Citrus Sinensis ID: 028663

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MAKKVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLINSLM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEEEEEEEcccEEEEcccccEEEEEEccccccccEEEEEcccccEEEEEEEccEEccccEEEEEEcccccccccccccEEEEEcccccccccEEEEEEEcccccccEEEEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEEEEEEEEEccccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEEEEEEEEccccEEEEEccccEEEEEcccccccccEEEEEcccccEEEEEEcccEEcccccEEEEEccccccccccccEEEEEEcccEEccccEEEEEEcccccccccEEEEcccccccEEEEcccccEEEEEEEccccccEEEcccEEEEEEcccccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
makkvhprgllsssssapcyfsskrETFTIWMKSLVLngkgctvfdsdghimyrvdnynsksnnevylMDFDGGVLFTILKKRYFRLFGfwegykstgkvetntkrpdfLVRQSFNMLRRNSDCEvilgldnnhpynyamtslngkcacKIVDNFGDTVAELKRKEarsgvvfgedvlsmevkpcVDLSLVMGLLVVYGLINSLM
Flexible Loop (DISEMBL)
makkvhprgllsssssapcyFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWegykstgkvetntkrpdFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKearsgvvfgedvlsmeVKPCVDLSLVMGLLVVYGLINSLM
Low Complexity Region (SEG)
MAKKVHPRGLLsssssapcyfssKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLINSLM
Disordered region (IsUnstruct)
******************CYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLIN***
Disordered Region (DISOPRED)
*AKKV***************FSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLINSL*
Disordered Region (DISEMBL)
****************APCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLINSLM
Disordered Region (DISPRO)
******************CYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLINSL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLINSLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q9LUM1	230	Protein LURP-one-related	yes	no	0.965	0.860	0.447	1e-38
Q9SH27	215	Protein LURP-one-related	no	no	0.912	0.869	0.415	3e-33
Q67XV7	217	Protein LURP-one-related	no	no	0.829	0.783	0.441	2e-32
Q8LG32	217	Protein LURP-one-related	no	no	0.829	0.783	0.441	2e-32
A0MFL4	221	Protein LURP-one-related	no	no	0.956	0.886	0.333	5e-18
Q9LVZ8	220	Protein LURP-one-related	no	no	0.853	0.795	0.338	1e-17
Q9SSC7	210	Protein LURP-one-related	no	no	0.834	0.814	0.327	8e-14
Q9ZVI6	196	Protein LURP-one-related	no	no	0.892	0.933	0.294	3e-13
Q9ZUF7	191	Protein LURP-one-related	no	no	0.829	0.890	0.244	0.0002

>sp|Q9LUM1|LOR11_ARATH Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/210 (44%), Positives = 135/210 (64%), Gaps = 12/210 (5%)

Query: 4   KVHPRGLLSSS---SSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNS 60
           K+HP    S +   +S+P Y ++++E+FTIWMKSLV N  GCTVFDS G+I+YRVDNYNS
Sbjct: 25  KIHPDLTTSGAGEETSSP-YLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYNS 83

Query: 61  KSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYK-STGKVETNTKRPDFLVRQS-FNML 118
           KS  EVYLMD  G VLFT L+++ F LF  WEGY+ S+  VE+ TK   F V+ + F + 
Sbjct: 84  KSCREVYLMDLSGHVLFT-LRRQKFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVP 142

Query: 119 RRNSDCEVIL---GLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGE 175
            ++S     +      N+  Y Y M +     A  I DN G  +AE+KRK++ +G+  G+
Sbjct: 143 NKDSSSSYRVNAGSCRNDEQYCYKMVTRGSSLA--IEDNCGKLLAEVKRKQSINGLKLGD 200

Query: 176 DVLSMEVKPCVDLSLVMGLLVVYGLINSLM 205
           DVL+M V+  VD S ++GL++ + LIN ++
Sbjct: 201 DVLTMMVESQVDHSFIIGLVLAHSLINCIL 230

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1

 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 126/202 (62%), Gaps = 15/202 (7%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           +V P+  +SS      Y S++RETFT+WMKSLV    G TV++S+G I YRV+NY+ K +
Sbjct: 3   RVFPQAAISSP-----YMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-KCS 56

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGK-VETNTKRPDFLVRQSFNMLRRNS 122
           NEV++MD  G +LFTI KK+ + LFG W  Y+  G    T   +P   +++S     R+ 
Sbjct: 57  NEVHIMDLHGNILFTIRKKKLW-LFGSWYVYRECGSFTSTEEVKPCARIKRS---SIRDG 112

Query: 123 DCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEV 182
           D EV    D  +   + +   + K A +I+D  G+ +A++K K++ +G+  GEDVL++EV
Sbjct: 113 DWEV---RDETNEV-FWILRFDPKFAFQIIDIHGNIIAQVKPKQSSNGITLGEDVLTLEV 168

Query: 183 KPCVDLSLVMGLLVVYGLINSL 204
           KP VD SLV+ L+ VYGLI  +
Sbjct: 169 KPRVDHSLVVTLVTVYGLIKGI 190

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XV7|LOR3_ARATH Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 18/188 (9%)

Query: 20  YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKS-NNEVYLMDFDGGVLFT 78
           Y ++++E FTIWMKSLV N KGCTVFDS G+++YRVDNY+SKS +NEVY MD +G +LFT
Sbjct: 36  YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFT 95

Query: 79  ILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNN 133
            L+++    F  WEGY STG          F +R+ F +L R S    +V++G   +D +
Sbjct: 96  -LRQKKLGFFKSWEGYNSTGT--------RFRLRKIFKILPRESSSSYKVVMGSRIVDGD 146

Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSLVM 192
               Y + +     A K  D  G  +AE+K K +  SG+  G+DVL+M V+P +D SL+M
Sbjct: 147 QQSCYKIVNRGSVFAIK--DGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIM 204

Query: 193 GLLVVYGL 200
           G+++ Y L
Sbjct: 205 GIVIAYKL 212

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG32|LOR2_ARATH Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870 PE=2 SV=2

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 119/188 (63%), Gaps = 18/188 (9%)

Query: 20  YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKS-NNEVYLMDFDGGVLFT 78
           Y ++++E FTIWMKSLV N KGCTVFDS G+++YRVDNY+SKS +NEVY MD +G +LFT
Sbjct: 36  YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFT 95

Query: 79  ILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNN 133
            L+++    F  WEGY STG          F +R+ F +L R S    +V++G   +D +
Sbjct: 96  -LRQKKLGFFKSWEGYNSTGT--------RFRLRKIFKILPRESSSSYKVVMGSRIVDGD 146

Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSLVM 192
               Y + +     A K  D  G  +AE+K K +  SG+  G+DVL+M V+P +D SL+M
Sbjct: 147 QQSCYKIVNRGSVFAIK--DGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIM 204

Query: 193 GLLVVYGL 200
           G+++ Y L
Sbjct: 205 GIVIAYKL 212

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 104/207 (50%), Gaps = 11/207 (5%)

Query: 2   AKKVH----PRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDN 57
           ++ VH    P    S+ S A         T T+W KSL+++ +G TV DS+G ++YRVDN
Sbjct: 9   SRSVHGEDAPSSTESTVSVAAADIGGACTTLTVWRKSLLVSCEGFTVIDSNGDLIYRVDN 68

Query: 58  YNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTG-KVETNTKR-PDFLVRQSF 115
           Y      E+ LMD DG  L  + + +   L   W  Y++   K ET   + P + +R++ 
Sbjct: 69  YARTRPEELILMDKDGNSLLLMHRTKKITLVDSWGIYEANDTKGETKIPKCPTWYMRKNL 128

Query: 116 --NMLRRNSDCEVILGLDNNHPYNYAMTSLNGKC-ACKIVD-NFGDTVAELKRKEARS-G 170
             N+L   SD    +   +    N  +   + +C +CKIV      TV E+KRKE R+ G
Sbjct: 129 KMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKG 188

Query: 171 VVFGEDVLSMEVKPCVDLSLVMGLLVV 197
           V FG DV  + V P  D  L M L+++
Sbjct: 189 VRFGSDVFDLVVNPGFDTGLAMALVLL 215

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 11/186 (5%)

Query: 20  YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNY--NSKSNNEVYLMDFDGGVLF 77
           Y   + +  T+   SL   G G   +D  G I++RVD+Y  +++ N+E+ LMD  G  L 
Sbjct: 25  YLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLL 84

Query: 78  TILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYN 137
           T+ +KR   L   WEG+       +  ++P F VR+S  + R   + EV  G        
Sbjct: 85  TVKRKRP-TLHQRWEGFLGE---RSEGQKPIFSVRRSSIIGRCTMEVEVYDGTGEE---- 136

Query: 138 YAMTSLNGKCACKIVDNFGDTVAELKRK-EARSGVVFGEDVLSMEVKPCVDLSLVMGLLV 196
           Y +     + +C I D    TVAE+KRK +A + V+ G DV ++E+KP  D +  MGL+V
Sbjct: 137 YIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVV 196

Query: 197 VYGLIN 202
           V   IN
Sbjct: 197 VLDQIN 202

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/183 (32%), Positives = 98/183 (53%), Gaps = 12/183 (6%)

Query: 20  YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNY---NSKSNNEVYLMDFDGGVL 76
           +   +  + T+   SL   G G TV+D  G +++RVD+Y   N++  +EV LMD  G  L
Sbjct: 11  FIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCL 70

Query: 77  FTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPY 136
            T L+++   L   WEGY       ++ ++P F VR+S +++ RNS    + G  +    
Sbjct: 71  LT-LRRKRPSLRRRWEGYLGE---RSDGQKPIFGVRRS-SIIGRNSVTVEVYG--DYQCS 123

Query: 137 NYAMTSLNGKCACKIVD-NFGDTVAELKRK-EARSGVVFGEDVLSMEVKPCVDLSLVMGL 194
            Y +    G   C +V+      VAE++RK +A + V+ G+DV S+ VKP  D +  MGL
Sbjct: 124 EYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGL 183

Query: 195 LVV 197
           ++V
Sbjct: 184 VLV 186

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 14/197 (7%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           KVHP+    S+       S      T+W KSL+ N  G TV++++G +++RVDNY +   
Sbjct: 3   KVHPK--FPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSD 123
           + + LMD  G  L +I +K+   L   W  Y   G+ E +   P F  R++ +++   S+
Sbjct: 61  DNIVLMDASGFPLLSIRRKK-LSLGDCWMVY--DGETERD---PIFTARKNVSII---SN 111

Query: 124 CEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGD--TVAELKRKEAR-SGVVFGEDVLSM 180
            + +  +       Y +    G+ +CKI+D   +    AE+KRKE    GV FG+DV  +
Sbjct: 112 RKSLAWVSAKKTVLYEIEGSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKL 171

Query: 181 EVKPCVDLSLVMGLLVV 197
            V+  ++  + M L ++
Sbjct: 172 IVESEMEPRVAMALTII 188

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 18/188 (9%)

Query: 20  YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNS-KSNNEVYLMDFDGGVLFT 78
           Y SS  E   +  +  V+NG G  V D    I++++D      +  E+ L D DG  L  
Sbjct: 9   YCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRDSDGNDLLL 68

Query: 79  ILKK----RYFRLFGFWEGYKSTGKVETNTKRPDFLVRQS-FNMLRRNSDCEVILGLDNN 133
           I KK    +   +   W+GY         + +P F +R    +     S   + +G  N 
Sbjct: 69  IHKKGGVVQALSIHNKWKGYSYD---YQGSPKPVFTLRDPKHSCFSITSSIRISVGPGNC 125

Query: 134 HPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMG 193
           +   + +        C IVD+ G+ +A++K        +   D+  +  KP VD + V G
Sbjct: 126 Y---FDVKGYFPDRDCSIVDSKGNVIAQVKEW------IGSRDIYKVVTKPSVDKAFVFG 176

Query: 194 LLVVYGLI 201
           ++ V   I
Sbjct: 177 VIAVLDYI 184

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224074101	199	predicted protein [Populus trichocarpa]	0.960	0.989	0.569	9e-62
255584442	203	GTP binding protein, putative [Ricinus c	0.956	0.965	0.591	2e-59
359482444	200	PREDICTED: protein LURP-one-related 11-l	0.946	0.97	0.572	3e-54
147793047	200	hypothetical protein VITISV_043717 [Viti	0.946	0.97	0.572	5e-54
357514307	199	hypothetical protein MTR_8g023060 [Medic	0.960	0.989	0.544	7e-53
388499456	199	unknown [Lotus japonicus]	0.960	0.989	0.544	2e-52
356559212	208	PREDICTED: protein LURP-one-related 11-l	0.951	0.937	0.535	6e-51
225426371	204	PREDICTED: protein LURP-one-related 4 [V	0.975	0.980	0.514	3e-50
297742543	210	unnamed protein product [Vitis vinifera]	0.960	0.938	0.517	8e-50
297742934	579	unnamed protein product [Vitis vinifera]	0.912	0.322	0.533	1e-47

>gi|224074101|ref|XP_002304253.1| predicted protein [Populus trichocarpa] gi|222841685|gb|EEE79232.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (616), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 153/202 (75%), Gaps = 5/202 (2%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           KVHP+ L+SS    PCY SSK+E+FT+WMKSLVL+GKGCTVFDSDGH++YRVDNY+SKS+
Sbjct: 3   KVHPQALVSSD---PCYLSSKQESFTVWMKSLVLSGKGCTVFDSDGHVVYRVDNYDSKSS 59

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSD 123
           NEV+LMDF+G VL+TIL+K+  +L GFWEGY+  G  E +  +P F VR++  +LR ++ 
Sbjct: 60  NEVHLMDFEGKVLYTILRKK-LKLLGFWEGYRCEGS-EIDKTKPGFQVRKTLRLLRGDAP 117

Query: 124 CEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVK 183
           C + +GLD N P  Y + S   K   KIVD  G  +AE++RK++  GVV GEDV++M V+
Sbjct: 118 CNITVGLDKNQPCQYMIESWTSKSTYKIVDKCGGLIAEVQRKQSACGVVLGEDVMTMVVE 177

Query: 184 PCVDLSLVMGLLVVYGLINSLM 205
           P +D SL+MGL+VVY LINS M
Sbjct: 178 PFIDHSLIMGLVVVYSLINSKM 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584442|ref|XP_002532952.1| GTP binding protein, putative [Ricinus communis] gi|223527281|gb|EEF29436.1| GTP binding protein, putative [Ricinus communis]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/203 (59%), Positives = 151/203 (74%), Gaps = 7/203 (3%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           K+HP+ L+ SS+  PCYF+SK+ETFTIWMKSLVLNGKGCTVFDS+G ++YRVDNYN K  
Sbjct: 3   KIHPQALVPSSA-PPCYFTSKQETFTIWMKSLVLNGKGCTVFDSNGLVVYRVDNYNCKRR 61

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSD 123
           NEV+LMDF G VLFTIL+K+  +L+G WEGY+S    + N  +P F VR+ F +LR    
Sbjct: 62  NEVHLMDFKGEVLFTILRKK-LKLWGCWEGYRSI-DAKINETKPVFQVRRPFRLLRGGLA 119

Query: 124 CEVILGLDNNHP---YNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSM 180
           C VI+GLD + P   YN  ++   GK  CKIVD  G  +AE+KRK++ SGVV GEDVL+M
Sbjct: 120 CSVIVGLDKDQPSAQYN-IVSGWTGKSICKIVDISGILIAEVKRKQSGSGVVLGEDVLTM 178

Query: 181 EVKPCVDLSLVMGLLVVYGLINS 203
            V+P +D SL+MGLLVVY LI S
Sbjct: 179 VVEPSIDHSLIMGLLVVYNLIKS 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482444|ref|XP_003632774.1| PREDICTED: protein LURP-one-related 11-like [Vitis vinifera]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 118/206 (57%), Positives = 149/206 (72%), Gaps = 12/206 (5%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           +VHP+ LLSS   A CYF+SK+E FTIWMKSLVL+GKGCTVFDS+G I+YRVDNY+ K +
Sbjct: 3   RVHPQSLLSS---AHCYFTSKQEVFTIWMKSLVLHGKGCTVFDSNGGIVYRVDNYDRKCS 59

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVR-QSFNMLRRNS 122
           NEVYLMDF G VL+TIL+KR F+ F  WEGY +  +++    +P F VR ++F +LR  S
Sbjct: 60  NEVYLMDFRGKVLYTILRKR-FKFFCCWEGYCAAKEIKQG--KPGFRVRSKTFGILRGGS 116

Query: 123 DCEVILGLDNNHPYNYAM---TSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLS 179
             + ++GLD N P    +   TS N    CKIVD  G  VAE+KRK ++ GVV G+DVL+
Sbjct: 117 PFKAVVGLDKNQPCQIKIEKRTSSNS--TCKIVDELGLLVAEVKRKTSKCGVVLGDDVLT 174

Query: 180 MEVKPCVDLSLVMGLLVVYGLINSLM 205
           M V+P +D SLVMGLLVVYGLIN  M
Sbjct: 175 MVVEPYIDHSLVMGLLVVYGLINHKM 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793047|emb|CAN62133.1| hypothetical protein VITISV_043717 [Vitis vinifera]

 Score =  216 bits (549), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 118/206 (57%), Positives = 149/206 (72%), Gaps = 12/206 (5%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           +VHP+ LLSS   A CYF+SK+E FTIWMKSLVL+GKGCTVFDS+G I+YRVDNY+ K +
Sbjct: 3   RVHPQSLLSS---AHCYFTSKQEVFTIWMKSLVLHGKGCTVFDSNGGIVYRVDNYDRKFS 59

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVR-QSFNMLRRNS 122
           NEVYLMDF G VL+TIL+KR F+ F  WEGY +  +++    +P F VR ++F +LR  S
Sbjct: 60  NEVYLMDFRGKVLYTILRKR-FKFFCCWEGYCAAKEIKQG--KPGFRVRSKTFGILRGGS 116

Query: 123 DCEVILGLDNNHPYNYAM---TSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLS 179
             + ++GLD N P    +   TS N    CKIVD  G  VAE+KRK ++ GVV G+DVL+
Sbjct: 117 PFKAVVGLDKNQPCQIKIEKRTSSNS--TCKIVDELGLLVAEVKRKTSKCGVVLGDDVLT 174

Query: 180 MEVKPCVDLSLVMGLLVVYGLINSLM 205
           M V+P +D SLVMGLLVVYGLIN  M
Sbjct: 175 MVVEPYIDHSLVMGLLVVYGLINHKM 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514307|ref|XP_003627442.1| hypothetical protein MTR_8g023060 [Medicago truncatula] gi|355521464|gb|AET01918.1| hypothetical protein MTR_8g023060 [Medicago truncatula] gi|388510226|gb|AFK43179.1| unknown [Medicago truncatula]

 Score =  212 bits (539), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 143/202 (70%), Gaps = 5/202 (2%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           KVHP+ L SS++   C F+SK+E+FT+WMKSLVLNGKGCTVFDS+G I YRVDNYNS   
Sbjct: 3   KVHPQALASSTT---CNFTSKQESFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNSNHR 59

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSD 123
           ++V+LMD  G  LFTILKK+Y +L  FWEGYK       + K P F V +++++ + +S 
Sbjct: 60  DQVHLMDQRGNTLFTILKKQY-KLSRFWEGYKLPA-TRNDQKGPCFRVGKTYSISKWDSS 117

Query: 124 CEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVK 183
            EV LGLD N PYNY + S   K ACKI+D  G  VAEL+RK++  G+  G DV +M V+
Sbjct: 118 YEVELGLDKNQPYNYKIESSTCKPACKIMDKNGVIVAELRRKKSTCGIDLGNDVFTMVVE 177

Query: 184 PCVDLSLVMGLLVVYGLINSLM 205
           P +DLSL+MG++V Y LI S M
Sbjct: 178 PNIDLSLIMGVVVAYSLIKSKM 199

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499456|gb|AFK37794.1| unknown [Lotus japonicus]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 137/202 (67%), Gaps = 5/202 (2%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           KVHP+ L SS++   C+ +SK+ETFT+WMK LVLNGKGCTVFDS+G I YRVDNYN    
Sbjct: 3   KVHPQALHSSTT---CHLTSKQETFTLWMKPLVLNGKGCTVFDSNGQIAYRVDNYNCSHR 59

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSD 123
           NEV+LMD  G VLFTILKK   +   FWEGY+     +   K P F V Q+  + + +S 
Sbjct: 60  NEVHLMDQKGNVLFTILKK-LCKFSRFWEGYRFPA-TKNEHKGPSFRVYQTHRISKGDST 117

Query: 124 CEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVK 183
           C+V LGLD N  Y Y + S+  K ACKI D FG  VAEL+RK++  GV  G+DV +M V+
Sbjct: 118 CQVELGLDKNQSYTYKIESITCKSACKITDEFGVMVAELRRKKSNCGVDLGDDVFTMVVE 177

Query: 184 PCVDLSLVMGLLVVYGLINSLM 205
           P  DLSL+MGL+V Y LIN  M
Sbjct: 178 PNKDLSLIMGLVVTYSLINYRM 199

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559212|ref|XP_003547894.1| PREDICTED: protein LURP-one-related 11-like [Glycine max]

 Score =  206 bits (523), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 138/200 (69%), Gaps = 5/200 (2%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           KVHP+ L   +S   C F+ K+ETFT+WMKSLVLNGKGCTVFDS+G I YRVDNYN K  
Sbjct: 10  KVHPQAL---NSYTTCNFTCKQETFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNCKHR 66

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYK-STGKVETNTKRPDFLVRQSFNMLRRNS 122
           +EV+LMD +G +LFT+LKK+Y +L  FWEGY+        + KRP F V +++ + R  S
Sbjct: 67  DEVHLMDQNGDILFTMLKKQY-KLSRFWEGYRFPVPATRNDHKRPCFRVSKTYKISRGGS 125

Query: 123 DCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEV 182
             EV LGLD N PY + +       ACKI +  G  VAEL+RK++  GV  G+DVL+M V
Sbjct: 126 TYEVELGLDKNQPYTHKIERNTFNSACKISNELGVVVAELRRKKSPCGVDLGDDVLTMVV 185

Query: 183 KPCVDLSLVMGLLVVYGLIN 202
           +P +DLSL+MGL+V Y LIN
Sbjct: 186 EPNIDLSLIMGLVVAYNLIN 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426371|ref|XP_002269437.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 141/204 (69%), Gaps = 4/204 (1%)

Query: 4   KVHPRGLLSSSSSAPC--YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSK 61
           KVHP+   ++  S P     +SKRE FTIWMKSLV+ G GCTVF+SDG I+YR+DNY+ K
Sbjct: 3   KVHPQTFTAAPLSPPSDSCITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYDKK 62

Query: 62  SNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRN 121
            ++EVYLMD  G VLFTIL+++  R+FG WEGYKS G  + N ++P F VR++  +L   
Sbjct: 63  CSSEVYLMDLQGKVLFTILQRK-LRVFGRWEGYKSNGS-KGNNQKPWFQVRKNCRILGGG 120

Query: 122 SDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSME 181
           S C+V +  +    Y Y +  L GK A KIVD+ G  +AE+++K+  SGVV GEDVL++ 
Sbjct: 121 SSCQVTVRPNEAQSYCYRIQGLTGKSAFKIVDSQGGLLAEVEQKQTSSGVVLGEDVLNLV 180

Query: 182 VKPCVDLSLVMGLLVVYGLINSLM 205
           V+P VD SLVM L+ VYGLI+  M
Sbjct: 181 VEPHVDHSLVMALVAVYGLIHHRM 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742543|emb|CBI34692.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 104/201 (51%), Positives = 140/201 (69%), Gaps = 4/201 (1%)

Query: 4   KVHPRGLLSSSSSAPC--YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSK 61
           KVHP+   ++  S P     +SKRE FTIWMKSLV+ G GCTVF+SDG I+YR+DNY+ K
Sbjct: 3   KVHPQTFTAAPLSPPSDSCITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYDKK 62

Query: 62  SNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRN 121
            ++EVYLMD  G VLFTIL+++  R+FG WEGYKS G  + N ++P F VR++  +L   
Sbjct: 63  CSSEVYLMDLQGKVLFTILQRK-LRVFGRWEGYKSNGS-KGNNQKPWFQVRKNCRILGGG 120

Query: 122 SDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSME 181
           S C+V +  +    Y Y +  L GK A KIVD+ G  +AE+++K+  SGVV GEDVL++ 
Sbjct: 121 SSCQVTVRPNEAQSYCYRIQGLTGKSAFKIVDSQGGLLAEVEQKQTSSGVVLGEDVLNLV 180

Query: 182 VKPCVDLSLVMGLLVVYGLIN 202
           V+P VD SLVM L+ VYGLI+
Sbjct: 181 VEPHVDHSLVMALVAVYGLIH 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742934|emb|CBI35801.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 137/195 (70%), Gaps = 8/195 (4%)

Query: 4   KVHPRGLLSSSSSAPCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSN 63
           +VHP+ LLSS   A CYF+SK+E FTIWMKSLVL+GKGCTVFDS+G I+YRVDNY+ K +
Sbjct: 3   RVHPQSLLSS---AHCYFTSKQEVFTIWMKSLVLHGKGCTVFDSNGGIVYRVDNYDRKCS 59

Query: 64  NEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVR-QSFNMLRRNS 122
           NEVYLMDF G VL+TIL+KR F+ F  WEGY +  +++    +P F VR ++F +LR  S
Sbjct: 60  NEVYLMDFRGKVLYTILRKR-FKFFCCWEGYCAAKEIKQG--KPGFRVRSKTFGILRGGS 116

Query: 123 DCEVILGLDNNHPYNYAMTS-LNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSME 181
             + ++GLD N P    +    +    CKIVD  G  VAE+KRK ++ GVV G+DVL+M 
Sbjct: 117 PFKAVVGLDKNQPCQIKIEKRTSSNSTCKIVDELGLLVAEVKRKTSKCGVVLGDDVLTMV 176

Query: 182 VKPCVDLSLVMGLLV 196
           V+P +D SL   LL+
Sbjct: 177 VEPYIDHSLRERLLM 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2091040	230	AT3G14260 "AT3G14260" [Arabido	0.873	0.778	0.475	2.1e-36
TAIR|locus:2197036	217	AT1G53870 "AT1G53870" [Arabido	0.809	0.764	0.451	7.7e-32
TAIR|locus:2197046	580	AT1G53880 "AT1G53880" [Arabido	0.760	0.268	0.421	8.5e-28
TAIR|locus:2814880	580	AT1G53900 "AT1G53900" [Arabido	0.760	0.268	0.421	8.5e-28
TAIR|locus:2160427	221	AT5G41590 "AT5G41590" [Arabido	0.834	0.773	0.359	5.7e-20
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.809	0.754	0.355	1.7e-18
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.814	0.795	0.346	2.5e-17
TAIR|locus:2064179	196	AT2G38640 "AT2G38640" [Arabido	0.780	0.816	0.302	8.8e-15
TAIR|locus:2064686	191	AT2G05910 "AT2G05910" [Arabido	0.8	0.858	0.236	0.00016
TAIR|locus:2180459	215	AT5G20640 "AT5G20640" [Arabido	0.8	0.762	0.255	0.00033

TAIR|locus:2091040 AT3G14260 "AT3G14260" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 89/187 (47%), Positives = 123/187 (65%)

Query:    24 KRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKR 83
             ++E+FTIWMKSLV N  GCTVFDS G+I+YRVDNYNSKS  EVYLMD  G VLFT L+++
Sbjct:    47 EQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYNSKSCREVYLMDLSGHVLFT-LRRQ 105

Query:    84 YFRLFGFWEGYKSTGK-VETNTKRPDFLVRQS-FNMLRRNSDCE--VILG-LDNNHPYNY 138
              F LF  WEGY+S+   VE+ TK   F V+ + F +  ++S     V  G   N+  Y Y
Sbjct:   106 KFGLFKTWEGYRSSSATVESTTKLEYFRVKNNVFQVPNKDSSSSYRVNAGSCRNDEQYCY 165

Query:   139 AMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVY 198
              M +     A  I DN G  +AE+KRK++ +G+  G+DVL+M V+  VD S ++GL++ +
Sbjct:   166 KMVTRGSSLA--IEDNCGKLLAEVKRKQSINGLKLGDDVLTMMVESQVDHSFIIGLVLAH 223

Query:   199 GLINSLM 205
              LIN ++
Sbjct:   224 SLINCIL 230

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197036 AT1G53870 "AT1G53870" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 83/184 (45%), Positives = 118/184 (64%)

Query:    24 KRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKS-NNEVYLMDFDGGVLFTILKK 82
             ++E FTIWMKSLV N KGCTVFDS G+++YRVDNY+SKS +NEVY MD +G +LFT+ +K
Sbjct:    40 EQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLRQK 99

Query:    83 RYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNNHPYN 137
             +    F  WEGY STG     T+   F +R+ F +L R S    +V++G   +D +    
Sbjct:   100 K-LGFFKSWEGYNSTG-----TR---FRLRKIFKILPRESSSSYKVVMGSRIVDGDQQSC 150

Query:   138 YAMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSLVMGLLV 196
             Y + +     A K  D  G  +AE+K K +  SG+  G+DVL+M V+P +D SL+MG+++
Sbjct:   151 YKIVNRGSVFAIK--DGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLDHSLIMGIVI 208

Query:   197 VYGL 200
              Y L
Sbjct:   209 AYKL 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197046 AT1G53880 "AT1G53880" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 8.5e-28, P = 8.5e-28
 Identities = 73/173 (42%), Positives = 112/173 (64%)

Query:    24 KRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKR 83
             ++E+FTIWM+SLV + KGCTVFDS G+++YRVDNYNSKS +EVYLMD  G +LFT+ +K+
Sbjct:    28 EKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSCSEVYLMDLYGKILFTLRQKK 87

Query:    84 YFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNNHPYNY 138
                LF  W+GY STG     T+   F +R++F +L + S    +V++G   +D +H   Y
Sbjct:    88 -LGLFKSWKGYNSTG-----TR---FQLRKNFKILPKGSSSSYKVVMGSRIVDGDHQSCY 138

Query:   139 AMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSL 190
              +  +  K    I D  G  +AE+K+K++    +  G+DVL+M V+P ++  +
Sbjct:   139 KI--VKRKSVFTIEDGSGRLLAEVKKKQSNIKSLDLGKDVLTMMVEPQLETEI 189

GO:0003743 "translation initiation factor activity" evidence=ISS;IBA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=IBA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

TAIR|locus:2814880 AT1G53900 "AT1G53900" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 8.5e-28, P = 8.5e-28
 Identities = 73/173 (42%), Positives = 112/173 (64%)

Query:    24 KRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKR 83
             ++E+FTIWM+SLV + KGCTVFDS G+++YRVDNYNSKS +EVYLMD  G +LFT+ +K+
Sbjct:    28 EKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSCSEVYLMDLYGKILFTLRQKK 87

Query:    84 YFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC--EVILG---LDNNHPYNY 138
                LF  W+GY STG     T+   F +R++F +L + S    +V++G   +D +H   Y
Sbjct:    88 -LGLFKSWKGYNSTG-----TR---FQLRKNFKILPKGSSSSYKVVMGSRIVDGDHQSCY 138

Query:   139 AMTSLNGKCACKIVDNFGDTVAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSL 190
              +  +  K    I D  G  +AE+K+K++    +  G+DVL+M V+P ++  +
Sbjct:   139 KI--VKRKSVFTIEDGSGRLLAEVKKKQSNIKSLDLGKDVLTMMVEPQLETEI 189

GO:0003743 "translation initiation factor activity" evidence=ISS;IBA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=IBA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

TAIR|locus:2160427 AT5G41590 "AT5G41590" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 64/178 (35%), Positives = 95/178 (53%)

Query:    27 TFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFR 86
             T T+W KSL+++ +G TV DS+G ++YRVDNY      E+ LMD DG  L  + + +   
Sbjct:    38 TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97

Query:    87 LFGFWEGYKSTG-KVETNT-KRPDFLVRQSF--NMLRRNSDCEVILGLDNNHPYNYAMTS 142
             L   W  Y++   K ET   K P + +R++   N+L   SD    +   +    N  +  
Sbjct:    98 LVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIK 157

Query:   143 LNGKC-ACKIVD-NFGDTVAELKRKEARS-GVVFGEDVLSMEVKPCVDLSLVMGLLVV 197
              + +C +CKIV      TV E+KRKE R+ GV FG DV  + V P  D  L M L+++
Sbjct:   158 GSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALVLL 215

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 63/177 (35%), Positives = 95/177 (53%)

Query:    29 TIWMKSLVLNGKGCTVFDSDGHIMYRVDNY--NSKSNNEVYLMDFDGGVLFTILKKRYFR 86
             T+   SL   G G   +D  G I++RVD+Y  +++ N+E+ LMD  G  L T+ +KR   
Sbjct:    34 TVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRP-T 92

Query:    87 LFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGK 146
             L   WEG+   G+  +  ++P F VR+S  + R   + EV  G        Y +     +
Sbjct:    93 LHQRWEGF--LGE-RSEGQKPIFSVRRSSIIGRCTMEVEVYDGTGEE----YIIDGDFSQ 145

Query:   147 CACKIVDNFGDTVAELKRK-EARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLIN 202
              +C I D    TVAE+KRK +A + V+ G DV ++E+KP  D +  MGL+VV   IN
Sbjct:   146 RSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQIN 202

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 62/179 (34%), Positives = 99/179 (55%)

Query:    24 KRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNY---NSKSNNEVYLMDFDGGVLFTIL 80
             +  + T+   SL   G G TV+D  G +++RVD+Y   N++  +EV LMD  G  L T+ 
Sbjct:    15 EERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCLLTLR 74

Query:    81 KKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAM 140
             +KR   L   WEGY   G+  ++ ++P F VR+S +++ RNS    + G  +     Y +
Sbjct:    75 RKRP-SLRRRWEGY--LGE-RSDGQKPIFGVRRS-SIIGRNSVTVEVYG--DYQCSEYLI 127

Query:   141 TSLNGKCACKIVD-NFGDTVAELKRK-EARSGVVFGEDVLSMEVKPCVDLSLVMGLLVV 197
                 G   C +V+      VAE++RK +A + V+ G+DV S+ VKP  D +  MGL++V
Sbjct:   128 EGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLV 186

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064179 AT2G38640 "AT2G38640" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 52/172 (30%), Positives = 92/172 (53%)

Query:    29 TIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLF 88
             T+W KSL+ N  G TV++++G +++RVDNY +   + + LMD  G  L +I +K+   L 
Sbjct:    26 TVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPRDNIVLMDASGFPLLSIRRKK-LSLG 84

Query:    89 GFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCA 148
               W  Y   G+ E +   P F  R++ +++   S+ + +  +       Y +    G+ +
Sbjct:    85 DCWMVYD--GETERD---PIFTARKNVSII---SNRKSLAWVSAKKTVLYEIEGSYGQRS 136

Query:   149 CKIVDNFGDT--VAELKRKEAR-SGVVFGEDVLSMEVKPCVDLSLVMGLLVV 197
             CKI+D   +    AE+KRKE    GV FG+DV  + V+  ++  + M L ++
Sbjct:   137 CKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVESEMEPRVAMALTII 188

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064686 AT2G05910 "AT2G05910" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 0.00016, P = 0.00016
 Identities = 43/182 (23%), Positives = 76/182 (41%)

Query:    26 ETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSK-SNNEVYLMDFDGGVLFTILKK-- 82
             E   +  +  V+NG G  V D    I++++D      +  E+ L D DG  L  I KK  
Sbjct:    15 EVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGVLGTKGELVLRDSDGNDLLLIHKKGG 74

Query:    83 --RYFRLFGFWEGYKSTGKVETNTKRPDFLVRQ-SFNMLRRNSDCEVILGLDNNHPYNYA 139
               +   +   W+GY    +    + +P F +R    +     S   + +G  N +   + 
Sbjct:    75 VVQALSIHNKWKGYSYDYQ---GSPKPVFTLRDPKHSCFSITSSIRISVGPGNCY---FD 128

Query:   140 MTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYG 199
             +        C IVD+ G+ +A++K        +   D+  +  KP VD + V G++ V  
Sbjct:   129 VKGYFPDRDCSIVDSKGNVIAQVKEW------IGSRDIYKVVTKPSVDKAFVFGVIAVLD 182

Query:   200 LI 201
              I
Sbjct:   183 YI 184

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180459 AT5G20640 "AT5G20640" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 0.00033, P = 0.00033
 Identities = 46/180 (25%), Positives = 86/180 (47%)

Query:    36 VLNGKGCTVFDSDGHIMYRVDNYNSK-SNNEVYLMDFDGGVLFTILK-----KRYFRLFG 89
             ++NG G  V +S   +++RVD      +  ++ L + DG  L  I K     +    +  
Sbjct:    33 MVNGGGFVVSNSKQVVVFRVDGCGVLGTKGKLLLRNGDGNDLLLIRKMGGIVQALNMVHN 92

Query:    90 FWEGYKSTGKVETNTKRPDFLVRQ-SFNMLRRNSDCEVIL-GLD---NNHPYNYA-MTSL 143
              WEG+   G     T+R  F ++    + L +NS  ++++ G     ++   NY  +   
Sbjct:    93 KWEGF---GYDNEGTERLVFTLKDPKDSCLVQNSSIKILVHGKPPKISSTRNNYVEIKGS 149

Query:   144 NGKCACKIVDNFGDTVAELK-RKEARSGVVFGEDVLSMEVKPCVDLSLVMGLLVVYGLIN 202
               + AC I+D+ G  +A+++  KE    V   +D+  + VKP VD S ++GL+ +   I+
Sbjct:   150 FAERACNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVKPNVDQSFIVGLIAILDYIH 209


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       193   0.00098  110 3  11 22  0.42    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  586 (62 KB)
  Total size of DFA:  167 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.84u 0.09s 16.93t   Elapsed:  00:00:00
  Total cpu time:  16.84u 0.09s 16.93t   Elapsed:  00:00:00
  Start:  Sat May 11 06:26:26 2013   End:  Sat May 11 06:26:26 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LUM1	LOR11_ARATH	No assigned EC number	0.4476	0.9658	0.8608	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam04525	185	pfam04525, Tub_2, Tubby C 2	1e-40

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  136 bits (343), Expect = 1e-40
 Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 14/185 (7%)

Query: 20  YFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTI 79
           Y S + E  T+W KSLV NG G TV+DS+G++++RVD Y    ++E  LMD  G  L TI
Sbjct: 8   YLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSSGNPLLTI 67

Query: 80  LKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLR-------RNSDCEVILGLDN 132
            +K+   L   WE Y+  G      K P F VR+S  +            +  VI+  + 
Sbjct: 68  RRKK-LSLHDRWEVYRGEGTEG---KDPLFTVRRSSIVQLKTSSSVFSKRNSNVIVDDEK 123

Query: 133 NHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCVDLSLVM 192
           N   ++ +       +CKI D+    +AE+KR +   GV  G+DV ++ VKP VD + +M
Sbjct: 124 N--CDFDIKGSFLDRSCKIYDDSDKLIAEVKR-QTSKGVFLGKDVYTVTVKPEVDYAFIM 180

Query: 193 GLLVV 197
            L+VV
Sbjct: 181 ALVVV 185

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	100.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.62
COG4894	159	Uncharacterized conserved protein [Function unknow	98.22
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	97.79
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	97.72
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	96.06

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=1.5e-45  Score=300.67  Aligned_cols=175  Identities=30%  Similarity=0.458  Sum_probs=108.1

Q ss_pred             CcccCCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEec-cCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEee
Q 028663           18 PCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDN-YNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKS   96 (205)
Q Consensus        18 ~~~~~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g-~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~   96 (205)
                      ++||+++|++|+||+|.+++++|+|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.+ +++++|++|++
T Consensus         6 ~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~-~l~~~w~i~~~   84 (187)
T PF04525_consen    6 AQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLF-SLRPTWEIYRG   84 (187)
T ss_dssp             GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE---------EEEEEET
T ss_pred             HHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeec-ccceEEEEEEC
Confidence            6799999999999999999999999999999999999999 899999999999999999999999999 99999999994


Q ss_pred             CCcccCCCCCceEEEEeeeeecccCCeeEEEEecC------CCCCceEEEEeeCCCeeEEEEcCCCCEEEEEEeeeeccc
Q 028663           97 TGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLD------NNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSG  170 (205)
Q Consensus        97 dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~------~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~v~rk~~~~~  170 (205)
                      ++   .+.++++|+||+++.+ +.+++..+|+...      .+..++|+|+|+|++++|+|++.+|++||||+||+..++
T Consensus        85 ~~---~~~~~~i~tvkk~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~rk~~~k~  160 (187)
T PF04525_consen   85 GG---SEGKKPIFTVKKKSML-QNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISRKYSSKK  160 (187)
T ss_dssp             T------GGGEEEEEE-----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE------
T ss_pred             CC---CccCceEEEEEEeccc-CCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEecccceee
Confidence            33   3447789999999654 6788889888632      146789999999999999999777899999999988888


Q ss_pred             eeeeeceEEEEEeCCCCHHHHHHHHHH
Q 028663          171 VVFGEDVLSMEVKPCVDLSLVMGLLVV  197 (205)
Q Consensus       171 ~~~~~dty~l~V~pgvD~ali~alvv~  197 (205)
                      +++|+|+|.|+|+||+|++|++|||||
T Consensus       161 ~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  161 WFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             ----B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             EEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            999999999999999999999999987

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.7e-34  Score=220.83  Aligned_cols=153  Identities=20%  Similarity=0.243  Sum_probs=138.4

Q ss_pred             EEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCC
Q 028663           27 TFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKR  106 (205)
Q Consensus        27 ~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~  106 (205)
                      +|.+.+|..++ +|+|.|+|.+|+.+|+|+|+++++++.+.|.|++|.+|..|++|++ ++.++|++..++|.       
T Consensus         7 tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll-~l~~~yeI~d~~g~-------   77 (159)
T COG4894           7 TLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLL-SLLPRYEISDGGGT-------   77 (159)
T ss_pred             hHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHh-hccceeEEEcCCCC-------
Confidence            56777776666 7999999999999999999999999999999999999999999999 99999999995553       


Q ss_pred             ceEEEEeeeeecccCCeeEEEEecCCCCCceEEEEeeCCCeeEEEEcCCCCEEEEEEeeeeccceeeeeceEEEEEeCCC
Q 028663          107 PDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNFGDTVAELKRKEARSGVVFGEDVLSMEVKPCV  186 (205)
Q Consensus       107 ~lf~vkk~~~~~~~k~~~~V~l~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~v~rk~~~~~~~~~~dty~l~V~pgv  186 (205)
                       .|.|+|+.+|+  ++++++.  +     .+|+++||+|+.+|++.++ ++++|+|+|||     ++|+|||.|+|+|+.
T Consensus        78 -~~~vrKK~tf~--Rdk~e~d--~-----~~~eihGNi~d~efkl~dg-~~~~aeVsKkw-----f~~rdTY~l~vapde  141 (159)
T COG4894          78 -VCEVRKKVTFS--RDKFEID--G-----LNWEIHGNIWDDEFKLTDG-ENVRAEVSKKW-----FSWRDTYHLQVAPDE  141 (159)
T ss_pred             -EEEEEEEEEEE--eeeEEEc--C-----CCeEEecceeceEEEEecC-Cceehhheeee-----EeccceEEEEEcCch
Confidence             99999999874  7888864  3     3699999999999999976 57999999998     999999999999999


Q ss_pred             CHHHHHHHHHHHhhhhcc
Q 028663          187 DLSLVMGLLVVYGLINSL  204 (205)
Q Consensus       187 D~ali~alvv~lD~i~~~  204 (205)
                      |.++|++++|+||++.++
T Consensus       142 ~a~lii~i~VaLD~v~~~  159 (159)
T COG4894         142 DALLIIAIAVALDMVLYN  159 (159)
T ss_pred             hhHHHHHHHHHHHHHhcC
Confidence            999999999999998753

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.62  E-value=1.1e-13  Score=115.25  Aligned_cols=164  Identities=15%  Similarity=0.146  Sum_probs=125.1

Q ss_pred             eEEEEEEEEeEE---e----CCCeEEEeCCCCEEEEEeccCCC---------CCCeEEEEcCCCCeEEEEEecccccc--
Q 028663           26 ETFTIWMKSLVL---N----GKGCTVFDSDGHIMYRVDNYNSK---------SNNEVYLMDFDGGVLFTILKKRYFRL--   87 (205)
Q Consensus        26 ~~l~v~~k~~~~---s----~d~ftV~D~~G~~vf~V~g~~~s---------~~~~~~l~D~~G~~L~~i~~k~~~s~--   87 (205)
                      -.+.|.++...+   .    .+.|.|+|.+|+.+|.+....-.         .+-+..++|..|+++++|++..- ..  
T Consensus        22 ~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~-c~~C  100 (221)
T PF03803_consen   22 DQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFK-CCSC  100 (221)
T ss_pred             CEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCc-ceec
Confidence            356666666432   2    26899999999999988655211         13456889999999999998764 22  


Q ss_pred             ----cceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeEEEEecCCCCCceEEEEee------CCCeeEEEEcCCCC
Q 028663           88 ----FGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSL------NGKCACKIVDNFGD  157 (205)
Q Consensus        88 ----~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~~~~~~~~i~G~------~~~~~~~I~~~~g~  157 (205)
                          ..+.+++.++|       +++.+|++++.++  +++++|+-+.   ...-+.|+|.      +.+..|.|++.+|+
T Consensus       101 ~~~~~~~~~V~~p~g-------~~iG~I~q~~~~~--~~~f~I~d~~---~~~~~~I~gp~~~~~~~~~~~F~I~~~~~~  168 (221)
T PF03803_consen  101 CPCCLQEMEVESPPG-------NLIGSIRQPFSCC--RPNFDIFDAN---GNPIFTIKGPCCCCSCCCDWEFEIKDPNGQ  168 (221)
T ss_pred             ccccceeEEEecCCC-------cEEEEEEEcCccc--ceEEEEEECC---CceEEEEeCCcceeccccceeeeeecccCc
Confidence                35666766555       5999999998874  6888887433   2456888887      46788999998889


Q ss_pred             EEEEEEeeee--ccceeeeeceEEEEEeCCCCH---HHHHHHHHHHhhhh
Q 028663          158 TVAELKRKEA--RSGVVFGEDVLSMEVKPCVDL---SLVMGLLVVYGLIN  202 (205)
Q Consensus       158 ~VA~v~rk~~--~~~~~~~~dty~l~V~pgvD~---ali~alvv~lD~i~  202 (205)
                      .||+|+|+|.  ....+...|.|.|+..+..|.   |+++|.++.||.+.
T Consensus       169 ~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~  218 (221)
T PF03803_consen  169 EVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY  218 (221)
T ss_pred             EEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence            9999999996  334667899999999998876   79999999999875

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=6.5e-06  Score=64.17  Aligned_cols=103  Identities=14%  Similarity=0.088  Sum_probs=74.8

Q ss_pred             CCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEe----eC
Q 028663           22 SSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYK----ST   97 (205)
Q Consensus        22 ~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~----~d   97 (205)
                      ...++++.|.=+.++. +|.|+|+|+.|..++.++.+..++..+..|.|++|+ ++.+++|.. .++++|++-.    .+
T Consensus        26 ~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~t-f~Rdk~e~d~~~~eih  102 (159)
T COG4894          26 RDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVT-FSRDKFEIDGLNWEIH  102 (159)
T ss_pred             CCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEE-EEeeeEEEcCCCeEEe
Confidence            4457788887655555 788999999999999999999999999999999999 899999987 5588888742    01


Q ss_pred             Cc---c---cCCCCCceEEEEeeeeecccCCeeEEEEe
Q 028663           98 GK---V---ETNTKRPDFLVRQSFNMLRRNSDCEVILG  129 (205)
Q Consensus        98 g~---~---~~~~~~~lf~vkk~~~~~~~k~~~~V~l~  129 (205)
                      |+   +   -...++..++|.|++  |..++.|.+.++
T Consensus       103 GNi~d~efkl~dg~~~~aeVsKkw--f~~rdTY~l~va  138 (159)
T COG4894         103 GNIWDDEFKLTDGENVRAEVSKKW--FSWRDTYHLQVA  138 (159)
T ss_pred             cceeceEEEEecCCceehhheeee--EeccceEEEEEc
Confidence            11   0   011334666777665  234566665543

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=97.79  E-value=0.00013  Score=59.25  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=50.2

Q ss_pred             CCCCEEEEEeccCC-CCCCeEEEEcCCCCeEEEEEe-cccccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCee
Q 028663           47 SDGHIMYRVDNYNS-KSNNEVYLMDFDGGVLFTILK-KRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDC  124 (205)
Q Consensus        47 ~~G~~vf~V~g~~~-s~~~~~~l~D~~G~~L~~i~~-k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~  124 (205)
                      +.....++|.-+.. ..++.+.++|.+|++++++.. +.+ ++.++..++.++|       ++|++|+++.  ++.+++|
T Consensus        10 ~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~-s~~~~~~l~D~~G-------~~L~~i~~k~--~~l~~~w   79 (187)
T PF04525_consen   10 SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFF-SIGKKRTLMDASG-------NPLFTIRRKL--FSLRPTW   79 (187)
T ss_dssp             -SS-EEEEEE----------EEEEETTS-EEEEEE--SCT-TBTTEEEEE-TTS--------EEEEEE----------EE
T ss_pred             CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEeccc-CCCCEEEEECCCC-------CEEEEEEeee--cccceEE
Confidence            46678888955544 458999999999999999999 888 9999999998666       4999999864  3457999


Q ss_pred             EEEEecCC-CCCceEEEEee
Q 028663          125 EVILGLDN-NHPYNYAMTSL  143 (205)
Q Consensus       125 ~V~l~~~~-~~~~~~~i~G~  143 (205)
                      +++.++.. ++.+-++|+-.
T Consensus        80 ~i~~~~~~~~~~~i~tvkk~   99 (187)
T PF04525_consen   80 EIYRGGGSEGKKPIFTVKKK   99 (187)
T ss_dssp             EEEETT---GGGEEEEEE--
T ss_pred             EEEECCCCccCceEEEEEEe
Confidence            99876542 22345777644

; PDB: 1ZXU_A 2Q4M_A.

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=97.72  E-value=0.00058  Score=59.51  Aligned_cols=149  Identities=14%  Similarity=0.069  Sum_probs=96.7

Q ss_pred             CCeEEEeCCCCEEEEEeccCC---------CCCCeEEEEcCCCCeEEEEEeccccccc--------ceEEEEeeCCcccC
Q 028663           40 KGCTVFDSDGHIMYRVDNYNS---------KSNNEVYLMDFDGGVLFTILKKRYFRLF--------GFWEGYKSTGKVET  102 (205)
Q Consensus        40 d~ftV~D~~G~~vf~V~g~~~---------s~~~~~~l~D~~G~~L~~i~~k~~~s~~--------~~w~v~~~dg~~~~  102 (205)
                      +.|.|.|.+|+.+|.+--..-         ..+-...++|.-|++++++++... ...        ...++..+.+    
T Consensus        99 NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~-c~~~~c~~~~~~~~~v~~p~~----  173 (292)
T KOG0621|consen   99 NRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFP-CCSSACALCLAQEIEIQSPPM----  173 (292)
T ss_pred             cEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEecccc-ccccccccccccEEEEEcCCC----
Confidence            789999999998884432211         124567899999999999999874 322        2222322222    


Q ss_pred             CCCCceEEEEeeeeecccCCeeEEEEecCCCCCceEEEEee-------CCCeeEE-EEcCCCCEEEEEEeeee--cccee
Q 028663          103 NTKRPDFLVRQSFNMLRRNSDCEVILGLDNNHPYNYAMTSL-------NGKCACK-IVDNFGDTVAELKRKEA--RSGVV  172 (205)
Q Consensus       103 ~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~~~~~~~~i~G~-------~~~~~~~-I~~~~g~~VA~v~rk~~--~~~~~  172 (205)
                         -.+-+|.+.+...  .++++|-  +. +....+.|+|.       +.+..+. +...+|++|++|.|+|.  ..+.+
T Consensus       174 ---~~lG~v~q~~~~~--~~~f~i~--~~-~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~f  245 (292)
T KOG0621|consen  174 ---GLLGKVLQTWGCV--NPNFHLW--DR-DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAF  245 (292)
T ss_pred             ---ceEEEEEEeeccc--cceEEEE--cc-cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhhe
Confidence               3566666655332  3555543  21 12234666665       3333333 44456899999999996  55677


Q ss_pred             eeeceEEEEEeCCCCH---HHHHHHHHHHhhh
Q 028663          173 FGEDVLSMEVKPCVDL---SLVMGLLVVYGLI  201 (205)
Q Consensus       173 ~~~dty~l~V~pgvD~---ali~alvv~lD~i  201 (205)
                      ...|+|.|...-..|.   ++++|-++-||.+
T Consensus       246 TDad~f~v~FPldLdvk~kavllga~flID~~  277 (292)
T KOG0621|consen  246 TDADTFVVHFPLDLDVKLKALLLGSTFLIDYM  277 (292)
T ss_pred             eccceeeEecCCcCCHHHHhhhhhheeeEEEE
Confidence            8899999988877776   6788887777754

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=96.06  E-value=0.046  Score=45.24  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=53.4

Q ss_pred             eEEEeCCCCEEEEEeccCCC------CCCeEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCCceEEEEeee
Q 028663           42 CTVFDSDGHIMYRVDNYNSK------SNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSF  115 (205)
Q Consensus        42 ftV~D~~G~~vf~V~g~~~s------~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~  115 (205)
                      ..|+|.+|+.|++++-...=      ...+..+.++.|++|.+|+++.- .+.++++++.++|       +++++|+.+.
T Consensus        78 ~~i~D~~g~~vl~i~Rp~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~-~~~~~f~I~d~~~-------~~~~~I~gp~  149 (221)
T PF03803_consen   78 MHIYDNYGREVLTIERPFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFS-CCRPNFDIFDANG-------NPIFTIKGPC  149 (221)
T ss_pred             EEEEecCCCEEEEEEcCCcceecccccceeEEEecCCCcEEEEEEEcCc-ccceEEEEEECCC-------ceEEEEeCCc
Confidence            36899999999999976431      13677888999999999999886 6899999999544       4789998775

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	5e-41

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  137 bits (347), Expect = 5e-41
 Identities = 34/202 (16%), Positives = 82/202 (40%), Gaps = 9/202 (4%)

Query: 6   HPRGLLSSSSSA----PCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSK 61
            P G  +  +      P Y +       I  K + L      + D +G+++++V      
Sbjct: 14  GPSGAPTPQAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFG 73

Query: 62  SNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRN 121
            +++  L+D  G  + T+ +++   +   W+ ++      T+ +   + V++S  +  + 
Sbjct: 74  LHDKRVLLDGSGTPVVTL-REKMVSMHDRWQVFRGGS---TDQRDLLYTVKRSSMLQLKT 129

Query: 122 SDCEVILGLDNNHPYNYAMTSLNGKCACKIVDNF-GDTVAELKRKEARSGVVFGEDVLSM 180
                +    +    ++ +     + +C +        VA++ RK     V  G+D  S+
Sbjct: 130 KLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSV 189

Query: 181 EVKPCVDLSLVMGLLVVYGLIN 202
            V P VD + +  L+V+   +N
Sbjct: 190 TVYPNVDYAFIASLVVILDDVN 211

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.09

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=9.8e-43  Score=288.77  Aligned_cols=182  Identities=21%  Similarity=0.357  Sum_probs=141.4

Q ss_pred             CcccCCcceEEEEEEEEeEEeCCCeEEEeCCCCEEEEEeccCCCCCCeEEEEcCCCCeEEEEEecccccccceEEEEeeC
Q 028663           18 PCYFSSKRETFTIWMKSLVLNGKGCTVFDSDGHIMYRVDNYNSKSNNEVYLMDFDGGVLFTILKKRYFRLFGFWEGYKST   97 (205)
Q Consensus        18 ~~~~~~~~~~l~v~~k~~~~s~d~ftV~D~~G~~vf~V~g~~~s~~~~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~d   97 (205)
                      ++||+.+++.|+||+|.+++++++|+|+|++|+++|+|+|+.++++.++.|+|++|++|++|++|.+ +++++|++|.  
T Consensus        30 ~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~-~~~~~~~v~~--  106 (217)
T 1zxu_A           30 PKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMV-SMHDRWQVFR--  106 (217)
T ss_dssp             GGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC-------CEEEEEE--
T ss_pred             ccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEcccc-ccCcEEEEEc--
Confidence            5799999999999999999998899999999999999999998999999999999999999999999 9999999999  


Q ss_pred             CcccCCCCCceEEEEeeeeecccCCeeEEEEecCC-CCCceEEEEeeCCCeeEEEEcCC-CCEEEEEEeeeeccceeeee
Q 028663           98 GKVETNTKRPDFLVRQSFNMLRRNSDCEVILGLDN-NHPYNYAMTSLNGKCACKIVDNF-GDTVAELKRKEARSGVVFGE  175 (205)
Q Consensus        98 g~~~~~~~~~lf~vkk~~~~~~~k~~~~V~l~~~~-~~~~~~~i~G~~~~~~~~I~~~~-g~~VA~v~rk~~~~~~~~~~  175 (205)
                      ++ ..++++++|+||+++. ++.+++++|++++++ ++.++|+|+|+|++++|+|++++ |++||+|+|+++++++++++
T Consensus       107 ~~-~~~~~~~i~~vrk~~~-~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk~~~~~~~~~~  184 (217)
T 1zxu_A          107 GG-STDQRDLLYTVKRSSM-LQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGK  184 (217)
T ss_dssp             TT-CCCGGGEEEEEEC--------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC--------CB
T ss_pred             CC-CCCCCcEEEEEEEecc-ccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEeeeeccccccCC
Confidence            43 2234578999999842 245789999887543 34678999999999999999876 79999999998888899999


Q ss_pred             ceEEEEEeCCCCHHHHHHHHHHHhhhhcc
Q 028663          176 DVLSMEVKPCVDLSLVMGLLVVYGLINSL  204 (205)
Q Consensus       176 dty~l~V~pgvD~ali~alvv~lD~i~~~  204 (205)
                      |+|.|+|+|++|.+|+||++++||++++.
T Consensus       185 D~y~l~V~p~~D~aliialvv~iD~~~~~  213 (217)
T 1zxu_A          185 DNFSVTVYPNVDYAFIASLVVILDDVNRE  213 (217)
T ss_dssp             CSEEEEECTTSBHHHHHHHHHHHHHHHC-
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999763

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.09  E-value=3.5e-05  Score=62.91  Aligned_cols=98  Identities=13%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             CCCCEEEEEeccCCCCCC-eEEEEcCCCCeEEEEEecccccccceEEEEeeCCcccCCCCCceEEEEeeeeecccCCeeE
Q 028663           47 SDGHIMYRVDNYNSKSNN-EVYLMDFDGGVLFTILKKRYFRLFGFWEGYKSTGKVETNTKRPDFLVRQSFNMLRRNSDCE  125 (205)
Q Consensus        47 ~~G~~vf~V~g~~~s~~~-~~~l~D~~G~~L~~i~~k~~~s~~~~w~v~~~dg~~~~~~~~~lf~vkk~~~~~~~k~~~~  125 (205)
                      +.+...|.|+-+.+++.+ +..++|.+|+.++++..+.+ ++..+..++..+|       +++++|+++..  +..++|+
T Consensus        34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~-~~~~~~~l~D~~G-------~~l~~i~rk~~--~~~~~~~  103 (217)
T 1zxu_A           34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVF-GLHDKRVLLDGSG-------TPVVTLREKMV--SMHDRWQ  103 (217)
T ss_dssp             CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSST-TCCSEEEEECTTS-------CEEEEEEC--------CEEE
T ss_pred             CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEcccc-CCCCEEEEECCCC-------CEEEEEEcccc--ccCcEEE
Confidence            468999999999888876 99999999999999999988 8899999998555       59999999753  3468999


Q ss_pred             EEEecCCC-CCceEEEEee--C-CCeeEEEEcC
Q 028663          126 VILGLDNN-HPYNYAMTSL--N-GKCACKIVDN  154 (205)
Q Consensus       126 V~l~~~~~-~~~~~~i~G~--~-~~~~~~I~~~  154 (205)
                      |+.+.... ..+-++|+-.  + +...|.|...
T Consensus       104 v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~  136 (217)
T 1zxu_A          104 VFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLG  136 (217)
T ss_dssp             EEETTCCCGGGEEEEEEC-------CCEEEEET
T ss_pred             EEcCCCCCCCcEEEEEEEeccccCCCeEEEEEC
Confidence            98654311 1235666533  2 3556788754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	1e-38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	97.95