SF NL+NW++EF+  A   +PE+FPFV+LG
Sbjct: 63  AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122

Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           NK D+   + R VS ++A+AWC   G+ PYFETSAK+  NV AAFE   +  L 
Sbjct: 123 NKIDI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (338), Expect = 8e-41
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
             KV+++GDSGVGKT L+ ++ +  F +  + +T+G DF  K +  +     LQ+WDTAG
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERF+S+  A+YR A   +L+YDV    SFDN+  W  E    A      +   ++LGNK
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNK 121

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
            D    + RVV  +  +   A +  +P+ ETSAK G NV+ AF  IAK   +
Sbjct: 122 VDSA--HERVVKREDGEKL-AKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-39
 Identities = 73/185 (39%), Positives = 107/185 (57%), Gaps = 16/185 (8%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL----------F 57
           L+K++ LGDSGVGKT+ + +Y + KF+ ++  T+G DF  K V +  +            
Sbjct: 5   LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 64

Query: 58  TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
            LQ+WDTAGQERF+SL  AF+R A   +L++D+   +SF N+ NW  +       +  EN
Sbjct: 65  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCEN 121

Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
              V++GNK D+   + R V+E++A+   A K  IPYFETSA  G NVE A E +    +
Sbjct: 122 PDIVLIGNKADLP--DQREVNERQAREL-ADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

Query: 178 KNEPQ 182
           K   Q
Sbjct: 179 KRMEQ 183

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 2e-39
 Identities = 57/171 (33%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK++I+G+SGVGK+SL+ ++ +  F  +  ATIG DF  K +  +     L IWDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L  ++YRGA   +LVYDV      D             +     +   +++GNK D
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVT---RRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                +R V   +   + A K ++ + E SAK    V+ AFE + +  ++ 
Sbjct: 125 K---ENREVDRNEGLKF-ARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 2e-39
 Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 7/177 (3%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K +++G++G GK+ L++Q++ +KF +    TIG +F +K +    +   LQIWDTAGQ
Sbjct: 5   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+S+  ++YRGA   +LVYD+   ++++ L NW  +          +N   ++ GNK 
Sbjct: 65  ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA----RMLASQNIVIILCGNK- 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
                ++         +  A +  + + ETSA  G NVE AF   A+  L      E
Sbjct: 120 --KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 174

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  130 bits (328), Expect = 2e-39
 Identities = 111/173 (64%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
           +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV  +  ++ T+Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QERFQSLGVAFYRGADCCVLVYDV    SF+N+ +WR+EFL+ A+ + PE FPFV+LGNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
            D +  + ++VSEK A+    S G+IP F TSAK   NV+ AFE IA++AL+ 
Sbjct: 122 IDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 4e-39
 Identities = 59/167 (35%), Positives = 94/167 (56%), Gaps = 7/167 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K II+GD GVGK+ L++Q+  +KF      TIG +F T+ ++   +   LQIWDTAGQ
Sbjct: 4   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF+++  ++YRGA   ++VYD+    ++++L++W  +           N   +++GNK 
Sbjct: 64  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKA 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           D++        E K     A +  + + E SAK G NVE AF   AK
Sbjct: 120 DLEAQRDVTYEEAK---QFAEENGLLFLEASAKTGENVEDAFLEAAK 163

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (313), Expect = 5e-37
 Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L K II+GD+GVGK+ L+ Q+ +++F   +  TIG +F  + V  + +   LQIWDTAGQ
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F+S+  ++YRGA   +LVYD+   ++F++L +W E+    +S     N   +++GNK+
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKS 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           D++        +++     A +  + + ETSAK   NVE AF   AK   +   Q
Sbjct: 119 DLESRRDV---KREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 19/185 (10%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y    F  +Y  T+  D  +  V  + +   L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + +    SF+N+       +    P    N P +++G K D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLD 120

Query: 129 VDGGNSRVVSEK------------KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           +   + +   EK            +  A     G + Y E SA     ++  F+   +  
Sbjct: 121 LR--DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

Query: 177 LKNEP 181
           L   P
Sbjct: 179 LCPPP 183

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-35
 Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG+  VGKTSL+ +++   F N Y+ATIG DFL+K +  EDR   LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F+SL  ++ R +   V+VYD+  + SF     W ++   +       +   +++GNKTD+
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
                +     +     A + N+ + ETSAK G+NV+  F  +A 
Sbjct: 118 ---ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 159

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 16/188 (8%)

Query: 1   MASR-RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTL 59
           MA     ++LK +++GD  VGKT L+  Y N  F  +Y  T+  D     V    + + L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLL 59

Query: 60  QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
            ++DTAGQE +  L    Y   D  ++ + V    SF N+       L + +P    N P
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVP 115

Query: 120 FVVLGNKTD----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
           F+++G + D          ++    + +  ++ +      G   Y E SA     ++  F
Sbjct: 116 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 175

Query: 170 ECIAKNAL 177
           +      L
Sbjct: 176 DEAIIAIL 183

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  120 bits (300), Expect = 4e-35
 Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L KVI++G  GVGK++L  Q++  +F   Y+ T   D   K+V  +     + I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E + ++   ++R  +  + V+ +  M+SF    ++RE+ L      + EN PF+++GNK+
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 119

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++      V E K     A + N+ Y ETSAK   NV+  F  + +    
Sbjct: 120 DLEDKRQVSVEEAK---NRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 7e-35
 Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 15/186 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K +++GD  VGKT L+  Y   KF ++Y  T+  D     V      +TL ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + V    SF+N+       +    P      PF+++G + D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQID 118

Query: 129 VDGGNSRVVSEKK----------AKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +    S +    K          A+        + Y E SA     ++  F+     AL+
Sbjct: 119 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE 178

Query: 179 NEPQEE 184
               ++
Sbjct: 179 PPEPKK 184

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 9e-35
 Identities = 38/176 (21%), Positives = 78/176 (44%), Gaps = 8/176 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++ +LGD+  GK+SL+++++   +         ++   KE+  + +   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     F   AD  + V+ +    SF  ++      L              ++G +  
Sbjct: 64  DAK-----FSGWADAVIFVFSLEDENSFQAVSRLHG-QLSSLRGEGRGGLALALVGTQDR 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
           +   + RVV + +A+A CA      Y+ET A  G NV+  F+ +A+  +    Q++
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 57/171 (33%), Positives = 92/171 (53%), Gaps = 7/171 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             KV++LG+  VGKTSL+ +Y   KF++++  T+GA FLTK++    +   L IWDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           ERF +LG  +YR ++  +LVYD+    SF  + NW +E                ++GNK 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKI 118

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           D++      + E ++    A      ++ TSAK+   +E  F  + K  ++
Sbjct: 119 DLEKERHVSIQEAES---YAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (294), Expect = 3e-34
 Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 4/166 (2%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG++ VGK+S++ ++V+  F+   + TIGA FLT+ V   +     +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF SL   +YR A   ++VYDV   +SF    +W +E   Q      ++    ++GNK D
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----ASKDIIIALVGNKID 119

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +          ++     A +  + +FETSAK G NV   F  I +
Sbjct: 120 MLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-34
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 7/165 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L  Q+V   F  +Y  TI  DF  KE++ +     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F S+   + +     +LVY +   +SF ++   R++ +        E  P +++GNK D+
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +       SE +     A +   P+ ETSAK    V+  F  I +
Sbjct: 121 ESEREVSSSEGR---ALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 7/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG+S VGK+SL+ ++V  +F    ++TIGA FLT+ V  +D     +IWDTAGQER
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + SL   +YRGA   ++VYD+   +SF    NW +E   QASP    N    + GNK   
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNK--- 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
               ++   + +     A   ++ + ETSAK   NV   F  IAK   KN
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 1e-33
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++I+GD   GKT L+      +F   Y  T+  +    +++ + +   L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +  L    Y   D  ++ + ++   S +N+       +    P    N P +++GNK D
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKD 117

Query: 129 VDGGN----------SRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +                 V  ++ +      G   Y E SAK    V   FE   + AL+
Sbjct: 118 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 5e-33
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++G  GVGK++L  Q +   F ++Y  TI   +  + V        L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETCLLDILDTAGQEE 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           + ++   + R  +  + V+ +N  KSF++++ +RE+        D ++ P V++GNK D 
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKCD- 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
               +    E +     A    IPY ETSAK    VE AF  + +   ++
Sbjct: 120 ---LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (281), Expect = 2e-32
 Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 10/170 (5%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           + K+I++GDS VGKT L  ++   +F ++ +ATIG DF  + V  +     +Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 68  ERFQSLGV-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           ERF+   V  +YR     V VYD+  M SF +L  W EE           + P +++GNK
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNK 118

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIA 173
            D+   ++  V    A+ + A   ++P FETSAK   +  +VEA F  +A
Sbjct: 119 CDLR--SAIQVPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 51/169 (30%), Positives = 90/169 (53%), Gaps = 6/169 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K+++LG  GVGK++L  Q+V   F  +Y  TI  D   K+V+ + +   L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + +      LVY +    +F++L + RE+ L      D E+ P +++GNK D+
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDL 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +  + RVV +++ +       N  + E+SAK   NV   F  + +   +
Sbjct: 121 E--DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 2e-31
 Identities = 52/172 (30%), Positives = 94/172 (54%), Gaps = 8/172 (4%)

Query: 7   MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
           + +K++++G+  VGK+S++ +Y    F+  YK TIG DFL +++Q  D    L +WDTAG
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
           QE F ++  A+YRGA  CVLV+     +SF+ +++WRE+ + +                +
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-------DIPTALVQ 113

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
             +D  +   +  ++     A +  + ++ TS KE  NV   F+ +A+  L+
Sbjct: 114 NKIDLLDDSCIKNEE-AEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 3e-31
 Identities = 52/171 (30%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +++++G  GVGK++L  Q++   F   Y  TI  D  TK+   +DR   L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  +  +LV+ V    SF+ +  ++ + L      D + FP +++GNK D+
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADL 122

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           D        E +     A +  + Y E SAK   NV+ AF  + +   K +
Sbjct: 123 DHQRQVTQEEGQ---QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 7e-31
 Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 7/175 (4%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
             K++++G  GVGK++L  Q++   F + Y      D  TK    +     L I DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           E F ++   + R     +LV+ +N  +SF+ +     + L      D ++FP V++GNK 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKA 121

Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           D++   S+    +   +   +  ++ YFE SAK   NV+ AFE + +   K + Q
Sbjct: 122 DLE---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 1e-30
 Identities = 60/166 (36%), Positives = 89/166 (53%), Gaps = 7/166 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LKV +LGD+GVGK+S+M ++V   F      TIGA F+TK VQ+++ L    IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF++L   +YRG+   ++VYD+   ++F  L NW  E         P +    + GNK D
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           +      +  + K     A   +  + ETSAK   N+   F  I++
Sbjct: 121 LTDVREVMERDAK---DYADSIHAIFVETSAKNAININELFIEISR 163

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 8e-29
 Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 16/181 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++++GDS  GKT+L++ +    F   Y  T+  +  T   + + +   L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSP 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            + ++    Y  +D  ++ +D++  ++ D++    +  + +  P    N   +++G K+D
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSD 117

Query: 129 VDGG----------NSRVVSEKKAKAWCASKGNIPYFETSAKEGFN-VEAAFECIAKNAL 177
           +                 VS  +        G   Y E SA +  N V   F       +
Sbjct: 118 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

Query: 178 K 178
            
Sbjct: 178 N 178

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++++G    GKT+++ +    +       T            E +  +  +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +++     + V D N  +  +         L +    D      V    +  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA--VLLVFANKQDL 113

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
            +  N+  +++K          N     T A  G  +    + ++  
Sbjct: 114 PNAMNAAEITDKLGLHS-LRHRNWYIQATCATSGDGLYEGLDWLSNQ 159

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 10/174 (5%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD G GKT+ + +++  +F  +Y AT+G +                +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F  L   +Y  A C ++++DV    ++ N+ NW  + +        EN P V+ GNK D+
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDI 119

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
                +    K        K N+ Y++ SAK  +N E  F  +A+  + +   E
Sbjct: 120 -----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++++GD GVGK++L  Q+  + F   Y  TI  D   K  + +++   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++   + R  D  ++VY V    SF++++ + +  L      D E+FP +++ NK D+
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANKVDL 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAKNALK 178
              + R V+  +     A+K NIPY ETSAK+   NV+  F  + +   +
Sbjct: 122 M--HLRKVTRDQ-GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V + G  GVGK+SL+ ++V   F   Y  T+   +          + TLQI DT G  +
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD-KSICTLQITDTTGSHQ 62

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
           F ++           +LVY +   +S + L        I     D E+ P +++GNK D 
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIY--EQICEIKGDVESIPIMLVGNKCDE 120

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                   SE +     A      + ETSAK   NV+  F+ +     + 
Sbjct: 121 SPSREVQSSEAE---ALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 99.8 bits (247), Expect = 2e-27
 Identities = 36/168 (21%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++ ++G    GKT+ +N   + +F+     T+G +      +      T+++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           RF+S+   + RG    V + D    +  +   N     L +      +  P +VLGNK D
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP---QLQGIPVLVLGNKRD 115

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
           + G        +K          I  +  S KE  N++   + + +++
Sbjct: 116 LPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 98.2 bits (243), Expect = 1e-26
 Identities = 30/167 (17%), Positives = 61/167 (36%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L++++LG    GKT+++ ++           TI           E R F L IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    ++   D  + V D    +   +     +  L++           ++  NK D
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQD 114

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           + G  S    ++  +       +      SA  G ++    + +  +
Sbjct: 115 LPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 97.4 bits (241), Expect = 3e-26
 Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 8/172 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++ILG  G GKT+++ +    +     K TIG +  T   +       L +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLSYKN----LKLNVWDLGGQT 72

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y      + V D          +      L +    + ++   +V  NK D
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQD 129

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
             G  S     K+         +     +SA +G  +    + +     + +
Sbjct: 130 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 7e-26
 Identities = 26/167 (15%), Positives = 56/167 (33%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +++++LG    GKT+++ +    +       T+G +  T   +         +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTYKN----VKFNVWDVGGQD 67

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + L   +Y G    + V D       D             +  +  +   ++  NK D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQE---LHRIINDREMRDAIILIFANKQD 124

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           +         ++K         N     + A  G  +      +  N
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN 171

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 95.8 bits (237), Expect = 1e-25
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 8/175 (4%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           + S     +++++LG    GKT+L+ Q  +   S+    T G +  + + Q     F L 
Sbjct: 9   LKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQSQG----FKLN 63

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
           +WD  GQ + +    +++   D  + V D    K F+       E L +         P 
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE---KLSCVPV 120

Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           ++  NK D+          +                 SA  G  V+     + KN
Sbjct: 121 LIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 6e-25
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 9/171 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+ I G +GVGK++L+ +++ ++F  +Y  T+ + +   +   +D + +++I DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 61

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
                     R  +  VLVYD+    SF+ +   +           P+N   +++GNK D
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI---KKPKNVTLILVGNKAD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-FNVEAAFECIAKNALK 178
           +D        E +     A++    ++E SA  G  N+   F  + +   +
Sbjct: 118 LDHSRQVSTEEGE---KLATELACAFYECSACTGEGNITEIFYELCREVRR 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.4 bits (228), Expect = 2e-24
 Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 15/172 (8%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           K++ LG    GKT+L++   N + +     T+   +     +          +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L   ++   +  V + D    + FD      +     A   + ++ PFV+LGNK D 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDA 113

Query: 130 DGGNSRV-------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
               S         +           +  +  F  S         AF+ +++
Sbjct: 114 PNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (222), Expect = 1e-23
 Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 7/170 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K+ ILG   VGK+SL  Q+V  +F + Y  TI  +  TK +    + + LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
            +      +    +  +LVY V  +KSF+ +     + L           P +++GNK D
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDM---VGKVQIPIMLVGNKKD 120

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           +         E K     A   N  + E+SAKE       F  I   A K
Sbjct: 121 LHMERVISYEEGK---ALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 8/172 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++++ILG  G GKT+++ +    +       T              +    Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVV-----TTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +     +Y   D  + V D           +     L +    +      VV  NK D
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEE---EELRKAILVVFANKQD 117

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
           ++   +                    F+TSA +G  ++ A E + +     +
Sbjct: 118 MEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 28/167 (16%), Positives = 51/167 (30%), Gaps = 8/167 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            KVII+G    GKT+++ Q+   +  +           +   +         +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
             +S    +Y   +  ++V D    +          + L      D      ++  NK D
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQD 127

Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           V    +     +  K               A  G  +    E +   
Sbjct: 128 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 174

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (211), Expect = 6e-22
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 8/174 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           KV++LG  GVGK++L   +   +   +           + +  +    +L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            + L        D  V+VY V    SF       E  +        ++ P +++GNK+D+
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSF---EKASELRVQLRRARQTDDVPIILVGNKSDL 117

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
                  V E +    CA   +  + ETSA    NV+A FE + +        +
Sbjct: 118 VRSREVSVDEGR---ACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 7e-22
 Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 4/171 (2%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           +V+++G+ GVGK++L N +     S      +  +   +     D      I     + +
Sbjct: 5   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 64

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
            ++  +  +           V  +    +     E  +        E+ P +++GNK+D+
Sbjct: 65  GENEWLHDHCMQVGDA-YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
                  VSE +    CA   +  + ETSA    NV+  FE I +      
Sbjct: 124 VRCREVSVSEGR---ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.0 bits (199), Expect = 1e-19
 Identities = 21/176 (11%), Positives = 48/176 (27%), Gaps = 17/176 (9%)

Query: 6   RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA 65
           R   ++++LG    GK++++ Q            T G      + Q +       ++D  
Sbjct: 4   RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSG--IFETKFQVDK--VNFHMFDVG 55

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-------EEFLIQASPSDPENF 118
           GQ   +   +  +      + V   +        +N           F    +       
Sbjct: 56  GQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 115

Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
             ++  NK D+     +V++ K        +         A      +        
Sbjct: 116 SVILFLNKQDLLAE--KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKY 169

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.3 bits (197), Expect = 2e-19
 Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 42/206 (20%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
           L+K+++LG    GK++ + Q    +  +    T G         FE +    ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQ 54

Query: 68  ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-------EEFLIQASPSDPENFPF 120
              +      +      + +   +        +            F    +     N   
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 121 VVLGNK------------------------TDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156
           ++  NK                          +      +V   + K     +  + +  
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 157 TSAKEGFNVEAAF----ECIAKNALK 178
           T+A    N+   F    + I  + LK
Sbjct: 175 TTAINTENIRLVFRDVKDTILHDNLK 200

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 27/185 (14%), Positives = 60/185 (32%), Gaps = 8/185 (4%)

Query: 10  KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
            V+ +G    GKT L  + +  ++ +    +I       +V          I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 70  FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
              L   F   A   V V D    +            ++  S +   +   ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 DGGNS-RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLP 188
               S +++ ++  K     +       T +     ++++    A+   K +  E   LP
Sbjct: 121 AMAKSAKLIQQQLEKELNTLR------VTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLP 174

Query: 189 DTIDV 193
             ++ 
Sbjct: 175 LKVEF 179

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.1 bits (191), Expect = 9e-19
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 43/203 (21%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +K+++LG    GK++++ Q      +       G      E  F  +    +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEA-----GTG----IVETHFTFKDLHFKMFDVGGQR 53

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDN-------LNNWREEFLIQASPSDPENFPFV 121
             +   +  + G    +    ++              ++   + F    +     +   +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFE 156
           +  NK D+     ++        +    G                          I    
Sbjct: 114 LFLNKKDLF--EEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF 171

Query: 157 TSAKEGFNVEAAFECIAKNALKN 179
           T A +  NV+  F+ +    +KN
Sbjct: 172 TCATDTKNVQFVFDAVTDVIIKN 194

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (185), Expect = 9e-18
 Identities = 26/203 (12%), Positives = 58/203 (28%), Gaps = 40/203 (19%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           LK+++LG    GK++ + Q      S     T G         F+ +    ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-------EEFLIQASPSDPENFPFV 121
             +   +  +      + +  ++        ++           F    +    +N   +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFE 156
           +  NK D+     +++       +    G                          I    
Sbjct: 117 LFLNKKDLL--EEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHF 174

Query: 157 TSAKEGFNVEAAFECIAKNALKN 179
           T A +  N+   F  +    L+ 
Sbjct: 175 TCATDTENIRFVFAAVKDTILQL 197

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 24/179 (13%), Positives = 51/179 (28%), Gaps = 20/179 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
            K++ LG    GKT+L++   + +                  +      T   +D  G  
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGHI 68

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           + + +   +    +  V + D    +         +  +         N P ++LGNK D
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKID 125

Query: 129 VD------------GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
                         G   +   +        +   +  F  S  +       F  +A+ 
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 184

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 2e-14
 Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 16/194 (8%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +II G    GKTSL+            + T+ +        ++    TL  +    + R+
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61

Query: 71  QS---LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
           +    L            +V      K       +  + L     S       ++  NK+
Sbjct: 62  KLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKS 121

Query: 128 DVDGGNS-RVVSEKKAKAWCA----SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
           ++        + +             K ++   E    E    E   + +       +  
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVL----QSTDGF 177

Query: 183 EEDYLPDTIDVGGG 196
           +   L  ++    G
Sbjct: 178 KFANLEASVVAFEG 191

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 57.7 bits (138), Expect = 3e-11
 Identities = 30/179 (16%), Positives = 50/179 (27%), Gaps = 11/179 (6%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--- 67
           V ++G    GK+SL+                        V          + D  G    
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSP-NLGVVEVSEEERFTLADIPGIIEG 62

Query: 68  -ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
               + LG+ F R      ++  V                 + A        P +V  NK
Sbjct: 63  ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122

Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
            D+           KA A   ++  +     SA  G  + A  E +    +++ P  E 
Sbjct: 123 VDLLEEE-----AVKALADALAREGLAVLPVSALTGAGLPALKEALHA-LVRSTPPPEM 175

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 2/169 (1%)

Query: 8   LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
           L ++ + G S VGK+S +N  +NRK   +  +  G           D L  + +     A
Sbjct: 23  LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82

Query: 66  GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
              + +                    V++  D  +    + +           P +V+  
Sbjct: 83  KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIAT 142

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           K D           K  +              S++     + A+  I K
Sbjct: 143 KADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK 191

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 56.7 bits (135), Expect = 6e-11
 Identities = 29/170 (17%), Positives = 46/170 (27%), Gaps = 14/170 (8%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV+I G    GK+SL+N    R+ +       G                L I DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASP---SDPENFPFVVLGN 125
                            +     V+   D       +            P   P  V+ N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
           K D+                 +          SA+ G  V+     + ++
Sbjct: 121 KADI----------TGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 37/190 (19%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           V ++G   VGK++L++   + K     Y  T     L      + R F   + D  G   
Sbjct: 4   VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFV--MADLPGLIE 61

Query: 70  FQS----LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF----PFV 121
                  LG  F R  +   ++  V  M   +  + + +   I    S+        P +
Sbjct: 62  GAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI 121

Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
           ++ NK D+        +E           + P F  SA     +      +A N L+N P
Sbjct: 122 IVANKMDMPE-----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVA-NQLENTP 175

Query: 182 QEEDYLPDTI 191
           +   Y  + +
Sbjct: 176 EFPLYDEEEL 185

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 53.6 bits (127), Expect = 1e-09
 Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 8/179 (4%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V I+G   VGK++L+N  +  K +                   +    +   DT G  + 
Sbjct: 8   VAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 66

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130
                 F        L     V+   D  +    E  + A    P      +L     +D
Sbjct: 67  MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126

Query: 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD 189
                   E+  KA+            SA +   V      +        P+   + P+
Sbjct: 127 AAKYP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM----PEGPFFYPE 178

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 53.2 bits (126), Expect = 1e-09
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 3/168 (1%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           ++V   G S  GK+S +N   N+K   +   T G   L    +  D    + +      E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 69  RFQSLGVAFYRGADCC---VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
             + +   + R               V+           +  +     D      V+L  
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
              +  G  +       +A  A  G++     S+ +   V+   + + 
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (120), Expect = 9e-09
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 7/179 (3%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           + I+G   VGK++L+N+ + +K S   +           +  E     +   DT G    
Sbjct: 8   IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHME 66

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130
           +   +           + DV ++        W  +  +  +       P ++  NK D  
Sbjct: 67  EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 126

Query: 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEDYLPD 189
              + ++   +  A       +     SA+ G NV+     + K+     P+   + P+
Sbjct: 127 QEKADLLPHLQFLASQ--MNFLDIVPISAETGLNVDTIAAIVRKHL----PEATHHFPE 179

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 32/177 (18%), Positives = 56/177 (31%), Gaps = 8/177 (4%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           +KV I+G   VGK++L N  +N++ +       G      + +           DTAG  
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67

Query: 69  RFQSLGVAFYRGADCCVLVY-----DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
           R   +            +V      DV V+         R++  +            VV 
Sbjct: 68  RKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVF 127

Query: 124 GNKTDV-DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
                V           K  +         P   TSA +G+N++   + +   A  +
Sbjct: 128 NKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM-NLAYAS 183

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.3 bits (116), Expect = 3e-08
 Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 13/177 (7%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           +I  G S VGK++L+ +   +K     +  +    +  E +    +         G  + 
Sbjct: 3   IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62

Query: 71  QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQA----SPSDPE--------NF 118
               +             +++V     +     E           P D E        + 
Sbjct: 63  VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122

Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCA-SKGNIPYFETSAKEGFNVEAAFECIAK 174
           P +V  NK D       V++    K     S+ +  +   SAK G N+E     I +
Sbjct: 123 PTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFE 179

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.2 bits (113), Expect = 7e-08
 Identities = 32/176 (18%), Positives = 65/176 (36%), Gaps = 8/176 (4%)

Query: 11  VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
           V+I+G   VGK++L N+ V +K +   +   G      +   E    T ++ DT G    
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 71  QSLGVAFYRGADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
               ++         ++ + ++ +   D      +E    A          +++ NK + 
Sbjct: 62  PQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 121

Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEED 185
                    E++ K    S G       SA+   N++   E I K  L+ +  + +
Sbjct: 122 LR-----EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKK-LEEKGLDLE 171

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           L+++I+G   VGK++L+N+ +N   +       G        +   R    +I DTAG  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEEIVIRGILFRIVDTAGVR 59

Query: 69  RFQSLGVAFY---------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
              +  V              AD  + V D +     ++                  N  
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIK----------NKR 109

Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
           ++V+ NK DV    +    + K              + SA +G  +E   E I +
Sbjct: 110 YLVVINKVDVVEKINEEEIKNKLGTD------RHMVKISALKGEGLEKLEESIYR 158

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (114), Expect = 2e-07
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 7/135 (5%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV--QFEDRLFTLQIWDTAG 66
           L V + G++G GK+S +N         +  A  G   +T E        +  +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 67  QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
                     +          YD  ++ S         +              F  +  K
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIISATRFKKNDIDIAKAI---SMMKKEFYFVRTK 171

Query: 127 TDVDGGNSRVVSEKK 141
            D D  N      + 
Sbjct: 172 VDSDITNEADGEPQT 186

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.4 bits (88), Expect = 2e-04
 Identities = 24/159 (15%), Positives = 46/159 (28%), Gaps = 10/159 (6%)

Query: 16  DSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75
             G  +T++      +K              + +     R  +    D  G E   +  +
Sbjct: 47  KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI--DAPGHEVLMATML 104

Query: 76  AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135
           +     D  +LV   N                I            +++ NK DV      
Sbjct: 105 SGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEA 158

Query: 136 VVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECI 172
           +   ++ K +       N+P    SA    N+++  E I
Sbjct: 159 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGI 197

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 19/204 (9%)

Query: 1   MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
           +       L ++++G  GVGK+S +N  +  +  +              V      FTL 
Sbjct: 25  LKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLN 83

Query: 61  IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWR-----EEFLIQASPSDP 115
           I DT G      +           +L   ++V+   D L+ +R     +      + S  
Sbjct: 84  IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFG 143

Query: 116 ENF--PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
           +      +V          +     E  +K   A    +      +      +A    I 
Sbjct: 144 KGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVV-----RSGASLKKDAQASDIP 198

Query: 174 KNALKNEPQ------EEDYLPDTI 191
              ++N  +      +E  LP+ I
Sbjct: 199 VVLIENSGRCNKNDSDEKVLPNGI 222

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 11  VIIL-GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
           ++ L GD G GKT+L    +          +     + +       ++   ++  A  E 
Sbjct: 35  MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94

Query: 70  FQSLGVAFYRGADCCVLV 87
            + +G+  Y   D   L+
Sbjct: 95  LEFMGIRDYFNTDSICLI 112

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 24/184 (13%), Positives = 43/184 (23%), Gaps = 22/184 (11%)

Query: 9   LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
           + + I G    GKT+L           +  +T   D L +  +    +            
Sbjct: 6   INLGIFGHIDHGKTTLSKVLT------EIASTSAHDKLPESQKRGITIDIGFSAFKLENY 59

Query: 69  RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
           R               ++   V+     D      +      + +               
Sbjct: 60  RITL----VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115

Query: 129 VDGGNSRVVSEKKAK----------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
           V    S     ++ K              +  N      SAK GF V+     I      
Sbjct: 116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL-- 173

Query: 179 NEPQ 182
           N  +
Sbjct: 174 NNAE 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.93
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.91
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.9
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.89
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.89
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.88
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.83
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.8
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.78
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.76
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.76
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.76
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.75
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.68
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.67
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.63
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.55
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.45
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.43
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.43
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.39
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.29
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.17
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.76
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.56
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.43
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.41
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.41
d1okkd2	207	GTPase domain of the signal recognition particle r	98.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.32
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.27
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.25
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.19
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.05
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.87
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.82
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.82
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.8
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.8
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.73
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.69
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.69
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.66
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.65
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.62
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.59
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.57
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.57
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.55
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.55
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.52
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.52
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.5
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.49
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.47
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.45
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.44
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.42
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.42
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.41
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.41
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.41
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.4
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.39
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.37
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.37
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.34
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.33
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.33
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.32
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.31
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.3
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.28
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.28
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.27
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.25
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.25
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.23
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.23
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.22
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.22
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.2
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.2
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.2
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.18
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.17
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.16
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.15
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.12
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.09
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.07
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.07
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.06
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.06
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.05
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.96
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.94
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.89
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.85
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.85
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.84
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.84
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.78
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.74
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.67
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.67
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.66
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.65
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.62
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.57
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.55
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.55
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.53
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.52
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.47
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.46
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.43
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.36
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.32
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.19
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.07
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.05
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.05
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.04
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.04
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.03
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.99
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.98
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.96
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.96
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.88
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.8
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.79
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.73
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.71
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.65
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.61
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.58
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.56
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.49
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.45
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.37
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.35
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.3
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.28
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.25
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.24
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.19
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.12
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.02
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.01
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.97
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.97
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.95
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.69
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.67
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.61
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.56
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.56
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.53
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.17
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.97
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.87
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.97
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.73
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.06
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.99
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.94
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.9
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.73
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.63
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.56
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.69
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.79
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.06
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.04
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.85
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.8
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.76
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.65
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.53
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.38
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.3
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.16
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	87.75
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.25
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.79
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	84.8
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	82.99
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	82.81
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.04
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.01
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.78

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4e-36  Score=205.09  Aligned_cols=166  Identities=35%  Similarity=0.675  Sum_probs=149.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|.+|+|||||+++|.++.+...+.++.+.+.....+......+.+.+|||||++++...+..+++.+|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            56899999999999999999999999888888898888888888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++++++..+..|+..+......    +.|+++|+||.|+...  ..+..++++.+++..+ .+++++||++|.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iivv~nK~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv~  156 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWD----NAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINVK  156 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCS----CCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCC----cceEEEEEeecccccc--cccchhhhHHHHHHcC-CEEEEecCCCCcCHH
Confidence            99999999999998888777655432    6789999999998754  5677888888988887 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028654          167 AAFECIAKNALKN  179 (206)
Q Consensus       167 ~l~~~i~~~~~~~  179 (206)
                      ++|++|++.+.++
T Consensus       157 e~f~~l~~~i~ek  169 (169)
T d3raba_         157 QTFERLVDVICEK  169 (169)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998763

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-36  Score=205.28  Aligned_cols=163  Identities=34%  Similarity=0.709  Sum_probs=149.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|.+|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||++|+.++......+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999998888899988888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      ||++++++++.+..|+..+.....     +.|+++|+||+|+...  +.+..++++.+++..+ ++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~iilVgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e  153 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSE  153 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-----SCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSSHH
T ss_pred             EeccchhhhhhcccccccccccCC-----CceEEEeeccCCcccc--eeeeehhhHHHHHHcC-CEEEEeccCCCcCHHH
Confidence            999999999999999999887764     7899999999999754  6678888999998887 7999999999999999


Q ss_pred             HHHHHHHHHhh
Q 028654          168 AFECIAKNALK  178 (206)
Q Consensus       168 l~~~i~~~~~~  178 (206)
                      +|++|++.+++
T Consensus       154 ~f~~l~~~~lq  164 (164)
T d1z2aa1         154 VFKYLAEKHLQ  164 (164)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-36  Score=204.03  Aligned_cols=166  Identities=39%  Similarity=0.648  Sum_probs=150.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|.+|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            46899999999999999999999999988888998889999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|.+++.++..+..|+..+......    ..|+++|+||+|+...  ..+..++++.++...+ .+++++||++|.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~----~~~~ilvgnK~D~~~~--~~v~~~~~~~~~~~~~-~~~~~~SAktg~gV~  156 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASN----KVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNVE  156 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccc----cccEEEEEeecccccc--cchhhhHHHHHHHhCC-CEEEEEccCCCCCHH
Confidence            99999999999999998888765432    6799999999998754  5677788888988877 799999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028654          167 AAFECIAKNALKN  179 (206)
Q Consensus       167 ~l~~~i~~~~~~~  179 (206)
                      ++|.+|++.++++
T Consensus       157 e~f~~l~~~l~~~  169 (171)
T d2ew1a1         157 KLFLDLACRLISE  169 (171)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999888764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-36  Score=204.15  Aligned_cols=169  Identities=33%  Similarity=0.536  Sum_probs=149.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+++|.+|||||||+++|..+.+...+.++. .+.....+.+++..+.+.+||++|++++......+++.+|+++
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            457899999999999999999999999888777775 4555677888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++.++..+..|+..+......   .+.|+++|+||+|+...  +....++...++...+ .+|++|||++|.|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~g~gv  156 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAKLRLNV  156 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSH
T ss_pred             eecccccccccchhhhhhHHHHHHhcc---CCCceEEEEEeechhhc--cccchhhhhHHHHhcC-CEEEEEeCCCCcCH
Confidence            999999999999999999988765433   27799999999998754  5677788999998887 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|+.|++.+.++++
T Consensus       157 ~e~f~~l~~~i~k~~~  172 (173)
T d2fn4a1         157 DEAFEQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=204.61  Aligned_cols=169  Identities=25%  Similarity=0.415  Sum_probs=145.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|.+|+|||||+++|..+.+...+.++.+. .........+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            4689999999999999999999999998888888764 445666678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcEEE
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      |||++++++++.+..|+.........    +.|+++|+||+|+.+.          ....+..++.+.++...+..+|++
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e  156 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCP----KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE  156 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCT----TCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEE
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCC----CCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEE
Confidence            99999999999997655555444332    7899999999998643          224578889999999987789999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +||++|.|++++|+.+++.+++.+
T Consensus       157 ~SAk~~~~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         157 CSALTQKGLKNVFDEAILAALEPP  180 (191)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHTSCC
T ss_pred             EeCCCCcCHHHHHHHHHHHHhcCc
Confidence            999999999999999999887653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-36  Score=203.31  Aligned_cols=165  Identities=37%  Similarity=0.644  Sum_probs=144.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            57899999999999999999999999999999999888988898899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||++++++++.+..|+..+......    ..|+++|+||+|+...  +.+..++++.+++..+ .+++++||++|.|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~--~~v~~~e~~~~a~~~~-~~~~e~Sak~~~~v~  154 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKGIE  154 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHH
T ss_pred             EEeCCchhHHHhhhhhhhhccccccc----ccceeeeccccccccc--cccchHHHHHHHHHcC-CeEEEEecCCCcCHH
Confidence            99999999999999998877665433    6689999999999765  6788899999999887 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|.+|++.+++
T Consensus       155 e~F~~l~~~i~~  166 (167)
T d1z08a1         155 ELFLDLCKRMIE  166 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.9e-35  Score=200.73  Aligned_cols=167  Identities=29%  Similarity=0.520  Sum_probs=148.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      .+.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||++|++.+......+++.+|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            4679999999999999999999999988888878775444 566778899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC-C
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-N  164 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~  164 (206)
                      +|||+++++++..+..|+..+.+.....   +.|+++|+||+|+...  +.+..+++.+++...+ ++|+++||+++. |
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~e~~~~~~~~~~-~~~~e~Sak~~~~n  154 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDPPLN  154 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSSCBS
T ss_pred             EecccccchhhhccchhhHHHHhhcccc---CccEEEEecccchhhh--ceeehhhHHHHHHHcC-CEEEEEcCCCCCcC
Confidence            9999999999999999999988775432   6799999999999876  6788899999999988 799999999886 9


Q ss_pred             HHHHHHHHHHHHhhc
Q 028654          165 VEAAFECIAKNALKN  179 (206)
Q Consensus       165 i~~l~~~i~~~~~~~  179 (206)
                      ++++|..|++.+.++
T Consensus       155 V~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         155 VDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-35  Score=203.44  Aligned_cols=172  Identities=26%  Similarity=0.428  Sum_probs=146.8

Q ss_pred             ccccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecC
Q 028654            2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA   81 (206)
Q Consensus         2 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~   81 (206)
                      +.+....+||+++|.+|+|||||+++|..+.+...+.++.+ ......+...+..+.+.+||++|++.+...+..+++.+
T Consensus         3 ~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a   81 (185)
T d2atxa1           3 HGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT   81 (185)
T ss_dssp             SCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTC
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccc
Confidence            34466789999999999999999999999998888888875 44566677888899999999999999999999999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCC
Q 028654           82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGN  151 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~  151 (206)
                      |++++|||++++++++.+..|+....+....    +.|+++|+||+|+.+.          ..+.+..++...+++..+.
T Consensus        82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~----~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~  157 (185)
T d2atxa1          82 DVFLICFSVVNPASFQNVKEEWVPELKEYAP----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  157 (185)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHST----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             ceeeeccccchHHHHHHHHHHHHHHHHhcCC----CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCC
Confidence            9999999999999998875555555444332    7899999999998753          2356788899999999887


Q ss_pred             CcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          152 IPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       152 ~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ..|++|||++|.|++++|+.++++++.
T Consensus       158 ~~~~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         158 CCYVECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CEEEEecCCCCcCHHHHHHHHHHHHcC
Confidence            899999999999999999999998854

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-35  Score=199.36  Aligned_cols=172  Identities=53%  Similarity=0.984  Sum_probs=152.9

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC   83 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   83 (206)
                      .+++.+||+|+|.+|||||||+++|..+.+...+.++.+...........+..+.+.+||++|..........++..+++
T Consensus         2 ~~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   81 (174)
T d1wmsa_           2 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   81 (174)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccce
Confidence            35678999999999999999999999999988888888888888888889999999999999999988889999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC
Q 028654           84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF  163 (206)
Q Consensus        84 vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  163 (206)
                      +++++|.+++.++..+..|+..+..........+.|+++|+||+|+.+   +.+..++++.+++..+..+|+++||++|.
T Consensus        82 ~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~---~~v~~~~~~~~~~~~~~~~~~e~Sak~~~  158 (174)
T d1wmsa_          82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDAT  158 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred             EEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh---ccCcHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence            999999999999999999999998887776667899999999999864   56788899999988777899999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 028654          164 NVEAAFECIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~  178 (206)
                      |++++|++|++.++.
T Consensus       159 gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         159 NVAAAFEEAVRRVLA  173 (174)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=200.06  Aligned_cols=163  Identities=38%  Similarity=0.687  Sum_probs=148.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+.++......+++..+.+.+||++|++.+......+++.+|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            56899999999999999999999999988888888888988999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|+++.+++..+..|+..+......    ..|+++++||+|+...  .....+++..+++..+ .+++++||++|.|++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Saktg~~v~  155 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGENVE  155 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccc----cceEEEEcccccchhh--cccHHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            99999999999999999888765443    6799999999998654  5677788889988877 799999999999999


Q ss_pred             HHHHHHHHHH
Q 028654          167 AAFECIAKNA  176 (206)
Q Consensus       167 ~l~~~i~~~~  176 (206)
                      ++|+.|++.+
T Consensus       156 e~f~~i~~~i  165 (166)
T d1z0fa1         156 DAFLEAAKKI  165 (166)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-35  Score=200.21  Aligned_cols=164  Identities=32%  Similarity=0.463  Sum_probs=146.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+......++..+|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            458999999999999999999999988888888877665 5677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||+++++++..+..|+..+.......   +.|+++|+||+|+...  +.+..+++..+++..+ .+|+++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilvgnK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~Sak~~~~v~  155 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTAV  155 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhccccc---ccceeeeccccccccc--cchhHHHHHHHHHHcC-CEEEEEecCCCCCHH
Confidence            999999999999999999987765432   7899999999998754  6688889999999887 899999999999999


Q ss_pred             HHHHHHHHHHh
Q 028654          167 AAFECIAKNAL  177 (206)
Q Consensus       167 ~l~~~i~~~~~  177 (206)
                      ++|..|++.+.
T Consensus       156 ~~f~~li~~~~  166 (167)
T d1xtqa1         156 DVFRRIILEAE  166 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998775

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-35  Score=199.20  Aligned_cols=165  Identities=39%  Similarity=0.671  Sum_probs=150.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..+||+++|.+|+|||||+++|..+.+...+.++.+................+.+||++|++.+......+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            46799999999999999999999999999999999888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||+++++++..+..|+..+......    +.|+++|+||+|+...  +.+..++++.++...+ ++|+++||++|.|+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~nV  154 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPP----SIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAINI  154 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCC----cceEEEecccchhccc--cchhHHHHHHHHHHcC-CEEEEEecCCCCCH
Confidence            999999999999999998887766543    7899999999999654  6788889999999887 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|.+|++.++
T Consensus       155 ~e~f~~l~~~i~  166 (167)
T d1z0ja1         155 NELFIEISRRIP  166 (167)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC
Confidence            999999999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.9e-35  Score=200.50  Aligned_cols=165  Identities=32%  Similarity=0.546  Sum_probs=144.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+|+|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++++......+++.+|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999998888888877655 4567789999999999999999998888999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|.+++.++..+..|+..+......   ++.|+++|+||+|+...  +.+..++++.+++..+ ++++++||++|.|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piiivgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gv~  155 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKED---ENVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD  155 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCC---TTSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCC---CCCcEEEEecccccccc--ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHH
Confidence            99999999999999999998876533   37899999999998654  6778899999999887 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|.+|++.+.+
T Consensus       156 e~f~~l~~~i~~  167 (168)
T d1u8za_         156 KVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
Confidence            999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-35  Score=200.48  Aligned_cols=163  Identities=24%  Similarity=0.324  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|+|||||+++|.+..+.. ..+ ++...+...+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGP-EAE-AAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCC-cCC-eeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            799999999999999999999876543 223 334445667788999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++.+++.+..|+..+......   .++|+++|+||+|+...  +++..++.+.++...+ .+|+++||++|.|++++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~---~~~piilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~v~~~  153 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQT---DDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQAL  153 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC-----CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-SEEEECBTTTTBSHHHH
T ss_pred             cccccccccccccccchhhccccc---ccceEEEeecccchhhh--cchhHHHHHHHHHhcC-CEEEEEeCCCCcCHHHH
Confidence            999999999999999998776432   36799999999999764  5678888999998887 89999999999999999


Q ss_pred             HHHHHHHHhhc
Q 028654          169 FECIAKNALKN  179 (206)
Q Consensus       169 ~~~i~~~~~~~  179 (206)
                      |.+|++.+..+
T Consensus       154 f~~l~~~i~~~  164 (168)
T d2gjsa1         154 FEGVVRQIRLR  164 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999987664

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-35  Score=201.59  Aligned_cols=173  Identities=65%  Similarity=1.070  Sum_probs=138.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeC-CeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +.+||+++|++|||||||+++|.++.+...+.++.+........... .....+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            35899999999999999999999998888877877766666555543 44577899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|.+++.++..+..|+.++..........++|+++|+||+|+... ...+..++.++++...+..+++++||++|.|+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv  159 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-KKIVSEKSAQELAKSLGDIPLFLTSAKNAINV  159 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhh-hcchhHHHHHHHHHHcCCCeEEEEeCCCCcCH
Confidence            99999999999999999999988777666668999999999998753 24467788888998887789999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      +++|++|++.++++.
T Consensus       160 ~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         160 DTAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-35  Score=199.39  Aligned_cols=162  Identities=38%  Similarity=0.675  Sum_probs=147.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|.+|||||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+......++..+|++++|+
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999888999888888888888889999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      |++++.++..+..|+..+......    +.|+++|+||+|+...  .....++...+++..+ .+++++||++|.|++++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~SAk~g~~v~e~  153 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNVKQL  153 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCC----CceEEEEecccchhhh--hhhhHHHHHHHHHHcC-CEEEEecCCCCcCHHHH
Confidence            999999999999999988876543    7899999999999754  5667788888998887 88999999999999999


Q ss_pred             HHHHHHHHh
Q 028654          169 FECIAKNAL  177 (206)
Q Consensus       169 ~~~i~~~~~  177 (206)
                      |.+|+++++
T Consensus       154 f~~i~~~l~  162 (164)
T d1yzqa1         154 FRRVAAALP  162 (164)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHhhC
Confidence            999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=198.82  Aligned_cols=166  Identities=25%  Similarity=0.453  Sum_probs=143.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      ..||+|+|.+|+|||||+++|..+.+...+.++.+ ..........+..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            46999999999999999999999998888888765 44456667888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcEEEe
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ||++++++++.+..|+.........    +.|+++|+||+|+...          ....+..++...+++..+..+|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~  156 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCP----NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMEC  156 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCC----CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEe
Confidence            9999999999887666555554432    7899999999999753          1245678888899999887899999


Q ss_pred             eccCCCCHHHHHHHHHHHHhh
Q 028654          158 SAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ||++|.|++++|+.+++++++
T Consensus       157 SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         157 SAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHhC
Confidence            999999999999999998874

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-35  Score=200.83  Aligned_cols=168  Identities=37%  Similarity=0.664  Sum_probs=150.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+|+|.+|||||||+++|..+.+...+.++.+.......+..+.....+.+||+||++.+...+..+++.++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            46899999999999999999999999988888888888888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|.++++++..+..|+..+......    +.|+++|+||+|+...  .....+....++...+ .+++++||++|.|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~~~gi~  156 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQ----NIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSALTGENVE  156 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred             EEecccchhHHHHhhhhcccccccCC----ceEEEEEEecccccch--hchhhhHHHHHHHhCC-CEEEEeeCCCCcCHH
Confidence            99999999999999999988776543    7899999999998654  5666777788888776 899999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 028654          167 AAFECIAKNALKNEP  181 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (206)
                      ++|.+|++.++++.+
T Consensus       157 e~f~~l~~~i~~~~~  171 (174)
T d2bmea1         157 EAFVQCARKILNKIE  171 (174)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999887644

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=200.84  Aligned_cols=170  Identities=37%  Similarity=0.673  Sum_probs=152.9

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+|+|.+|||||||+++|.++.+...+.++.+..+....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            56799999999999999999999999988888999988888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|+++++++..+..|+..+.....    .+.|+++|+||+|+.+.  .....++...++...+ ..++++||++|.|+
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~SAk~g~gi  156 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSALDSTNV  156 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTTTCTTH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhhccc----CCceEEEEEeccccccc--cchhHHHHhhhhhccC-cceEEEecCcCccH
Confidence            99999999999999888888766543    27899999999999876  6677788888887776 88999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 028654          166 EAAFECIAKNALKNEPQ  182 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~~  182 (206)
                      +++|++|++.+.+....
T Consensus       157 ~e~f~~l~~~i~~~~~~  173 (194)
T d2bcgy1         157 EDAFLTMARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999876654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=198.08  Aligned_cols=166  Identities=31%  Similarity=0.544  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|.+|||||||++++.++.+...+.++.+ ......+.+++..+.+.+||++|.+.+......+++.+|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            48999999999999999999999988888877765 55567778899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|.++++++..+..|+..+.......   +.|+++|+||+|+...  +.+..+++..+++..+ .+|+++||++|.|+++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~~~~i~e  157 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRD---EFPMILIGNKADLDHQ--RQVTQEEGQQLARQLK-VTYMEASAKIRMNVDQ  157 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSS---CCSEEEEEECTTCTTS--CSSCHHHHHHHHHHTT-CEEEECBTTTTBSHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccC---CCCEEEEEeccchhhh--ccchHHHHHHHHHHcC-CEEEEEcCCCCcCHHH
Confidence            99999999999999998887765433   6799999999999765  6678889999998887 8999999999999999


Q ss_pred             HHHHHHHHHhhcC
Q 028654          168 AFECIAKNALKNE  180 (206)
Q Consensus       168 l~~~i~~~~~~~~  180 (206)
                      +|..|++.+.+.+
T Consensus       158 ~f~~l~~~i~k~~  170 (171)
T d2erya1         158 AFHELVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-36  Score=203.60  Aligned_cols=165  Identities=28%  Similarity=0.614  Sum_probs=140.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      -.+||+++|.+|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|+..+...+..+++.+|++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            36899999999999999999999999888889999888888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||++++++++.+..|+..+.+...     +.|+++|+||+|+.....    .++...++...+ .+|+++||++|.|++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~-----~~piilvgnK~Dl~~~~~----~~~~~~~~~~~~-~~~~e~Sak~~~~v~  151 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN-LQYYDISAKSNYNFE  151 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHHC-----SCCEEEEEECCCCSCSCC----TTTSHHHHSSCS-SEEEEEBTTTTBTTT
T ss_pred             ccccccccccchhHHHHHHHhhccC-----CCceeeecchhhhhhhhh----hhHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence            9999999999999999998887654     789999999999976421    223345555554 899999999999999


Q ss_pred             HHHHHHHHHHhhcCC
Q 028654          167 AAFECIAKNALKNEP  181 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~  181 (206)
                      ++|.+|++.++.++.
T Consensus       152 e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         152 KPFLWLARKLIGDPN  166 (170)
T ss_dssp             HHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHccCCC
Confidence            999999999986543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-35  Score=198.37  Aligned_cols=166  Identities=30%  Similarity=0.533  Sum_probs=146.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      +..+||+++|.+|||||||+++|..+.+...+.++.+..+ ...+..++..+.+.+||++|+..+......+++.+|+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            3578999999999999999999999999888888876554 556677888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++++++.+..|+..+......   ++.|+++|+||+|+...  .....++...++....+.+|+++||++|.|+
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~---~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv  154 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINV  154 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCC---CCCeEEEEEEecCcccc--cccchhHHHHHHHHhCCCEEEEEcCCCCcCH
Confidence            999999999999999999988775432   37899999999999765  5677788888888876689999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|.+|++.+.
T Consensus       155 ~e~F~~l~~~i~  166 (167)
T d1c1ya_         155 NEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-35  Score=199.16  Aligned_cols=169  Identities=38%  Similarity=0.683  Sum_probs=147.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+|+|++|||||||++++.++.+...+.++.+...........+..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            56899999999999999999999999888888888888888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |+|++++.++..+..|+..+......    +.|+++|+||+|+...  +....++...++...+ .+|+++||++|.|++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~----~~piilv~nK~D~~~~--~~~~~~~~~~~a~~~~-~~~~e~Sa~tg~~V~  154 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSS----NMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACNVE  154 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCC----CCeEEEEecCCchhhh--hhhHHHHHHHHHHHcC-CEEEEecCCCCCCHH
Confidence            99999999999999999888765433    7899999999998754  5677788889988877 899999999999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 028654          167 AAFECIAKNALKNEPQ  182 (206)
Q Consensus       167 ~l~~~i~~~~~~~~~~  182 (206)
                      ++|.+|++.+.++.++
T Consensus       155 e~f~~i~~~i~~~~~~  170 (173)
T d2a5ja1         155 EAFINTAKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999998875543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=198.71  Aligned_cols=169  Identities=36%  Similarity=0.669  Sum_probs=145.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++.+||+|+|.+|||||||++++.++.+...+.++.+.......+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            35689999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||.++++++..+..|+..+......    +.|+++|+||+|+.+.  .....+....+....+ .+++++||++|.|+
T Consensus        82 ~v~d~~~~~S~~~~~~~~~~i~~~~~~----~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~i  154 (175)
T d2f9la1          82 LVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNV  154 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECCCcccchhHHHHHHHHHHhcCC----CCcEEEEEeeeccccc--ccchHHHHHHhhcccC-ceEEEEecCCCcCH
Confidence            999999999999999999988776543    7899999999999754  4455556666666655 89999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|+++++.+.+...
T Consensus       155 ~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         155 EEAFKNILTEIYRIVS  170 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998765443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-35  Score=200.74  Aligned_cols=166  Identities=27%  Similarity=0.418  Sum_probs=144.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|.+|+|||||+++|+++.+...+.+|.+..+ .....+++..+.+.+||++|++.+......+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            468999999999999999999999998888888876544 4556788889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||+++++++..+..|+..+......  ..+.|+++|+||+|+...  +++..++++.+++..+ ++++++||++|.|++
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piilVgnK~Dl~~~--~~v~~~e~~~~~~~~~-~~~~e~Sak~~~~v~  154 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK  154 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred             Eeecccccchhcccchhhhhhhhhcc--CCCCcEEEEeeccccccc--ccccHHHHHHHHHHcC-CeEEEEcCCCCcCHH
Confidence            99999999999999999888765432  237899999999998654  6678888999999887 899999999999999


Q ss_pred             HHHHHHHHHHhh
Q 028654          167 AAFECIAKNALK  178 (206)
Q Consensus       167 ~l~~~i~~~~~~  178 (206)
                      ++|..|++.+.+
T Consensus       155 e~f~~l~~~~~~  166 (171)
T d2erxa1         155 ELFQELLNLEKR  166 (171)
T ss_dssp             HHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHH
Confidence            999999986544

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-34  Score=198.86  Aligned_cols=171  Identities=78%  Similarity=1.250  Sum_probs=154.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+|+|.+|||||||+++|.++.+...+.++.+.++........+..+.+.+||++|...+...+..++..+|+++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            47999999999999999999999999988899998888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|.++..++..+..|+..+..........++|+++|+||+|+..   .....++...++......+++++||++|.|+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  158 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  158 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc---cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHH
Confidence            99999999999999999998887766666889999999999865   456777777787777669999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q 028654          168 AFECIAKNALKNEP  181 (206)
Q Consensus       168 l~~~i~~~~~~~~~  181 (206)
                      +|++|++.+.++..
T Consensus       159 ~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         159 AFQTIARNALKQET  172 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc
Confidence            99999998887543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=197.57  Aligned_cols=166  Identities=40%  Similarity=0.682  Sum_probs=150.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      -..+||+++|.+|+|||||+++|..+.+...+.++.+..+...........+.+.+||++|++.+...+..+++.+++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            35789999999999999999999999999888999988888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|.++.+++..+..|+..+......    +.|+++|+||+|+...  +.++.++.+.++...+ .+|+++||++|.|+
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilvgnK~Dl~~~--~~v~~e~~~~~~~~~~-~~~~e~SAk~g~~V  156 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMNV  156 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCC----CceEEeeccccccccc--ccccHHHHHHHHHhcC-CEEEEeeCCCCCCH
Confidence            999999999999999998888765443    7899999999999765  6788899999998877 89999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028654          166 EAAFECIAKNALK  178 (206)
Q Consensus       166 ~~l~~~i~~~~~~  178 (206)
                      +++|..|++.+.+
T Consensus       157 ~e~f~~l~~~i~~  169 (170)
T d1r2qa_         157 NEIFMAIAKKLPK  169 (170)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=195.12  Aligned_cols=165  Identities=32%  Similarity=0.569  Sum_probs=145.5

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++++||+++|.+|||||||+++|.++.+...+.++.+..+. ..+...+..+.+.+||++|++.+......+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            35699999999999999999999999988888888776554 44567888899999999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|.+++.+++.+..|+..+......   +++|+++|+||+|+..   +....++++.+++..+ .+++++||++|.|+
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~e~Sak~g~gi  152 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGV  152 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTC---SSCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCC---CCCeEEEEeccccccc---ccccHHHHHHHHHHhC-CeEEEEcCCCCcCH
Confidence            999999999999999999998876543   2689999999999865   5567788889998887 79999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 028654          166 EAAFECIAKNALK  178 (206)
Q Consensus       166 ~~l~~~i~~~~~~  178 (206)
                      +++|.+|++.+.+
T Consensus       153 ~e~f~~i~~~i~~  165 (166)
T d1ctqa_         153 EDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998865

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=198.26  Aligned_cols=166  Identities=41%  Similarity=0.718  Sum_probs=120.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +.+||+++|.++||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            56899999999999999999999998888888888888989999999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE  166 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  166 (206)
                      |||++++.++..+..|+..+......    +.|+++|+||.|+...  .....++...++...+ .+++++||++|.|++
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~gv~  157 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASA----DVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAKANINVE  157 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC---CCHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccC----CceEEEEEecccchhh--cccHHHHHHHHHHhcC-CEEEEEeCCCCCCHH
Confidence            99999999999999998888655443    7899999999998865  4566677777777776 899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 028654          167 AAFECIAKNALKN  179 (206)
Q Consensus       167 ~l~~~i~~~~~~~  179 (206)
                      ++|++|++.+.++
T Consensus       158 e~f~~l~~~i~~k  170 (173)
T d2fu5c1         158 NAFFTLARDIKAK  170 (173)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=197.06  Aligned_cols=165  Identities=33%  Similarity=0.544  Sum_probs=144.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++++||+++|.+|||||||+++|+++.+...+.++.+ +.......+++..+.+.+||++|++.+......+++.+|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            4579999999999999999999999998888777775 455667778899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++.++..+..|+..+......   ++.|+++|+||+|+...  +....++...++...+ .+++++||++|.|+
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sak~g~~i  153 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMV  153 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccC---CCCCEEEEEEccchhhc--ccchHHHHHHHHHHcC-CeEEEECCCCCcCH
Confidence            999999999999999999888765432   37899999999998754  5567788888888877 78999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|+.|++.+.
T Consensus       154 ~e~f~~i~~~i~  165 (167)
T d1kaoa_         154 DELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=195.38  Aligned_cols=169  Identities=25%  Similarity=0.424  Sum_probs=142.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+|+|.+|||||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+......+++.+|++++
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            468999999999999999999999999888888875 4455667788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC----------cceecHHHHHHHHHHcCCCcEEE
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      |||++++++++.+..|+.........    +.|+++|+||+|+....          .......+...+++..+..+|++
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~----~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E  158 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  158 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCC----CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEE
Confidence            99999999999986644444433322    78999999999986431          13345667778888888789999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      |||++|.|++++|+.|++.++..+
T Consensus       159 ~SAk~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         159 CSALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred             cCCCCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999999998653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-34  Score=192.67  Aligned_cols=164  Identities=39%  Similarity=0.707  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +|.+++.+++.+..|...+......    ..|++++++|.|+..   .....++...++...+ ++++++||++|.|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~i~~~~k~d~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~e  153 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHAND----EAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVNE  153 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccC----cceeeeecchhhhhh---hhhhHHHHHHHHHhcC-CeEEEECCCCCCCHHH
Confidence            9999999999998888877766543    668999999999865   4566788888888887 8999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 028654          168 AFECIAKNALKN  179 (206)
Q Consensus       168 l~~~i~~~~~~~  179 (206)
                      +|++|++.+.++
T Consensus       154 ~f~~l~~~i~~k  165 (166)
T d1g16a_         154 IFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-33  Score=193.62  Aligned_cols=168  Identities=35%  Similarity=0.624  Sum_probs=150.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      -+.+||+|+|.+|+|||||+++|.++.+...+.++.+.......+.+.+..+.+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35789999999999999999999999998888888888888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|++++.++..+..|+..+......   ...|+++++||.|...   +.+..++...+++..+ .+++++||++|.|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~~i~~~~nk~d~~~---~~v~~~~~~~~~~~~~-~~~~e~Sa~tg~gv  157 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTR---NDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKTCDGV  157 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSC---SCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred             EEEECCCccccccchhhhhhhcccccc---cceeeEEEeecccccc---ccccHHHHHHHHHHCC-CEEEEEeCCCCCCH
Confidence            999999999999999998888654332   2678999999999764   5677888888888887 89999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 028654          166 EAAFECIAKNALKNE  180 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~  180 (206)
                      +++|++|++.+++.+
T Consensus       158 ~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         158 QCAFEELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHHHHccCc
Confidence            999999999998764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-34  Score=194.11  Aligned_cols=164  Identities=26%  Similarity=0.466  Sum_probs=139.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|+|||||++++..+.+...+.+|.+..+. .....++..+.+.+||++|++.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            589999999999999999999999998888888876654 444578888999999999988764 455678899999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCC-CHH
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVE  166 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~  166 (206)
                      ||+++++++..+..|..........   .+.|+++|+||+|+...  +.++.++++.+++..+ ++|+++||++|. +++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~Saktg~gnV~  153 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGNIT  153 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHH
T ss_pred             cccCCccchhhhhhhcccccccccc---cCcceeeeccchhhhhh--ccCcHHHHHHHHHHhC-CeEEEEccccCCcCHH
Confidence            9999999999998877665544332   27899999999999754  6788899999999887 899999999998 599


Q ss_pred             HHHHHHHHHHhhc
Q 028654          167 AAFECIAKNALKN  179 (206)
Q Consensus       167 ~l~~~i~~~~~~~  179 (206)
                      ++|..|++.+.++
T Consensus       154 e~F~~l~~~i~~~  166 (168)
T d2atva1         154 EIFYELCREVRRR  166 (168)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-33  Score=189.69  Aligned_cols=164  Identities=41%  Similarity=0.693  Sum_probs=137.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ..+||+++|++++|||||++++..+.+.. ...++.+.++....+...+..+.+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            46899999999999999999999988754 44555567788888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|+|.++++++..+..|+..+......    ..|+++|+||.|+...  ..+..+++..++...+ ++++++||++|.|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~iilv~~k~d~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gi  157 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQH----DVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGLNV  157 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCC----CceEEEEEeeechhhc--ccccHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence            999999999999998888877666543    6799999999998865  6777888889988887 89999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|++|++.+.
T Consensus       158 ~e~f~~l~~~i~  169 (170)
T d2g6ba1         158 DLAFTAIAKELK  169 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC
Confidence            999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-33  Score=192.65  Aligned_cols=166  Identities=37%  Similarity=0.638  Sum_probs=148.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|.+|+|||||+++|.++.+...+.++.+..+....+...+..+.+.+||++|++.+......++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999998889999888888889999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-CcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      |||.+++.++..+..|+..+......    ..|+++|+||+|+... ..+.+..++...+++..+ ++|+++||++|.|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~gV  156 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASK----DIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENV  156 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCT----TCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTH
T ss_pred             EEeCCcccchhhhhhhhhhhcccccc----ccceeeeecccccccccchhhhhHHHHHHHHHHcC-CEEEEecCCCCcCH
Confidence            99999999999999998877665443    6789999999998643 346778889999998887 79999999999999


Q ss_pred             HHHHHHHHHHHh
Q 028654          166 EAAFECIAKNAL  177 (206)
Q Consensus       166 ~~l~~~i~~~~~  177 (206)
                      +++|..|++.++
T Consensus       157 ~e~F~~i~~~i~  168 (170)
T d1ek0a_         157 NDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhc
Confidence            999999987654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=198.72  Aligned_cols=168  Identities=42%  Similarity=0.695  Sum_probs=144.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCC----------eEEEEEEeeCCCcccccccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED----------RLFTLQIWDTAGQERFQSLGVA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~D~~G~~~~~~~~~~   76 (206)
                      +.+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++          ..+.+.+|||+|++++...+..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            568999999999999999999999998888888887777666665533          3468999999999999999999


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEE
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE  156 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (206)
                      +++.+|++|+|||++++.+++.+..|+..+...   ......|+++|+||+|+...  +.+..+++..++...+ +++++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iilv~nK~Dl~~~--~~v~~~e~~~~~~~~~-~~~~e  157 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN---AYCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYFE  157 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCC---CTTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEE
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhh---ccCCCceEEEEeeeccchhh--hcchHHHHHHHHHHcC-CEEEE
Confidence            999999999999999999999998887765433   23446789999999999764  6788889999999887 79999


Q ss_pred             eeccCCCCHHHHHHHHHHHHhhcC
Q 028654          157 TSAKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       157 ~s~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      +||++|.|++++|++|++.+.++.
T Consensus       158 ~Sak~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         158 TSAATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999887653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.2e-33  Score=189.81  Aligned_cols=166  Identities=21%  Similarity=0.387  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      ..||+++|.+|||||||++++..+.+...+.++... .......+++..+.+.+||++|++.+......+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            479999999999999999999999998888887654 4455667788999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC----------CcceecHHHHHHHHHHcCCCcEEEe
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ||++++++++.+..|+.........    +.|+++|+||+|+...          ..+.+..++...+++..+..+|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~----~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~  156 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCP----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  156 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             eecccCCCHHHHHHHHHHHHhccCC----cceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEE
Confidence            9999999999987766555444332    7899999999998642          2355788899999999887899999


Q ss_pred             eccCCC-CHHHHHHHHHHHHhh
Q 028654          158 SAKEGF-NVEAAFECIAKNALK  178 (206)
Q Consensus       158 s~~~~~-~i~~l~~~i~~~~~~  178 (206)
                      ||++|. +++++|+.+.+.++.
T Consensus       157 SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         157 SALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCCcCHHHHHHHHHHHHhc
Confidence            999997 599999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-33  Score=189.08  Aligned_cols=166  Identities=23%  Similarity=0.370  Sum_probs=137.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCC---ccccccccccceecCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---QERFQSLGVAFYRGAD   82 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---~~~~~~~~~~~~~~~d   82 (206)
                      ..+||+++|.+|+|||||+++|.+..+. ....++++.+.....+.+++..+.+.+||+++   ++++  ....+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999999987654 34455666777788888999999999999875   4444  4566789999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      ++|+|||+++++++..+..|...+.....   .++.|+++|+||+|+...  +.+..++.+.++...+ ++|+++||++|
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sak~g  153 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQ  153 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTT
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccc---cCCceEEEEecccccccc--ccccHHHHHHHHHHcC-CeEEEEeCCCC
Confidence            99999999999999999999888765432   237899999999998764  6677888888988887 89999999999


Q ss_pred             CCHHHHHHHHHHHHhhcC
Q 028654          163 FNVEAAFECIAKNALKNE  180 (206)
Q Consensus       163 ~~i~~l~~~i~~~~~~~~  180 (206)
                      .|++++|..|++.+..++
T Consensus       154 ~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         154 HNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             BSHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHcc
Confidence            999999999999887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-32  Score=184.61  Aligned_cols=168  Identities=22%  Similarity=0.395  Sum_probs=139.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      .+.+||+++|.+|||||||++++.++.+... .++.+ ......+.+++..+.+.+|||+|+..+     .+++.+|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            4679999999999999999999999987543 34443 344667788999999999999997754     3678899999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCH
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV  165 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  165 (206)
                      +|||++++++++.+..|...+.... .....+.|+++|+||.|+.....+.+..++.+.++....+.+|+++||+++.|+
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~-~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLR-GEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-C--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHh-hcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            9999999999999999988876653 333457899999999998766667788888888887776689999999999999


Q ss_pred             HHHHHHHHHHHhhcCC
Q 028654          166 EAAFECIAKNALKNEP  181 (206)
Q Consensus       166 ~~l~~~i~~~~~~~~~  181 (206)
                      +++|..+++.+.+...
T Consensus       155 ~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         155 DRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999998876543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3e-32  Score=185.09  Aligned_cols=160  Identities=38%  Similarity=0.672  Sum_probs=140.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-ccccceecCcEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL   86 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~vi~   86 (206)
                      .+||+++|.+|||||||+++|..+.+...+.++.+.........+......+.+||++|...... .+..+++.+|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999988888888888888888999999999999999776654 45678899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccC---CC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE---GF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~  163 (206)
                      |||++++++++.+..|+..+......   ++.|+++|+||+|+.+.  +.+..++++.+++..+ .+++++||++   +.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~pi~lvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAkt~~~~~  155 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPNDND  155 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGGGS
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccC---CCCeEEEEeccccchhc--cchhHHHHHHHHHHCC-CEEEEEecccCCcCc
Confidence            99999999999999999998776543   37899999999999765  5688899999998887 7999999986   56


Q ss_pred             CHHHHHHHHH
Q 028654          164 NVEAAFECIA  173 (206)
Q Consensus       164 ~i~~l~~~i~  173 (206)
                      |++++|.+|+
T Consensus       156 ~V~e~F~~lA  165 (165)
T d1z06a1         156 HVEAIFMTLA  165 (165)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHhC
Confidence            9999998873

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=6.5e-32  Score=183.18  Aligned_cols=159  Identities=22%  Similarity=0.390  Sum_probs=125.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      ++||+++|++|+|||||+++|.++.+...+.+|.+..+.  .+...+  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            689999999999999999999999888877777665443  344444  7899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH---HcCCCcEEEeeccCCCC
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---SKGNIPYFETSAKEGFN  164 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~  164 (206)
                      +|+++.+++.....|+..+.....   .+++|+++|+||.|+.+.....   +..+.+..   .....+++++||++|.|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~lv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~e~Sa~~g~g  151 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGALDEK---ELIEKMNLSAIQDREICCYSISCKEKDN  151 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCCCHH---HHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred             cccccccccchhhhhhhhhhhhhc---ccCCcEEEEEeccccchhhhHH---HHHHHHHHHHHHhCCCEEEEEeCcCCcC
Confidence            999999999988888777755432   3478999999999997642211   11222111   11246899999999999


Q ss_pred             HHHHHHHHHHHH
Q 028654          165 VEAAFECIAKNA  176 (206)
Q Consensus       165 i~~l~~~i~~~~  176 (206)
                      ++++|++|++.+
T Consensus       152 v~e~~~~l~~~~  163 (164)
T d1zd9a1         152 IDITLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcc
Confidence            999999998853

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.8e-31  Score=183.09  Aligned_cols=165  Identities=23%  Similarity=0.343  Sum_probs=122.9

Q ss_pred             cccceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCc
Q 028654            3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD   82 (206)
Q Consensus         3 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   82 (206)
                      +..+..+||+++|++|||||||+++|.++.+... .++.+  +....+...+  +.+.+||++|++.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhhccc
Confidence            3445689999999999999999999998876422 22322  3334444444  78899999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCC
Q 028654           83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG  162 (206)
Q Consensus        83 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  162 (206)
                      ++++|+|+++..++..+..|+..+.....   ..++|+++|+||+|+..........+.+..........+++++||++|
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~---~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  162 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEK---LSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTG  162 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGG---GTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhc---cCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence            99999999999999988877776654333   337899999999999865222111111111111122367999999999


Q ss_pred             CCHHHHHHHHHHH
Q 028654          163 FNVEAAFECIAKN  175 (206)
Q Consensus       163 ~~i~~l~~~i~~~  175 (206)
                      +|++++|+||++.
T Consensus       163 ~gv~e~~~~l~~~  175 (176)
T d1fzqa_         163 EGVQDGMNWVCKN  175 (176)
T ss_dssp             TTHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhc
Confidence            9999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=7.2e-31  Score=178.18  Aligned_cols=159  Identities=19%  Similarity=0.344  Sum_probs=121.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|++|||||||+++|.+..+. ...++.+  .....+...+  +.+.+||+||++.+...+..++..++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            589999999999999999999887653 4445544  3333444444  7889999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH--H--cCCCcEEEeeccCCC
Q 028654           88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--S--KGNIPYFETSAKEGF  163 (206)
Q Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~s~~~~~  163 (206)
                      +|+++..++.....++.......   ...+.|+++|+||+|+.+..    ..++......  .  ....+++++||++|.
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  149 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVTGE  149 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eecccchhHHHHHHhhhhhhhhc---ccCCCceEEEEecccccccc----CHHHHHHHHHhhhhhcCCCEEEEEECCCCC
Confidence            99999989888766665554322   22378999999999997542    2222222211  1  123678999999999


Q ss_pred             CHHHHHHHHHHHHhh
Q 028654          164 NVEAAFECIAKNALK  178 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~  178 (206)
                      |++++|++|++.+..
T Consensus       150 gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         150 DLLPGIDWLLDDISS  164 (165)
T ss_dssp             THHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHc
Confidence            999999999998765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=6e-31  Score=181.35  Aligned_cols=163  Identities=18%  Similarity=0.325  Sum_probs=120.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEE
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC   84 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~v   84 (206)
                      +.+.+||+++|.+|||||||+++|....+. ...++.+...  ......+  +.+.+||+||++.+...+..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEE--EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            456899999999999999999999877653 2334444333  3333343  7889999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----HcCCCcEEEeecc
Q 028654           85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAK  160 (206)
Q Consensus        85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~  160 (206)
                      ++|+|+++..++.....|+.......   ...+.|+++|+||+|+.+..    ..+++.....    ....+++++|||+
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~---~~~~~piliv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~e~SA~  161 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGAL----SASEVSKELNLVELKDRSWSIVASSAI  161 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             EEEeeecccccchhHHHHHHHHHHhh---ccCCcceEEEEEeecccccc----CHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence            99999999999988887776654332   33478999999999997542    2233222111    1123679999999


Q ss_pred             CCCCHHHHHHHHHHHHhhc
Q 028654          161 EGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~  179 (206)
                      +|+|++++|++|++.+.++
T Consensus       162 ~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         162 KGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             GTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHc
Confidence            9999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=6.3e-30  Score=174.76  Aligned_cols=160  Identities=16%  Similarity=0.281  Sum_probs=119.1

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ...+||+++|++|||||||+++|....+.. ..++.+..  .......  .+.+.+||+||+..++..+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFN--VETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEE--EEEEEET--TEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeee--EEEeecc--ceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            347899999999999999999998876532 23333332  2333333  378899999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH---cCCCcEEEeeccCC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEG  162 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~  162 (206)
                      +|+|+++.+++..+..|+.......   ...+.|+++|+||+|+.+....   .+....+...   ...+.++++||++|
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~---~~~~~piiiv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~e~SA~tg  158 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAMKP---HEIQEKLGLTRIRDRNWYVQPSCATSG  158 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEecccchhHHHHHHHHHHHhhhc---ccccceeeeeeecccccccccH---HHHHHHHHHHHHHhCCCEEEEeeCCCC
Confidence            9999999999998887777665432   2237899999999999764221   1111211111   12367899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 028654          163 FNVEAAFECIAKNA  176 (206)
Q Consensus       163 ~~i~~l~~~i~~~~  176 (206)
                      +|++++|++|.+.+
T Consensus       159 ~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         159 DGLYEGLTWLTSNY  172 (173)
T ss_dssp             BTHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHhc
Confidence            99999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=165.47  Aligned_cols=159  Identities=14%  Similarity=0.247  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEE
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   88 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~   88 (206)
                      +||+++|++|||||||+++|.++.+..........     ........+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988765443333211     1223345578999999999999888999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce-ecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654           89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV-VSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus        89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      |.+++.++..+..|+..+.....   ....|+++++||.|+....... +..+....++... ..+++++||++|+|+++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~SAktg~gi~e  151 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR-NWYIQATCATSGDGLYE  151 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSC-CEEEEECBTTTTBTHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhc---ccCceEEEEeecccccccccHHHHHHHHHHHHHhhC-CCEEEEeECCCCCCHHH
Confidence            99999999888777777654332   2367999999999987642211 1111111122222 47899999999999999


Q ss_pred             HHHHHHHHH
Q 028654          168 AFECIAKNA  176 (206)
Q Consensus       168 l~~~i~~~~  176 (206)
                      +|++|.+++
T Consensus       152 ~~~~l~~~l  160 (160)
T d1r8sa_         152 GLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.3e-27  Score=163.92  Aligned_cols=164  Identities=16%  Similarity=0.077  Sum_probs=114.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc--------cccccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAF   77 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~   77 (206)
                      +.-.|+|+|.+|+|||||+|+|++.... ....+.++...........+  ..+.+|||||.....        .....+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            3447999999999999999999987643 23334444444444444444  578899999953322        223345


Q ss_pred             eecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEe
Q 028654           78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET  157 (206)
Q Consensus        78 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (206)
                      ++.+|++++|+|++++..... ..|...+.....     +.|+++|+||+|+...     ..+....+....+...++++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~-----~~piilv~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~i  150 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPED-ELVARALKPLVG-----KVPILLVGNKLDAAKY-----PEEAMKAYHELLPEAEPRML  150 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTT-----TSCEEEEEECGGGCSS-----HHHHHHHHHHTSTTSEEEEC
T ss_pred             cccccceeeeechhhhhcccc-cchhhheecccc-----chhhhhhhcccccccC-----HHHHHHHHHhhcccCceEEE
Confidence            678999999999987644332 333344433222     6799999999999653     22344555555666789999


Q ss_pred             eccCCCCHHHHHHHHHHHHhhcCCCC
Q 028654          158 SAKEGFNVEAAFECIAKNALKNEPQE  183 (206)
Q Consensus       158 s~~~~~~i~~l~~~i~~~~~~~~~~~  183 (206)
                      ||+++.|+++|+++|.+.+++.++..
T Consensus       151 SA~~~~gi~~L~~~i~~~lpe~p~~~  176 (178)
T d1wf3a1         151 SALDERQVAELKADLLALMPEGPFFY  176 (178)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred             ecCCCCCHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999887765543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=158.38  Aligned_cols=159  Identities=19%  Similarity=0.279  Sum_probs=113.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      .+.+||+|+|.+|||||||++++.+..+.... ++.+..  .......  ...+.+||+++.+.........+..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN--VEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSS--CEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-ccccee--EEEEeec--ceEEEEeccccccccccchhhhhccceeee
Confidence            45689999999999999999999998765322 222221  2222223  368899999999999998999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----HcCCCcEEEeeccC
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKE  161 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~  161 (206)
                      +++|.++..++.....+........   ...+.|+++|+||+|+.....    .+++.....    .....+++++||++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~Sa~t  160 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANKQDVKECMT----VAEISQFLKLTSIKDHQWHIQACCALT  160 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSG---GGTTCEEEEEEECTTSTTCCC----HHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             eecccccccchhhhhhhhhhhhhcc---cccceEEEEEEEcccccccCc----HHHHHHHHHHHhhHhcCCEEEEEeCCC
Confidence            9999999988877655544443322   223789999999999976532    222222221    22346899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 028654          162 GFNVEAAFECIAKNA  176 (206)
Q Consensus       162 ~~~i~~l~~~i~~~~  176 (206)
                      |+|+++++++|.+++
T Consensus       161 g~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         161 GEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TBTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.7e-25  Score=152.47  Aligned_cols=161  Identities=16%  Similarity=0.045  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-------cccccceecCc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD   82 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d   82 (206)
                      .|+++|.+|||||||+|+|++...........+......... ......+.+|||||.....       ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE-VSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE-CSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceee-ecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            589999999999999999998765433333433433333322 2233468899999943211       11223456789


Q ss_pred             EEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeecc
Q 028654           83 CCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK  160 (206)
Q Consensus        83 ~vi~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  160 (206)
                      ++++++|....  ........|+........     ++|+++|+||+|+...    ...+......... +.+++++||+
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~-~~~~~~iSA~  151 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALL-----RRPSLVALNKVDLLEE----EAVKALADALARE-GLAVLPVSAL  151 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHH-----HSCEEEEEECCTTSCH----HHHHHHHHHHHTT-TSCEEECCTT
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccc-----hhhhhhhhhhhhhhhH----HHHHHHHHHHHhc-CCeEEEEEcC
Confidence            99999998753  233333334333222111     5699999999999753    2223333444443 4899999999


Q ss_pred             CCCCHHHHHHHHHHHHhhcCC
Q 028654          161 EGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       161 ~~~~i~~l~~~i~~~~~~~~~  181 (206)
                      +|.|+++|++.|.+.+...++
T Consensus       152 tg~gid~L~~~i~~~l~~~~~  172 (180)
T d1udxa2         152 TGAGLPALKEALHALVRSTPP  172 (180)
T ss_dssp             TCTTHHHHHHHHHHHHHTSCC
T ss_pred             CCCCHHHHHHHHHHHHhhcCC
Confidence            999999999999998866544

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=9.2e-25  Score=148.00  Aligned_cols=162  Identities=21%  Similarity=0.350  Sum_probs=118.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ..+||+++|.+|||||||++++.++.+... .++.+  .........+  ..+.+||.+|...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccc--eeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            358999999999999999999999886532 23322  2333333344  688899999999988888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH---HcCCCcEEEeeccCCC
Q 028654           87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---SKGNIPYFETSAKEGF  163 (206)
Q Consensus        87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~  163 (206)
                      ++|+.+..++.....+........   .....|+++++||.|+......   .+.......   .....+++++||++|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~iv~nk~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA~~g~  152 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEE---ELRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTSATKGT  152 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECCTTTCT
T ss_pred             hhhhhhcchhhhccchhhhhhhhh---ccccceEEEEEeeccccccccH---HHHHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence            999998888777665544443322   2236789999999999864221   222222211   1234789999999999


Q ss_pred             CHHHHHHHHHHHHhhc
Q 028654          164 NVEAAFECIAKNALKN  179 (206)
Q Consensus       164 ~i~~l~~~i~~~~~~~  179 (206)
                      |++++|++|++.+.++
T Consensus       153 gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         153 GLDEAMEWLVETLKSR  168 (169)
T ss_dssp             THHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999987654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.93  E-value=1.8e-25  Score=153.07  Aligned_cols=164  Identities=18%  Similarity=0.134  Sum_probs=108.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceee-------EEEEEEeCCeEEEEEEeeCCCccccccccccce
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF-------LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY   78 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~   78 (206)
                      .+.++|+++|++++|||||+|+|++...............       ....+...+  ..+.++|+||+.++.......+
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhh
Confidence            3467999999999999999999997543221111111111       111112222  5678999999999988888889


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc---CCCcEE
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---GNIPYF  155 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~  155 (206)
                      ..+|++++++|+++....+... .+..+...       ++|+++|+||+|+..........+..+.+....   .+.+++
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~~-------~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  152 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGE-HMLILDHF-------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  152 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH-HHHHHHHT-------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             hhccccccccccccccchhhhh-hhhhhhhc-------CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            9999999999999754433322 22222221       789999999999986432222223333333322   246899


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhhc
Q 028654          156 ETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ++||++|+|+++|++.|.+.+.+.
T Consensus       153 ~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             EEEccCCcCHHHHHHHHHhcCCcc
Confidence            999999999999999999988763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.9e-26  Score=152.18  Aligned_cols=151  Identities=23%  Similarity=0.323  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc--------cccccee
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR   79 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~   79 (206)
                      ++|+++|.+|||||||+|+|++.... ....++.+.......+...+  ..+.++|+||..+...        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987654 33344444444455555555  5778899999433221        1234567


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      .+|++++++|..+.........|...+... ..    +.|+++|+||+|+........          .....+++++||
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~----~~~iilv~NK~Dl~~~~~~~~----------~~~~~~~~~iSA  144 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARL-PA----KLPITVVRNKADITGETLGMS----------EVNGHALIRLSA  144 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHS-CT----TCCEEEEEECHHHHCCCCEEE----------EETTEEEEECCT
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhc-cc----ccceeeccchhhhhhhHHHHH----------HhCCCcEEEEEC
Confidence            899999999999877766655554444333 21    679999999999876432211          234478999999


Q ss_pred             cCCCCHHHHHHHHHHHH
Q 028654          160 KEGFNVEAAFECIAKNA  176 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~  176 (206)
                      +++.|+++|+++|.+.+
T Consensus       145 k~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHhhC
Confidence            99999999999998863

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.1e-24  Score=144.76  Aligned_cols=153  Identities=21%  Similarity=0.315  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD   89 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d   89 (206)
                      ||+++|++|+|||||+|+|.++.+. ...++.+...  ....+.  .....+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEECCT--TCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeE--EEeccC--CeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999999998764 3344443322  233333  3577899999999999899999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH-----------HcCCCcEEEee
Q 028654           90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-----------SKGNIPYFETS  158 (206)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s  158 (206)
                      .++...+.....|+.......   ...+.|+++++||.|+....    ..+++.....           ....+.++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~~k~d~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIA---ELKDVPFVILGNKIDAPNAV----SEAELRSALGLLNTTGSQRIEGQRPVEVFMCS  149 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCT---TTTTCCEEEEEECTTSSSCC----CHHHHHHHHTCSSCCC---CCSSCCEEEEEEB
T ss_pred             ccchhhhhhhhHHHHhhhhhh---ccCCceEEEEeccccccccC----CHHHHHHHhhhhhhhHHHhhcccCCCEEEEee
Confidence            999888887766666554333   33478999999999997542    2222222211           12235799999


Q ss_pred             ccCCCCHHHHHHHHHH
Q 028654          159 AKEGFNVEAAFECIAK  174 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~  174 (206)
                      |++|+|++++|+||.+
T Consensus       150 A~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         150 VVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             TTTTBSHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHhC
Confidence            9999999999999975

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=7.2e-24  Score=144.09  Aligned_cols=158  Identities=20%  Similarity=0.231  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc---------cccccccee
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFYR   79 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~   79 (206)
                      .|+++|++|+|||||+|+|++.... ....+..+.......+....  ..+.++|++|....         ......++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6899999999999999999986643 22233333333333343333  67889999993211         122234457


Q ss_pred             cCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeec
Q 028654           80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA  159 (206)
Q Consensus        80 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  159 (206)
                      .+|+++++.|.+....... ..+...+...       ++|+++|+||+|+...    ...+....+ ...+...++++||
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~-------~~pviiv~NK~Dl~~~----~~~~~~~~~-~~~~~~~~i~iSA  146 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS-------TVDTILVANKAENLRE----FEREVKPEL-YSLGFGEPIPVSA  146 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH-------TCCEEEEEESCCSHHH----HHHHTHHHH-GGGSSCSCEECBT
T ss_pred             cCcEEEEeecccccccccc-cccccccccc-------cccccccchhhhhhhh----hhhHHHHHH-HhcCCCCeEEEec
Confidence            8999999999886544332 3343444332       6799999999998632    222222222 2234467899999


Q ss_pred             cCCCCHHHHHHHHHHHHhhcCCC
Q 028654          160 KEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       160 ~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++|.|+++++++|.+.+.+....
T Consensus       147 k~g~gid~L~~~i~~~l~e~~~~  169 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEEKGLD  169 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCC
Confidence            99999999999999998876543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.91  E-value=4.7e-24  Score=147.92  Aligned_cols=167  Identities=16%  Similarity=0.169  Sum_probs=112.4

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCC---CCcccccceee--EEEEEE-------------------eCCeEEEE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADF--LTKEVQ-------------------FEDRLFTL   59 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~--~~~~~~-------------------~~~~~~~~   59 (206)
                      ++++.++|+++|+.++|||||+++|++....   .......+...  ......                   .......+
T Consensus         1 ~~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (195)
T d1kk1a3           1 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   80 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeE
Confidence            3677899999999999999999999874322   11112221111  111111                   01123568


Q ss_pred             EEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCC-cEEEEeeCCCCCCCCcceec
Q 028654           60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGNSRVVS  138 (206)
Q Consensus        60 ~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pviiv~nK~D~~~~~~~~~~  138 (206)
                      .++||||+..|...+...+..+|++++++|+.+........+.+..+...       ++ ++++++||+|+.+.......
T Consensus        81 ~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-------~~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          81 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-------GQKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-------TCCCEEEEEECGGGSCHHHHHHH
T ss_pred             eeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-------cCccceeeeecccchhhHHHHHH
Confidence            99999999999998888899999999999998753222222222222222       33 47889999999875333344


Q ss_pred             HHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      .+.+..+....  ..++++++||++|+|+++|++.|.+.++
T Consensus       154 ~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         154 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            44455555443  2478999999999999999999988654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=5.2e-24  Score=146.43  Aligned_cols=155  Identities=18%  Similarity=0.147  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc---------------ccccc
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------------FQSLG   74 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------~~~~~   74 (206)
                      .|+++|.+|+|||||+|+|++........+++|.+...  +...    .+.++||||...               +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~--~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc--cccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            68999999999999999999987765556655544332  2222    356899999311               11122


Q ss_pred             ccceecCcEEEEEEECCChhhHHHH----------HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHH
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNL----------NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA  144 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~  144 (206)
                      ...++.+|++++|+|+.........          ..++..+..       .+.|+++|+||+|+...  .....+....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-------~~~p~iiv~NK~D~~~~--~~~~~~~~~~  146 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-------LDIPTIVAVNKLDKIKN--VQEVINFLAE  146 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-------TTCCEEEEEECGGGCSC--HHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-------cCCCEEEEEeeeehhhh--HHHHHHHHHH
Confidence            3345679999999998753221111          011222211       17799999999998753  2222222211


Q ss_pred             HHHH---cCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          145 WCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       145 ~~~~---~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ....   .....++++||++|.|+++|+++|.+.+.++
T Consensus       147 ~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e~  184 (184)
T d2cxxa1         147 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  184 (184)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             HhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccCC
Confidence            1110   0113589999999999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.5e-24  Score=142.76  Aligned_cols=148  Identities=24%  Similarity=0.269  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc---------cccccce
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---------SLGVAFY   78 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~   78 (206)
                      +||+++|.+|+|||||+|+|++.... ....++.+.......+...+  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            58999999999999999999976543 33344444444444555555  578899999932111         1122335


Q ss_pred             ecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654           79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus        79 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ..+|++++|+|++++.......-+ ..+    .     ..++++++||+|+....    ..+++...  .....+++++|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-~~~----~-----~~~~i~~~~k~d~~~~~----~~~~~~~~--~~~~~~~~~vS  142 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-ERI----K-----NKRYLVVINKVDVVEKI----NEEEIKNK--LGTDRHMVKIS  142 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HHH----T-----TSSEEEEEEECSSCCCC----CHHHHHHH--HTCSTTEEEEE
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-hhc----c-----cccceeeeeeccccchh----hhHHHHHH--hCCCCcEEEEE
Confidence            789999999999987665443222 111    1     56899999999998642    22222221  12347899999


Q ss_pred             ccCCCCHHHHHHHHHH
Q 028654          159 AKEGFNVEAAFECIAK  174 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~  174 (206)
                      |++|.|+++|+++|.+
T Consensus       143 A~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYR  158 (160)
T ss_dssp             GGGTCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999999999876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=3.7e-23  Score=142.11  Aligned_cols=159  Identities=17%  Similarity=0.270  Sum_probs=109.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV   85 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi   85 (206)
                      ++..||+++|++|||||||+++|.+..+... .++.+...  ..+.+.+  ..+.+||+.+...+...........++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4578999999999999999999998876532 33333332  2334444  46788999999988888889999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH----------------c
Q 028654           86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----------------K  149 (206)
Q Consensus        86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~----------------~  149 (206)
                      +++|.++...+.....+.......   ....+.|+++++||.|+...    ...+.+......                .
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~K~D~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKIDRPEA----ISEERLREMFGLYGQTTGKGSVSLKELNA  158 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEECTTSTTC----CCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred             eeeeccCccchHHHHHHHHHhhcc---cccCCCceEEEEeccCcccc----CCHHHHHHHHhhcccchhhhhhhHHHhhc
Confidence            999999988877765544443322   22337899999999998764    223333332221                1


Q ss_pred             CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          150 GNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       150 ~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      ....++++||++|+|++++|+||++.+
T Consensus       159 ~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         159 RPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            124689999999999999999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.90  E-value=5.4e-24  Score=150.82  Aligned_cols=163  Identities=21%  Similarity=0.194  Sum_probs=104.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEE----------------EeCCeEEEEEEeeCCCcccccccc
Q 028654           11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV----------------QFEDRLFTLQIWDTAGQERFQSLG   74 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~G~~~~~~~~   74 (206)
                      |+|+|++++|||||+++|++...........+........                .+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998643221111111111111111                112233578899999999999888


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee-----------------
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV-----------------  137 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-----------------  137 (206)
                      ...+..+|++|+|+|+.+.-..... ..+..+...       ++|+|+|+||+|+........                 
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~-------~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQTQ-EALNILRMY-------RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ  159 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHT-------TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred             hhcccccceEEEEEecccCcccchh-HHHHHhhcC-------CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHH
Confidence            8889999999999999874433332 222223221       789999999999876532111                 


Q ss_pred             -cHHHHHHHHHH-----------------cCCCcEEEeeccCCCCHHHHHHHHHHHHhhcCC
Q 028654          138 -SEKKAKAWCAS-----------------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP  181 (206)
Q Consensus       138 -~~~~~~~~~~~-----------------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~~~  181 (206)
                       ..+........                 ....+++++||.+|.|+++|++.|...+.+.-.
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence             01111111110                 112478999999999999999999887655433

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6e-23  Score=141.31  Aligned_cols=159  Identities=22%  Similarity=0.173  Sum_probs=102.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc------------ccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------------SLG   74 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------------~~~   74 (206)
                      .+||+++|.+|+|||||+|+|++.... ....+.++.......+...+  ..+.++|+||.....            ...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchhHHH
Confidence            589999999999999999999987643 22223333333334445555  467888999943222            222


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHH----HcC
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKG  150 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~  150 (206)
                      ...++.+|++++|+|++....... ..+...+...       +.|+++|+||+|+....  ....++......    ...
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~-------~~~~i~v~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~  155 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR-------GRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFID  155 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT-------TCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGGT
T ss_pred             HHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc-------CCceeeeccchhhhcch--hhhhhhHHHHHHHHhcccC
Confidence            334578999999999986543222 2333333221       67999999999987653  222333333222    234


Q ss_pred             CCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          151 NIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       151 ~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ..+++++||++|.|+++|+++|.+.+-.
T Consensus       156 ~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         156 YSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             TSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999999776543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=5.1e-24  Score=146.63  Aligned_cols=164  Identities=16%  Similarity=0.072  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc----c---cccceecC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----L---GVAFYRGA   81 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~   81 (206)
                      .+|+++|++|+|||||+|+|++........+..+.+.......+.+ ...+.+|||||......    .   ....+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            3689999999999999999998765543344444444344443332 23678999999532211    1   12234568


Q ss_pred             cEEEEEEECCChhhHHHH--HHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-CCCcEEEee
Q 028654           82 DCCVLVYDVNVMKSFDNL--NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIPYFETS  158 (206)
Q Consensus        82 d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s  158 (206)
                      +.++++++..........  ..+...... .......++|+++|+||+|+...      .+..+.+.... ...+++++|
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kp~ivv~NK~Dl~~~------~~~~~~~~~~~~~~~~v~~iS  153 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELS-EYNLRLTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPIS  153 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHH-HSCSSTTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCCS
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccc-hhhhhccCCcchhhccccchHhH------HHHHHHHHHHhccCCcEEEEE
Confidence            889888887653322221  111111112 22233336799999999999753      12333444433 357899999


Q ss_pred             ccCCCCHHHHHHHHHHHHhhcC
Q 028654          159 AKEGFNVEAAFECIAKNALKNE  180 (206)
Q Consensus       159 ~~~~~~i~~l~~~i~~~~~~~~  180 (206)
                      |++|.|+++|++.|.+.+.+.+
T Consensus       154 A~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         154 AVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             SCCSSTTHHHHHHHHHHHTSCC
T ss_pred             CCCCCCHHHHHHHHHHhhhhCC
Confidence            9999999999999999886544

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.3e-23  Score=144.32  Aligned_cols=163  Identities=16%  Similarity=0.198  Sum_probs=110.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      ++||+++|..|||||||+++|....++     +.+  .....+..  ....+.+||++|++.+...+..++..++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~--~~~~~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTG--IVETHFTF--KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC-----CCS--EEEEEEEE--TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC-----Ccc--EEEEEEEe--eeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            689999999999999999999876543     222  22223333  347889999999999999999999999999999


Q ss_pred             EECCChhhHHH-------HHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-------------CcceecHHHHHH-HH
Q 028654           88 YDVNVMKSFDN-------LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-------------NSRVVSEKKAKA-WC  146 (206)
Q Consensus        88 ~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-------------~~~~~~~~~~~~-~~  146 (206)
                      +|.++..++..       ...+...+..........+.|+++++||+|+...             .......++... +.
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            99988765421       1122222222223333447899999999995210             001111122111 11


Q ss_pred             ---HH------cCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          147 ---AS------KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       147 ---~~------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                         ..      ...+.+++|||+++.|++++|+.+.+.++++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence               11      1234577899999999999999999988764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=3.5e-23  Score=143.93  Aligned_cols=163  Identities=15%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      +++||+++|..|||||||+++|....+.  +.||.+....  .+.  ...+.+.+||++|++.+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~--~~~--~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY--PFD--LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE--EEE--CSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE--EEe--ccceeeeeccccccccccccccccccccceeeE
Confidence            3689999999999999999999887763  5677765543  223  344788999999999999999999999999999


Q ss_pred             EEECCChh-----------hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC--------------cceecHHH
Q 028654           87 VYDVNVMK-----------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------------SRVVSEKK  141 (206)
Q Consensus        87 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~--------------~~~~~~~~  141 (206)
                      ++|.++..           .++....|...+....    ..+.|+++++||.|+....              ......+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~----~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPW----FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  150 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG----GSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhh----ccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHH
Confidence            99998753           2344555665554333    2378999999999974210              11122222


Q ss_pred             HHHHHH----H-----cCCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          142 AKAWCA----S-----KGNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       142 ~~~~~~----~-----~~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                      ...+..    .     ...+.+++|||+++.|++++|+.|.+.+++.
T Consensus       151 ~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         151 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            222221    1     1124578999999999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.89  E-value=9.2e-23  Score=142.35  Aligned_cols=167  Identities=17%  Similarity=0.173  Sum_probs=107.2

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCc---ccc--cceeeEEEEEEe------------------------CCeE
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY---KAT--IGADFLTKEVQF------------------------EDRL   56 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~---~~~--~~~~~~~~~~~~------------------------~~~~   56 (206)
                      ++.++|+++|+.++|||||+++|++.......   ...  ............                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            45689999999999999999999863221000   000  000011111100                        0112


Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      ..+.++|+||+.+|...+...+..+|++|+|+|+.+.-........+..+.. ..     -.|++|++||+|+.+.....
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~-~~-----i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IG-----VKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TT-----CCCEEEEEECGGGSCHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHH-cC-----CceeeeccccCCCccchHHH
Confidence            4688999999999998888889999999999999874211111222222221 11     23789999999998753333


Q ss_pred             ecHHHHHHHHHHc--CCCcEEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ...+....+....  ..++++++||++|.|+++|++.|.+.+++
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence            3333344444332  25789999999999999999999987664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.89  E-value=7.1e-23  Score=141.98  Aligned_cols=156  Identities=19%  Similarity=0.151  Sum_probs=92.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC--CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc-------------ccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------------FQS   72 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~   72 (206)
                      ..+|+++|.+|+|||||+|+|++....  ....++.+.+..  ......   .+.+.|++|...             +..
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN--FYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEE--EEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecc--cccccc---cceEEEEEeeccccccccccchhhhHHh
Confidence            448999999999999999999986532  222222222222  222222   234456666211             111


Q ss_pred             ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCC
Q 028654           73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI  152 (206)
Q Consensus        73 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  152 (206)
                      .....+..++++++++|++++..... ..++..+...       ++|+++|+||+|+..........+.+.+........
T Consensus        98 ~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~-------~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY-------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             hhhccccchhhhhhhhhccccccccc-cccccccccc-------cCcceechhhccccCHHHHHHHHHHHHHHhcccCCC
Confidence            22233456799999999986533222 2333333321       679999999999875422222222233333333457


Q ss_pred             cEEEeeccCCCCHHHHHHHHHHHH
Q 028654          153 PYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       153 ~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      +++++||++|.|+++++++|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            899999999999999999998875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.9e-23  Score=144.45  Aligned_cols=165  Identities=15%  Similarity=0.198  Sum_probs=106.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEEE
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV   87 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v   87 (206)
                      .+||+++|.+|||||||+++|.   +...+.||.+...  ..+.+.  ...+.+||++|++.+...+..++..+++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~~--~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEeee--eeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   4456677776443  334444  47889999999999999999999999999999


Q ss_pred             EECCChhhH-------HHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC--------------CcceecHHHHHHHH
Q 028654           88 YDVNVMKSF-------DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--------------NSRVVSEKKAKAWC  146 (206)
Q Consensus        88 ~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~--------------~~~~~~~~~~~~~~  146 (206)
                      +|.++...+       .....+...+..........+.|+++++||+|+...              .......+...++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            999874332       122233333333333333448899999999997421              00111222222222


Q ss_pred             ----HHc------CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          147 ----ASK------GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       147 ----~~~------~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                          ...      ..+.+++|||+++.+++++|+.+.+.++++
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence                111      124466799999999999999998887664

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.88  E-value=1.5e-22  Score=139.50  Aligned_cols=162  Identities=17%  Similarity=0.088  Sum_probs=107.1

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC----------------CCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR----------------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF   70 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~   70 (206)
                      +.++|+++|+.++|||||+++|++.                ....+...+.+.+  .....+......+.++||||+.+|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~--~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN--AAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE--CEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCC--cceEEEEeceeeEEeecCcchHHH
Confidence            4589999999999999999999751                1112222333333  333334334467888999999999


Q ss_pred             ccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee-cHHHHHHHHHHc
Q 028654           71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV-SEKKAKAWCASK  149 (206)
Q Consensus        71 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~-~~~~~~~~~~~~  149 (206)
                      ...+...+..+|++++|+|+.+.-..+.. +.+..+... .     ..|+|+++||+|+........ ...++..+....
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~-~-----~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~  152 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQI-G-----VEHVVVYVNKADAVQDSEMVELVELEIRELLTEF  152 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHT-T-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHh-c-----CCcEEEEEecccccccHHHHHHHHHHHHHHHHHh
Confidence            99998999999999999999975433322 222222221 1     347899999999975422111 122344444443


Q ss_pred             C----CCcEEEeeccCC----------CCHHHHHHHHHHHHh
Q 028654          150 G----NIPYFETSAKEG----------FNVEAAFECIAKNAL  177 (206)
Q Consensus       150 ~----~~~~~~~s~~~~----------~~i~~l~~~i~~~~~  177 (206)
                      +    .++++++|+++|          .++.+|++.|.+.++
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            3    378999999988          478888887766543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=7.7e-22  Score=134.86  Aligned_cols=164  Identities=15%  Similarity=0.114  Sum_probs=108.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCCCC-cccccceeeEEEEEEeCCeEEEEEEeeCCCcc---------ccccccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGV   75 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~   75 (206)
                      .+.-.|+++|.+|+|||||+|+|++...... ...+++............  ..+..+|++|..         .......
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccc
Confidence            4555789999999999999999998765422 233333333233333333  355667888832         1222233


Q ss_pred             cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654           76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        76 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .....+++++++.|.......  ...+...+...       ..|.++|+||.|....  .....+..+.+....+..+++
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~~-------~~~~i~v~~k~d~~~~--~~~~~~~~~~~~~~~~~~~~~  149 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPD--DEMVLNKLREG-------KAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIV  149 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHH--HHHHHHHHHSS-------SSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEE
T ss_pred             cchhhcceeEEEEecCccchh--HHHHHHHhhhc-------cCceeeeeeeeeccch--hhhhhhHhhhhhhhcCCCCEE
Confidence            344568888999998753322  22232333211       5689999999998765  333445556666667778999


Q ss_pred             EeeccCCCCHHHHHHHHHHHHhhcCCC
Q 028654          156 ETSAKEGFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i~~~~~~~~~~  182 (206)
                      ++||++|.|+++|++.|.+.+++.++.
T Consensus       150 ~vSA~~g~gi~~L~~~i~~~lpe~~~~  176 (179)
T d1egaa1         150 PISAETGLNVDTIAAIVRKHLPEATHH  176 (179)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTCCBCCCS
T ss_pred             EEeCcCCCCHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999988776554

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.3e-21  Score=136.80  Aligned_cols=122  Identities=20%  Similarity=0.299  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccc-cccccceecCcEEEEEE
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVLVY   88 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~vi~v~   88 (206)
                      +|+++|++|||||||+++|.++.+... .++.+.......+ .......+.+||++|++.+. ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999999999999877654 3444444333222 23455789999999998775 45667778999999999


Q ss_pred             ECCChhh-HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc
Q 028654           89 DVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS  134 (206)
Q Consensus        89 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~  134 (206)
                      |+++... +.....++..+....... ..+.|++||+||+|+..+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~-~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMAL-KNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTS-TTCCEEEEEEECTTSTTCCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHh-hcCCcEEEEEECcccCCCCC
Confidence            9998655 344444544443322111 12679999999999986543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2.7e-21  Score=134.31  Aligned_cols=145  Identities=16%  Similarity=0.074  Sum_probs=96.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC--------C---------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRK--------F---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      +.++|+++|+.++|||||+++|+...        .         ..+.....+.+.....+...+  ..+.|+||||+.+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            46899999999999999999996320        0         111222344444445555555  5677899999999


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCCCCCcc-eecHHHHHHHHH
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCA  147 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~~~~~~~  147 (206)
                      |...+...+..+|++|+|+|+.+.-..+....|.. +...       ++| +++++||+|+.+.... ....+++..+..
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~~-------gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~  151 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN  151 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHHc-------CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988655544333322 2221       555 7788999999764211 112233444444


Q ss_pred             Hc----CCCcEEEeeccC
Q 028654          148 SK----GNIPYFETSAKE  161 (206)
Q Consensus       148 ~~----~~~~~~~~s~~~  161 (206)
                      ..    ...++++.|+..
T Consensus       152 ~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         152 QYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HTTSCTTTSCEEECCHHH
T ss_pred             hcCCCcccceeeeeechh
Confidence            32    236789888763

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.83  E-value=4.4e-20  Score=129.39  Aligned_cols=154  Identities=18%  Similarity=0.197  Sum_probs=99.5

Q ss_pred             ccceeeEEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CCcccccceeeEEEEE
Q 028654            4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFS---------------------------------NQYKATIGADFLTKEV   50 (206)
Q Consensus         4 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~   50 (206)
                      .+...++|+++|+.++|||||+++|+.....                                 .....+.+........
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            4556889999999999999999999642110                                 0001111122222222


Q ss_pred             EeCCeEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCC
Q 028654           51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDV  129 (206)
Q Consensus        51 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~  129 (206)
                      ...  ...+.++|+||+..|...+...+..+|++++|+|+.+....+....+ . +....      +++ +++++||+|+
T Consensus        85 ~~~--~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~-~~~~~------gv~~iiv~vNK~D~  154 (222)
T d1zunb3          85 STA--KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-Y-IASLL------GIKHIVVAINKMDL  154 (222)
T ss_dssp             ECS--SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-H-HHHHT------TCCEEEEEEECTTT
T ss_pred             ecc--ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-H-HHHHc------CCCEEEEEEEcccc
Confidence            223  35788999999999999999999999999999999875443332222 1 22221      544 8899999999


Q ss_pred             CCCCcce--ecHHHHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654          130 DGGNSRV--VSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       130 ~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (206)
                      .+.....  ...+++..+....+    .++++++||++|.|+.+
T Consensus       155 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         155 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             ccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            8753221  12223444544442    35789999999998844

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=1e-20  Score=133.32  Aligned_cols=165  Identities=14%  Similarity=0.132  Sum_probs=112.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccceecCcEEEE
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL   86 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~   86 (206)
                      ...||+++|..|||||||++++....+    .||.|.  ....+.+.+  +.+.+||++|+..++..+..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999976543    456553  334455555  788999999999999999999999999999


Q ss_pred             EEECCChhh-------HHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCc-------------------------
Q 028654           87 VYDVNVMKS-------FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-------------------------  134 (206)
Q Consensus        87 v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~-------------------------  134 (206)
                      ++|.++...       ...+..+...+...+......+.|++|++||+|+....-                         
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            999986432       112233333444444444445889999999999743200                         


Q ss_pred             ---ceecHHHHHH-----HHHH---c----CCCcEEEeeccCCCCHHHHHHHHHHHHhhc
Q 028654          135 ---RVVSEKKAKA-----WCAS---K----GNIPYFETSAKEGFNVEAAFECIAKNALKN  179 (206)
Q Consensus       135 ---~~~~~~~~~~-----~~~~---~----~~~~~~~~s~~~~~~i~~l~~~i~~~~~~~  179 (206)
                         .....+....     +...   .    ..+.++.|||.++.+++.+|+.+.+.++++
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence               0011222222     2111   1    112356799999999999998887777654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=3.6e-20  Score=129.43  Aligned_cols=121  Identities=15%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccccccccccc----eecCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF----YRGAD   82 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~~~d   82 (206)
                      ++.+|+++|++|+|||||+|+|.+..+.    ++++.......+  ......+.+||+||+..+...+..+    +..++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAA--DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEET--TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEE--EeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            5679999999999999999999987653    333333333333  3333567899999988765554443    34568


Q ss_pred             EEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCC
Q 028654           83 CCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN  133 (206)
Q Consensus        83 ~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~  133 (206)
                      .+++++|+.+ ..++.....|+..+..........+.|+++|+||+|+....
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8999999764 55566666666554433333334488999999999998753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1.6e-18  Score=124.43  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=83.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC------------------CCCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      ..+|+++|+.++|||||+.+++....                  ..+.....+.......+.+.+  ..+.|+||||+.+
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~d   83 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHVD   83 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchhh
Confidence            45899999999999999999864211                  112222333444445555555  6788999999999


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      |.......+.-+|++|+|+|+.+.-..+...-| ......       ++|.++++||+|....
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~-------~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY-------KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT-------TCCEEEEEECTTSTTC
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc-------CCCEEEEEeccccccc
Confidence            999999999999999999999986554443344 323221       8899999999998664

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=7.1e-19  Score=120.60  Aligned_cols=164  Identities=16%  Similarity=0.053  Sum_probs=86.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc----------cc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LG   74 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~   74 (206)
                      ....++|+++|.+|+|||||+|+|.+...........+................+...+.++......          ..
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            45679999999999999999999988765432222222222222222222222222222222111100          01


Q ss_pred             ccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHc-CCCc
Q 028654           75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP  153 (206)
Q Consensus        75 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~  153 (206)
                      .......+.++.+.+......... ..+...+...       ..++++++||+|+..........+.+.+..... +..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS-------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT-------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhhhc-------cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            111233455666666665433322 2333333222       558999999999986533333333434333333 3468


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHH
Q 028654          154 YFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      ++++||++|.|+++|++.|.+.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999987654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=9.4e-19  Score=123.92  Aligned_cols=152  Identities=16%  Similarity=0.220  Sum_probs=100.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------CCCcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRK--F-----------------------------SNQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   54 (206)
                      ...++|+++|+.++|||||+.+|+...  .                             ..+...+.+.+.....+.+.+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            345899999999999999999986311  0                             012233444444444555554


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhh-------HHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-------FDNLNNWREEFLIQASPSDPENFP-FVVLGNK  126 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK  126 (206)
                        .++.|+||||+.+|...+...+..+|++|+|+|+.....       .+....| . +....      ++| +|+++||
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~-~~~~~------gv~~iiv~iNK  153 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-L-LAFTL------GVRQLIVAVNK  153 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-H-HHHHT------TCCEEEEEEEC
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-H-HHHHc------CCCeEEEEEEC
Confidence              688999999999999999999999999999999985321       1111222 1 11111      555 7889999


Q ss_pred             CCCCCCCcce--ecHHHHHHHHHHcC----CCcEEEeeccCCCCHHH
Q 028654          127 TDVDGGNSRV--VSEKKAKAWCASKG----NIPYFETSAKEGFNVEA  167 (206)
Q Consensus       127 ~D~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~  167 (206)
                      +|+.+.+...  ...+++..+....+    .++++++|+..|.|+-+
T Consensus       154 mD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         154 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            9998753221  12233444444332    36789999999988643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.76  E-value=1.5e-18  Score=123.42  Aligned_cols=156  Identities=15%  Similarity=0.117  Sum_probs=84.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CCcccccceeeEEEEEEeCC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFED   54 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (206)
                      .+.++|+++|+.++|||||+.+|+.....                               .......+.......+.+  
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~--   99 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--   99 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc--
Confidence            45679999999999999999999532110                               000111111111111222  


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCCCCCCc-EEEEeeCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD------NLNNWREEFLIQASPSDPENFP-FVVLGNKT  127 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~  127 (206)
                      ....+.++||||+..|...+...+..+|++++|+|+.+.....      .....+..+ ...      ++| +++++||+
T Consensus       100 ~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~-~~~------~i~~iiv~iNKm  172 (245)
T d1r5ba3         100 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQ------GINHLVVVINKM  172 (245)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHT------TCSSEEEEEECT
T ss_pred             ccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHH-HHc------CCCeEEEEEEcC
Confidence            2257889999999999999999999999999999998632110      111111111 111      444 78999999


Q ss_pred             CCCCCCcceecH----HHHHHHHHHc-C-----CCcEEEeeccCCCCHHHHHH
Q 028654          128 DVDGGNSRVVSE----KKAKAWCASK-G-----NIPYFETSAKEGFNVEAAFE  170 (206)
Q Consensus       128 D~~~~~~~~~~~----~~~~~~~~~~-~-----~~~~~~~s~~~~~~i~~l~~  170 (206)
                      |+......+...    +++..+.... +     .++++++||++|+|+.++++
T Consensus       173 D~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         173 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            997643222222    2233332322 1     25799999999999977544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.76  E-value=2.2e-17  Score=118.13  Aligned_cols=113  Identities=16%  Similarity=0.186  Sum_probs=82.5

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC------------------CCcccccceeeEEEEEEeCCeEEEEEEeeCCCccc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER   69 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~   69 (206)
                      ..+|+++|+.++|||||+.+|+.....                  .+.....+.......+.+.+  ..+.++||||+.+
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhh
Confidence            458999999999999999998632111                  01122234444455556666  5678999999999


Q ss_pred             cccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCC
Q 028654           70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD  130 (206)
Q Consensus        70 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~  130 (206)
                      |.......+.-+|++++|+|+.+.-.......|. .....       ++|.++++||+|..
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~-------~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL-------GLPRMVVVTKLDKG  132 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT-------TCCEEEEEECGGGC
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc-------cccccccccccccc
Confidence            9999999999999999999999765555444443 23222       78999999999974

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=2e-18  Score=121.54  Aligned_cols=153  Identities=15%  Similarity=0.165  Sum_probs=93.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCCcccccceeeEEEEEEeCCe
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFEDR   55 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   55 (206)
                      +.++|+++|+.++|||||+.+|+....                               ..+.....+.......+.  ..
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~--~~   79 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE--TK   79 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE--CS
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEe--cC
Confidence            468999999999999999999863110                               011112222222222233  33


Q ss_pred             EEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHH------HHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFD------NLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        56 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ...+.|+||||+..|...+...+.-+|++++|+|+.+.....      ...+.+. +.....     -.++|+++||+|+
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~~-----~~~iIv~iNK~D~  153 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTMG-----LDQLIVAVNKMDL  153 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHTT-----CTTCEEEEECGGG
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHH-HHHHhC-----CCceEEEEEcccC
Confidence            467889999999999999999999999999999998742111      1111111 111111     2358899999999


Q ss_pred             CCCCcceecHH----HHHHHHHHc----CCCcEEEeeccCCCCHHH
Q 028654          130 DGGNSRVVSEK----KAKAWCASK----GNIPYFETSAKEGFNVEA  167 (206)
Q Consensus       130 ~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~s~~~~~~i~~  167 (206)
                      ..........+    .+..+....    ...+++++||..|.|+.+
T Consensus       154 ~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         154 TEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            76433322222    233333332    246789999999998754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=6.2e-17  Score=119.52  Aligned_cols=120  Identities=18%  Similarity=0.152  Sum_probs=82.5

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCC----------------CCCcccccceeeEEEEEEe--------------CC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQF--------------ED   54 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------~~   54 (206)
                      .++..+|+++|+.++|||||+.+|+....                ..+.....+.......+.+              ++
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            34556799999999999999999963111                1122222233222222222              33


Q ss_pred             eEEEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        55 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ..+.+.++||||+.+|.......++-+|++++|+|+.+.-..+...-|.... ..       +.|+++++||+|....
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~-~~-------~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-GE-------RIKPVVVINKVDRALL  163 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-HT-------TCEEEEEEECHHHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHH-Hc-------CCCeEEEEECcccccc
Confidence            5678999999999999999999999999999999999865555443333322 21       7899999999997543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.5e-16  Score=119.50  Aligned_cols=160  Identities=14%  Similarity=0.156  Sum_probs=91.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCccc-----ccceeeEEEEEEeCCeEEEEEEeeCCCcccccccc-----cc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-----VA   76 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~   76 (206)
                      .+++|+|+|.+|+|||||+|+|.+.........     .++.+...  +... ....+.+|||||-.......     ..
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~--~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECS-SCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeee--eecc-CCCeEEEEeCCCcccccccHHHHHHHh
Confidence            479999999999999999999998654321111     11222222  2221 12257799999944322211     22


Q ss_pred             ceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC-----C----cceecHHHHHH---
Q 028654           77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----N----SRVVSEKKAKA---  144 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~-----~----~~~~~~~~~~~---  144 (206)
                      .+..+|.++++.|..-.+.-   ..+...+...       ++|+++|+||+|....     .    ......+.++.   
T Consensus       132 ~~~~~d~~l~~~~~~~~~~d---~~l~~~l~~~-------~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~  201 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKKND---IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV  201 (400)
T ss_dssp             TGGGCSEEEEEESSCCCHHH---HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCHHH---HHHHHHHHHc-------CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHH
Confidence            34568888888875432221   2233333332       7799999999995311     0    01111122221   


Q ss_pred             -HHHH--cCCCcEEEeeccCC--CCHHHHHHHHHHHHhhc
Q 028654          145 -WCAS--KGNIPYFETSAKEG--FNVEAAFECIAKNALKN  179 (206)
Q Consensus       145 -~~~~--~~~~~~~~~s~~~~--~~i~~l~~~i~~~~~~~  179 (206)
                       ....  ....+++.+|..+.  .|+.+|.+.+.+.+++.
T Consensus       202 ~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         202 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence             1121  22356788887653  48999999998877654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.63  E-value=3.7e-15  Score=106.67  Aligned_cols=124  Identities=15%  Similarity=0.092  Sum_probs=77.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCCCCC-CcccccceeeEEEEEEeCCeEEEEEEeeCCCcccccc-------ccc-
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGV-   75 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~-   75 (206)
                      ....++|+++|.+|+|||||+|.+++..... ...+..+...........+  ..+.++||||-.....       ... 
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            3467999999999999999999999876542 2333444445555555666  5788999999322111       111 


Q ss_pred             -cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654           76 -AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus        76 -~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                       ......|+++||++++...--......+..+...+...-  ..++++|.||.|...+
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~--~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI--WNKAIVALTHAQFSPP  162 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG--GGGEEEEEECCSCCCG
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh--hhCEEEEEECcccCCc
Confidence             112457899999988753211122233333443332110  2379999999998764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.55  E-value=2.5e-15  Score=106.83  Aligned_cols=114  Identities=13%  Similarity=-0.037  Sum_probs=67.2

Q ss_pred             EEEEEeeCCCccccccccccce-----ecCcEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFY-----RGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD  128 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~-----~~~d~vi~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D  128 (206)
                      ..+.++|+||+...........     ...+.+++++|+..   +.................      ..|.++|+||+|
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~------~~~~ivvinK~D  168 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL------GATTIPALNKVD  168 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH------TSCEEEEECCGG
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh------CCCceeeeeccc
Confidence            3578899999776543332211     23568899999764   222222111111111121      668999999999


Q ss_pred             CCCCCcceecHH------------------------HHHHH-HHHcCCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          129 VDGGNSRVVSEK------------------------KAKAW-CASKGNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       129 ~~~~~~~~~~~~------------------------~~~~~-~~~~~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      +..........+                        .+... ......++++++||++|+|+++|++.|.+.+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         169 LLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            986422111000                        00001 1123457899999999999999999998753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.6e-13  Score=100.89  Aligned_cols=104  Identities=14%  Similarity=0.105  Sum_probs=60.8

Q ss_pred             EEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCccee
Q 028654           58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV  137 (206)
Q Consensus        58 ~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~  137 (206)
                      .+.|++|.|......   .+...+|.+++|.++...+..+.+..-+.++            +-++|+||+|+........
T Consensus       148 d~iliEtvG~gq~e~---~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~------------aDi~VvNKaD~~~~~~~~~  212 (327)
T d2p67a1         148 DVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGLMEV------------ADLIVINKDDGDNHTNVAI  212 (327)
T ss_dssp             SEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHHHHH------------CSEEEECCCCTTCHHHHHH
T ss_pred             CeEEEeeccccccch---hhhhccceEEEEecCCCchhhhhhchhhhcc------------ccEEEEEeecccchHHHHH
Confidence            355666666332211   2345689999999887655544433322222            3488999999876532222


Q ss_pred             cHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHHHH
Q 028654          138 SEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNA  176 (206)
Q Consensus       138 ~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~l~~~i~~~~  176 (206)
                      ..++........      ...+++.+||.+|.|+++|++.|.+..
T Consensus       213 ~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         213 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            233333332211      125799999999999999999998754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=4.6e-13  Score=97.64  Aligned_cols=87  Identities=20%  Similarity=0.169  Sum_probs=62.4

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCC-CCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCccc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER   69 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~   69 (206)
                      .+.++|+++|.|+||||||+|++++... .....|++|.+.....+.+...               ...+.++|.||-..
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3568999999999999999999997654 3455677766665555554331               24688999999222


Q ss_pred             -------cccccccceecCcEEEEEEECCC
Q 028654           70 -------FQSLGVAFYRGADCCVLVYDVNV   92 (206)
Q Consensus        70 -------~~~~~~~~~~~~d~vi~v~d~~~   92 (206)
                             .......-++.+|++++|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                   22233445678999999999865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.43  E-value=6.6e-13  Score=95.96  Aligned_cols=85  Identities=25%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEEeCCe---------------EEEEEEeeCCCc----
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQ----   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~----   67 (206)
                      +.++|++||.|+||||||+|++++........|++|.+.....+.+.+.               ...+.++|.||-    
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            3579999999999999999999988776666677666655555544322               135889999992    


Q ss_pred             ---cccccccccceecCcEEEEEEECC
Q 028654           68 ---ERFQSLGVAFYRGADCCVLVYDVN   91 (206)
Q Consensus        68 ---~~~~~~~~~~~~~~d~vi~v~d~~   91 (206)
                         .........-++.+|+++.|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence               122333344567899999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.39  E-value=1.5e-12  Score=95.59  Aligned_cols=104  Identities=13%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcce
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV  136 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~  136 (206)
                      +.+.|+.|.|.......   ....+|.+++|..+...+..+.+..   .+.         ..+-++|+||+|+.+..  .
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~---gil---------E~aDi~vvNKaD~~~~~--~  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKK---GIF---------ELADMIAVNKADDGDGE--R  206 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCT---THH---------HHCSEEEEECCSTTCCH--H
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhh---hHh---------hhhheeeEeccccccch--H
Confidence            46778888885433222   2345899999999987655443221   111         22459999999987652  1


Q ss_pred             ecHHHHHHHHHH---------cCCCcEEEeeccCCCCHHHHHHHHHHHHh
Q 028654          137 VSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNAL  177 (206)
Q Consensus       137 ~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~l~~~i~~~~~  177 (206)
                      ...+....+...         ....+++.+|+.++.|+++++++|.+..-
T Consensus       207 ~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         207 RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            111111122111         12367999999999999999999987653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.8e-11  Score=89.21  Aligned_cols=118  Identities=16%  Similarity=0.240  Sum_probs=69.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEe----------CC----------------------
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQF----------ED----------------------   54 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~----------~~----------------------   54 (206)
                      ..+|+|+|..++|||||+|+|++.++. ....+++..........-          .+                      
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            458999999999999999999998863 333343322211111100          00                      


Q ss_pred             -----------------eEEEEEEeeCCCcccc-------------ccccccceecCc-EEEEEEECCChhhHHHHHHHH
Q 028654           55 -----------------RLFTLQIWDTAGQERF-------------QSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWR  103 (206)
Q Consensus        55 -----------------~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d-~vi~v~d~~~~~~~~~~~~~~  103 (206)
                                       ....+.++|+||-...             ......|+...+ ++++|.++....+......+.
T Consensus       106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~  185 (299)
T d2akab1         106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA  185 (299)
T ss_dssp             STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred             CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence                             0113789999993221             122344555666 455666665443333334444


Q ss_pred             HHHHHhcCCCCCCCCcEEEEeeCCCCCCC
Q 028654          104 EEFLIQASPSDPENFPFVVLGNKTDVDGG  132 (206)
Q Consensus       104 ~~~~~~~~~~~~~~~pviiv~nK~D~~~~  132 (206)
                      ..+    ...   ..++++|+||+|....
T Consensus       186 ~~~----~~~---~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         186 KEV----DPQ---GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHH----CTT---CSSEEEEEECGGGSCT
T ss_pred             HHh----CcC---CCceeeEEeccccccc
Confidence            443    221   4579999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=8.8e-12  Score=91.78  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCCcccccceeeEEEEEE----------------------eCCeEEEEEEeeCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ----------------------FEDRLFTLQIWDTAG   66 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~D~~G   66 (206)
                      .+|+++|.|+||||||+|+|++........|++|.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            3799999999999999999999876666666665543322211                      011235789999999


Q ss_pred             cc-------ccccccccceecCcEEEEEEECCC
Q 028654           67 QE-------RFQSLGVAFYRGADCCVLVYDVNV   92 (206)
Q Consensus        67 ~~-------~~~~~~~~~~~~~d~vi~v~d~~~   92 (206)
                      --       .........++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            32       122333344578999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.17  E-value=4.8e-11  Score=87.28  Aligned_cols=27  Identities=30%  Similarity=0.666  Sum_probs=24.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS   34 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~   34 (206)
                      ..+|+|+|..++|||||+|+|++..+.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            458999999999999999999998763

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=3.6e-09  Score=75.76  Aligned_cols=56  Identities=23%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCCCC-CCcccccceeeEEEEEEeCCeEEEEEEeeCCCc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ   67 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~   67 (206)
                      ..++|+|+|.||||||||+|+|.+.... ....|++|.+..  .+..+.   .+.++||||.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC---CeEEecCCCc
Confidence            5789999999999999999999987653 444555444332  222332   4788999993

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=2.9e-07  Score=63.19  Aligned_cols=85  Identities=22%  Similarity=0.211  Sum_probs=61.1

Q ss_pred             ceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHH-cCCCcE
Q 028654           77 FYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-KGNIPY  154 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~  154 (206)
                      .+.+.|.+++|+++.+|+ +...+.+|+......       +++.+||+||+|+.+.    ...+....+... ...+++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~-------~i~pvIvlnK~DL~~~----~~~~~~~~~~~~~~~~~~v   75 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN-------ELETVMVINKMDLYDE----DDLRKVRELEEIYSGLYPI   75 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT-------TCEEEEEECCGGGCCH----HHHHHHHHHHHHHTTTSCE
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEeCcccCCH----HHHHHHHHhhcccccceeE
Confidence            457899999999988754 345567776655443       7899999999999753    222333333332 233789


Q ss_pred             EEeeccCCCCHHHHHHHH
Q 028654          155 FETSAKEGFNVEAAFECI  172 (206)
Q Consensus       155 ~~~s~~~~~~i~~l~~~i  172 (206)
                      +.+|++++.|++++...+
T Consensus        76 ~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          76 VKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             EECCTTTCTTHHHHHHHH
T ss_pred             EEeccccchhHhhHHHHh
Confidence            999999999999988766

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=7.8e-08  Score=66.04  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..+++|.+|+|||||+|+|.+..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchh
Confidence            56899999999999999998653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=8.6e-08  Score=66.05  Aligned_cols=88  Identities=14%  Similarity=0.037  Sum_probs=60.2

Q ss_pred             ceecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCcEE
Q 028654           77 FYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF  155 (206)
Q Consensus        77 ~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (206)
                      .+.+.|.+++|+++.++. +...+.+++......       +++.+||+||+|+.++.......+.........+ ++++
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~-------~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g-~~v~   78 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN-------DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-YDVY   78 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT-------TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-CCEE
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc-------CCCEEEEEecccccccHHHHHHHHHHHHHHhhcc-ccce
Confidence            457899999999988754 455567766655432       7899999999999864211111222223333445 8999


Q ss_pred             EeeccCCCCHHHHHHHH
Q 028654          156 ETSAKEGFNVEAAFECI  172 (206)
Q Consensus       156 ~~s~~~~~~i~~l~~~i  172 (206)
                      .+|++++.|++++..++
T Consensus        79 ~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          79 LTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ECCHHHHTTCTTTGGGG
T ss_pred             eeecCChhHHHHHHHhh
Confidence            99999999998876544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=2.7e-07  Score=62.99  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ...+.-|+++|++|+||||.+-+|..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567789999999999999877753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=1.2e-07  Score=67.61  Aligned_cols=90  Identities=17%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             cccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCCCCCCcceecHHHHHHHHHHcCCCc
Q 028654           74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP  153 (206)
Q Consensus        74 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  153 (206)
                      ....++.+|++++|+|+.++.+...  ..+..   ...     ++|+|+|+||+|+.+.   . ..+....+....+ ..
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~---~~~-----~Kp~IlVlNK~DLv~~---~-~~~~w~~~f~~~~-~~   73 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIED---ILK-----NKPRIMLLNKADKADA---A-VTQQWKEHFENQG-IR   73 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHH---HCS-----SSCEEEEEECGGGSCH---H-HHHHHHHHHHTTT-CC
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHH---HHc-----CCCeEEEEECccCCch---H-HHHHHHHHHHhcC-Cc
Confidence            4456889999999999988765443  12222   222     6799999999999863   1 2222223333333 67


Q ss_pred             EEEeeccCCCCHHHHHHHHHHHHhh
Q 028654          154 YFETSAKEGFNVEAAFECIAKNALK  178 (206)
Q Consensus       154 ~~~~s~~~~~~i~~l~~~i~~~~~~  178 (206)
                      ++.+|+.++.+...+...+.+.+.+
T Consensus        74 ~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          74 SLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cceeecccCCCccccchhhhhhhhh
Confidence            8999999999988877777665544

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.39  E-value=3e-07  Score=62.50  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=50.0

Q ss_pred             EEEEEeeCCCccccccc----cccc---e-----ecCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654           57 FTLQIWDTAGQERFQSL----GVAF---Y-----RGADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~----~~~~---~-----~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  123 (206)
                      ..+.|+||+|.......    +...   .     ...+-+++|+|++. .+....+..++..+          + +--++
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  157 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV----------G-LTGVI  157 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH----------C-CSEEE
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc----------C-CceEE
Confidence            46789999994333221    1111   1     13567899999875 33444444444433          2 23578


Q ss_pred             eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHHH
Q 028654          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA  168 (206)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~l  168 (206)
                      +||.|-....      -.+-.+....+ .|+..++  +|++++++
T Consensus       158 ~TKlDet~~~------G~~l~~~~~~~-~Pi~~i~--~Gq~p~Dl  193 (207)
T d1okkd2         158 VTKLDGTAKG------GVLIPIVRTLK-VPIKFVG--VGEGPDDL  193 (207)
T ss_dssp             EECTTSSCCC------TTHHHHHHHHC-CCEEEEE--CSSSTTCE
T ss_pred             EeccCCCCCc------cHHHHHHHHHC-CCEEEEe--CCCChHhC
Confidence            9999975432      12223334444 6666666  34445443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.32  E-value=6.7e-08  Score=66.59  Aligned_cols=23  Identities=39%  Similarity=0.614  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ..+++|++|+|||||+|+|.+..
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             eEEEECCCCccHHHHHHhhccHh
Confidence            45789999999999999998753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=1.2e-06  Score=59.54  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=49.5

Q ss_pred             EEEEEeeCCCcccccc----cccc---cee-----cCcEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 028654           57 FTLQIWDTAGQERFQS----LGVA---FYR-----GADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVL  123 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~----~~~~---~~~-----~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~pviiv  123 (206)
                      ..+.|+||+|......    .+..   .++     ..+-+++|+|++. .+....+..++..+          + +--++
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~----------~-~~~lI  160 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV----------G-LTGIT  160 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS----------C-CCEEE
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc----------C-CceEE
Confidence            4678999999322221    1111   111     2468899999875 33333333333322          1 34678


Q ss_pred             eeCCCCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654          124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus       124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      +||.|-...      .-.+-......+ .|+..++  .|+++++
T Consensus       161 lTKlDe~~~------~G~~l~~~~~~~-~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         161 LTKLDGTAK------GGVIFSVADQFG-IPIRYIG--VGERIED  195 (211)
T ss_dssp             EECCTTCTT------TTHHHHHHHHHC-CCEEEEE--CSSSGGG
T ss_pred             EeecCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence            999997543      223333444444 7777777  5665543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.25  E-value=3.2e-06  Score=57.48  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             EEEEEeeCCCcccccc------ccccc--eecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCC
Q 028654           57 FTLQIWDTAGQERFQS------LGVAF--YRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKT  127 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~------~~~~~--~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~  127 (206)
                      ..+.|+||+|...+..      .+...  .-..+-+++|+|++... ....+..++..    .      + +--+++||.
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~------~-~~~lI~TKl  163 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S------K-IGTIIITKM  163 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C------T-TEEEEEECT
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c------C-cceEEEecc
Confidence            4688999999533321      11111  12356789999987533 33333222221    1      2 234779999


Q ss_pred             CCCCCCcceecHHHHHHHHHHcCCCcEEEeeccCCCCHHH
Q 028654          128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA  167 (206)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  167 (206)
                      |....      .-.+-.+....+ .|+..++  .|+++++
T Consensus       164 Det~~------~G~~l~~~~~~~-lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         164 DGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE  194 (211)
T ss_dssp             TSCSC------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred             cCCCc------ccHHHHHHHHHC-cCEEEEe--CCCCccc
Confidence            96542      344444555555 7777777  4666544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=2.7e-05  Score=53.45  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -.+|.|.-|||||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            3568899999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.05  E-value=7e-06  Score=55.64  Aligned_cols=84  Identities=20%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             EEEEEeeCCCcccccccc----ccc--eecCcEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCCCCCcEEEEeeCCCC
Q 028654           57 FTLQIWDTAGQERFQSLG----VAF--YRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV  129 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~----~~~--~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~  129 (206)
                      ..+.++||+|........    ...  ....+-+++|.|+.... ....+..+..    ...       .-=+++||.|-
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~----~~~-------~~~~I~TKlDe  161 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDE----KVG-------VTGLVLTKLDG  161 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHH----HTC-------CCEEEEECGGG
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHh----hCC-------CCeeEEeecCc
Confidence            467899999933322211    111  23467889999987543 2222222222    222       23578999996


Q ss_pred             CCCCcceecHHHHHHHHHHcCCCcEEEee
Q 028654          130 DGGNSRVVSEKKAKAWCASKGNIPYFETS  158 (206)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  158 (206)
                      ...      .-.+-.+....+ .|+..++
T Consensus       162 ~~~------~G~~l~~~~~~~-~Pi~~i~  183 (207)
T d1ls1a2         162 DAR------GGAALSARHVTG-KPIYFAG  183 (207)
T ss_dssp             CSS------CHHHHHHHHHHC-CCEEEEC
T ss_pred             ccc------chHHHHHHHHHC-CCEEEEe
Confidence            432      223334444444 6666655

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.99  E-value=1.7e-06  Score=57.32  Aligned_cols=23  Identities=52%  Similarity=0.949  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            37999999999999999999874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=2.7e-06  Score=56.54  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+|+|.|++|||||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.82  E-value=5.4e-06  Score=54.45  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....+|++.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            44679999999999999999999764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.82  E-value=4.6e-06  Score=54.69  Aligned_cols=24  Identities=33%  Similarity=0.659  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+|+++|++||||||+.+.|..+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.80  E-value=6.7e-06  Score=55.20  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=21.8

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+..|+++|+|||||||+.+.|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999998753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.5e-05  Score=56.58  Aligned_cols=62  Identities=23%  Similarity=0.245  Sum_probs=39.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcCCCC----CCcccccceeeEEEEEEe-CCeEEEEEEeeCCCcc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----NQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQE   68 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~   68 (206)
                      .+..-|.|+|+.++|||+|+|.|++....    ....+. |..+..+...+ .+....+.++||.|..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~-T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSH-TKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCC-CCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCC-CCceEEEEeeccCCCCceEEEEeccccc
Confidence            34557789999999999999999986532    111222 22233333322 3344578899999943

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=6.3e-06  Score=53.87  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|+|++|||||||+++|...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4889999999999999999853

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.73  E-value=6.8e-06  Score=54.98  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+.+|+++|++||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999988654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=1e-05  Score=53.55  Aligned_cols=22  Identities=23%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+|+|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.69  E-value=1.1e-05  Score=51.79  Aligned_cols=21  Identities=19%  Similarity=0.659  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++|||||||++.|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678999999999999998653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.66  E-value=1.4e-05  Score=53.47  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+++|+|||||||+...|...
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999999999988753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.65  E-value=1.4e-05  Score=53.47  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+++|+|||||||+...|..+
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHH
Confidence            469999999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=1.5e-05  Score=52.77  Aligned_cols=23  Identities=26%  Similarity=0.615  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+++|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.62  E-value=1.5e-05  Score=52.84  Aligned_cols=22  Identities=23%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+++|+|||||||+...|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.6e-05  Score=52.62  Aligned_cols=24  Identities=21%  Similarity=0.536  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|+++|++||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.59  E-value=1.6e-05  Score=51.92  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|++.|++||||||+++.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999999764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.9e-05  Score=52.26  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+++|+|||||||....|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.2e-05  Score=52.53  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++.|+|+|+|||||||....|...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999988653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=2e-05  Score=51.37  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +.|+|.+|||||||+++|...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            469999999999999998753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.1e-05  Score=53.44  Aligned_cols=21  Identities=29%  Similarity=0.765  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++||+|+||+||+++|...
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999999864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2e-05  Score=50.90  Aligned_cols=22  Identities=23%  Similarity=0.578  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|+++|++||||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=2.5e-05  Score=51.38  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .+.=|+++|.+||||||++..+..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            355688999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=2.8e-05  Score=52.61  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .=|+++|.||||||||+++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999875

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.50  E-value=1.9e-05  Score=52.97  Aligned_cols=26  Identities=19%  Similarity=0.423  Sum_probs=21.3

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....-|+++|+|||||||+...|...
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            33445789999999999999999764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=2.9e-05  Score=53.80  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|||||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999987753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=2.7e-05  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+++|++||||||+.+.|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999888644

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.45  E-value=4.3e-05  Score=50.11  Aligned_cols=26  Identities=12%  Similarity=0.170  Sum_probs=21.7

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+-|.++|.+||||||+...|...
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34577889999999999999888654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.3e-05  Score=50.91  Aligned_cols=22  Identities=36%  Similarity=0.629  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|.+.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5889999999999999998753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=0.00043  Score=47.91  Aligned_cols=24  Identities=21%  Similarity=0.438  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.|++|+||||++..+...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.42  E-value=3.8e-05  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      +|+++|++||||||+...|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.41  E-value=4.4e-05  Score=49.93  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999998765

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.2e-05  Score=52.54  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4689999999999999998775

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.41  E-value=4.3e-05  Score=53.00  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.40  E-value=4e-05  Score=52.62  Aligned_cols=23  Identities=35%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            46899999999999999887653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.40  E-value=4.1e-05  Score=53.45  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4.2e-05  Score=50.91  Aligned_cols=21  Identities=33%  Similarity=0.713  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.39  E-value=4.3e-05  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            46899999999999999997753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.9e-05  Score=52.99  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            67999999999999999987643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=4.9e-05  Score=49.52  Aligned_cols=21  Identities=24%  Similarity=0.586  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      ++++|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999998764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=5.1e-05  Score=50.23  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999764

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.34  E-value=5.5e-05  Score=49.90  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.33  E-value=6.1e-05  Score=51.92  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|+.|||||||++.+.+-.
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCChHHHHHHHHHcCC
Confidence            5689999999999999998854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=5.6e-05  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..-|+++|+|||||||+...|...
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345788999999999999999764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=6.2e-05  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46899999999999999988754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=6.1e-05  Score=50.18  Aligned_cols=24  Identities=42%  Similarity=0.279  Sum_probs=20.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .++-|+|-|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356788999999999999999864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=6.6e-05  Score=53.23  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            57899999999999999998753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=6.9e-05  Score=50.01  Aligned_cols=21  Identities=33%  Similarity=0.716  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+||+|||||||++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.28  E-value=7.2e-05  Score=51.61  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            46899999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.28  E-value=7.2e-05  Score=52.53  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +.-|++.|+||+|||||+.++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=6.5e-05  Score=51.85  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46899999999999999987753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=8e-05  Score=51.43  Aligned_cols=25  Identities=28%  Similarity=0.551  Sum_probs=21.8

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ....+++.||||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.25  E-value=8e-05  Score=48.68  Aligned_cols=21  Identities=19%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.23  E-value=0.00022  Score=45.71  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKFS   34 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~~   34 (206)
                      ..-|++-|+-|+|||||++.+...-..
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhccc
Confidence            345788899999999999999865433

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.23  E-value=5e-05  Score=52.01  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            36899999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.22  E-value=9.6e-05  Score=50.36  Aligned_cols=25  Identities=16%  Similarity=0.308  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+.|++-||+||||||+...|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            4578889999999999999998764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0001  Score=49.96  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            57789999999999999998854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.0001  Score=49.82  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+++||+|||||||++.|...
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            578899999999999999865

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.20  E-value=9e-05  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36799999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.20  E-value=5.4e-05  Score=52.83  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++|++|||||||++.+.+-
T Consensus        46 ~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHhc
Confidence            6899999999999999887663

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.18  E-value=0.00012  Score=47.70  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999998775

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.17  E-value=0.00013  Score=50.74  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=21.7

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +...|++.|++|+|||+|++++...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhc
Confidence            4567999999999999999998753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00011  Score=50.79  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|+|||||++.+.+..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46799999999999999998764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=7.5e-05  Score=51.40  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++++|+.|+|||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            3689999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.14  E-value=0.00012  Score=51.24  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            46899999999999999997653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00012  Score=50.54  Aligned_cols=24  Identities=33%  Similarity=0.559  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...+++.||||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            457899999999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.09  E-value=0.00013  Score=52.84  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+|+|.|++|||||||+++|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            46899999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.07  E-value=0.00016  Score=48.23  Aligned_cols=27  Identities=30%  Similarity=0.512  Sum_probs=22.7

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...++-|+|-|..||||||+++.|...
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999988654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=0.00014  Score=50.67  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            5899999999999999998864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=7.3e-05  Score=49.73  Aligned_cols=24  Identities=29%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ...|.++|.+||||||+.+.|...
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            356788999999999999998653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.06  E-value=6.6e-05  Score=51.82  Aligned_cols=23  Identities=39%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999998854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.05  E-value=0.00015  Score=47.84  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=17.3

Q ss_pred             EE-EEEcCCCCCHHHHHHHHhc
Q 028654           10 KV-IILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i-~viG~~~~GKStli~~l~~   30 (206)
                      || ++.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            44 4569999999999998854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.96  E-value=0.00033  Score=46.44  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=22.0

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      .++-|+|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            46778999999999999999886543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00029  Score=46.84  Aligned_cols=24  Identities=29%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+++++|++|+|||++++.|..+
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            347899999999999999988764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.89  E-value=0.00022  Score=49.80  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+-.+++.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999998764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.85  E-value=0.00032  Score=47.99  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00034  Score=48.99  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-+++++|++|+|||++++.|..+
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            357899999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.84  E-value=0.00029  Score=50.64  Aligned_cols=25  Identities=24%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ++-.++++||||+|||.|++++.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            4567899999999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00035  Score=48.42  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ...+++.||+|+||||++..+.+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999998653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00036  Score=47.26  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|++.|||||||||+...|..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999988764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.74  E-value=0.00051  Score=46.32  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +...-|.+.|.+|||||||.+.|...
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567899999999999999998653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.00054  Score=47.51  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..|++.|++|+|||+|++++...
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            346999999999999999999864

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00064  Score=48.59  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             ceeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            6 RMLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         6 ~~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++-|+|.|++|||||||.+.|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4578899999999999999888754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00056  Score=47.73  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+..+++.||+|+|||++++++...
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHHH
Confidence            3457999999999999999998774

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0006  Score=47.50  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      +..+++.||+|+|||++++.+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHH
Confidence            456899999999999999998753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.00045  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.614  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      +=+|+++||+|||||-|+++|.+
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00079  Score=47.54  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=20.8

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHh
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~   29 (206)
                      +..++=|+|.|++|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            4457888999999999999987663

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0006  Score=46.64  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..+++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35889999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00065  Score=46.21  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            46899999999999999987653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.001  Score=44.71  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      .+-|+|.|..||||||+.+.|....+
T Consensus         3 k~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHCCC
Confidence            45688999999999999998865443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.53  E-value=0.00053  Score=48.08  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.52  E-value=0.00065  Score=47.39  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .|+|.|++|+|||||+..+..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            577889999999999998864

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0013  Score=44.05  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+-|+|.|..||||||+++.|...
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHC
Confidence            366899999999999999988643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00072  Score=46.01  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++++.|++|+||||++..+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            35889999999999999998764

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.43  E-value=0.00085  Score=44.92  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.00096  Score=46.70  Aligned_cols=25  Identities=32%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ...|++.|++|+|||+|++++.+..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHh
Confidence            4569999999999999999997654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0014  Score=44.06  Aligned_cols=20  Identities=40%  Similarity=0.556  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.07  E-value=0.0023  Score=41.62  Aligned_cols=25  Identities=48%  Similarity=0.682  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      .-|++.|++|+||||+.-.|..+.+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4588999999999999999887653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.001  Score=45.49  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      .|+|-|+.||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0024  Score=45.77  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-.++++||+|+|||.|+..+..
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHh
Confidence            34688999999999999999865

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.04  E-value=0.0016  Score=46.98  Aligned_cols=28  Identities=21%  Similarity=0.491  Sum_probs=24.2

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHHhcCC
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++..++|.|=|.-|+||||+++.|...-
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999997653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.04  E-value=0.0013  Score=48.54  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=19.0

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhc
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-+++++|++|+|||++++.|..
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHH
Confidence            34678999999999999977664

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.03  E-value=0.0013  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.468  Sum_probs=21.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ++-+++++||+|||||-|.++|..
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHHHh
Confidence            566799999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.99  E-value=0.0019  Score=45.43  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .-|+|.|++|+|||||+..+++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45779999999999999998754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0019  Score=43.43  Aligned_cols=20  Identities=20%  Similarity=0.424  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999998887754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.96  E-value=0.0026  Score=41.39  Aligned_cols=25  Identities=28%  Similarity=0.589  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      .-|++.|++|+||||+.-.|..+.+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4578999999999999999887543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0022  Score=42.92  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -+.+.|++|+|||+|+..+....
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            35788999999999998887543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.89  E-value=0.0022  Score=47.65  Aligned_cols=21  Identities=19%  Similarity=0.514  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|.|++||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            788899999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.88  E-value=0.0022  Score=46.88  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      ..+++.||||+|||+|++++.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999865

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.80  E-value=0.0012  Score=47.80  Aligned_cols=21  Identities=29%  Similarity=0.651  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      +++++|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998864

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.79  E-value=0.0011  Score=46.80  Aligned_cols=21  Identities=19%  Similarity=0.496  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      =|+|.|.+||||||+.++|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999988643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0027  Score=43.34  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -+.|.|++|+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            35788999999999998886543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.65  E-value=0.004  Score=40.21  Aligned_cols=25  Identities=36%  Similarity=0.646  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNRKF   33 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~~~   33 (206)
                      .-|++.|++|+||||+.-.+..+.+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4688999999999999988887653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0039  Score=42.56  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -|+|=|..||||||+++.|...
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5788899999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.58  E-value=0.0035  Score=42.98  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~~   32 (206)
                      -++|.|++|+|||+|.-.+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            35788999999999998887543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.56  E-value=0.005  Score=44.35  Aligned_cols=25  Identities=16%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.00059  Score=45.36  Aligned_cols=18  Identities=33%  Similarity=0.708  Sum_probs=16.0

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028654           12 IILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~   29 (206)
                      +++|+.|||||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            467999999999999975

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.37  E-value=0.0047  Score=41.59  Aligned_cols=21  Identities=38%  Similarity=0.618  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +.+.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999998764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.35  E-value=0.0051  Score=43.99  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.|+||+|||.|++++.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            345799999999999998764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.0049  Score=41.49  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |++-|..||||||+++.|...
T Consensus         6 I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            778899999999999988653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.28  E-value=0.0052  Score=41.88  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|.|++|+|||+|+..+...
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999887654

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.25  E-value=0.0032  Score=44.65  Aligned_cols=18  Identities=28%  Similarity=0.639  Sum_probs=16.1

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028654           12 IILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~   29 (206)
                      +++|+.||||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            588999999999999873

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.24  E-value=0.004  Score=41.25  Aligned_cols=23  Identities=13%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --+++.|++++|||+|++++..-
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHH
Confidence            46789999999999999887653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0062  Score=40.72  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +++.|++|+||||++..+...
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHh
Confidence            889999999999999987653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.12  E-value=0.0066  Score=43.57  Aligned_cols=24  Identities=42%  Similarity=0.545  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            8 LLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         8 ~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .++|.|=|.-|+||||+++.|...
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            468999999999999999988643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0076  Score=41.20  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      -++|.|++|+|||+|...+...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999888754

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.01  E-value=0.007  Score=41.28  Aligned_cols=21  Identities=14%  Similarity=0.243  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      -|++.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.0072  Score=41.29  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +++.|++|+||||++..+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78889999999999988754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.97  E-value=0.0063  Score=44.98  Aligned_cols=18  Identities=33%  Similarity=0.685  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 028654           12 IILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        12 ~viG~~~~GKStli~~l~   29 (206)
                      +++|+.|||||+++.++.
T Consensus        29 ~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          29 SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999999974

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.95  E-value=0.0072  Score=41.11  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028654           11 VIILGDSGVGKTSLMNQYVNRK   32 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~~   32 (206)
                      ++|.|++|+|||+|+..+....
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            5688999999999998887543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.69  E-value=0.011  Score=42.30  Aligned_cols=21  Identities=38%  Similarity=0.664  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      .++++|++|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.0084  Score=44.62  Aligned_cols=23  Identities=22%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 028654            9 LKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~~   31 (206)
                      .+++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            46999999999999998776543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.61  E-value=0.01  Score=41.29  Aligned_cols=20  Identities=25%  Similarity=0.552  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +++.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56889999999999877753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.56  E-value=0.01  Score=39.94  Aligned_cols=20  Identities=35%  Similarity=0.615  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 028654           10 KVIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~   29 (206)
                      -+.|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35788999999999987654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.56  E-value=0.0081  Score=42.72  Aligned_cols=16  Identities=31%  Similarity=0.725  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCCHHHHH
Q 028654           10 KVIILGDSGVGKTSLM   25 (206)
Q Consensus        10 ~i~viG~~~~GKStli   25 (206)
                      .++|.|++||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.53  E-value=0.0069  Score=42.72  Aligned_cols=15  Identities=33%  Similarity=0.747  Sum_probs=12.8

Q ss_pred             EEEEcCCCCCHHHHH
Q 028654           11 VIILGDSGVGKTSLM   25 (206)
Q Consensus        11 i~viG~~~~GKStli   25 (206)
                      ++|+|++|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.17  E-value=0.014  Score=40.53  Aligned_cols=25  Identities=16%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      ..--+.+.|++++|||+|++.+..-
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3456788899999999999998764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.016  Score=40.14  Aligned_cols=19  Identities=26%  Similarity=0.358  Sum_probs=16.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028654           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      .++.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4588999999999987764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.87  E-value=0.019  Score=40.30  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      |++++|++|+|||+|+..+...
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7899999999999999887653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.032  Score=40.53  Aligned_cols=17  Identities=35%  Similarity=0.647  Sum_probs=14.3

Q ss_pred             EEEEcCCCCCHHHHHHH
Q 028654           11 VIILGDSGVGKTSLMNQ   27 (206)
Q Consensus        11 i~viG~~~~GKStli~~   27 (206)
                      .+|.|++|+||||++..
T Consensus       166 ~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         166 SVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEECCTTSTHHHHHHH
T ss_pred             EEEEcCCCCCceehHHH
Confidence            56789999999998754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.73  E-value=0.051  Score=32.60  Aligned_cols=25  Identities=8%  Similarity=0.105  Sum_probs=21.3

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhcC
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~~   31 (206)
                      --+.|.+-|..|+|||||.++|...
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHH
Confidence            3578899999999999999998643

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.06  E-value=0.049  Score=37.55  Aligned_cols=84  Identities=14%  Similarity=0.064  Sum_probs=47.0

Q ss_pred             EEEEEeeCCCcccccc-ccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEeeCCCCCCCCc
Q 028654           57 FTLQIWDTAGQERFQS-LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNS  134 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~~  134 (206)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++..+......+.......   +.++ -+|.|+.+....  
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~---~~~~~~vv~N~~~~~~~--  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSG---GVRLGGIICNSRKVANE--  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTB---BCEEEEEEEECCSSSCC--
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhcccc---ceeccceEEeeecCCCc--
Confidence            4678999987443222 122223457888888876 4555665556555555443321   3333 378899876542  


Q ss_pred             ceecHHHHHHHHHHcC
Q 028654          135 RVVSEKKAKAWCASKG  150 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (206)
                          .+..+.+.+..+
T Consensus       190 ----~~~~~~~~~~~~  201 (269)
T d1cp2a_         190 ----YELLDAFAKELG  201 (269)
T ss_dssp             ----HHHHHHHHHHHT
T ss_pred             ----cchhhhhHhhcC
Confidence                344555555544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.99  E-value=0.051  Score=37.54  Aligned_cols=21  Identities=38%  Similarity=0.449  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +.+.|++++|||||+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            468899999999998777643

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.94  E-value=0.052  Score=35.19  Aligned_cols=21  Identities=14%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      |+|+|...||||.+...+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            579999999999999998754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.066  Score=37.24  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=17.9

Q ss_pred             cceeeEEEEEcCCCCCHHHHHHHH
Q 028654            5 RRMLLKVIILGDSGVGKTSLMNQY   28 (206)
Q Consensus         5 ~~~~~~i~viG~~~~GKStli~~l   28 (206)
                      ..++.-|.+.|..|+||||+.-.+
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCCeEEEEECCCcChHHHHHHHH
Confidence            334556678899999999976554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.73  E-value=0.45  Score=31.47  Aligned_cols=65  Identities=8%  Similarity=0.089  Sum_probs=43.5

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcEE-EEeeCCCCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDG  131 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~~  131 (206)
                      +.+.++|+|+....  .....+..+|.++++...+ ..+...+.+....+.+.       +.|++ +|+|+.+...
T Consensus       112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-------~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-------GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-------TCEEEEEEEEEETSCT
T ss_pred             CCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhhh-------hhhhhhhhhccccccc
Confidence            56889999986432  3344566799999999875 44555555555544432       56765 8999998654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.63  E-value=0.057  Score=36.94  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 028654            9 LKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         9 ~~i~viG~~~~GKStli~~l~~   30 (206)
                      .-|++.|++|+||+++.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            4578999999999999998854

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.56  E-value=0.066  Score=37.18  Aligned_cols=22  Identities=41%  Similarity=0.741  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7899999999999998887643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.69  E-value=0.057  Score=32.94  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=16.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      ..++.+++|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            446789999999998765543

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.06  E-value=0.13  Score=35.73  Aligned_cols=115  Identities=12%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             EEEEEeeCCCccccccccc-cceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCcE-EEEeeCCCCCCCCc
Q 028654           57 FTLQIWDTAGQERFQSLGV-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNS  134 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv-iiv~nK~D~~~~~~  134 (206)
                      +.+.++|+|+......... .....++.++++...+ ..+...+......+.......   +.++ -+|.|+.+...   
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~-~~s~~~~~~~~~~i~~~~~~~---~~~~~gvv~n~~~~~~---  191 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSG---SVRLGGLICNSRNTDR---  191 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTS---CCEEEEEEEECCCCTT---
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccchh-HHHHHHHHHHHHHHHhhhhcc---cccccceeehhhcchh---
Confidence            4678899987542222111 1123567777766543 444555555555554433221   3344 37889876432   


Q ss_pred             ceecHHHHHHHHHHcCCCcEEEee---------ccC---------CCCHHHHHHHHHHHHhhcCCC
Q 028654          135 RVVSEKKAKAWCASKGNIPYFETS---------AKE---------GFNVEAAFECIAKNALKNEPQ  182 (206)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~s---------~~~---------~~~i~~l~~~i~~~~~~~~~~  182 (206)
                         ..+..+.+....+ .+++.+-         ...         +.....-+..|.+.++++.+.
T Consensus       192 ---~~~~~~~~~~~~g-~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~  253 (289)
T d2afhe1         192 ---EDELIIALANKLG-TQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLL  253 (289)
T ss_dssp             ---HHHHHHHHHHHHT-SCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCC
T ss_pred             ---hHHHHHHHHHHcC-CeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCC
Confidence               1233444555544 3333221         111         222335678888888876654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.04  E-value=0.086  Score=37.14  Aligned_cols=15  Identities=47%  Similarity=0.764  Sum_probs=13.1

Q ss_pred             EEEcCCCCCHHHHHH
Q 028654           12 IILGDSGVGKTSLMN   26 (206)
Q Consensus        12 ~viG~~~~GKStli~   26 (206)
                      +++|.+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            688999999999763

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.85  E-value=0.14  Score=34.59  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028654           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      +++.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5678999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.80  E-value=0.14  Score=35.44  Aligned_cols=21  Identities=33%  Similarity=0.355  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028654           11 VIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~~   31 (206)
                      +.+.|++++|||+|+..+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            457899999999999887653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.13  Score=35.36  Aligned_cols=20  Identities=35%  Similarity=0.677  Sum_probs=14.5

Q ss_pred             eEEE-EEcCCCCCHHHHHHHH
Q 028654            9 LKVI-ILGDSGVGKTSLMNQY   28 (206)
Q Consensus         9 ~~i~-viG~~~~GKStli~~l   28 (206)
                      .+|+ +.|..|+||||+.-.|
T Consensus        20 ~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            3444 4599999999985554

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.65  E-value=0.093  Score=37.09  Aligned_cols=16  Identities=44%  Similarity=0.719  Sum_probs=13.6

Q ss_pred             EEEEcCCCCCHHHHHH
Q 028654           11 VIILGDSGVGKTSLMN   26 (206)
Q Consensus        11 i~viG~~~~GKStli~   26 (206)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            3788999999999764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.16  Score=33.33  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=16.4

Q ss_pred             EEEEEcCC-CCCHHHHHHHHh
Q 028654           10 KVIILGDS-GVGKTSLMNQYV   29 (206)
Q Consensus        10 ~i~viG~~-~~GKStli~~l~   29 (206)
                      |+.|.|.. |+||||+.-.|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67888995 999999876654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.38  E-value=0.16  Score=34.11  Aligned_cols=19  Identities=32%  Similarity=0.546  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028654           11 VIILGDSGVGKTSLMNQYV   29 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~   29 (206)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            5788999999999999864

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.30  E-value=0.14  Score=33.53  Aligned_cols=24  Identities=8%  Similarity=0.022  Sum_probs=20.9

Q ss_pred             eeeEEEEEcCCCCCHHHHHHHHhc
Q 028654            7 MLLKVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus         7 ~~~~i~viG~~~~GKStli~~l~~   30 (206)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.16  E-value=0.16  Score=35.02  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028654           11 VIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        11 i~viG~~~~GKStli~~l~~   30 (206)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            46889999999999877654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.96  E-value=0.11  Score=36.68  Aligned_cols=14  Identities=50%  Similarity=0.807  Sum_probs=13.0

Q ss_pred             EEEcCCCCCHHHHH
Q 028654           12 IILGDSGVGKTSLM   25 (206)
Q Consensus        12 ~viG~~~~GKStli   25 (206)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (323)
T d1ii2a1          18 VFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEECCTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999987

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.75  E-value=0.13  Score=35.78  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 028654           10 KVIILGDSGVGKTSLMNQYVNR   31 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~~   31 (206)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998766543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.25  E-value=0.26  Score=31.94  Aligned_cols=17  Identities=29%  Similarity=0.477  Sum_probs=13.5

Q ss_pred             EEEEEcCCCCCHHHHHH
Q 028654           10 KVIILGDSGVGKTSLMN   26 (206)
Q Consensus        10 ~i~viG~~~~GKStli~   26 (206)
                      ++++++++|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            46788999999997433

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.79  E-value=0.72  Score=28.61  Aligned_cols=26  Identities=19%  Similarity=0.354  Sum_probs=18.0

Q ss_pred             eeeEEEEEcC-CCCCHHHHHHHHhcCCC
Q 028654            7 MLLKVIILGD-SGVGKTSLMNQYVNRKF   33 (206)
Q Consensus         7 ~~~~i~viG~-~~~GKStli~~l~~~~~   33 (206)
                      .++||.|+|. .++|- ++...|..+..
T Consensus         3 ~p~KV~IiGA~G~VG~-~~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGY-SLLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHH-HHHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHH-HHHHHHHhccc
Confidence            3579999996 78885 55555655543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=84.80  E-value=0.19  Score=34.87  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 028654           10 KVIILGDSGVGKTSLMNQYVN   30 (206)
Q Consensus        10 ~i~viG~~~~GKStli~~l~~   30 (206)
                      |++++|.+|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            678999999999999866543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=82.99  E-value=0.42  Score=29.26  Aligned_cols=17  Identities=35%  Similarity=0.487  Sum_probs=13.4

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 028654           12 IILGDSGVGKTS-LMNQY   28 (206)
Q Consensus        12 ~viG~~~~GKSt-li~~l   28 (206)
                      +++||=.||||| |+.++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            467999999999 55554

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=82.81  E-value=1  Score=28.62  Aligned_cols=26  Identities=12%  Similarity=0.319  Sum_probs=17.5

Q ss_pred             ceeeEEEEEcC-CCCCHHHHHHHHhcCC
Q 028654            6 RMLLKVIILGD-SGVGKTSLMNQYVNRK   32 (206)
Q Consensus         6 ~~~~~i~viG~-~~~GKStli~~l~~~~   32 (206)
                      ..++||.|+|. .+.|=+ |+-.|..+.
T Consensus        22 k~~~kV~I~GA~G~Ig~~-l~~~La~g~   48 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNH-LLFKLASGE   48 (175)
T ss_dssp             CCCEEEEEETTTSHHHHH-HHHHHHHTT
T ss_pred             CCCcEEEEECCCcHHHHH-HHHHHHcCc
Confidence            35789999997 667755 444555544

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.04  E-value=0.21  Score=29.98  Aligned_cols=16  Identities=25%  Similarity=0.355  Sum_probs=12.6

Q ss_pred             eEEEEEcCCCCCHHHH
Q 028654            9 LKVIILGDSGVGKTSL   24 (206)
Q Consensus         9 ~~i~viG~~~~GKStl   24 (206)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4567778999999944

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.01  E-value=0.54  Score=31.00  Aligned_cols=64  Identities=13%  Similarity=-0.027  Sum_probs=38.4

Q ss_pred             EEEEEeeCCCccccccccccceecCcEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCCCCCc-EEEEeeCCCCC
Q 028654           57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVD  130 (206)
Q Consensus        57 ~~~~i~D~~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~  130 (206)
                      +.+.++|+|+....  .....+..+|.++++...+. .+..........+...       +.+ +-+|+|+.+..
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVAERL-------GTKVLGVVVNRITTL  174 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHHHHH-------TCEEEEEEEEEECTT
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeeccccc-cchhhhhhhhhhhhhc-------ccccccccccccccc
Confidence            45788999885432  33345567999999998753 3344443433333332       334 44789998643

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.78  E-value=0.17  Score=33.11  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCCHHHHH
Q 028654           10 KVIILGDSGVGKTSLM   25 (206)
Q Consensus        10 ~i~viG~~~~GKStli   25 (206)
                      ++++.+++|+|||+..
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            6789999999999753