Citrus Sinensis ID: 028724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MGSSYFGEPNLGNERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACNNYHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHRSHSMGSSSQNSESSDTQEVDLELRLSI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccEcccccccccccccccccccccccccccccEEEcccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mgssyfgepnlgnergssssssssrkgkksnsdkpkqpqrglgvaQLEKIRLHGqmacnnyhpitnsfhtpypttnfnqedmrvqtpyssipsssfsyssssspptsygyhpsitmglgdyerstiiygdsqptttatswnpvtgisetqhftqpnmnrhvlnlpvedpqlkrskkhrshsmgsssqnsessdtqEVDLELRLSI
Flexible Loop (DISEMBL)
mgssyfgepnlgnergssssssssrkgkksnsdkpkqpqrgLGVAQLEKIRLHGQMACNNYHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHrshsmgsssqnsessdtqevdlelrlsi
Low Complexity Region (SEG)
MGSSYFGEPNLGNErgssssssssrkgkksNSDKPKQPQRGLGVAQLEKIRLHGQMACNNYHPITNSFHTPYPTTNFNQEDMRVQTpyssipsssfsyssssspptsygyhpsITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKrskkhrshsmgsssqnsessDTQEVDLELRLSI
Disordered region (IsUnstruct)
*******************************************VAQLEKIRLHGQMACNNYHPITNSFHTPYP************************************YHPSITMGLGDYERSTIIYGDS*****ATSWNPVT*************************************************************
Disordered Region (DISOPRED)
*******************************************VAQLEKIRLHGQM**************************************************SYGYHPSITMGLGDYERSTII***********************************************************************LELRLSI
Disordered Region (DISEMBL)
******************************************GVAQLEKIRLHGQMACNNYHPITNSFHTPYPTTNFNQEDMRVQTP********************YGYHPSITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQ***************************DLELRLSI
Disordered Region (DISPRO)
***************************************RGLGVAQLEKIRLHGQMACNNYHPITNSFHTPYPTTNFNQEDMRVQTPYS***S**FSYSSSSSPPTSYGYHPSITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVED***************************EVDLELRLSI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSYFGEPNLGNERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACNNYHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHRSHSMGSSSQNSESSDTQEVDLELRLSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
225445164	195	PREDICTED: uncharacterized protein LOC10	0.946	0.994	0.684	1e-55
224119820	187	predicted protein [Populus trichocarpa]	0.897	0.983	0.653	1e-50
356496412	190	PREDICTED: uncharacterized protein LOC10	0.912	0.984	0.610	1e-43
224142167	225	predicted protein [Populus trichocarpa]	0.956	0.871	0.551	3e-41
363807942	185	uncharacterized protein LOC100804813 [Gl	0.892	0.989	0.608	5e-40
42569172	178	uncharacterized protein [Arabidopsis tha	0.829	0.955	0.488	4e-36
351727158	189	uncharacterized protein LOC100527788 [Gl	0.912	0.989	0.570	6e-36
356513155	220	PREDICTED: uncharacterized protein LOC10	0.926	0.863	0.585	6e-36
79488649	193	uncharacterized protein [Arabidopsis tha	0.902	0.958	0.516	1e-32
297832134	176	hypothetical protein ARALYDRAFT_480462 [	0.804	0.937	0.453	7e-32

>gi|225445164|ref|XP_002284090.1| PREDICTED: uncharacterized protein LOC100268083 [Vitis vinifera] gi|297738787|emb|CBI28032.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 159/206 (77%), Gaps = 12/206 (5%)

Query: 1   MGSSYFGEPNLGNERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACNN 60
           MGSSYFGEPN+GNER     S SSRKGKKSNSDKPKQPQRGLGVAQLEKIRLH QM C+ 
Sbjct: 1   MGSSYFGEPNMGNER-----SGSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHSQMGCS- 54

Query: 61  YHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSY-GYHPSITMGLG 119
           Y P   S H PYPTT  NQEDMRVQT YSS+PSSS    S SS  T+  G+HP++ MGL 
Sbjct: 55  YMP---SLHGPYPTT-LNQEDMRVQTAYSSVPSSSSFSYSPSSSSTASYGFHPNMMMGLS 110

Query: 120 DYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHRS 179
           + +RS I YGDSQP+TTA  WNP +G  ETQ ++Q NM RH+LNL VED   K+ KK RS
Sbjct: 111 EMDRSNIRYGDSQPSTTA-RWNPSSGTMETQQYSQLNMTRHLLNLEVEDSFQKKRKKDRS 169

Query: 180 HSMGSSSQNSESSDTQEVDLELRLSI 205
            S+GSSSQNSESSDTQE+DLELRLS+
Sbjct: 170 DSLGSSSQNSESSDTQELDLELRLSL 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119820|ref|XP_002331169.1| predicted protein [Populus trichocarpa] gi|222873252|gb|EEF10383.1| predicted protein [Populus trichocarpa]

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/208 (65%), Positives = 145/208 (69%), Gaps = 24/208 (11%)

Query: 1   MGSSYFGEPNLGN-ERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACN 59
           MGS YFGEPNLGN ERG SS     RKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMA +
Sbjct: 1   MGSGYFGEPNLGNNERGGSS-----RKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMASD 55

Query: 60  NYHPITNSFH-TPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSITMGL 118
            YHP   S H TPYPTT   QED+RVQT YS   +SS           S+GY P+  MGL
Sbjct: 56  -YHP---SLHRTPYPTTFNQQEDIRVQTGYSPTAASS----------ASFGY-PNFMMGL 100

Query: 119 GDYERSTIIYG-DSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKH 177
           GDY+R+ I YG D QP T A SWN    I E QH+ Q N  RH   L VED   K SKKH
Sbjct: 101 GDYDRTNIRYGGDFQPPTAA-SWNSGHNIYEAQHYAQANATRHPWPLQVEDTPQKHSKKH 159

Query: 178 RSHSMGSSSQNSESSDTQEVDLELRLSI 205
           RS SMGSSSQNSES DTQE+DLELRLSI
Sbjct: 160 RSSSMGSSSQNSESRDTQELDLELRLSI 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496412|ref|XP_003517062.1| PREDICTED: uncharacterized protein LOC100801080 [Glycine max]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 140/208 (67%), Gaps = 21/208 (10%)

Query: 1   MGSSYFGEPNLGNER-GSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACN 59
           M SSYFGEPN+GNER   SSSSSSSRKGKK+N DK KQPQRGLGVAQLEKIRLHGQMAC 
Sbjct: 1   MDSSYFGEPNMGNERVSGSSSSSSSRKGKKNNQDKSKQPQRGLGVAQLEKIRLHGQMACG 60

Query: 60  NYHPITNSFHTPYPTTNFNQEDMRVQT--PYSSIPSSSFSYSSSSSPPTSYGYHPSITMG 117
            YHP     H+PYP +NFN ED RVQT        SSS    SS+S   SYG+ P+I M 
Sbjct: 61  GYHP---PLHSPYP-SNFNNEDPRVQTPYSSVPSSSSSSFSYSSTSYSPSYGFQPNIVMS 116

Query: 118 LGDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKH 177
           L +YER++I YGDSQPT TA  W   T              R +LNL   D Q   +KKH
Sbjct: 117 LPEYERTSIRYGDSQPTNTA-RWEHSTA-----------QTRPLLNL--YDSQHIDTKKH 162

Query: 178 RSHSMGSSSQNSESSDTQEVDLELRLSI 205
           RS S G SSQNSESSDTQE DLELRLS+
Sbjct: 163 RSGSRGESSQNSESSDTQEPDLELRLSL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142167|ref|XP_002324430.1| predicted protein [Populus trichocarpa] gi|222865864|gb|EEF02995.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 145/234 (61%), Gaps = 38/234 (16%)

Query: 1   MGSSYFGEPNLGN-ERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACN 59
           M S YFGEPN GN ERG SS     RKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQM CN
Sbjct: 1   MDSGYFGEPNFGNNERGGSS-----RKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMGCN 55

Query: 60  NYHPITNSFHTPYPTTNFNQEDMRVQT-------------------------PYS---SI 91
            YHP  +S  TPYPTT   QED+RVQT                         P++    +
Sbjct: 56  -YHPPLHS--TPYPTTFNPQEDIRVQTGYSSAPSSSFSYSSSAAATSASYGYPHTMEEEL 112

Query: 92  PSSSFSYSSSSSPPTSYGYHPSITMGLGDYERSTIIYGDSQPTTTATSWNPVTGISETQH 151
              S ++S +   P           G  DY+ + I YGDSQP+TTA SWN   GI E QH
Sbjct: 113 KLISLTFSHNMPCPKIINLTWYCRWGSVDYDGTNIRYGDSQPSTTA-SWNSGHGIHEAQH 171

Query: 152 FTQPNMNRHVLNLPVEDPQLKRSKKHRSHSMGSSSQNSESSDTQEVDLELRLSI 205
           + QPN  RH+L L  ED   K+SKKHRS S GSSSQNSE+SDTQE+DLELRLSI
Sbjct: 172 YAQPNSTRHLLPLQAEDTPPKKSKKHRSSSRGSSSQNSEASDTQELDLELRLSI 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807942|ref|NP_001242709.1| uncharacterized protein LOC100804813 [Glycine max] gi|255641547|gb|ACU21047.1| unknown [Glycine max]

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 141/207 (68%), Gaps = 24/207 (11%)

Query: 1   MGSSYFGEPNLGNERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACNN 60
           M SSYFGEPN+GNER S SSSSSSRKG+K+N DKPKQPQRGLGVAQLEKIRLHGQMAC  
Sbjct: 1   MDSSYFGEPNMGNERVSGSSSSSSRKGRKNNQDKPKQPQRGLGVAQLEKIRLHGQMACGG 60

Query: 61  YHPITNSFHTPYPTTNFNQEDMRVQTPY--SSIPSSSFSYSSSSSPPTSYGYHPSITMGL 118
           YHP       PYP +NFN ED RVQTPY      SS    SSS+S   SYG+ P+I M L
Sbjct: 61  YHP-------PYP-SNFNNEDPRVQTPYLSVPSSSSFSYSSSSTSYSPSYGFQPNIMMSL 112

Query: 119 GDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHR 178
            +YER+ I YGDSQPT  A  W         +H T     R +LNL   D Q   +KK+ 
Sbjct: 113 PEYERTNIGYGDSQPTNIA-RW---------EHSTA--QTRPLLNL--YDSQHIDTKKYI 158

Query: 179 SHSMGSSSQNSESSDTQEVDLELRLSI 205
           S S G+SSQNSESSDTQE DLELRLS+
Sbjct: 159 SGSGGASSQNSESSDTQEPDLELRLSL 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569172|ref|NP_179598.2| uncharacterized protein [Arabidopsis thaliana] gi|28204820|gb|AAO37152.1| hypothetical protein [Arabidopsis thaliana] gi|50058891|gb|AAT69190.1| hypothetical protein At2g20080 [Arabidopsis thaliana] gi|330251868|gb|AEC06962.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  156 bits (395), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/213 (48%), Positives = 136/213 (63%), Gaps = 43/213 (20%)

Query: 1   MGSSYFGEPNL------GNERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHG 54
           MGS++FG PN+       +   SSSSS ++R+GKK+ S+KPKQPQRGLGVAQLEKIRLHG
Sbjct: 1   MGSTFFGRPNVVGSSPPSSSPTSSSSSPATRRGKKNGSEKPKQPQRGLGVAQLEKIRLHG 60

Query: 55  QMACNNYHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSI 114
           +M+CN+++    S    YP     QED+R+Q  YSSIP      S SS+P   YG++P++
Sbjct: 61  EMSCNSFNSYNPSL---YP-----QEDVRMQGGYSSIP------SQSSAP---YGFYPNM 103

Query: 115 TMGL--GDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLK 172
            MG+    Y+R+T+            SWNP  GI E+QH  +PN+ RH LN   EDP   
Sbjct: 104 MMGVHRDQYDRATM------------SWNPSYGILESQHSLEPNITRHFLN---EDPS-- 146

Query: 173 RSKKHRSHSMGSSSQNSESSDTQEVDLELRLSI 205
            S   RS S+GS  Q+S SS+ QEVDLELRLS+
Sbjct: 147 -STTRRSKSLGSGIQHSGSSENQEVDLELRLSL 178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727158|ref|NP_001237407.1| uncharacterized protein LOC100527788 [Glycine max] gi|255633212|gb|ACU16962.1| unknown [Glycine max]

 Score =  156 bits (394), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/207 (57%), Positives = 140/207 (67%), Gaps = 20/207 (9%)

Query: 1   MGSSYFGEPNLGNERGSSSSSSSSRKGKKSN-SDK-PKQPQRGLGVAQLEKIRLHGQMAC 58
           MGSSYFG+PNLGNER +S SSSS+RKGKK+N SDK PKQPQRGLGVAQLEKIRLHG    
Sbjct: 1   MGSSYFGKPNLGNER-ASGSSSSTRKGKKNNNSDKLPKQPQRGLGVAQLEKIRLHG---- 55

Query: 59  NNYHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSITMGL 118
             YHP   S   P   +NF  ED RVQ   S   SSS + S +     SYG+ P+I MGL
Sbjct: 56  --YHP---SLRAPNYPSNFTNEDPRVQIASSFSYSSSSTSSYA----ASYGFQPNIMMGL 106

Query: 119 GDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHR 178
            +Y+++ I Y DSQPT  A  W   + I E+Q+    N+ R  LNL   D Q    +KHR
Sbjct: 107 SEYQKTNIRYEDSQPTNIA-RWETASVILESQYSAPSNIARPFLNL--NDTQ-DIDRKHR 162

Query: 179 SHSMGSSSQNSESSDTQEVDLELRLSI 205
           + S+GSSSQNSESSDTQE+DLELRLS+
Sbjct: 163 NGSVGSSSQNSESSDTQELDLELRLSL 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513155|ref|XP_003525279.1| PREDICTED: uncharacterized protein LOC100779060 isoform 1 [Glycine max]

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 120/205 (58%), Positives = 141/205 (68%), Gaps = 15/205 (7%)

Query: 1   MGSSYFGEPNLGNERGSSSSSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACNN 60
           MGSSYFGEPN GNER S SSSS   K K  NSDKPKQPQRGLGVAQLEKIRLHG      
Sbjct: 31  MGSSYFGEPNFGNERASCSSSSRKGK-KSHNSDKPKQPQRGLGVAQLEKIRLHG------ 83

Query: 61  YHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPSITMGLGD 120
           YHP   S H PYP +NF+ ED RVQ   +     S S+S SSS   SYG+ P+I MGL +
Sbjct: 84  YHP---SLHAPYP-SNFSNEDPRVQI--AYSSVPSSSFSYSSSYAASYGFQPNIMMGLSE 137

Query: 121 YERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLKRSKKHRSH 180
           Y+++ I YGDSQPT TA  W   + I E+Q+    N+ R  LNL  +  Q   ++KHR+ 
Sbjct: 138 YQKTNIRYGDSQPTNTA-RWETTSVILESQYSAPSNIARPFLNLN-DTHQDIDTRKHRNG 195

Query: 181 SMGSSSQNSESSDTQEVDLELRLSI 205
           S+GSSSQNSESSDTQE+DLELRLS+
Sbjct: 196 SVGSSSQNSESSDTQELDLELRLSL 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79488649|ref|NP_194613.4| uncharacterized protein [Arabidopsis thaliana] gi|48310064|gb|AAT41746.1| At4g28840 [Arabidopsis thaliana] gi|50198849|gb|AAT70453.1| At4g28840 [Arabidopsis thaliana] gi|332660153|gb|AEE85553.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 139/211 (65%), Gaps = 26/211 (12%)

Query: 1   MGSSYFGEPNLGNERGSSSSSSS---SRKGKKSN-SDKPKQPQRGLGVAQLEKIRLHGQM 56
           MGSS+FG P +G    SS +SSS   +++GK  N SDKPKQPQRGLGVAQLEKIRLHG+ 
Sbjct: 1   MGSSFFGRPKMGGSSSSSPTSSSSSPAKRGKNKNGSDKPKQPQRGLGVAQLEKIRLHGEY 60

Query: 57  ACNNYHPITNSFHTPYPTTNFNQEDMRVQ--TPYSSIPSSSFSYSSSSSPPTSYGYHPSI 114
            CN++    N++ + +P+T   QED+R+Q   P     S SFSY+SSS PP  YG+HP++
Sbjct: 61  NCNSF----NTYPSYHPST--YQEDVRIQGGYPSIPSSSPSFSYASSSPPPAPYGFHPNM 114

Query: 115 TMGLGD--YERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLK 172
            M   +  YER+TI YGDSQP   A SWNP  GI E+QHF +PN  RH L+   ED    
Sbjct: 115 MMNANNDQYERTTIRYGDSQP-HRAPSWNPSYGILESQHFVEPNTTRHFLH---ED---- 166

Query: 173 RSKKHRSHSMGSSSQNSESSDTQEVDLELRL 203
                R+ S+GS  QN E+S+  E+DLELRL
Sbjct: 167 ----QRNISLGSGIQNFETSEANELDLELRL 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832134|ref|XP_002883949.1| hypothetical protein ARALYDRAFT_480462 [Arabidopsis lyrata subsp. lyrata] gi|297329789|gb|EFH60208.1| hypothetical protein ARALYDRAFT_480462 [Arabidopsis lyrata subsp. lyrata]

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 130/214 (60%), Gaps = 49/214 (22%)

Query: 3   SSYFGEPNLGNERGSSSSSS------SSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQM 56
           SS+FG PN+G    SSSS +      ++R+GKK+ SDKPKQPQRGLGVAQLEKIRLHG+M
Sbjct: 1   SSFFGRPNMGGSSPSSSSPTSSSSSPATRRGKKNGSDKPKQPQRGLGVAQLEKIRLHGEM 60

Query: 57  AC---NNYHPITNSFHTPYPTTNFNQEDMRVQTPYSSIPSSSFSYSSSSSPPTSYGYHPS 113
           +C   NNY+P      + YP     QED+R+Q  YS         S  S   + YG++P+
Sbjct: 61  SCNSFNNYNP------SLYP-----QEDVRMQGGYS---------SIPSQSSSPYGFYPN 100

Query: 114 ITMGL--GDYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQL 171
           + MG+    YER+T+            SWNP  GI E+QH  +PN+ RHVL+      ++
Sbjct: 101 MMMGVHRDQYERATM------------SWNPSYGILESQHSLEPNITRHVLH------EV 142

Query: 172 KRSKKHRSHSMGSSSQNSESSDTQEVDLELRLSI 205
                 RS S+GS +Q+S SS+ QE+DLELRLS+
Sbjct: 143 LTLSTRRSKSLGSGNQHSGSSENQELDLELRLSL 176

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2117828	193	TIE1 "TCP Interactor containin	0.902	0.958	0.369	2.9e-25
TAIR|locus:2061629	178	TIE2 "TCP Interactor containin	0.375	0.432	0.450	3.9e-24

TAIR|locus:2117828 TIE1 "TCP Interactor containing EAR motif protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 78/211 (36%), Positives = 98/211 (46%)

Query:     1 MGSSYFGEPNLGNEXXXXXXXXXXXXXXXXN----SDKPKQPQRGLGVAQLEKIRLHGQM 56
             MGSS+FG P +G                       SDKPKQPQRGLGVAQLEKIRLHG+ 
Sbjct:     1 MGSSFFGRPKMGGSSSSSPTSSSSSPAKRGKNKNGSDKPKQPQRGLGVAQLEKIRLHGEY 60

Query:    57 ACNNYHPITNSFHTPYPTTNFNQEDMRVQTXXXXXXXXXXXXXXXXXXXXXXXXXXXITM 116
              CN++    N++ + +P+T   QED+R+Q                              M
Sbjct:    61 NCNSF----NTYPSYHPSTY--QEDVRIQGGYPSIPSSSPSFSYASSSPPPAPYGFHPNM 114

Query:   117 GLG----DYERSTIIYGDSQPTTTATSWNPVTGISETQHFTQPNMNRHVLNLPVEDPQLK 172
              +      YER+TI YGDSQP   A SWNP  GI E+QHF +PN  RH L+   ED +  
Sbjct:   115 MMNANNDQYERTTIRYGDSQPHR-APSWNPSYGILESQHFVEPNTTRHFLH---EDQR-- 168

Query:   173 XXXXXXXXXXXXXXXXXXXXDTQEVDLELRL 203
                                 +  E+DLELRL
Sbjct:   169 ------NISLGSGIQNFETSEANELDLELRL 193

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2061629 TIE2 "TCP Interactor containing EAR motif protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 41/91 (45%), Positives = 53/91 (58%)

Query:     1 MGSSYFGEPNL-GNEXXXXXXXXXXXXXXXXN-----SDKPKQPQRGLGVAQLEKIRLHG 54
             MGS++FG PN+ G+                       S+KPKQPQRGLGVAQLEKIRLHG
Sbjct:     1 MGSTFFGRPNVVGSSPPSSSPTSSSSSPATRRGKKNGSEKPKQPQRGLGVAQLEKIRLHG 60

Query:    55 QMACNNYHPITNSFHTPYPTTNFNQEDMRVQ 85
             +M+CN+++    S    YP     QED+R+Q
Sbjct:    61 EMSCNSFNSYNPSL---YP-----QEDVRMQ 83

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF08744	314	NOZZLE: Plant transcription factor NOZZLE; InterPr	99.14

>PF08744 NOZZLE: Plant transcription factor NOZZLE; InterPro: IPR014855 NOZZLE is a transcription factor that plays a role in patterning the proximal-distal and adaxial-abaxial axes [, ]

Probab=99.14  E-value=1.3e-11  Score=110.50  Aligned_cols=40  Identities=38%  Similarity=0.555  Sum_probs=33.5

Q ss_pred             CCCCcccCCCCCCCCCCCCCCCcchhhhhhhhhccccccc
Q 028724           20 SSSSSRKGKKSNSDKPKQPQRGLGVAQLEKIRLHGQMACN   59 (205)
Q Consensus        20 ~~~s~r~~kk~~~~k~kqpqRGlGVAqLEkiRl~~~~~~~   59 (205)
                      +.|+++..||.+..+||+|||||||||||+||||||++..
T Consensus        42 sr~Rkp~sk~~q~~QKk~~qRGmGVAQLErlRieE~~K~~   81 (314)
T PF08744_consen   42 SRGRKPGSKKCQQKQKKPPQRGMGVAQLERLRIEEEKKKI   81 (314)
T ss_pred             ccccCCccccchhcccCCccccccHHHHHHHHHHHHHhhh
Confidence            3455666666677899999999999999999999998765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00