Citrus Sinensis ID: 028691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MMEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Secondary Structure (PSIPRED)
cccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHcccccccccEEEEEEccccccccccccEEcccEEccccccccccccccccccHccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mmedqeekgnaengigrqkqvKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKvseqdvdsmesqpcftlckwassdngerssgeekslspqlrhrnnsqlsekvstrtgtplilvDQQRQKSLSVFGvlvspklrsAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Flexible Loop (DISEMBL)
mmedqeekgnaengigrqkqVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWassdngerssgeekslspqlrhrnnsqlsekvstrtgtplILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Low Complexity Region (SEG)
MMEDQEEKGNAENGIGRQKQVKDEYLLQFldsldgyltlldslsstlsQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Disordered region (IsUnstruct)
*********************KDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL*************PCFTLCKW***************************************LILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE***********
Disordered Region (DISOPRED)
***********************EYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHA*****ING*LLDLKVHAAAT**************************************************************************SVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFE****E******
Disordered Region (DISEMBL)
************NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL************QPCFTLCKWAS*********************************TGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Disordered Region (DISPRO)
*******************QVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFT*CKWAS**********************************************KSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKEL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENTNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q5EAR6	206	Coiled-coil domain-contai	yes	no	0.780	0.776	0.255	2e-08
Q8VE99	180	Coiled-coil domain-contai	yes	no	0.721	0.822	0.287	5e-06
Q96NT0	180	Coiled-coil domain-contai	yes	no	0.678	0.772	0.299	8e-06
Q3SZB5	180	Coiled-coil domain-contai	no	no	0.721	0.822	0.269	0.0003

>sp|Q5EAR6|CC115_DANRE Coiled-coil domain-containing protein 115 OS=Danio rerio GN=ccdc115 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 20/180 (11%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRING----------ALLD 72
           DE LL F++ L+        L+S + +GW  +A AR++MG  +++           A ++
Sbjct: 10  DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69

Query: 73  LKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSL-SPQLRHRNNSQL 131
             +    T+    E+  +  E Q   T+      D G + +G  + + + Q   +   Q 
Sbjct: 70  TSLLEGGTAEFKCERSENKAEEQKTKTI-----EDIGAKETGLRRRVHTKQKEVKEGEQD 124

Query: 132 SEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLS 191
           +++V T+T +P      + +  L  FG+LV   L+ AQ +F+  +   VEIA+L +T+L+
Sbjct: 125 TDEVKTKTDSP----TPEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTILA 180

Danio rerio (taxid: 7955)

>sp|Q8VE99|CC115_MOUSE Coiled-coil domain-containing protein 115 OS=Mus musculus GN=Ccdc115 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 19/167 (11%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D   LQ L  L+       +L++ + +GWL LA AR+AMGA  + G L     +A+    
Sbjct: 11  DSKCLQLLSDLEELEAKRAALNARVEEGWLSLAKARYAMGAKSV-GPL----QYASRMEP 65

Query: 83  KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTP 142
           +V  +  ++ +    F + K A +   E     E S    LR R     ++++    G+ 
Sbjct: 66  QVCVRASEAQDGPQTFRVIK-ADAQTPEEVGPSEAS----LRRRKGPTKTKEL----GSA 116

Query: 143 LILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 189
           ++  D      L+ FG+LV   LR AQ SF   L+   +IA+L T +
Sbjct: 117 VVPQD-----PLNWFGILVPHSLRQAQASFRDGLQLAADIASLQTRI 158

Mus musculus (taxid: 10090)

>sp|Q96NT0|CC115_HUMAN Coiled-coil domain-containing protein 115 OS=Homo sapiens GN=CCDC115 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 28/167 (16%)

Query: 26  LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
           LL  L+ L+G  T+L++    + +GWL LA AR+AMGA  + G L     +A+    +V 
Sbjct: 17  LLGDLEELEGKRTVLNA---RVEEGWLSLAKARYAMGAKSV-GPL----QYASHMEPQVC 68

Query: 86  EQDVDSMESQPCFTLCK---WASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTP 142
               ++ E    F + +    A  + G R +G        LR R            T TP
Sbjct: 69  LHASEAQEGLQKFKVVRAGVHAPEEVGPREAG--------LRRRKGP---------TKTP 111

Query: 143 LILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 189
                +  Q  L+ FG+LV   LR AQ SF   L+   +IA+L   +
Sbjct: 112 EPESSEAPQDPLNWFGILVPHSLRQAQASFRDGLQLAADIASLQNRI 158

Homo sapiens (taxid: 9606)

>sp|Q3SZB5|CC115_BOVIN Coiled-coil domain-containing protein 115 OS=Bos taurus GN=CCDC115 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 19/167 (11%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D  LLQ L  L+       +L++ + +GWL L+ AR+AMGA  + G L     +A+    
Sbjct: 11  DFVLLQLLGDLEQLEAKRQALNARVEEGWLSLSKARYAMGAKSV-GPL----QYASHMEP 65

Query: 83  KVSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTP 142
           +V     +S +    F + + A +   E     E +L    R +   +  E  S+     
Sbjct: 66  QVRVGTSESQDGLQKFWMVR-AGTQTPEEVGSREAALR---RRKGLPRTPEPDSSPAP-- 119

Query: 143 LILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 189
                   Q  L  FG+LV   LR AQ SF   L+   ++A+L + +
Sbjct: 120 --------QNPLKWFGILVPHSLRQAQASFREGLQLAADMASLQSRI 158

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
225457584	230	PREDICTED: uncharacterized protein LOC10	0.980	0.873	0.571	2e-60
147852293	225	hypothetical protein VITISV_041592 [Viti	0.980	0.893	0.579	2e-60
224086062	220	predicted protein [Populus trichocarpa]	0.970	0.904	0.582	7e-55
297850496	215	hypothetical protein ARALYDRAFT_472313 [	0.858	0.818	0.576	9e-48
15218031	215	uncharacterized protein [Arabidopsis tha	0.941	0.897	0.514	2e-46
449455627	245	PREDICTED: uncharacterized protein LOC10	0.868	0.726	0.575	8e-46
255539264	212	conserved hypothetical protein [Ricinus	0.814	0.787	0.554	2e-42
388502112	207	unknown [Lotus japonicus]	0.829	0.821	0.5	9e-41
356572146	162	PREDICTED: coiled-coil domain-containing	0.775	0.981	0.508	3e-38
388517171	199	unknown [Medicago truncatula]	0.897	0.924	0.525	9e-36

>gi|225457584|ref|XP_002273059.1| PREDICTED: uncharacterized protein LOC100263247 [Vitis vinifera] gi|297745570|emb|CBI40735.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/224 (57%), Positives = 162/224 (72%), Gaps = 23/224 (10%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           MEDQ++    EN +  ++  ++E ++ FLDS+D YLTL+DSLSSTL QGWLELASARH+M
Sbjct: 1   MEDQDKARTCENQLEEEQLDEEENVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSM 60

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGE------ 115
           GASRI+ +L DLK+H+AATSL+V+E DVDS  +QP FTLCKWASSDNG+  SGE      
Sbjct: 61  GASRISSSLFDLKLHSAATSLRVTEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGD 120

Query: 116 ---EKSLSPQLRHRNNSQLSE-----------KVSTRTGTPLIL---VDQQRQKSLSVFG 158
              +KS+S QLR+R  SQ  E           K  T  G+PL L   V +QR KSLSVFG
Sbjct: 121 ELQKKSVSSQLRYRGTSQFDEPQEIQEKSPTCKSPTSNGSPLSLDSPVQKQRHKSLSVFG 180

Query: 159 VLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELEN 202
            LVSPKLR+AQ SFE ALET+VEIAN+ ++MLS F+QV K++E+
Sbjct: 181 TLVSPKLRAAQFSFETALETIVEIANMRSSMLSAFDQVQKDIES 224

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852293|emb|CAN80128.1| hypothetical protein VITISV_041592 [Vitis vinifera]

 Score =  237 bits (604), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 127/219 (57%), Positives = 163/219 (74%), Gaps = 18/219 (8%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           MEDQ++   +EN +  ++  ++E ++ FLDS+D YLTL+DSLSSTL QGWLELASARH+M
Sbjct: 1   MEDQDKARTSENQLEEEQLDEEENVVTFLDSMDAYLTLIDSLSSTLRQGWLELASARHSM 60

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNGERSSGE------ 115
           GASRI+ +L DLK+H+AATSL+V+E DVDS  +QP FTLCKWASSDNG+  SGE      
Sbjct: 61  GASRISSSLFDLKLHSAATSLRVTEDDVDSKMNQPHFTLCKWASSDNGKCCSGEAKFDGD 120

Query: 116 ---EKSLSPQLRHRNNSQ------LSEKVSTRTGTPLIL---VDQQRQKSLSVFGVLVSP 163
              +KS+S QLR+R  SQ      + EK  T  G+PL L   V +QR KSLSVFG LVSP
Sbjct: 121 ELQKKSVSXQLRYRGTSQXDEPQEIQEKSPTSNGSPLSLDSPVQKQRHKSLSVFGTLVSP 180

Query: 164 KLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELEN 202
           KLR+AQ SFE ALE +VEIAN+ ++MLS F+QV K++E+
Sbjct: 181 KLRAAQFSFETALEXIVEIANMRSSMLSAFDQVQKDIES 219

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086062|ref|XP_002307800.1| predicted protein [Populus trichocarpa] gi|222857249|gb|EEE94796.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 124/213 (58%), Positives = 159/213 (74%), Gaps = 14/213 (6%)

Query: 2   MEDQEEKGNAENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAM 61
           ME+QEE    E  I  +K V DE +L+F+DS D YLTLLDSLSSTL QGWL+LA AR +M
Sbjct: 1   MEEQEEATGFE--IEVRKVVGDEDVLRFMDSTDSYLTLLDSLSSTLRQGWLDLAIARQSM 58

Query: 62  GASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNG-----ERSSGEE 116
           GASRINGALLD K+H+AATS++V ++DVDSME+QP F L KWAS  +G     E+  GE+
Sbjct: 59  GASRINGALLDHKLHSAATSVQVDQEDVDSMEAQPRFILRKWASVADGKQCYEEQKLGED 118

Query: 117 ----KSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQ---QRQKSLSVFGVLVSPKLRSAQ 169
               KS S QLRHR +SQLSE+ ++ +G  L + DQ   +R K LS+FG L+SPKLR+AQ
Sbjct: 119 KLPGKSGSLQLRHRGDSQLSEEKTSESGAQLDVDDQVQKERAKLLSMFGTLISPKLRAAQ 178

Query: 170 LSFERALETLVEIANLHTTMLSMFEQVHKELEN 202
           LSFE ALETLV+IAN+ + MLS +++V KEL++
Sbjct: 179 LSFETALETLVKIANMRSAMLSSYDRVRKELDH 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850496|ref|XP_002893129.1| hypothetical protein ARALYDRAFT_472313 [Arabidopsis lyrata subsp. lyrata] gi|297338971|gb|EFH69388.1| hypothetical protein ARALYDRAFT_472313 [Arabidopsis lyrata subsp. lyrata]

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 136/189 (71%), Gaps = 13/189 (6%)

Query: 19  KQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAA 78
           K+  DE +LQFLDSLDGYLTL+DSL+S L +GW +LASARH+MG  RIN  LLDLK H A
Sbjct: 26  KEGGDENVLQFLDSLDGYLTLMDSLNSKLREGWFDLASARHSMGTLRINSTLLDLKYHPA 85

Query: 79  ATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGERSSGEEKS-----LSPQLRHRNNSQ 130
           A++L+V++Q+V+S+ S P F L KWAS   S  G+  S +  S     LSPQLRHR  S+
Sbjct: 86  ASTLQVTDQEVESLGSVPHFALSKWASKGGSGKGKDLSTDTDSEIGSPLSPQLRHRGFSE 145

Query: 131 LSEKVSTRTGTPLIL---VDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHT 187
             EK S +  T L+    + ++R KSLSVFG LVSPKLR AQLSFE ALETLVEIAN+  
Sbjct: 146 --EKPSAKDETILVADEEIKKERAKSLSVFGGLVSPKLRGAQLSFETALETLVEIANMRA 203

Query: 188 TMLSMFEQV 196
           +MLS FE++
Sbjct: 204 SMLSAFERI 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218031|ref|NP_173500.1| uncharacterized protein [Arabidopsis thaliana] gi|8886946|gb|AAF80632.1|AC069251_25 F2D10.26 [Arabidopsis thaliana] gi|38454150|gb|AAR20769.1| At1g20770 [Arabidopsis thaliana] gi|41349930|gb|AAS00350.1| At1g20770 [Arabidopsis thaliana] gi|332191899|gb|AEE30020.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/214 (51%), Positives = 144/214 (67%), Gaps = 21/214 (9%)

Query: 2   MEDQEEKGNAENGIGRQKQVK--------DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLE 53
           M +  E+G+    + ++ +VK        DE +LQFLDSLDGYLTL+DS++S L +GW +
Sbjct: 1   MAEIYEEGDESVDVNKESEVKTELGKGGGDENVLQFLDSLDGYLTLMDSVNSKLREGWFD 60

Query: 54  LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGE 110
           LASARH+MG  RIN  LLDLK H A+++L+V++QDV+S+ S P F L KWAS   S  G+
Sbjct: 61  LASARHSMGTLRINSTLLDLKYHPASSTLQVTDQDVESLGSVPHFALSKWASKGGSRKGK 120

Query: 111 RSSGEEKS-----LSPQLRHRNNSQLSEKVSTRTGTPLIL---VDQQRQKSLSVFGVLVS 162
             S +  S     LSPQLRHR  S+  EK S +  T L     + ++R KSLSVFG LVS
Sbjct: 121 DFSTDTDSEIGSPLSPQLRHRGVSE--EKPSAKDETVLAADEEIKKERAKSLSVFGGLVS 178

Query: 163 PKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 196
           PKLR AQ SFE ALETLVEIAN+  +M+S FE++
Sbjct: 179 PKLRGAQQSFETALETLVEIANMRASMISAFERI 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455627|ref|XP_004145554.1| PREDICTED: uncharacterized protein LOC101206061 [Cucumis sativus] gi|449485105|ref|XP_004157071.1| PREDICTED: uncharacterized LOC101206061 [Cucumis sativus]

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 133/193 (68%), Gaps = 15/193 (7%)

Query: 26  LLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVS 85
           LLQFLDS D YL LLD+LS+TL QGW ELASARH+MG SRI+ ALLD+K H+AATSL+V 
Sbjct: 40  LLQFLDSTDDYLNLLDALSATLRQGWFELASARHSMGTSRISTALLDMKNHSAATSLRVD 99

Query: 86  EQDVDSMESQPCFTLCKWASSDNGERSSGEEK--------SLSPQLRHRNNSQLSE---K 134
           E+D  S+  QP   L KW SS+ G+ S GEEK        S SPQLR RN S LS+   K
Sbjct: 100 ERDDGSVGMQPFINLRKWTSSEGGD-SLGEEKYNDKLQRESGSPQLRQRNVSDLSDNLGK 158

Query: 135 VSTRTGTPLILVDQ---QRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLS 191
            S +    LI+ DQ   +R ++LS FG LVSPKLR AQLSFE ALE +VEIAN    MLS
Sbjct: 159 SSLKKEDALIVDDQVQKERSRTLSTFGTLVSPKLRLAQLSFENALELIVEIANKRIAMLS 218

Query: 192 MFEQVHKELENTN 204
            F++V K  E+T+
Sbjct: 219 SFDEVKKGSEDTS 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539264|ref|XP_002510697.1| conserved hypothetical protein [Ricinus communis] gi|223551398|gb|EEF52884.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 130/184 (70%), Gaps = 17/184 (9%)

Query: 23  DEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSL 82
           D+ +LQFLDS+D YLTL DSLSSTL QGWLELASARH+MGA R+N +LLDLK H A+TSL
Sbjct: 35  DDNVLQFLDSVDSYLTLFDSLSSTLRQGWLELASARHSMGALRLNSSLLDLKSHPASTSL 94

Query: 83  KVSEQDVDSMESQPCFTLCKWAS-SDNGERSSGE---EKSLSPQLRHRNNS--QLSEKVS 136
           ++++      E +P F L KW S  D  E+++ +   EKS +PQL     S  Q S K  
Sbjct: 95  QLTKH----HEGEPQFILRKWLSLGDCDEQNTNDDLLEKSGTPQLSEEETSPKQASSKAD 150

Query: 137 TRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 196
            +       V ++R +SLSVFG LVSPKLR+AQLSFE ALET+VEIAN+ + MLS F++V
Sbjct: 151 DK-------VQKERSRSLSVFGTLVSPKLRAAQLSFETALETVVEIANMRSAMLSAFDRV 203

Query: 197 HKEL 200
           H+EL
Sbjct: 204 HEEL 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502112|gb|AFK39122.1| unknown [Lotus japonicus]

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 94/188 (50%), Positives = 129/188 (68%), Gaps = 18/188 (9%)

Query: 21  VKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAAT 80
            +D+  LQF+DS+  YL+L D+LSSTL QGWL+LASARH+MGASRIN +LLDLK H AAT
Sbjct: 31  AEDKLALQFMDSVHNYLSLFDALSSTLGQGWLDLASARHSMGASRINSSLLDLKFHPAAT 90

Query: 81  SLKVSEQDVDSMESQPCFTLCKWASSDNG----ERSSGEEKSLSPQLRHRNN-SQLSEKV 135
           + K+    V     QPCF L KW SS++     E  +G+ +  S ++   NN S L++  
Sbjct: 91  TSKI----VKYQGEQPCFMLRKWVSSEHENSQLEDKNGKLQDSSAEVTAANNLSGLADDE 146

Query: 136 STRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQ 195
                     V ++R KSLSVFG+L+SPKLRS QLSFE+ALETL+E+AN+ ++++  F Q
Sbjct: 147 E---------VQKERSKSLSVFGILISPKLRSTQLSFEKALETLIELANMRSSLIHSFHQ 197

Query: 196 VHKELENT 203
           +H+E E+T
Sbjct: 198 LHRETEDT 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572146|ref|XP_003554231.1| PREDICTED: coiled-coil domain-containing protein 115 [Glycine max]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 120/175 (68%), Gaps = 16/175 (9%)

Query: 30  LDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDV 89
           +DS+D YL+L D++SSTL QGW +LASARH+MGASRIN +LLDLK H+AAT+LK++  D 
Sbjct: 1   MDSMDNYLSLFDAVSSTLRQGWFDLASARHSMGASRINSSLLDLKFHSAATTLKITNYD- 59

Query: 90  DSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRN-NSQLSEKVSTRTGTPLILVDQ 148
               +QPCF L KW SS++           S QL   N  SQ    V +        V  
Sbjct: 60  ---GTQPCFMLRKWVSSEHE----------SSQLEDENVQSQDGSSVKSSGLVENAEVQN 106

Query: 149 QRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQVHKELENT 203
           +R KSLS+FGVL+SPKLR++QLSFE+ALETL+EIAN+ +++L  F Q+ + +E+T
Sbjct: 107 ERSKSLSIFGVLISPKLRASQLSFEKALETLIEIANMQSSLLYSFHQL-RRVEDT 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517171|gb|AFK46647.1| unknown [Medicago truncatula]

 Score =  155 bits (392), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 136/194 (70%), Gaps = 10/194 (5%)

Query: 13  NGIGRQKQVKDE--YLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGAL 70
           NG   +  +KDE    LQF+DSL  YL+L DSLSSTL QGWLELASAR++MG SR+N +L
Sbjct: 11  NGEEEEVVIKDEDKVALQFMDSLHNYLSLSDSLSSTLRQGWLELASARYSMGTSRVNSSL 70

Query: 71  LDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWASSDNG-ERSSGEEKSLSPQLRHRNNS 129
           LDLK H+AAT LK++E +     +QP FTL KW SS++  E +  E K+  PQ    N+ 
Sbjct: 71  LDLKFHSAATILKITENEDG---TQPHFTLQKWVSSEHELESTKLEYKNEQPQ--DSNSI 125

Query: 130 QLSEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTM 189
           + SE +          V ++R KSLSVFGVL+SPKLR+ QLSFE+ALETL+EIANL +++
Sbjct: 126 KSSENLMGLADND--EVQKERHKSLSVFGVLISPKLRATQLSFEKALETLIEIANLRSSL 183

Query: 190 LSMFEQVHKELENT 203
           L  F Q+++E+E+T
Sbjct: 184 LHSFSQLNQEVEDT 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2030447	215	AT1G20770 "AT1G20770" [Arabido	0.941	0.897	0.448	3.1e-35
ZFIN|ZDB-GENE-050227-20	206	zgc:113121 "zgc:113121" [Danio	0.848	0.844	0.236	3.3e-07

TAIR|locus:2030447 AT1G20770 "AT1G20770" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 96/214 (44%), Positives = 127/214 (59%)

Query:     2 MEDQEEKGNAENGIGRQKQVK--------DEYLLQFXXXXXXXXXXXXXXXXXXXQGWLE 53
             M +  E+G+    + ++ +VK        DE +LQF                   +GW +
Sbjct:     1 MAEIYEEGDESVDVNKESEVKTELGKGGGDENVLQFLDSLDGYLTLMDSVNSKLREGWFD 60

Query:    54 LASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSMESQPCFTLCKWAS---SDNGE 110
             LASARH+MG  RIN  LLDLK H A+++L+V++QDV+S+ S P F L KWAS   S  G+
Sbjct:    61 LASARHSMGTLRINSTLLDLKYHPASSTLQVTDQDVESLGSVPHFALSKWASKGGSRKGK 120

Query:   111 RSSGEEKS-----LSPQLRHRNNSQLSEKVSTRTGTPLIL---VDQQRQKSLSVFGVLVS 162
               S +  S     LSPQLRHR  S+  EK S +  T L     + ++R KSLSVFG LVS
Sbjct:   121 DFSTDTDSEIGSPLSPQLRHRGVSE--EKPSAKDETVLAADEEIKKERAKSLSVFGGLVS 178

Query:   163 PKLRSAQLSFERALETLVEIANLHTTMLSMFEQV 196
             PKLR AQ SFE ALETLVEIAN+  +M+S FE++
Sbjct:   179 PKLRGAQQSFETALETLVEIANMRASMISAFERI 212

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050227-20 zgc:113121 "zgc:113121" [Danio rerio (taxid:7955)]

 Score = 127 (49.8 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 44/186 (23%), Positives = 85/186 (45%)

Query:    23 DEYLLQFXXXXXXXXXXXXXXXXXXXQGWLELASARHAMGASRINGALLDLKVHAAA--- 79
             DE LL F                   +GW  +A AR++MG  +++      ++   A   
Sbjct:    10 DEQLLLFMEQLEALEEKRQRLNSLIEEGWFSIAKARYSMGNKQVSALQYASEMQPLAHVE 69

Query:    80 TSLK---VSEQDVDSMESQPCFTLCKWASSDNGERSSGEEKSL-SPQLRHRNNSQLSEKV 135
             TSL     +E   +  E++      K    D G + +G  + + + Q   +   Q +++V
Sbjct:    70 TSLLEGGTAEFKCERSENKAEEQKTK-TIEDIGAKETGLRRRVHTKQKEVKEGEQDTDEV 128

Query:   136 STRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFERALETLVEIANLHTTMLSMFEQ 195
              T+T +P      + +  L  FG+LV   L+ AQ +F+  +   VEIA+L +T+L+  ++
Sbjct:   129 KTKTDSPT----PEHRNPLKWFGILVPQNLKQAQSAFKEVITLSVEIASLQSTILATRKE 184

Query:   196 VHKELE 201
             +  +++
Sbjct:   185 MQVQMK 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.341    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       186   0.00083  110 3  11 23  0.37    33
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  143 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.32u 0.12s 16.44t   Elapsed:  00:00:01
  Total cpu time:  16.32u 0.12s 16.44t   Elapsed:  00:00:01
  Start:  Sat May 11 07:30:30 2013   End:  Sat May 11 07:30:31 2013

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF01813	196	ATP-synt_D: ATP synthase subunit D ; InterPro: IPR	98.16
PRK00373	204	V-type ATP synthase subunit D; Reviewed	98.14
TIGR00309	209	V_ATPase_subD H(+)-transporting ATP synthase, vacu	97.83
COG1394	211	NtpD Archaeal/vacuolar-type H+-ATPase subunit D [E	97.36
PRK02195	201	V-type ATP synthase subunit D; Provisional	97.33
KOG1647	255	consensus Vacuolar H+-ATPase V1 sector, subunit D	97.22

>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.16  E-value=1.1e-05  Score=67.17  Aligned_cols=137  Identities=24%  Similarity=0.394  Sum_probs=88.3

Q ss_pred             cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhh-hceeEeeccccC
Q 028691           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAA-ATSLKVSEQDVD   90 (205)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~-~~~v~v~~~~~~   90 (205)
                      +++..-.+...|.+..+++.++++|..++..+...+.+.|+.|+.|++.+|...+..    ...... ...|.+....+ 
T Consensus        14 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~ni-   88 (196)
T PF01813_consen   14 KRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSS----VAESVPESVEVEVKERNI-   88 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHH----HHTS-S---EEEEEEEEE-
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH----HHhcCCCCcEEEEEEEEE-
Confidence            344455666778999999999999999999999999999999999999988654332    110000 11233322100 


Q ss_pred             CCCC--CCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHH
Q 028691           91 SMES--QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRS  167 (205)
Q Consensus        91 ~~~~--~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~  167 (205)
                        -|  .|.|...                                             ......|..-+|.+ .|+.+-.
T Consensus        89 --~GV~vP~~~~~---------------------------------------------~~~~~~~~~~y~~~~~~~~~d~  121 (196)
T PF01813_consen   89 --MGVRVPVLEVK---------------------------------------------EVRRPFPSPPYGLLGTPPWLDE  121 (196)
T ss_dssp             --TTEEEEEEEEE-----------------------------------------------GGTTS------TT--HHHHH
T ss_pred             --EEEEeceEEee---------------------------------------------ecccccccccCCcccCCHHHHH
Confidence              01  0111110                                             00012233334444 8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691          168 AQLSFERALETLVEIANLHTTMLSMFEQVHKEL  200 (205)
Q Consensus       168 AQ~~F~~ale~~velanlq~~i~~~~~~i~~~~  200 (205)
                      |...|..+++.++++|+++..+..+..+|+++.
T Consensus       122 a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~  154 (196)
T PF01813_consen  122 AREKFEELLELLIELAELETALRRLAEEIRKTQ  154 (196)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.

>PRK00373 V-type ATP synthase subunit D; Reviewed

Probab=98.14  E-value=2.5e-05  Score=65.65  Aligned_cols=140  Identities=23%  Similarity=0.370  Sum_probs=94.5

Q ss_pred             cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCC
Q 028691           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS   91 (205)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~   91 (205)
                      .++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++.+|...+..-...   .....+|.+....+-|
T Consensus        24 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~~~~~---~~~~~~v~~~~~ni~G  100 (204)
T PRK00373         24 ERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEEAAAS---PKESLEVDVSSKNIMG  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHhC---CCCCceEEEEeEEEEE
Confidence            4445556677799999999999999999999999999999999999999987533310000   0001223332210000


Q ss_pred             CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL  170 (205)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~  170 (205)
                       =..|.|..+      .                      .               .....+|   ||.+ +|+.+..|-.
T Consensus       101 -V~vP~~~~~------~----------------------~---------------~~~~~~~---y~~~~t~~~~d~a~~  133 (204)
T PRK00373        101 -VVVPVIELS------V----------------------K---------------RTLPERG---YGFLGTSAELDEAAE  133 (204)
T ss_pred             -EEeceEEee------c----------------------c---------------cCCccCC---cCcccCCHHHHHHHH
Confidence             001111110      0                      0               0001122   5665 7999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028691          171 SFERALETLVEIANLHTTMLSMFEQVHKELE  201 (205)
Q Consensus       171 ~F~~ale~~velanlq~~i~~~~~~i~~~~~  201 (205)
                      .|..+++.++++|+++..+..+..+|+++.-
T Consensus       134 ~~~~~l~~li~lA~~e~~~~~L~~ei~kT~R  164 (204)
T PRK00373        134 KFEELLEKILELAEVEKTIQLLADEIEKTKR  164 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997643

>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D

Probab=97.83  E-value=0.00023  Score=60.13  Aligned_cols=141  Identities=21%  Similarity=0.299  Sum_probs=92.4

Q ss_pred             cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCC
Q 028691           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS   91 (205)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~   91 (205)
                      .++..-.+..-|.|+.+++.+++++..++..+...+.+.|+.|+.|++..|...+..-.  ........+|.+....+=|
T Consensus        22 ~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~--~~v~~~~~~v~~~~~ni~G   99 (209)
T TIGR00309        22 KRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAA--LSVVTARFEVDMKSKNIMG   99 (209)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH--hcCCcccceEEEEEEEEee
Confidence            44455566777999999999999999999999999999999999999999874221100  0000000112222100000


Q ss_pred             CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL  170 (205)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~  170 (205)
                       =..|.|..+..                           .               .. ..+  .-+|.+ +|+.+-.|-.
T Consensus       100 -V~vP~~~~~~~---------------------------~---------------~~-~~~--~~y~l~~t~~~~d~a~~  133 (209)
T TIGR00309       100 -VVVPVFDSYEI---------------------------R---------------RK-VHE--RGYGLLFTSYKVDEAAE  133 (209)
T ss_pred             -EEcceeEeecc---------------------------c---------------cC-ccc--cCcCcccCCHHHHHHHH
Confidence             00111211100                           0               00 011  125654 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691          171 SFERALETLVEIANLHTTMLSMFEQVHKEL  200 (205)
Q Consensus       171 ~F~~ale~~velanlq~~i~~~~~~i~~~~  200 (205)
                      .|..+++.+|++|+++..+..+..+|+++.
T Consensus       134 ~~~~~l~~li~lA~~e~~~~~L~~eI~~T~  163 (209)
T TIGR00309       134 IYEEAVELIVELAEIETTIRLLAEEIEITK  163 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998754

Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.

>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]

Probab=97.36  E-value=0.0034  Score=53.35  Aligned_cols=137  Identities=23%  Similarity=0.259  Sum_probs=95.9

Q ss_pred             ccccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhh---ceeEeecc
Q 028691           11 AENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA---TSLKVSEQ   87 (205)
Q Consensus        11 ~~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~---~~v~v~~~   87 (205)
                      ++.+..-.+..=|.|+.++..++++|..++..+.+.+.+.|.+++-|-+.+|...+-.      +....   ..|.+.. 
T Consensus        22 a~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~------~~~~~~~~~~v~~~~-   94 (211)
T COG1394          22 ARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEE------IALVQKEKLEVDVDV-   94 (211)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH------HHhCCCCCceeeece-
Confidence            3444455566679999999999999999999999999999999999999998754321      00000   0122211 


Q ss_pred             ccCCCCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhcc-CCCChhHH
Q 028691           88 DVDSMESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFG-VLVSPKLR  166 (205)
Q Consensus        88 ~~~~~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG-~LvP~sLR  166 (205)
                           ++.-.+.+-.                    +.                      -.....|..=|| +-+|+.|=
T Consensus        95 -----~nI~GV~vP~--------------------~~----------------------~~~~~~~~~~~~~~~t~~~ld  127 (211)
T COG1394          95 -----ENIMGVVVPT--------------------FE----------------------LVELTPPPYDLGILSTSAWLD  127 (211)
T ss_pred             -----eeeeeeeeee--------------------ee----------------------eeccCCCcccccccCCcHHHH
Confidence                 1100011000                    00                      001235556677 33999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028691          167 SAQLSFERALETLVEIANLHTTMLSMFEQVHKELE  201 (205)
Q Consensus       167 ~AQ~~F~~ale~~velanlq~~i~~~~~~i~~~~~  201 (205)
                      .|=..|..+|+.+|++|.++..+.-+.++|+++--
T Consensus       128 ~a~~~~~elle~li~lae~e~~~~~L~~Ei~~T~R  162 (211)
T COG1394         128 EAIEKFEELLEKLIELAELETTLRLLLEEIRKTKR  162 (211)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997543

>PRK02195 V-type ATP synthase subunit D; Provisional

Probab=97.33  E-value=0.0056  Score=51.55  Aligned_cols=130  Identities=8%  Similarity=-0.002  Sum_probs=91.2

Q ss_pred             cccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCC
Q 028691           12 ENGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDS   91 (205)
Q Consensus        12 ~~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~   91 (205)
                      +++..-.+..-|.|+..++.+++++..++..+...+...|..|+-|+-.+|......        . ...|.+....+=|
T Consensus        23 ~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~~~~~--------~-~~~v~~~~~nimG   93 (201)
T PRK02195         23 ERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFDEDLI--------K-VKKVEKDYENIAG   93 (201)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhcC--------C-cceEEEeeeeEee
Confidence            344445566678899999999999999999999999999999999988887641000        0 0122222100000


Q ss_pred             CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL  170 (205)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~  170 (205)
                       =..|.|...                                                 ..+...||.+ +|+.+=.|=.
T Consensus        94 -V~vP~~~~~-------------------------------------------------~~~~~~Y~~~~t~~~lD~a~~  123 (201)
T PRK02195         94 -VEVPILDSI-------------------------------------------------EFEIIEYSLLNTPIWVDTGIE  123 (201)
T ss_pred             -eeeceeeee-------------------------------------------------ecCCCCcCCccCCHHHHHHHH
Confidence             000111110                                                 0122347777 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691          171 SFERALETLVEIANLHTTMLSMFEQVHKEL  200 (205)
Q Consensus       171 ~F~~ale~~velanlq~~i~~~~~~i~~~~  200 (205)
                      .|..+++.++++|+++..+..+..+|+++-
T Consensus       124 ~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~  153 (201)
T PRK02195        124 LLKELVQLKIEAEVLQERLLLLEEELRKTT  153 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999754

>KOG1647 consensus Vacuolar H+-ATPase V1 sector, subunit D [Energy production and conversion]

Probab=97.22  E-value=0.013  Score=49.97  Aligned_cols=132  Identities=18%  Similarity=0.236  Sum_probs=84.5

Q ss_pred             chhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhh--ceeEeeccccCCCCC
Q 028691           17 RQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAA--TSLKVSEQDVDSMES   94 (205)
Q Consensus        17 ~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~--~~v~v~~~~~~~~~~   94 (205)
                      -.+-.-|.+.++|=+++..|..-...+...++..+|.||.|+|.+|+-  +     +......  .+|.|....    ++
T Consensus        32 LLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn~--~-----~~v~q~v~~a~v~vRsk~----en  100 (255)
T KOG1647|consen   32 LLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGNF--K-----HQVQQNVKQATVKVRSKK----EN  100 (255)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--c-----HHHHhhhhhheeeeeeec----cc
Confidence            345567999999999999999999999999999999999999999852  2     1222111  123322211    11


Q ss_pred             CCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCCCChhHHHHHHHHHH
Q 028691           95 QPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVLVSPKLRSAQLSFER  174 (205)
Q Consensus        95 ~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~LvP~sLR~AQ~~F~~  174 (205)
                      ...+.+-......+                                       ....-||.-.|- --++++.|...|.+
T Consensus       101 v~GV~Lp~fe~~~d---------------------------------------g~~~~~LtgL~r-gGqqv~~~r~~Y~k  140 (255)
T KOG1647|consen  101 VSGVKLPTFELYQD---------------------------------------GIDAFPLTGLGR-GGQQVARLRENYTK  140 (255)
T ss_pred             cceeeechhhhhcc---------------------------------------cCcccccccccc-chHHHHHHHHHHHH
Confidence            11111111100000                                       001234432211 34789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028691          175 ALETLVEIANLHTTMLSMFEQVHKE  199 (205)
Q Consensus       175 ale~~velanlq~~i~~~~~~i~~~  199 (205)
                      ||+.+|++|++|.....+-.-|..+
T Consensus       141 Ave~LVelasLqtsf~~Lde~ik~T  165 (255)
T KOG1647|consen  141 AVELLVELASLQTSFRTLDEAIKVT  165 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3aon_A	217	V-type sodium ATPase subunit D; V-ATPase, coiled-c	98.12
3a5c_G	223	V-type ATP synthase subunit D; V-ATPase, asymmetri	97.76

>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}

Probab=98.12  E-value=2.4e-05  Score=65.23  Aligned_cols=139  Identities=19%  Similarity=0.239  Sum_probs=91.9

Q ss_pred             ccccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhh-hhhhceeEeeccccCC
Q 028691           13 NGIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKV-HAAATSLKVSEQDVDS   91 (205)
Q Consensus        13 ~~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~-~~~~~~v~v~~~~~~~   91 (205)
                      ++..=.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+..    ... ......|.+....+=+
T Consensus        31 rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~----~~~~~~~~~~v~~~~~nImG  106 (217)
T 3aon_A           31 RGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDE----LLALPAENVSISVVEKNIMS  106 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH----HHTSCSCCCEEEEEEEEETT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH----HHhCCCCceEEEEEEEEEEE
Confidence            33344556668899999999999999999999999999999999999998642221    000 0000123332210000


Q ss_pred             CCCCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHH
Q 028691           92 MESQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQL  170 (205)
Q Consensus        92 ~~~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~  170 (205)
                       =..|.|....     .                      .               ......|  -||.+ .|+.+-.|-.
T Consensus       107 -V~vP~~~~~~-----~----------------------~---------------~~~~~~~--~ygl~~t~~~ld~a~~  141 (217)
T 3aon_A          107 -VKVPLMNFQY-----D----------------------E---------------TLNETPL--EYGYLHSNAELDRSID  141 (217)
T ss_dssp             -EEEEEEEEEC-----C----------------------G---------------GGTTSCC--CCCCTTCCHHHHHHHH
T ss_pred             -EEeceEEEEe-----c----------------------c---------------cccCCcC--CcCcccCCHHHHHHHH
Confidence             0011221110     0                      0               0001111  25665 8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691          171 SFERALETLVEIANLHTTMLSMFEQVHKEL  200 (205)
Q Consensus       171 ~F~~ale~~velanlq~~i~~~~~~i~~~~  200 (205)
                      .|..+++.+|++|+++..+..+-.+|+++.
T Consensus       142 ~~~~~l~~lvelA~le~~~~~L~~eIkkT~  171 (217)
T 3aon_A          142 GFTQLLPKLLKLAEVEKTCQLMAEEIEKTR  171 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998764

>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*

Probab=97.76  E-value=2.3e-05  Score=65.64  Aligned_cols=134  Identities=18%  Similarity=0.247  Sum_probs=52.5

Q ss_pred             cccchhhhhhHHHHHHHhcHHHHHHHHHHHHHHhHHHHHHHHHhhhccCCcccCcccchhhhhhhhceeEeeccccCCCC
Q 028691           14 GIGRQKQVKDEYLLQFLDSLDGYLTLLDSLSSTLSQGWLELASARHAMGASRINGALLDLKVHAAATSLKVSEQDVDSME   93 (205)
Q Consensus        14 ~~~~~~~~~D~lll~~L~lLd~Y~~L~~~L~~~~~~G~l~LARAry~~G~~r~g~d~~D~~~~~~~~~v~v~~~~~~~~~   93 (205)
                      +..-.+..-|.|+.+++++++++..++..+...+...|+.|+.|++.+|...+..-....  .. ...|.+..      +
T Consensus        24 G~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~--~~-~~~v~~~~------~   94 (223)
T 3a5c_G           24 GVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALGV--PP-LEGVEAEV------E   94 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhcC--CC-CeEEEEEE------E
Confidence            334455666889999999999999999999999999999999999999875433200000  00 01121111      0


Q ss_pred             CCCeeEEeeeccCCCCCCCCCccCCCchhhhccCCCCCcccccCCCCCcccccccccccchhhccCC-CChhHHHHHHHH
Q 028691           94 SQPCFTLCKWASSDNGERSSGEEKSLSPQLRHRNNSQLSEKVSTRTGTPLILVDQQRQKSLSVFGVL-VSPKLRSAQLSF  172 (205)
Q Consensus        94 ~~~~f~~~~~~~~e~~e~~~~~~~~~~~~Lr~Rk~~~~~~~~~~~~~~~~~~~~~~~~DPL~wFG~L-vP~sLR~AQ~~F  172 (205)
                      +.-.+.+                    +.+.           .          ......|   ||.+ .|+.+-.|-..|
T Consensus        95 nImGV~v--------------------P~~~-----------~----------~~~~~~~---ygl~~t~~~ld~a~~~~  130 (223)
T 3a5c_G           95 NVWGSKV--------------------PRLK-----------A----------TFPDGAL---LSPVGTPAYTLEASRAF  130 (223)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEe--------------------ceEE-----------e----------ccCCCCC---cCcccCCHHHHHHHHHH
Confidence            0000000                    0000           0          0000112   5666 899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028691          173 ERALETLVEIANLHTTMLSMFEQVHKEL  200 (205)
Q Consensus       173 ~~ale~~velanlq~~i~~~~~~i~~~~  200 (205)
                      ..+++.+|++|+++..+..+-.+|+++.
T Consensus       131 ~~~l~~lvelA~le~~~~~L~~eIkkT~  158 (223)
T 3a5c_G          131 RRYAEALIRVANTETRLKKIGEEIKKTT  158 (223)
T ss_dssp             -CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00