Citrus Sinensis ID: 028699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MDLVSPPPNTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQQQQQQKVTLNDNNNVTPPPPPPSDHQSAANE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdlvspppntsgfpsssptvpttptarasssspsattpsryesqkrRDWNTFCQYLrnhrpplslpmcsgahVLEFLRYLDQFgktkvhnqncpffglpnppapcpcplrqaWGSLDALIGRLRAAYeehggrpeanpfgARAVRIFLREVRDFQAKArgvsydkkrkrpkqqQQQQQQKVTlndnnnvtppppppsdhqsaane
Flexible Loop (DISEMBL)
mdlvspppntsgfpsssptvpttptarasssspsattpsryesqkrrDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEehggrpeanpfgARAVRIFLREVRDFQAKargvsydkkrkrpkqqqqqqqqkvtlndnnnvtppppppsdhqsaane
Low Complexity Region (SEG)
MDLVSPPPNTSGFpsssptvpttptarasssspsattpsRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNcpffglpnppapcpcplRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDkkrkrpkqqqqqqqqkVTLNDNNNVTppppppSDHQSAANE
Disordered region (IsUnstruct)
***********************************************DWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGG**EANPFGARAVRIFLREVRDFQ**************************************************
Disordered Region (DISOPRED)
****************************************************CQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQN*******NPPAPCPCPLRQAWGSLDALIGRLRA***************ARAVRIFLREVRDFQA*************************************************
Disordered Region (DISEMBL)
*********************************************RRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR*********************VTLNDNNNVT***************
Disordered Region (DISPRO)
**************************************SRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYD*K***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLVSPPPNTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQQQQQQKVTLNDNNNVTPPPPPPSDHQSAANE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
225453046	181	PREDICTED: uncharacterized protein LOC10	0.814	0.922	0.791	3e-74
118486790	183	unknown [Populus trichocarpa]	0.878	0.983	0.690	8e-67
224104927	138	predicted protein [Populus trichocarpa]	0.673	1.0	0.833	7e-64
270309068	225	G1-like protein [Selaginella moellendorf	0.726	0.662	0.766	2e-63
302783941	153	hypothetical protein SELMODRAFT_36560 [S	0.726	0.973	0.766	4e-63
357491035	257	hypothetical protein MTR_5g072510 [Medic	0.712	0.568	0.775	5e-63
15241821	190	uncharacterized protein [Arabidopsis tha	0.775	0.836	0.758	1e-62
297813085	192	light-dependent short hypocotyls 1 [Arab	0.775	0.828	0.758	1e-62
358348199	420	hypothetical protein MTR_119s0026 [Medic	0.717	0.35	0.75	2e-62
449443253	189	PREDICTED: uncharacterized protein LOC10	0.839	0.910	0.791	2e-62

>gi|225453046|ref|XP_002267312.1| PREDICTED: uncharacterized protein LOC100260366 [Vitis vinifera]

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 149/173 (86%), Gaps = 6/173 (3%)

Query: 1   MDLVSPPPNTSGFPSSSPTV--PTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRN 58
           MDLVS     SG P+S  T+  P  P   ++ SSP+   PSRYE+QKRRDWNTF QYLRN
Sbjct: 1   MDLVS----QSGNPNSVSTIINPNNPNTSSTISSPAVYAPSRYENQKRRDWNTFGQYLRN 56

Query: 59  HRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDA 118
           HRPPLSL +C+GAHVLEFLRYLDQFGKTKVHNQ CPFFGL NPPAPCPCPLRQAWGSLDA
Sbjct: 57  HRPPLSLSLCNGAHVLEFLRYLDQFGKTKVHNQTCPFFGLKNPPAPCPCPLRQAWGSLDA 116

Query: 119 LIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPK 171
           LIGRLRAAYEEHGG+PEANPFGARAVR++LREVRDFQAKARGVSY+KKRKR K
Sbjct: 117 LIGRLRAAYEEHGGKPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRSK 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486790|gb|ABK95230.1| unknown [Populus trichocarpa]

 Score =  258 bits (660), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 127/184 (69%), Positives = 146/184 (79%), Gaps = 4/184 (2%)

Query: 1   MDLVSPPPNTSGFPSSSPTV--PTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRN 58
           MD+ +P  +T+   SSSP +  P   +A  ++ S  ++TPSRYE+QKRRDWNTFCQYLRN
Sbjct: 1   MDISTP--STTPKYSSSPIMMNPNPNSASPTTVSAISSTPSRYENQKRRDWNTFCQYLRN 58

Query: 59  HRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDA 118
           H+PPLS P C+G HVLEFL YLDQFGKTKVH+Q C FFG P PPA CPCPLRQAWGSLDA
Sbjct: 59  HKPPLSFPRCNGTHVLEFLCYLDQFGKTKVHHQTCQFFGHPKPPALCPCPLRQAWGSLDA 118

Query: 119 LIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQQQQQ 178
           LIGRLRAAYE HGG+PE NPFGARAVRI+LREVRDFQAK+RGVSY KKRKR  +Q +   
Sbjct: 119 LIGRLRAAYEAHGGKPEENPFGARAVRIYLREVRDFQAKSRGVSYTKKRKRTSKQAEGNN 178

Query: 179 QKVT 182
              T
Sbjct: 179 GTTT 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104927|ref|XP_002313621.1| predicted protein [Populus trichocarpa] gi|222850029|gb|EEE87576.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/138 (83%), Positives = 124/138 (89%)

Query: 32  SPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQ 91
           S  ++TPSRYE+QKRRDWNTFCQYLRNH+PPLS P C+G HVLEFL YLDQFGKTKVH+Q
Sbjct: 1   SAISSTPSRYENQKRRDWNTFCQYLRNHKPPLSFPRCNGTHVLEFLCYLDQFGKTKVHHQ 60

Query: 92  NCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREV 151
            C FFG P PPA CPCPLRQAWGSLDALIGRLRAAYE HGG+PE NPFGARAVRI+LREV
Sbjct: 61  TCQFFGHPKPPALCPCPLRQAWGSLDALIGRLRAAYEAHGGKPEENPFGARAVRIYLREV 120

Query: 152 RDFQAKARGVSYDKKRKR 169
           RDFQAK+RGVSY KKRKR
Sbjct: 121 RDFQAKSRGVSYTKKRKR 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|270309068|dbj|BAI52974.1| G1-like protein [Selaginella moellendorffii]

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 132/150 (88%), Gaps = 1/150 (0%)

Query: 22  TTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLD 81
           +T  A A++SS     PSRYE+QKRRDWNTF QYL+NHRPPL+L  CSGAHVLEFLRYLD
Sbjct: 19  STSRADANASSSQQAPPSRYEAQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLEFLRYLD 78

Query: 82  QFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGA 141
           QFGKTK+H   CPFFGL +PPAPC CPLRQAWGSLDALIGRLRAA+EEHGG+PE+NPFGA
Sbjct: 79  QFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRLRAAFEEHGGKPESNPFGA 138

Query: 142 RAVRIFLREVRDFQAKARGVSYD-KKRKRP 170
           RAVR++LREVR+ QAKARG++Y+ KKRKRP
Sbjct: 139 RAVRLYLREVREMQAKARGIAYEKKKRKRP 168

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302783941|ref|XP_002973743.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii] gi|302788045|ref|XP_002975792.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300156793|gb|EFJ23421.1| hypothetical protein SELMODRAFT_36559 [Selaginella moellendorffii] gi|300158781|gb|EFJ25403.1| hypothetical protein SELMODRAFT_36560 [Selaginella moellendorffii]

 Score =  246 bits (628), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 132/150 (88%), Gaps = 1/150 (0%)

Query: 22  TTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLD 81
           +T  A A++SS     PSRYE+QKRRDWNTF QYL+NHRPPL+L  CSGAHVLEFLRYLD
Sbjct: 4   STSRADANASSSQQAPPSRYEAQKRRDWNTFGQYLKNHRPPLALSRCSGAHVLEFLRYLD 63

Query: 82  QFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGA 141
           QFGKTK+H   CPFFGL +PPAPC CPLRQAWGSLDALIGRLRAA+EEHGG+PE+NPFGA
Sbjct: 64  QFGKTKIHAPACPFFGLAHPPAPCACPLRQAWGSLDALIGRLRAAFEEHGGKPESNPFGA 123

Query: 142 RAVRIFLREVRDFQAKARGVSYD-KKRKRP 170
           RAVR++LREVR+ QAKARG++Y+ KKRKRP
Sbjct: 124 RAVRLYLREVREMQAKARGIAYEKKKRKRP 153

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491035|ref|XP_003615805.1| hypothetical protein MTR_5g072510 [Medicago truncatula] gi|355517140|gb|AES98763.1| hypothetical protein MTR_5g072510 [Medicago truncatula]

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 131/147 (89%), Gaps = 1/147 (0%)

Query: 25  TARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG 84
           TA+   SSP+  TPSRYESQKRRDWNTF QYLRNH+PPL+L +CSGAHV+EFL+YLDQFG
Sbjct: 22  TAQPQPSSPATPTPSRYESQKRRDWNTFQQYLRNHKPPLTLALCSGAHVIEFLKYLDQFG 81

Query: 85  KTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAV 144
           KTKVH   CP+FG PNPP+PC CPL+QAWGSLDALIGRLRAA+EE+GG+PE+NPFG RAV
Sbjct: 82  KTKVHVIGCPYFGQPNPPSPCACPLKQAWGSLDALIGRLRAAFEENGGKPESNPFGTRAV 141

Query: 145 RIFLREVRDFQAKARGVSYD-KKRKRP 170
           RI+LREV+D QAKARGV Y+ KKRKRP
Sbjct: 142 RIYLREVKDGQAKARGVPYEKKKRKRP 168

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241821|ref|NP_198201.1| uncharacterized protein [Arabidopsis thaliana] gi|34851102|gb|AAQ82901.1| light-dependent short hypocotyl 1 [Arabidopsis thaliana] gi|38566596|gb|AAR24188.1| At5g28490 [Arabidopsis thaliana] gi|40824076|gb|AAR92340.1| At5g28490 [Arabidopsis thaliana] gi|332006422|gb|AED93805.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 145/174 (83%), Gaps = 15/174 (8%)

Query: 1   MDLVSPPPNTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHR 60
           MDL+S  PN +   S+  T P++               SRYE+QKRRDWNTFCQYLRNHR
Sbjct: 1   MDLISHQPNKNPNSSTQLTPPSS---------------SRYENQKRRDWNTFCQYLRNHR 45

Query: 61  PPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLSLP CSGAHVLEFLRYLDQFGKTKVH+QNC FFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 46  PPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALI 105

Query: 121 GRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQ 174
           GRLRAAYEE+GG PEANPFG+RAVR+FLREVRDFQAKARGVSY+KKRKR  +Q+
Sbjct: 106 GRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQK 159

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813085|ref|XP_002874426.1| light-dependent short hypocotyls 1 [Arabidopsis lyrata subsp. lyrata] gi|297320263|gb|EFH50685.1| light-dependent short hypocotyls 1 [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 145/174 (83%), Gaps = 15/174 (8%)

Query: 1   MDLVSPPPNTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHR 60
           MDL+S  PN +   S+  T P++               SRYE+QKRRDWNTFCQYLRNHR
Sbjct: 1   MDLISHQPNKNPNSSTQLTPPSS---------------SRYENQKRRDWNTFCQYLRNHR 45

Query: 61  PPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLSLP CSGAHVLEFLRYLDQFGKTKVH+QNC FFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 46  PPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALI 105

Query: 121 GRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQQ 174
           GRLRAAYEE+GG PEANPFG+RAVR+FLREVRDFQAKARGVSY+KKRKR  +Q+
Sbjct: 106 GRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQK 159

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348199|ref|XP_003638136.1| hypothetical protein MTR_119s0026 [Medicago truncatula] gi|355504071|gb|AES85274.1| hypothetical protein MTR_119s0026 [Medicago truncatula]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 126/148 (85%), Gaps = 1/148 (0%)

Query: 39  SRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGL 98
           SRYESQKRRDWNTF QYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTKVH++NC +FG 
Sbjct: 45  SRYESQKRRDWNTFGQYLKNHRPPLTLSRCSGAHVLEFLRYLDQFGKTKVHSENCAYFGN 104

Query: 99  PNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKA 158
            +PP PCPCPL+QAWGSLDALIGRLRAA+EE+GG  E NPFGARAVR++LREVRD QAKA
Sbjct: 105 SHPPGPCPCPLKQAWGSLDALIGRLRAAFEENGGSQEMNPFGARAVRLYLREVRDAQAKA 164

Query: 159 RGVSYDKKRKRPKQQQQQQQQKVTLNDN 186
           RG+ Y+KK KR K  Q QQ   +T+  N
Sbjct: 165 RGIGYEKK-KRKKLNQNQQNGSITMVQN 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443253|ref|XP_004139394.1| PREDICTED: uncharacterized protein LOC101222316 [Cucumis sativus] gi|449520839|ref|XP_004167440.1| PREDICTED: uncharacterized LOC101222316 [Cucumis sativus]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 152/173 (87%), Gaps = 1/173 (0%)

Query: 1   MDLVSPPPNTSGFPSSSPTVPTTPTARASSSSPSATTPSRYESQKRRDWNTFCQYLRNHR 60
           MDL S   + +    ++ T  TTP    ++++ SATTPSRYE+QKRRDWNTFCQYLRNHR
Sbjct: 1   MDLFSESSSNNS-TPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 59

Query: 61  PPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPL+L MCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 60  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 119

Query: 121 GRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKARGVSYDKKRKRPKQQ 173
           GRLRAAYEE+GGR E NPFGARAVR++LREVRDFQAKARGVSY+KKRKRPKQ+
Sbjct: 120 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.609	0.657	0.8	2.8e-50
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.609	0.621	0.752	2.6e-47
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.609	0.570	0.736	4.4e-45
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.609	0.641	0.736	7.1e-45
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.609	0.637	0.688	7.3e-43
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.609	0.686	0.682	5.9e-41
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.604	0.635	0.629	6.1e-39
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.604	0.700	0.645	2.1e-38
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.604	0.649	0.608	1.9e-35
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.604	0.756	0.596	1.5e-33

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 100/125 (80%), Positives = 106/125 (84%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYE+QKRRDWNTFCQYLRNHRPPLSLP CSGAHVLEFLRYLDQFGKTKVH+QN       
Sbjct:    25 RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       RQAWGSLDALIGRLRAAYEE+GG PEANPFG+RAVR+FLREVRDFQAKAR
Sbjct:    85 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query:   160 GVSYD 164
             GVSY+
Sbjct:   145 GVSYE 149

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 94/125 (75%), Positives = 103/125 (82%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYE+QKRRDWNTFCQYLRNH PPLSL  CSGAHVL+FLRYLDQFGKTKVH+QN       
Sbjct:    33 RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       RQAWGSLDALIGRLRAAYEE+GG PE +PFG+R+VRIFLREVRDFQAK+R
Sbjct:    93 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query:   160 GVSYD 164
             GVSY+
Sbjct:   153 GVSYE 157

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 92/125 (73%), Positives = 100/125 (80%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYE+QKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH          
Sbjct:    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       RQAWGSLDALIGRLRAA+EE+GG+PE NPFGARAVR++LREVRD Q+KAR
Sbjct:   114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query:   160 GVSYD 164
             GVSY+
Sbjct:   174 GVSYE 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 92/125 (73%), Positives = 99/125 (79%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYE+QKRRDWNTF QYLRNHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH          
Sbjct:    48 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHP 107

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       RQAWGSLDALIGRLRAA+EE+GG PE NPFGARAVR++LREVRD QAKAR
Sbjct:   108 NPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKAR 167

Query:   160 GVSYD 164
             G+SY+
Sbjct:   168 GISYE 172

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 86/125 (68%), Positives = 99/125 (79%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYESQKRRDWNTF QYL+NH+PPL+L  CSGAHV+EFL+YLDQFGKTKVH          
Sbjct:    31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       +QAWGSLDALIGRLRAAYEE+GGRP++NPF ARAVRI+LREVR+ QAKAR
Sbjct:    91 QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query:   160 GVSYD 164
             G+ Y+
Sbjct:   151 GIPYE 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 86/126 (68%), Positives = 96/126 (76%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYESQKRRDWNTF QYLRNH+PPL+L  CSGAHVLEFL+YLDQFGKTKVH          
Sbjct:    19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEE-HGGRPEANPFGARAVRIFLREVRDFQAKA 158
                       +QAWGSLDALIGRLRAA+EE  GG PE+NPF A+AVRI+L+EVR  QAKA
Sbjct:    79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138

Query:   159 RGVSYD 164
             RG+ YD
Sbjct:   139 RGIPYD 144

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 78/124 (62%), Positives = 89/124 (71%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYESQKRRDWNTFCQYLRN +PP+ +  C   H+L+FL+YLDQFGKTKVH          
Sbjct:    40 RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQV 99

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       +QAWGSLDALIGRLRAA+EE+GG PE NPF    +R+FLREVRD QAKAR
Sbjct:   100 EPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKAR 159

Query:   160 GVSY 163
             GV Y
Sbjct:   160 GVPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 80/124 (64%), Positives = 91/124 (73%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYESQKRRDWNTF QYL+N RPP+ +  CS  HVL+FLRYLDQFGKTKVH          
Sbjct:    25 RYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQP 84

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       RQAWGSLDALIGRLRAAYEE+GG PE NPF + A+R++LREVR+ QAKAR
Sbjct:    85 EPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKAR 144

Query:   160 GVSY 163
             G+ Y
Sbjct:   145 GIPY 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 76/125 (60%), Positives = 87/125 (69%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYESQKRRDWNTF QYL++  PPL +      HVL FLRYLDQFGKTKVH+Q        
Sbjct:    37 RYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQP 96

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGG-RPEANPFGARAVRIFLREVRDFQAKA 158
                       +QAWGSLDALIGRLRAAYEEHGG  P+ NPF   ++R+ LREVR+ QAKA
Sbjct:    97 DPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKA 156

Query:   159 RGVSY 163
             RG+ Y
Sbjct:   157 RGIPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 74/124 (59%), Positives = 82/124 (66%)

Query:    40 RYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNXXXXXXX 99
             RYESQK RDWNTFCQYL    PP+ +  C   H+L+FL+  DQFGKTKVH Q        
Sbjct:    23 RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFGQK 82

Query:   100 XXXXXXXXXXRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDFQAKAR 159
                       +QAWGSLDALIGRLRAAYEE+GG  E NPF    +RIFLREVR  QAKAR
Sbjct:    83 EPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAKAR 142

Query:   160 GVSY 163
             GV Y
Sbjct:   143 GVLY 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       140   0.00091  102 3  11 22  0.43    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.89u 0.08s 10.97t   Elapsed:  00:00:01
  Total cpu time:  10.89u 0.08s 10.97t   Elapsed:  00:00:01
  Start:  Sat May 11 07:46:34 2013   End:  Sat May 11 07:46:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	9e-72

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  213 bits (544), Expect = 9e-72
 Identities = 100/126 (79%), Positives = 106/126 (84%)

Query: 28  ASSSSPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTK 87
             SS       SRYESQKRRDWNTFCQYLRN RPPL+L  CSG HVL+FLRYLDQFGKTK
Sbjct: 7   ECSSRSPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLDQFGKTK 66

Query: 88  VHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIF 147
           VH Q C FFG P+PPAPCPCPLRQAWGSLDALIGRLRAA+EEHGG PE NPF ARAVR++
Sbjct: 67  VHGQACGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAARAVRLY 126

Query: 148 LREVRD 153
           LREVRD
Sbjct: 127 LREVRD 132

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	91.3
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	88.8
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	86.58
cd00799	287	INT_Cre Cre recombinase, C-terminal catalytic doma	85.47
TIGR02225	291	recomb_XerD tyrosine recombinase XerD. The phage i	82.78
PRK00283	299	xerD site-specific tyrosine recombinase XerD; Revi	82.28

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=1.2e-75  Score=470.50  Aligned_cols=123  Identities=84%  Similarity=1.468  Sum_probs=119.5

Q ss_pred             CCCCCCCchhHHhhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhh
Q 028699           32 SPSATTPSRYESQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQ  111 (205)
Q Consensus        32 ~~~~~~~SrYesQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQ  111 (205)
                      ..+++++||||+|||||||||+|||+||+|||+|++|+++|||+||+|+|||||||||.++|+||||++||+||+|||||
T Consensus        10 ~~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~CPlrq   89 (132)
T PF04852_consen   10 RSPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPCPLRQ   89 (132)
T ss_pred             CCCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCCcHHH
Confidence            34556889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcchhHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Q 028699          112 AWGSLDALIGRLRAAYEEHGGRPEANPFGARAVRIFLREVRDF  154 (205)
Q Consensus       112 AWGSLDALIGRLRAafEE~Gg~pE~NPF~araVRlYLReVRd~  154 (205)
                      |||||||||||||||||||||+||+|||+++|||+|||||||+
T Consensus        90 AwGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   90 AWGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             HhccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=91.30  E-value=0.35  Score=37.64  Aligned_cols=55  Identities=22%  Similarity=0.553  Sum_probs=44.9

Q ss_pred             CCCCCCc---chhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 028699           63 LSLPMCS---GAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY  127 (205)
Q Consensus        63 lsL~~cs---g~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAaf  127 (205)
                      +.+.+|.   +..|+..++.+-..|-..||...|.+.+.+.+    .||.      +|.|+-.|+++|
T Consensus        41 vgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   41 VGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             EEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            3345555   58899999999999999999999999987553    6665      899999999888

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=88.80  E-value=0.66  Score=31.37  Aligned_cols=40  Identities=28%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccC
Q 028699           44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFG   84 (205)
Q Consensus        44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfG   84 (205)
                      .-+++++.|.+||.+ ....++..++..||.+|+.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            446789999999999 5667788899999999999998766

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=86.58  E-value=2.9  Score=32.40  Aligned_cols=69  Identities=23%  Similarity=0.258  Sum_probs=48.1

Q ss_pred             hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 028699           44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL  123 (205)
Q Consensus        44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL  123 (205)
                      +-+..|+.|.+|+....... +..-+..||.+|+.++...|                          ....++...++-|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l   73 (284)
T cd00798          21 AYRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSAL   73 (284)
T ss_pred             HHHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHH
Confidence            34567899999998754332 56678899999999887644                          1335777788888


Q ss_pred             HHHHHHhC--CCCCCCcc
Q 028699          124 RAAYEEHG--GRPEANPF  139 (205)
Q Consensus       124 RAafEE~G--g~pE~NPF  139 (205)
                      +++|.-..  +--+.||+
T Consensus        74 ~~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          74 RSFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHHcCCccCChh
Confidence            88887322  33456777

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

>cd00799 INT_Cre Cre recombinase, C-terminal catalytic domain

Probab=85.47  E-value=8.5  Score=31.15  Aligned_cols=77  Identities=22%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 028699           44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL  123 (205)
Q Consensus        44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL  123 (205)
                      .-..+++.|..|+..+-  +....-+..+|.+|+.||.+.                           .+..++-..++.|
T Consensus         6 ~y~~~l~~f~~~~~~~~--~~~~~~~~~~i~~~~~~l~~~---------------------------~s~~ti~~~~~~l   56 (287)
T cd00799           6 AYLSDWRRFAAWCQAHG--RTPLPASPETVTLYLTDLADS---------------------------LAPSTISRRLSAL   56 (287)
T ss_pred             HHHHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHHhc---------------------------cChHHHHHHHHHH
Confidence            34568889999998752  222234589999999988531                           1457888999999


Q ss_pred             HHHHHHhCCCCCCCcchhhHHHHHHHHHH
Q 028699          124 RAAYEEHGGRPEANPFGARAVRIFLREVR  152 (205)
Q Consensus       124 RAafEE~Gg~pE~NPF~araVRlYLReVR  152 (205)
                      +.+|+..+.   .||+....++.-|+.++
T Consensus        57 ~~~~~~~~~---~~p~~~~~~~~~~~~~~   82 (287)
T cd00799          57 SQLHRRSGL---PSPADSPLVRLVLRGIR   82 (287)
T ss_pred             HHHHHHcCC---CCCccCHHHHHHHHHHH
Confidence            999985433   58877655666665554

Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.

>TIGR02225 recomb_XerD tyrosine recombinase XerD

Probab=82.78  E-value=5  Score=31.42  Aligned_cols=70  Identities=24%  Similarity=0.402  Sum_probs=47.5

Q ss_pred             HhhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 028699           43 SQKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGR  122 (205)
Q Consensus        43 sQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR  122 (205)
                      .+-+..++.|..|+....  ..+..-+..||.+|+.++.+.|                          .+.-++...++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~it~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~   70 (291)
T TIGR02225        19 EAYRRDLEKFLEFLEERG--IDLEEVDRGDIVDFLAELKEAG--------------------------LSARSIARALSA   70 (291)
T ss_pred             HHHHHHHHHHHHHHHhcC--CChHHCCHHHHHHHHHHhhcCC--------------------------CCHhHHHHHHHH
Confidence            445567788999998542  2455567899999999887644                          122467888999


Q ss_pred             HHHHHHHh--CCCCCCCcch
Q 028699          123 LRAAYEEH--GGRPEANPFG  140 (205)
Q Consensus       123 LRAafEE~--Gg~pE~NPF~  140 (205)
                      |+++|+-.  -+--+.|||.
T Consensus        71 l~~~~~~a~~~~~~~~np~~   90 (291)
T TIGR02225        71 LRSFYRFLLREGIREDDPSA   90 (291)
T ss_pred             HHHHHHHHHhcccccCCchh
Confidence            99988732  2334568863

The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK.

>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed

Probab=82.28  E-value=4  Score=32.58  Aligned_cols=67  Identities=25%  Similarity=0.270  Sum_probs=47.1

Q ss_pred             hhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 028699           45 KRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLR  124 (205)
Q Consensus        45 KRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR  124 (205)
                      -+.+|+.|..||..+.-  .+...+..||.+|+.++.+.|                          .+-.++...+..|+
T Consensus        30 ~~~~~~~~~~~~~~~~~--~~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l~   81 (299)
T PRK00283         30 YRRDLELFAEWLAARGL--SLAEATRDDLQAFLAELAEGG--------------------------YKATSSARRLSALR   81 (299)
T ss_pred             HHHHHHHHHHHHHhcCC--ChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence            35688899999986532  566778999999999885432                          23457778888888


Q ss_pred             HHHHHhC--CCCCCCcc
Q 028699          125 AAYEEHG--GRPEANPF  139 (205)
Q Consensus       125 AafEE~G--g~pE~NPF  139 (205)
                      ++|+-..  +--..|||
T Consensus        82 ~~~~~a~~~~~i~~np~   98 (299)
T PRK00283         82 RFFQFLLREGLREDDPS   98 (299)
T ss_pred             HHHHHHHHcCCcccCch
Confidence            8887331  23446776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 33/103 (32%)

Query: 40  RYESQKRRDWNT---------FCQYLRNHRPPLSLPMCSGAHVLEFLR--YLD-QFGKTK 87
            Y   K  D +          F  ++ +H     L        +   R  +LD +F + K
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHH-----LKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 88  VHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEH 130
           + +                     A GS+   + +L+  Y+ +
Sbjct: 507 IRHD---------------STAWNASGSILNTLQQLK-FYKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	92.6
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	84.33
1a0p_A	290	Site-specific recombinase XERD; DNA binding, DNA r	81.41

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=92.60  E-value=0.75  Score=35.22  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=52.6

Q ss_pred             hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 028699           44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL  123 (205)
Q Consensus        44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL  123 (205)
                      .-+++|+.|..|+....  +.+...+..||.+|+.++-..|                          .+..++...+..|
T Consensus        25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l   76 (324)
T 1xo0_A           25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL   76 (324)
T ss_dssp             HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence            44578899999998763  3466778999999999875322                          3557899999999


Q ss_pred             HHHHHHhCCC-CCCCcchh
Q 028699          124 RAAYEEHGGR-PEANPFGA  141 (205)
Q Consensus       124 RAafEE~Gg~-pE~NPF~a  141 (205)
                      ++.|+-.+.. +..||+..
T Consensus        77 ~~~~~~~~~~~~~~np~~~   95 (324)
T 1xo0_A           77 NMLHRRSGLPRPSDSNAVS   95 (324)
T ss_dssp             HHHHHHHTSCCGGGSHHHH
T ss_pred             HHHHHHcCCCCCCcCHHHH
Confidence            9999987643 34688754

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=84.33  E-value=3.3  Score=28.61  Aligned_cols=68  Identities=10%  Similarity=0.062  Sum_probs=46.5

Q ss_pred             hhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028699           46 RRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA  125 (205)
Q Consensus        46 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA  125 (205)
                      +++++.|..||.... -..+...+..||.+|+.|+-..|                          .+..|+-..+.-||+
T Consensus        33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr~   85 (117)
T 3nrw_A           33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLKN   85 (117)
T ss_dssp             HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence            567888888887632 12566778889999998874311                          245677788888888


Q ss_pred             HHHHh--CCCCCCCcch
Q 028699          126 AYEEH--GGRPEANPFG  140 (205)
Q Consensus       126 afEE~--Gg~pE~NPF~  140 (205)
                      .|.-.  -|--+.||+.
T Consensus        86 f~~~l~~~g~i~~nP~~  102 (117)
T 3nrw_A           86 WLEYLARIDVVDEDLPE  102 (117)
T ss_dssp             HHHHHHHTTSSCTTSGG
T ss_pred             HHHHHHHcCCcccCHHH
Confidence            87643  2445678874

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1

Probab=81.41  E-value=4.4  Score=30.49  Aligned_cols=69  Identities=17%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             hhhhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHH
Q 028699           44 QKRRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL  123 (205)
Q Consensus        44 QKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRL  123 (205)
                      .-++.++.|..|+...  .+.+..-+..||.+|+.++-..                          ..+..++...+.-|
T Consensus        26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l   77 (290)
T 1a0p_A           26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV   77 (290)
T ss_dssp             HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence            3456788899999887  3467788899999999876421                          12456788889999


Q ss_pred             HHHHHHh--CCCCCCCcch
Q 028699          124 RAAYEEH--GGRPEANPFG  140 (205)
Q Consensus       124 RAafEE~--Gg~pE~NPF~  140 (205)
                      +++|+..  -+.-+.|||.
T Consensus        78 ~~~~~~~~~~~~i~~np~~   96 (290)
T 1a0p_A           78 RRLFQYLYREKFREDDPSA   96 (290)
T ss_dssp             HHHHHHHHHTTSSSSCTTS
T ss_pred             HHHHHHHHhCCCccCChhh
Confidence            9998854  2345678985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.73

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.73  E-value=9.7e-05  Score=52.29  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHHhcCCCCCCCCCcchhHhHHHhhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 028699           46 RRDWNTFCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA  125 (205)
Q Consensus        46 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA  125 (205)
                      ++||+.|.+|+.++.-  +...++..+|.+||.++-.-|                          .+..|+.--|.-||.
T Consensus        27 ~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi~R~lsair~   78 (110)
T d1f44a1          27 LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQLNM   78 (110)
T ss_dssp             HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHHHHHHHHHHH
Confidence            6799999999998864  456789999999999885433                          355689999999999


Q ss_pred             HHHHhCCCCCCCcchhhHHHHHHHHHHHHHHh
Q 028699          126 AYEEHGGRPEANPFGARAVRIFLREVRDFQAK  157 (205)
Q Consensus       126 afEE~Gg~pE~NPF~araVRlYLReVRd~QAk  157 (205)
                      .|...|-.   +|+.+..|++.|+-+|-..++
T Consensus        79 f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~  107 (110)
T d1f44a1          79 LHRRSGLP---RPSDSNAVSLVMRRIRKENVD  107 (110)
T ss_dssp             HHHHTTCC---CGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---CCcCCHHHHHHHHHccccccC
Confidence            99988753   799999999999998876654