Citrus Sinensis ID: 028694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAERV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEcEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
marngervgeisqpppqpqppppparassggrlrnradplLVVCRCYSVLTSLTALLCLAVNVLSAIRsfkngsdiFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTrafpdysakqKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAERV
Flexible Loop (DISEMBL)
marngervgeisqpppqpqpppppaRASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRarqqkemtrdqavkdledLERRREELEQLLVAERV
Low Complexity Region (SEG)
MARNGERVGEISqpppqpqpppppARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKdledlerrreeleqllVAERV
Disordered region (IsUnstruct)
*************************************DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKR***********************************
Disordered Region (DISOPRED)
***************************************LLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIK*****************************LLV****
Disordered Region (DISEMBL)
*******************************RLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRA*********QAVKDLEDLERRREELEQLLVAERV
Disordered Region (DISPRO)
***********************************RADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVAERV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
297798566	200	hypothetical protein ARALYDRAFT_491320 [	0.892	0.915	0.672	1e-70
30689751	200	uncharacterized protein [Arabidopsis tha	0.853	0.875	0.702	4e-70
388520639	197	unknown [Lotus japonicus]	0.819	0.852	0.744	8e-70
388519719	197	unknown [Lotus japonicus]	0.819	0.852	0.744	9e-70
255563364	203	conserved hypothetical protein [Ricinus	0.790	0.798	0.765	8e-69
186515959	199	uncharacterized protein [Arabidopsis tha	0.848	0.874	0.701	1e-68
449459544	200	PREDICTED: uncharacterized protein LOC10	0.848	0.87	0.706	2e-67
225465783	196	PREDICTED: uncharacterized protein LOC10	0.951	0.994	0.671	4e-67
356521233	195	PREDICTED: uncharacterized protein LOC10	0.853	0.897	0.654	2e-64
338832772	197	unknown protein [Caragana jubata]	0.951	0.989	0.589	2e-64

>gi|297798566|ref|XP_002867167.1| hypothetical protein ARALYDRAFT_491320 [Arabidopsis lyrata subsp. lyrata] gi|297313003|gb|EFH43426.1| hypothetical protein ARALYDRAFT_491320 [Arabidopsis lyrata subsp. lyrata]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/183 (67%), Positives = 155/183 (84%)

Query: 11  ISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSF 70
           + +P    + P  P+  S+  +L NRADP LVVCRC+SV+TSL A+LC+ VNVL+A+RSF
Sbjct: 1   MDRPEEIEESPAGPSSGSAKSKLANRADPFLVVCRCFSVVTSLIAILCVVVNVLAAVRSF 60

Query: 71  KNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFP 130
           ++  D+FDGIFRCYAVVIA FV L ETEW F+LKF+KVLE+W  RGMLQIFVAVMTRAFP
Sbjct: 61  RDSHDLFDGIFRCYAVVIACFVVLVETEWGFILKFSKVLEFWAGRGMLQIFVAVMTRAFP 120

Query: 131 DYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLE 190
           D+  ++KDL+LLQNIASY+LLACGV+YVISG+LCIG +KRARQQKE++R+QAVKDLE++ 
Sbjct: 121 DFMTQKKDLLLLQNIASYLLLACGVIYVISGVLCIGFLKRARQQKEVSREQAVKDLEEIA 180

Query: 191 RRR 193
           RR+
Sbjct: 181 RRK 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30689751|ref|NP_849487.1| uncharacterized protein [Arabidopsis thaliana] gi|26451440|dbj|BAC42819.1| unknown protein [Arabidopsis thaliana] gi|107738160|gb|ABF83652.1| At4g33625 [Arabidopsis thaliana] gi|332660855|gb|AEE86255.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 123/175 (70%), Positives = 152/175 (86%)

Query: 19  QPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFD 78
           + P  P+  S+  +L NRADP LVVCRC+S++TSL A+LC+ VNVL+A+RSF++  D+FD
Sbjct: 9   ESPAGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFD 68

Query: 79  GIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKD 138
           GIFRCYAVVIA FV L ETEW F+LKF+KVLEYW  RGMLQIFVAVMTRAFPDY  ++KD
Sbjct: 69  GIFRCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQIFVAVMTRAFPDYMTQKKD 128

Query: 139 LILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRR 193
           L+LLQNIASY+LLACGV+YVISG+LCIG +KRARQQKE++R+QAVKDLE++ RR+
Sbjct: 129 LLLLQNIASYLLLACGVIYVISGVLCIGFLKRARQQKEVSREQAVKDLEEIARRK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520639|gb|AFK48381.1| unknown [Lotus japonicus]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 150/168 (89%)

Query: 38  DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAET 97
           DP LV C+C+SV+TSL A+LC+AVNVLSA+RSFKN SDIFDGIFRCYAVVIA FV LAET
Sbjct: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89

Query: 98  EWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVY 157
           EW F++KF++VLEYW ARGMLQIFV VMTRAFPDY+  ++ +ILLQNIASY+LLACG VY
Sbjct: 90  EWSFIIKFSQVLEYWAARGMLQIFVGVMTRAFPDYTRAREWIILLQNIASYLLLACGFVY 149

Query: 158 VISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAERV 205
           +ISG+LCIG +KRARQ++ +T +QA KDLE+LERR+ ELEQLL+AERV
Sbjct: 150 LISGVLCIGFLKRARQKQAITTEQAAKDLEELERRKAELEQLLLAERV 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519719|gb|AFK47921.1| unknown [Lotus japonicus]

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 150/168 (89%)

Query: 38  DPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAET 97
           DP LV C+C+SV+TSL A+LC+AVNVLSA+RSFKN SDIFDGIFRCYAVVIA FV LAET
Sbjct: 30  DPFLVTCKCFSVITSLAAILCIAVNVLSAVRSFKNASDIFDGIFRCYAVVIAAFVVLAET 89

Query: 98  EWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVY 157
           EW F++KF++VLEYW ARGMLQIFV VMTRAFPDY+  ++ +ILLQNIASY+LLACG VY
Sbjct: 90  EWSFIIKFSQVLEYWAARGMLQIFVGVMTRAFPDYTRAREWIILLQNIASYLLLACGFVY 149

Query: 158 VISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAERV 205
           +ISG+LCIG +KRARQ++ +T +QA KDLE+LERR+ ELEQLL+AERV
Sbjct: 150 LISGVLCIGFLKRARQKQAITTEQAAKDLEELERRKAELEQLLLAERV 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563364|ref|XP_002522685.1| conserved hypothetical protein [Ricinus communis] gi|223538161|gb|EEF39772.1| conserved hypothetical protein [Ricinus communis]

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 124/162 (76%), Positives = 146/162 (90%)

Query: 26  RASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYA 85
           R  S  R+R  ADPLLVVCRC+S +T+LTA+LC+AVN LSA+RSF++GSD+FDGIFRCYA
Sbjct: 23  RLGSSSRVRRGADPLLVVCRCFSFVTALTAILCIAVNALSAVRSFRDGSDVFDGIFRCYA 82

Query: 86  VVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNI 145
           V+IAF V +AETEW F++KF +VLEYW  RGMLQIFVAVMTRAFPDYS+ QKDLILLQNI
Sbjct: 83  VLIAFSVVVAETEWGFIVKFWQVLEYWAGRGMLQIFVAVMTRAFPDYSSSQKDLILLQNI 142

Query: 146 ASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLE 187
           ASYMLLACGVVYV+SGILCIG +KRARQQKE++++QAVKDLE
Sbjct: 143 ASYMLLACGVVYVVSGILCIGFLKRARQQKEISKEQAVKDLE 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186515959|ref|NP_001119110.1| uncharacterized protein [Arabidopsis thaliana] gi|332660856|gb|AEE86256.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/174 (70%), Positives = 149/174 (85%)

Query: 19  QPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFD 78
           + P  P+  S+  +L NRADP LVVCRC+S++TSL A+LC+ VNVL+A+RSF++  D+FD
Sbjct: 9   ESPAGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFD 68

Query: 79  GIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKD 138
           GIFRCYAVVIA FV L ETEW F+LKF+KVLEYW  RGMLQIFVAVMTRAFPDY  ++KD
Sbjct: 69  GIFRCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQIFVAVMTRAFPDYMTQKKD 128

Query: 139 LILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERR 192
           L+LLQNIASY+LLACGV+YVISG+LCIG +KRARQQKE++R+QAVKDLE   R+
Sbjct: 129 LLLLQNIASYLLLACGVIYVISGVLCIGFLKRARQQKEVSREQAVKDLEIARRK 182

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459544|ref|XP_004147506.1| PREDICTED: uncharacterized protein LOC101214901 [Cucumis sativus]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/174 (70%), Positives = 149/174 (85%)

Query: 32  RLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFF 91
           R R   DPLLV CR +SV+T+LTA+LC+  NV+SAIRSFKN SDIFDGIFRCYAVVIAFF
Sbjct: 27  RPRRSVDPLLVTCRFFSVITALTAILCIVSNVISAIRSFKNQSDIFDGIFRCYAVVIAFF 86

Query: 92  VALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLL 151
             LAETEW+F+ K  KVLEYW  RGMLQIFVAVMTRAFP YS +Q++LILLQ+ ASY+LL
Sbjct: 87  AVLAETEWEFIFKNWKVLEYWAGRGMLQIFVAVMTRAFPVYSVEQRELILLQDAASYLLL 146

Query: 152 ACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAERV 205
           ACG VYV+SGILCIG +KRAR++KE  +D+ VKDL++LER+++ELEQLL++E V
Sbjct: 147 ACGAVYVVSGILCIGFLKRAREKKETAKDKVVKDLQELERQKQELEQLLISETV 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465783|ref|XP_002268351.1| PREDICTED: uncharacterized protein LOC100267500 [Vitis vinifera] gi|296087430|emb|CBI34019.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 137/204 (67%), Positives = 169/204 (82%), Gaps = 9/204 (4%)

Query: 1   MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLA 60
           MA NG+  G          P    + + +  R+R R DPLL+VCRC+S +T+LTA+LC+ 
Sbjct: 1   MAGNGDEEG---------LPRAASSTSGAAARVRARGDPLLIVCRCFSFITALTAILCIC 51

Query: 61  VNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQI 120
           VNVLSA+RSFK+GSD+FDGIFRCYAVVIA FV +AETEW F++KF K+LEYW  RGMLQI
Sbjct: 52  VNVLSAVRSFKDGSDVFDGIFRCYAVVIALFVVVAETEWGFIMKFWKMLEYWAGRGMLQI 111

Query: 121 FVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRD 180
           FVAVMTRAFP+ S+KQKDL+LLQNIASYMLLACG++YVISGILCIG +KRARQ+KE++R+
Sbjct: 112 FVAVMTRAFPNESSKQKDLVLLQNIASYMLLACGLIYVISGILCIGFLKRARQKKEVSRE 171

Query: 181 QAVKDLEDLERRREELEQLLVAER 204
           QA+KDLE+LE+RREELE LL+ ER
Sbjct: 172 QAIKDLEELEQRREELEALLIMER 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521233|ref|XP_003529261.1| PREDICTED: uncharacterized protein LOC100793094 [Glycine max]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/185 (65%), Positives = 145/185 (78%), Gaps = 10/185 (5%)

Query: 1   MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLA 60
           M+RNG+ V          +    P+  SS   +RNR DP LV CRC+S  TSL A+LC+A
Sbjct: 1   MSRNGDVV----------EQNAAPSTTSSSSTIRNRTDPFLVACRCFSFFTSLAAILCIA 50

Query: 61  VNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQI 120
           VN LSA+RSFK+ SDIFDGIFRCYAV++A FV LAETEW F+LKF+KVLEYW ARGMLQI
Sbjct: 51  VNFLSAVRSFKHASDIFDGIFRCYAVLVAAFVVLAETEWSFILKFSKVLEYWAARGMLQI 110

Query: 121 FVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRD 180
           F AVMTRAFPDY   ++DL LLQ+IASY+LL CGVVYV+SGILCIG +KRARQ++E+TR+
Sbjct: 111 FAAVMTRAFPDYIGDRRDLFLLQSIASYLLLGCGVVYVVSGILCIGFLKRARQKQEITRE 170

Query: 181 QAVKD 185
           QA KD
Sbjct: 171 QATKD 175

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|338832772|gb|AEJ20973.1| unknown protein [Caragana jubata]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 154/202 (76%), Gaps = 7/202 (3%)

Query: 1   MARNGERVGEISQPPPQPQPPPPPARASSGGRLRNRADPLLVVCRCYSVLTSLTALLCLA 60
           MAR GE          +  P  P        ++R R D  L +CR + ++T+  A+LC+ 
Sbjct: 1   MAREGE-------VDEENVPVLPSTTTDDNRKVRRRPDLFLSLCRFFRLITAFAAILCIV 53

Query: 61  VNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQI 120
            NVLSAIRSFKN SD+FDGIFRCY VVIA  V LAETEW F++KF+KVLEYWV RGMLQI
Sbjct: 54  ANVLSAIRSFKNQSDVFDGIFRCYGVVIAGLVILAETEWSFIIKFSKVLEYWVGRGMLQI 113

Query: 121 FVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRD 180
           FVAVMTRAFP+Y+ ++++L++LQN+A YMLLACG++YV+ GILCIG +KR RQ+KE+TR+
Sbjct: 114 FVAVMTRAFPNYNRERQELVVLQNVACYMLLACGLLYVVLGILCIGILKRHRQKKEITRE 173

Query: 181 QAVKDLEDLERRREELEQLLVA 202
           QA KDLE+ E+RREELE++L+A
Sbjct: 174 QAAKDLEETEQRREELERVLMA 195

Source: Caragana jubata

Species: Caragana jubata

Genus: Caragana

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:1005716273	200	AT4G33625 "AT4G33625" [Arabido	0.780	0.8	0.730	2.1e-61

TAIR|locus:1005716273 AT4G33625 "AT4G33625" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 119/163 (73%), Positives = 142/163 (87%)

Query:    25 ARASSGG---RLRNRADPLLVVCRCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIF 81
             A  SSG    +L NRADP LVVCRC+S++TSL A+LC+ VNVL+A+RSF++  D+FDGIF
Sbjct:    12 AGPSSGSAKLKLGNRADPFLVVCRCFSLVTSLIAILCVVVNVLAAVRSFRDSHDLFDGIF 71

Query:    82 RCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLIL 141
             RCYAVVIA FV L ETEW F+LKF+KVLEYW  RGMLQIFVAVMTRAFPDY  ++KDL+L
Sbjct:    72 RCYAVVIACFVVLVETEWGFILKFSKVLEYWAGRGMLQIFVAVMTRAFPDYMTQKKDLLL 131

Query:   142 LQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVK 184
             LQNIASY+LLACGV+YVISG+LCIG +KRARQQKE++R+QAVK
Sbjct:   132 LQNIASYLLLACGVIYVISGVLCIGFLKRARQQKEVSREQAVK 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.139   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       177   0.00084  109 3  11 22  0.42    31
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.45u 0.15s 14.60t   Elapsed:  00:00:00
  Total cpu time:  14.45u 0.15s 14.60t   Elapsed:  00:00:00
  Start:  Sat May 11 07:39:33 2013   End:  Sat May 11 07:39:33 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	99.84
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.02
PF07047	134	OPA3: Optic atrophy 3 protein (OPA3); InterPro: IP	92.42
PF07332	121	DUF1469: Protein of unknown function (DUF1469); In	91.06
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	88.05
PF05680	86	ATP-synt_E: ATP synthase E chain; InterPro: IPR008	87.57
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	87.36
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	86.31
PRK08156	361	type III secretion system protein SpaS; Validated	84.58
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	83.8
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	82.88
PRK07352	174	F0F1 ATP synthase subunit B; Validated	81.52
PRK05702	359	flhB flagellar biosynthesis protein FlhB; Reviewed	80.91
PRK09108	353	type III secretion system protein HrcU; Validated	80.12

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=99.84  E-value=9.9e-21  Score=150.09  Aligned_cols=128  Identities=23%  Similarity=0.436  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhheeccCCCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028694           45 RCYSVLTSLTALLCLAVNVLSAIRSFKNGSDIFDGIFRCYAVVIAFFVALAETEWQFVLKFTKVLEYWVARGMLQIFVAV  124 (205)
Q Consensus        45 r~~s~VTvl~ALlciavnvis~v~sf~~~~difdgIlRcY~I~~allvilaEtEW~~i~kf~kvLe~Wi~RG~lqiFVgv  124 (205)
                      +++.++++++|++++++.+.+++..    .++.+.++++|.++||++++++|.+|.++.|+++||.+|.|||++|+|+|+
T Consensus         4 ~~~r~~~~~~~~~~i~~gi~~l~~~----~~~~~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~   79 (136)
T PF08507_consen    4 NIFRILNIIAGILLILAGILSLFNS----FSFSSFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGT   79 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence            5677888888888888888887753    444467899999999999999999999999999999999999999999999


Q ss_pred             HhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 028694          125 MTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLE  187 (205)
Q Consensus       125 mt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe  187 (205)
                      |+...          .++..+++++|+.+|++|++.|+.|.....+ ..|++++...+++|.|
T Consensus        80 l~~~~----------~~~~~i~g~~~~~~G~~~i~l~~~~~~~~~~-~~r~~~~~~~~~~~~~  131 (136)
T PF08507_consen   80 LCLGQ----------SILSIIIGLLLFLVGVIYIILGFFCPIKEPE-SMREQEIALSSQQDNE  131 (136)
T ss_pred             HHHhh----------HHHHHHHHHHHHHHHHHHHHHHHHcCCCCch-hcCccccccccccccc
Confidence            99987          7899999999999999999999999988443 3444444444455544

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.02  E-value=1.2  Score=36.58  Aligned_cols=48  Identities=29%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 028694          116 GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGC  167 (205)
Q Consensus       116 G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~  167 (205)
                      |++.+=.|+.++.+...    .--.++-.+.+..++|.|++-+.+|+.|+-.
T Consensus        15 gilli~~gI~~Lv~~~~----~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~   62 (191)
T PF04156_consen   15 GILLIASGIAALVLFIS----GLGALISFILGIALLALGVVLLSLGLLCLLS   62 (191)
T ss_pred             HHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56655555555554321    0235778888999999999999999998855

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans

Probab=92.42  E-value=0.93  Score=36.58  Aligned_cols=55  Identities=25%  Similarity=0.335  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694          149 MLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE  203 (205)
Q Consensus       149 ~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~  203 (205)
                      =+|+=+++|.++|.+=+.=..|+..+.++.+++.+.++++|+.+-+||+..+...
T Consensus        77 ell~E~fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~  131 (134)
T PF07047_consen   77 ELLGEAFIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQ  131 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666676665444444465666666666666899999999999999887654

This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like

Probab=91.06  E-value=5.2  Score=30.54  Aligned_cols=44  Identities=16%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 028694          148 YMLLACGVVYVISGILCIGCIKRARQQK----EMTRDQAVKDLEDLER  191 (205)
Q Consensus       148 ~~Ll~cG~vYvl~GlLC~g~lKr~rq~k----~~~reqa~kdLe~l~~  191 (205)
                      +..+..+++|++.++.|....+++.+++    +.++++.++|.+-+..
T Consensus        73 ~a~liv~~~~l~la~i~~~~~~~~l~~~~~~~~~t~~~l~~d~~~lk~  120 (121)
T PF07332_consen   73 LAFLIVAGLYLLLALILLLIGRRRLRRAPPPFEETIAELKEDIAALKE  120 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Confidence            4667789999999999998777665522    6678888888887754

The function is not known.

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=88.05  E-value=4.7  Score=33.74  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694          138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE  203 (205)
Q Consensus       138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~  203 (205)
                      +...|-.-.-|.++..+++|+++.-+=..-+.+.-   +.++++..+++++-++.++|.++++..+
T Consensus        26 d~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l---~~R~~~I~~~l~~Ae~~~~eA~~~~~ey   88 (181)
T PRK13454         26 DFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVL---AERQGTITNDLAAAEELKQKAVEAEKAY   88 (181)
T ss_pred             cHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            44456666667788888888888666554444333   2334444566666666666666555443

>PF05680 ATP-synt_E: ATP synthase E chain; InterPro: IPR008386 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.57  E-value=4.6  Score=30.89  Aligned_cols=25  Identities=40%  Similarity=0.588  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028694          142 LQNIASYMLLACGVVYVISGILCIGCIK  169 (205)
Q Consensus       142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lK  169 (205)
                      +.++.=|..|+.|++|   |+.+-..|+
T Consensus         9 ~inv~RySaL~~Gv~Y---G~~~~~~L~   33 (86)
T PF05680_consen    9 LINVLRYSALGLGVVY---GAYHQRYLK   33 (86)
T ss_pred             chHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            5678889999999999   666666666

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit E found in the F0 complex of F-ATPases. Mitochondrial F-ATPases can associate together to form dimeric or oligomeric complexes, such interactions involving the physical association of membrane-embedded F0 complexes. In yeast, the F0 complex E subunit appears to play an important role in supporting F-ATPase dimerisation. This subunit is anchored to the inner mitochondrial membrane via its N-terminal region, which is involved in stabilising subunits G and K of the F0 complex. The C-terminal region of subunit E is hydrophilic, protruding into the intermembrane space where it can also help stabilise the F-ATPase dimer complex []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=87.36  E-value=3.6  Score=35.43  Aligned_cols=59  Identities=19%  Similarity=0.316  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028694          142 LQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQAVKDLEDLERRREELEQLLVAE  203 (205)
Q Consensus       142 ~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~reqa~kdLe~l~~rreele~lL~~~  203 (205)
                      |-.-.-|.++..+++|+++.-+=.+-+++.-   ++++++..+||++-++.|+|.+.++..+
T Consensus        52 ~~~~l~w~~I~FliL~~lL~k~~~~pI~~vL---e~R~~~I~~~L~~Ae~~k~eAe~~~~~y  110 (204)
T PRK09174         52 YASQLLWLAITFGLFYLFMSRVILPRIGGII---ETRRDRIAQDLDQAARLKQEADAAVAAY  110 (204)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444457777888888887666554444333   3334455666666666666666665544

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=86.31  E-value=5.3  Score=27.63  Aligned_cols=17  Identities=35%  Similarity=0.538  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 028694          180 DQAVKDLEDLERRREEL  196 (205)
Q Consensus       180 eqa~kdLe~l~~rreel  196 (205)
                      .+.+|+++++|++-++|
T Consensus        51 ~~~~k~l~~le~e~~~l   67 (68)
T PF06305_consen   51 RRLRKELKKLEKELEQL   67 (68)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            34455666666655543

>PRK08156 type III secretion system protein SpaS; Validated

Probab=84.58  E-value=12  Score=35.34  Aligned_cols=90  Identities=11%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHH
Q 028694          109 LEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLE  187 (205)
Q Consensus       109 Le~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe  187 (205)
                      +=||+.++.+.-+++.......      ..+.........+++.++++|++.+++=.-.=|....|+ ..+++...+|..
T Consensus       147 v~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~K  220 (361)
T PRK08156        147 TAYVFWKNYKKEIFSQLNGNIV------GLIVIWRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYK  220 (361)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            3455555555555544433322      234445566677788888888888887766544444444 444555555544


Q ss_pred             H------HHHHHHHHHHHHhhhc
Q 028694          188 D------LERRREELEQLLVAER  204 (205)
Q Consensus       188 ~------l~~rreele~lL~~~~  204 (205)
                      |      +..||.++.+.+...|
T Consensus       221 e~EGdP~iK~r~R~~~re~a~~r  243 (361)
T PRK08156        221 EQEGNPEIKSKRREAHQEILSEQ  243 (361)
T ss_pred             hccCCHHHHHHHHHHHHHHHHhH
Confidence            4      5567777777766543

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=83.80  E-value=8.7  Score=32.39  Aligned_cols=58  Identities=9%  Similarity=0.098  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 028694          144 NIASYMLLACGVVYVISGILCIGCIKRARQQK----EMTRDQAVKDLEDLERRREELEQLLV  201 (205)
Q Consensus       144 ~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k----~~~reqa~kdLe~l~~rreele~lL~  201 (205)
                      .-.-|.++..+++|+++.-.=.+.+.+--.++    +..-++|++.-++.+.-+++.|+.|.
T Consensus        11 sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~   72 (155)
T PRK06569         11 SQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEID   72 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457888999999999887776665443332    22334444444444444444444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=82.88  E-value=2.6  Score=42.73  Aligned_cols=31  Identities=10%  Similarity=0.212  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 028694           81 FRCYAVVIAFFVALAETEWQFVLKFTKVLEYW  112 (205)
Q Consensus        81 lRcY~I~~allvilaEtEW~~i~kf~kvLe~W  112 (205)
                      ||+=|++|++|+|++=.- ..++=|+.+--.|
T Consensus        68 ~~~~~~~~~~~~~~~~~~-~d~~~~~~~p~~~   98 (697)
T PF09726_consen   68 FKYQGLAFSVFFVCIAFT-SDLICLFFIPVHW   98 (697)
T ss_pred             HhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            444455555555554333 3333333333333

; GO: 0016021 integral to membrane

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=81.52  E-value=25  Score=28.84  Aligned_cols=19  Identities=26%  Similarity=0.399  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 028694          183 VKDLEDLERRREELEQLLV  201 (205)
Q Consensus       183 ~kdLe~l~~rreele~lL~  201 (205)
                      .++|++.++.++|.++++.
T Consensus        56 ~~~l~~A~~~~~ea~~~~~   74 (174)
T PRK07352         56 LQALKEAEERLRQAAQALA   74 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444433

>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed

Probab=80.91  E-value=20  Score=33.59  Aligned_cols=67  Identities=13%  Similarity=0.202  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhhc
Q 028694          138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAER  204 (205)
Q Consensus       138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~~  204 (205)
                      .......+...+++.+++++++.|++=...=|....|+ .-+|+...+|..|      +..||.++.+.+...|
T Consensus       182 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re~a~~~  255 (359)
T PRK05702        182 ALGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQREMARRR  255 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhH
Confidence            44556677777888888899998888776645444444 4445555555554      5567777777766543

>PRK09108 type III secretion system protein HrcU; Validated

Probab=80.12  E-value=22  Score=33.21  Aligned_cols=66  Identities=14%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 028694          138 DLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQK-EMTRDQAVKDLED------LERRREELEQLLVAE  203 (205)
Q Consensus       138 ~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k-~~~reqa~kdLe~------l~~rreele~lL~~~  203 (205)
                      .+.+...+...+++.+.++|++.+++=...=|....|+ .-+++...+|..|      ...||.++.+.+...
T Consensus       177 ~~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re~a~~  249 (353)
T PRK09108        177 LAQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARELAFA  249 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence            44556667777788888899998888776655444444 4455555555544      556777777766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 11/47 (23%)

Query: 169 KRARQQKEMTRDQAVKDLEDLERRREE-----------LEQLLVAER 204
             ++  ++  R++A KDLE+  +R+ E            ++    + 
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQP 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	94.96
4hkr_A	214	Calcium release-activated calcium channel protein;	93.67
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	93.65
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	85.14
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	84.32

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=94.96  E-value=0.48  Score=35.98  Aligned_cols=88  Identities=15%  Similarity=0.156  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhH-----HHHHHHH
Q 028694          115 RGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKE---MTR-----DQAVKDL  186 (205)
Q Consensus       115 RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~---~~r-----eqa~kdL  186 (205)
                      ..++..++-.-|..|-|.......-.++-  .-+++++++.+-++.|.+--...++.+++++   ...     +.-.++.
T Consensus        43 ~a~yf~~~T~tTvGyGd~~P~t~~~r~~~--~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  120 (139)
T 3eff_K           43 RALWWSVETATTVGYGDLYPVTLWGRLVA--VVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRTT  120 (139)
T ss_dssp             HHHHHHHHHHTTCCCSSSCCCSSHHHHHH--HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHheeeecccCCCCcCCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34677788788888877544322222221  2234445544444444443322222211111   111     1223455


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 028694          187 EDLERRREELEQLLVAER  204 (205)
Q Consensus       187 e~l~~rreele~lL~~~~  204 (205)
                      +++..|-++||+.+.++|
T Consensus       121 ~~l~~~l~~le~~~~~~r  138 (139)
T 3eff_K          121 RALHERFDRLERMLDDNR  138 (139)
T ss_dssp             HHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            667777777777776665

>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A

Probab=93.67  E-value=2  Score=36.99  Aligned_cols=130  Identities=17%  Similarity=0.246  Sum_probs=71.8

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhh--hhhheeccCCCccc---c---hHHHHH-------HHHHHHHHHHHhhhhHH
Q 028694           37 ADPLLVVCRCYSVLTSLTALLCLAVNV--LSAIRSFKNGSDIF---D---GIFRCY-------AVVIAFFVALAETEWQF  101 (205)
Q Consensus        37 ~d~~L~~cr~~s~VTvl~ALlciavnv--is~v~sf~~~~dif---d---gIlRcY-------~I~~allvilaEtEW~~  101 (205)
                      ++++|+++.+...+++..-++|+.+-.  ++-+..+.+-.++-   +   .=+|.|       .-.++++..++|----.
T Consensus        56 p~~LLi~fav~Ttllv~vml~AlMIsTcILPnIeav~~~h~~~~v~esPH~r~~~yIE~AW~fST~lGi~LFL~evall~  135 (214)
T 4hkr_A           56 PPGMLIAFAICTTLLVAVHMLALMISTCILPNIETVSNLHSISLVHESPHERLHWYIETAWAFSTLLGLILFLLEIAILC  135 (214)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            367888888888777777776665432  23333332222111   1   114544       23455566666666556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 028694          102 VLKFTKVLEYWVARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRARQQKEMTRDQ  181 (205)
Q Consensus       102 i~kf~kvLe~Wi~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~rq~k~~~req  181 (205)
                      ++|||++-..                          .    --+++.+|+-.++++++.++-=-+.+-      ....|+
T Consensus       136 WVKF~~~~~~--------------------------a----a~~~t~vliPv~i~F~~Fa~hFYrsL~------~hk~e~  179 (214)
T 4hkr_A          136 WVKFYDLSRR--------------------------A----AWSATVVLIPVMIIFMAFAIHFYRSLV------SHKYEV  179 (214)
T ss_dssp             HHHHTTTCHH--------------------------H----HHHHHHHTHHHHHHHHHHHHHHHHHHH------HTHHHH
T ss_pred             eEEeecCCcH--------------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH
Confidence            6666654321                          1    113456778888999888764332222      223556


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 028694          182 AVKDLEDLERRREELEQLLVA  202 (205)
Q Consensus       182 a~kdLe~l~~rreele~lL~~  202 (205)
                      ..++++|||+.+++||+-...
T Consensus       180 ~~~~i~el~~~~~~l~~~~~~  200 (214)
T 4hkr_A          180 TVSGIRELEMLKEQMEQDHLE  200 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccccc
Confidence            678899999999999986654

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=93.65  E-value=1.6  Score=33.58  Aligned_cols=78  Identities=14%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHHHHH
Q 028694          115 RGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIG-----CIKRARQQKEMTRDQAVKDLEDL  189 (205)
Q Consensus       115 RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g-----~lKr~rq~k~~~reqa~kdLe~l  189 (205)
                      -.++..++-.-|.+|-|.......-.++  ..-+++++++++-.+.|.+.-.     ..++.+.++...+.+..+.++++
T Consensus        55 ~a~y~~~~t~tTvGyGd~~p~t~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i  132 (148)
T 3vou_A           55 DALYFSVVTLTTVGDGNFSPQTDFGKVF--TILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI  132 (148)
T ss_dssp             HHHHHHHHHHTTCCCSSCCCCSHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCCCCCCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777778887765433222222  1223344444444444444321     12222223333344444445544


Q ss_pred             HHHHH
Q 028694          190 ERRRE  194 (205)
Q Consensus       190 ~~rre  194 (205)
                      +++-+
T Consensus       133 ~~~~~  137 (148)
T 3vou_A          133 EKKLA  137 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=85.14  E-value=1.7  Score=33.37  Aligned_cols=49  Identities=14%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028694          114 ARGMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILC  164 (205)
Q Consensus       114 ~RG~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC  164 (205)
                      ..++..+++-.-|.+|-|.......-.++  .+.++++|++++=++.|.+-
T Consensus        45 ~~a~y~~~~T~tTvGyGDi~P~t~~gr~~--~~~~~~~g~~~~~~~~~~i~   93 (137)
T 4h33_A           45 PDALWWAIVTATTVGYGDIVPVTPIGRIL--ASIMMLFGIAFIGMITSTIT   93 (137)
T ss_dssp             HHHHHHHHHHHTTCCCSSSCCCSHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCCCCCCCCHhHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            35778888888889988865533322222  22344555555545555443

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=84.32  E-value=0.46  Score=37.46  Aligned_cols=87  Identities=15%  Similarity=0.132  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHh------HHHHHHHHH
Q 028694          116 GMLQIFVAVMTRAFPDYSAKQKDLILLQNIASYMLLACGVVYVISGILCIGCIKRAR--QQKEMT------RDQAVKDLE  187 (205)
Q Consensus       116 G~lqiFVgvmt~~~p~~~~~~~~~~l~~~IaS~~Ll~cG~vYvl~GlLC~g~lKr~r--q~k~~~------reqa~kdLe  187 (205)
                      .++.+++-.-|..|-|.......-.++  ..-+++++++++=++.|.+--....+..  +++.++      .+...++++
T Consensus        71 a~yf~~~T~tTvGyGDi~P~t~~~r~~--~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~  148 (166)
T 3pjs_K           71 ALWWSVETATTVGYGDLYPVTLWGRLV--AVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTR  148 (166)
T ss_dssp             TTTTTHHHHSCCCCSSSCCCSSTTTTT--THHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCCCCCCHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777778886644321111111  1123344444444444444332222111  111111      112356678


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 028694          188 DLERRREELEQLLVAER  204 (205)
Q Consensus       188 ~l~~rreele~lL~~~~  204 (205)
                      +|..+=++||+.+.++|
T Consensus       149 ~L~~~l~~le~~~~~~r  165 (166)
T 3pjs_K          149 ALHERFDRLERMLDDNR  165 (166)
T ss_dssp             HHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            88888889999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00