Citrus Sinensis ID: 028742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESGGGLSHVE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEcccccccccEEEEccHHHHcccccccccccccccEEEEEEccccEEEEEEEEEcccccccccEEEEEEccccccccccccccccEEEEEEccccccEEEEccccccccccEEEEEEEccccccEEEEEEEEEEEEEcccccccEEEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHcccccEEEEccccccccHHHEccHHHHcccccccEEccccccEEEEEEEccccEEEEEEEEEEccccccccEEEEEEcccccccccHccccccEEEEEcccccccEEEcEEEEEEEcEEEEEEEEEccccccEEEEEEEEEEEcccccccccEEEEEEEccccccHccccccccccccccc
Coil and Loop (DISEMBL)
maclhdhscedhdcssdwslykhidlskvsalneavpgsVKSVFKAWEQRLNssgehlesndgdpellvyipfttdvkiksisivggadgtspskMRVFINregidfsdaqDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANItlhfpdnfggdttqIHYIGLKGEATQLKRDVVATIVYElrpnpsdhktksesggglshve
Flexible Loop (DISEMBL)
maclhdhscedhdcsSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSsgehlesndgdPELLVYIPFTTDVKIKSisivggadgtspskMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYelrpnpsdhktksesggglshve
Low Complexity Region (SEG)
MAclhdhscedhdcssdWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESGGGLSHVE
Disordered region (IsUnstruct)
************DCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWE*****************ELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYEL*********************
Disordered Region (DISOPRED)
***************SDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRL********SNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNP*****************
Disordered Region (DISEMBL)
*************CSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNP*****************
Disordered Region (DISPRO)
***************SDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPS*H**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESGGGLSHVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9VK68	211	PITH domain-containing pr	yes	no	0.955	0.924	0.42	1e-34
Q29L80	211	PITH domain-containing pr	yes	no	0.955	0.924	0.4	4e-34
Q9GZP4	211	PITH domain-containing pr	yes	no	0.838	0.810	0.436	5e-34
Q8BWR2	211	PITH domain-containing pr	yes	no	0.838	0.810	0.431	9e-34
Q54Z24	202	PITH domain-containing pr	yes	no	0.931	0.940	0.414	3e-33
Q6DJI5	209	PITH domain-containing pr	N/A	no	0.843	0.822	0.417	1e-32
Q95ZI6	208	PITH domain-containing pr	yes	no	0.906	0.889	0.389	1e-32
Q6NYX8	210	PITH domain-containing pr	yes	no	0.857	0.833	0.393	6e-30
Q9P7A1	207	PITH domain-containing pr	yes	no	0.877	0.864	0.347	2e-22
Q9SQZ9	176	PITH domain-containing pr	no	no	0.691	0.801	0.333	1e-09

>sp|Q9VK68|PITH1_DROME PITH domain-containing protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 120/200 (60%), Gaps = 5/200 (2%)

Query: 2   ACLHDHSCEDH--DCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLE 59
            C H+ S  DH  +   ++SLY  IDL  V  LNE   G  KSVFK +E+R + S +++E
Sbjct: 11  GCSHEASDVDHALEMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQDLS-KYVE 69

Query: 60  SNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEW 119
           S D D ELL  IPFT ++K+K I I G  D + P+ +++F NR  + F DA+  +  QE+
Sbjct: 70  S-DADEELLFNIPFTGNIKLKGIIISGANDDSHPNMVKIFKNRPRMTFDDAR-AKPDQEF 127

Query: 120 DLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATI 179
            L  + +G +EY  +   F SV +++L+FP NFG D T+I+YIGL+GE T+     V   
Sbjct: 128 QLTRDARGEIEYSPKVVTFSSVHHLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTIC 187

Query: 180 VYELRPNPSDHKTKSESGGG 199
            YE R N +DHK K+  G G
Sbjct: 188 NYESRANAADHKEKAFDGVG 207

Drosophila melanogaster (taxid: 7227)

>sp|Q29L80|PITH1_DROPS PITH domain-containing protein GA19395 OS=Drosophila pseudoobscura pseudoobscura GN=GA19395 PE=3 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 117/200 (58%), Gaps = 5/200 (2%)

Query: 2   ACLHDHSCEDH--DCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLE 59
            C H+ +  DH  +   ++SLY  ID   +  LNE   GS K+VFK +E R + S     
Sbjct: 11  GCGHEATDVDHALEMGIEYSLYTKIDAENLECLNEETEGSGKTVFKPYESRQDMS--KFV 68

Query: 60  SNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEW 119
            +D D ELL  IPFT ++K+K I I G  D + P+K+++F NR  + F DA+ ++  QE+
Sbjct: 69  QSDADEELLFNIPFTGNIKLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAK-VKVDQEF 127

Query: 120 DLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATI 179
           +L  + +G +EY  +   F SV ++TL+FP NFG D T+I+YIGL+GE ++     V   
Sbjct: 128 ELTRDPRGEIEYSPKVVNFSSVHHLTLYFPSNFGDDKTRIYYIGLRGEFSEAHYHGVTIC 187

Query: 180 VYELRPNPSDHKTKSESGGG 199
            YE R N +DHK K   G G
Sbjct: 188 NYEARANAADHKDKVFDGVG 207

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9GZP4|PITH1_HUMAN PITH domain-containing protein 1 OS=Homo sapiens GN=PITHD1 PE=1 SV=1

 Score =  144 bits (362), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/174 (43%), Positives = 111/174 (63%), Gaps = 3/174 (1%)

Query: 18  WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
           + LY  IDL ++  LNE+  GS + VFK WE+R + S + +ES D D ELL  IPFT +V
Sbjct: 29  YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRS-KFVES-DADEELLFNIPFTGNV 86

Query: 78  KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
           K+K I I+G  D + PS+MR++ N   + F D +  +  Q + L  +L G LEY T+ S+
Sbjct: 87  KLKGIIIMGEDDDSHPSEMRLYKNIPQMSFDDTE-REPDQTFSLNRDLTGELEYATKISR 145

Query: 138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 191
           F +V ++++H   NFG DTT++ YIGL+GE T+L+R  V    YE   NP+DH+
Sbjct: 146 FSNVYHLSIHISKNFGADTTKVFYIGLRGEWTELRRHEVTICNYEASANPADHR 199

Homo sapiens (taxid: 9606)

>sp|Q8BWR2|PITH1_MOUSE PITH domain-containing protein 1 OS=Mus musculus GN=Pithd1 PE=2 SV=1

 Score =  143 bits (360), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 75/174 (43%), Positives = 111/174 (63%), Gaps = 3/174 (1%)

Query: 18  WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
           + LY  IDL ++  LNE+  GS + VFK WE+R + S + +ES D D ELL  IPFT +V
Sbjct: 29  YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRS-KFVES-DADEELLFNIPFTGNV 86

Query: 78  KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
           K+K + I+G  D + PS+MR++ N   + F D +  +  Q + L  ++ G LEY T+ S+
Sbjct: 87  KLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDTE-REPEQTFSLNRDITGELEYATKISR 145

Query: 138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 191
           F +V ++++H   NFG DTT+I YIGL+GE T+L+R  V    YE   NP+DH+
Sbjct: 146 FSNVYHLSIHISKNFGADTTKIFYIGLRGEWTELRRHEVTICNYEASANPADHR 199

Mus musculus (taxid: 10090)

>sp|Q54Z24|PITH1_DICDI PITH domain-containing protein 1 OS=Dictyostelium discoideum GN=DDB_G0277951 PE=3 SV=1

 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/198 (41%), Positives = 124/198 (62%), Gaps = 8/198 (4%)

Query: 5   HDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGD 64
           H H  +D     ++SL +++D   ++ LNE V GSV+ +FK+WE R +   +H   +  D
Sbjct: 10  HSHGVDD---GIEYSLNRYLDTGTITCLNEKVKGSVRHIFKSWEDRHDL--KHFVESCDD 64

Query: 65  PELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVEN 124
            EL++ IPF    +IKSI I+GG  G+SP+KM+ +IN   IDF +       QEW+L E+
Sbjct: 65  EELIINIPFGAVTQIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNINSFACTQEWNLHED 124

Query: 125 LQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELR 184
            +G + Y T+ +KF ++ ++TL+FP NFG  TT+I++I LKG  T  KR++V T VYE +
Sbjct: 125 FEGQIGYSTKPTKFNNINHLTLYFPSNFGSPTTKIYFIALKGVYTSAKREIVNT-VYESK 183

Query: 185 PNPSDHKTKSESGGGLSH 202
           P   DH  KS+   G+SH
Sbjct: 184 PQLQDH--KSDIFNGVSH 199

Dictyostelium discoideum (taxid: 44689)

>sp|Q6DJI5|PITH1_XENLA PITH domain-containing protein 1 OS=Xenopus laevis GN=pithd1 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 112/175 (64%), Gaps = 3/175 (1%)

Query: 17  DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTD 76
           ++ L++ IDL K+  LNE+  GS +SVF+AWE+R N     +ES+D D ELL  IPFT +
Sbjct: 26  EYGLFRKIDLDKLQCLNESREGSGRSVFRAWEER-NDRTRFVESDD-DEELLFNIPFTGN 83

Query: 77  VKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYS 136
           VK+K I ++G    T P+++R+F N   + F D    +A Q + L  ++ G LEY T+ +
Sbjct: 84  VKLKGIVLIGEDSDTHPAELRLFKNVPHMSFDDT-GREADQTFSLNIDVNGNLEYPTKIA 142

Query: 137 KFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 191
           +F +V+++++H   NFG + T+I+YIGL+GE T+  R  V    YE   NP+DHK
Sbjct: 143 RFSNVSHLSIHISKNFGAENTKIYYIGLRGEWTEAHRHEVTICNYEAAANPADHK 197

Xenopus laevis (taxid: 8355)

>sp|Q95ZI6|PITH1_CAEEL PITH domain-containing protein ZK353.9 OS=Caenorhabditis elegans GN=ZK353.9 PE=3 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 122/203 (60%), Gaps = 18/203 (8%)

Query: 3   CLHDHSCEDHDCSSD------------WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQR 50
           C H HS   H+C+++            + +  +ID+ KV+ LNE+V G+ K VFK  E+R
Sbjct: 2   CSHGHS---HNCAAEHIPEVPGDDVYRYDMVSYIDMEKVTTLNESVDGAGKKVFKVMEKR 58

Query: 51  LNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDA 110
            +   E++ES D D ELL  IPFT  V++  +SI+G  DG+ P+K+R+F +RE + F D 
Sbjct: 59  -DDRLEYVES-DCDHELLFNIPFTGHVRLTGLSIIGDEDGSHPAKIRLFKDREAMSFDDC 116

Query: 111 QDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQ 170
             ++A QE DL ++ QG+++Y  + SKF ++ N+++    NFG D T+I+YIGL+GE   
Sbjct: 117 S-IEADQEIDLKQDPQGLVDYPLKASKFGNIHNLSILVDANFGEDETKIYYIGLRGEFQH 175

Query: 171 LKRDVVATIVYELRPNPSDHKTK 193
             R  +A   YE R    DHK +
Sbjct: 176 EFRQRIAIATYESRAQLKDHKNE 198

Caenorhabditis elegans (taxid: 6239)

>sp|Q6NYX8|PITH1_DANRE PITH domain-containing protein 1 OS=Danio rerio GN=pithd1 PE=2 SV=1

 Score =  130 bits (327), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 109/178 (61%), Gaps = 3/178 (1%)

Query: 17  DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTD 76
           ++ LY+ ID+ K+  LNE+  G  K VFK W+QR + + + +ES D D ELL  IPFT  
Sbjct: 27  EYELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRN-KFVES-DADEELLFNIPFTGS 84

Query: 77  VKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYS 136
           VK+K I I G  D + P+++R+F N   + F D    +  Q + L  + +  LEY T+ +
Sbjct: 85  VKLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTS-REPEQAFRLNRDPRAELEYPTKIA 143

Query: 137 KFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKS 194
           +F +V ++++H   NFG ++T+++YIGL+GE T+  R  V    YE   NP+DHK +S
Sbjct: 144 RFSNVEHLSIHVSRNFGAESTRVYYIGLRGEYTEAHRHEVTICNYEAAANPADHKVES 201

Danio rerio (taxid: 7955)

>sp|Q9P7A1|PITH1_SCHPO PITH domain-containing protein P35G2.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP35G2.02 PE=3 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 98/187 (52%), Gaps = 8/187 (4%)

Query: 9   CEDHDCSS--DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPE 66
           C++H   S  + +LY  I    +  LNEAVP S K VFK W+ R + +   +  +D D +
Sbjct: 11  CDEHPFESGPNDTLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDTD--IVESDADDQ 68

Query: 67  LLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQ 126
           LL  +PF     +KSI +    + T+P    +F NR  +DF    D+QA + ++     +
Sbjct: 69  LLFQVPFAGAATLKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFE 128

Query: 127 G--VLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEATQLKRDVVATIVYEL 183
           G  + E+  +   +Q++ N+ + F  + G  D TQI YIGL+G     K D V TI YE 
Sbjct: 129 GSHIFEFPVKTRLYQNLQNLNIFFTKSDGSDDPTQIAYIGLRGSFVPFKGDPVVTI-YEA 187

Query: 184 RPNPSDH 190
            P PSDH
Sbjct: 188 TPRPSDH 194

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9SQZ9|PITH1_ARATH PITH domain-containing protein At3g04780 OS=Arabidopsis thaliana GN=At3g04780 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 24/165 (14%)

Query: 20  LYKHIDLSKVSALNEA----VPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTT 75
           L   ID S V  LN++    +P ++K  ++  E      G +LES D D +LL+YIPF  
Sbjct: 16  LLDFIDWSGVECLNQSSSHSLPNALKQGYREDE------GLNLES-DADEQLLIYIPFNQ 68

Query: 76  DVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLV-ENLQG---VLEY 131
            +K+ S +I  G +   P  ++ F N+E + FS+  D       +L  ENL+G   VL  
Sbjct: 69  VIKLHSFAI-KGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVL-- 125

Query: 132 QTRYSKFQSVANITLHFPDN-FGGDTTQIHYIGLKG---EATQLK 172
             +Y KFQ+V ++T+    N  G + T++  I L G   E T +K
Sbjct: 126 --KYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMK 168

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
351725681	204	uncharacterized protein LOC100305543 [Gl	1.0	1.0	0.911	1e-109
357447127	204	Thioredoxin family protein [Medicago tru	0.995	0.995	0.906	1e-107
449450338	204	PREDICTED: PITH domain-containing protei	1.0	1.0	0.882	1e-105
388506694	204	unknown [Lotus japonicus]	0.995	0.995	0.891	1e-105
224141623	204	predicted protein [Populus trichocarpa]	1.0	1.0	0.882	1e-104
225429450	204	PREDICTED: PITH domain-containing protei	1.0	1.0	0.867	1e-104
18400986	204	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.852	1e-103
297822053	204	hypothetical protein ARALYDRAFT_901284 [	1.0	1.0	0.848	1e-102
197312903	204	hypothetical protein [Rheum australe]	1.0	1.0	0.852	1e-102
357135232	205	PREDICTED: PITH domain-containing protei	0.995	0.990	0.817	2e-99

>gi|351725681|ref|NP_001236845.1| uncharacterized protein LOC100305543 [Glycine max] gi|255625863|gb|ACU13276.1| unknown [Glycine max]

 Score =  397 bits (1021), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/204 (91%), Positives = 199/204 (97%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           MACLHDHSCEDHDCSS+WSLYKHIDLSKV+ALNEA PGSVKSVFKAWE+RL+SSG HLES
Sbjct: 1   MACLHDHSCEDHDCSSNWSLYKHIDLSKVTALNEANPGSVKSVFKAWEERLDSSGVHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPELLV+IPFT+DVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQ MQAIQEWD
Sbjct: 61  NEGDPELLVFIPFTSDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQSMQAIQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           LVEN+QGVLEYQTRYSKFQSVANITLHFP+NFGGDTT+IHYIG KGEATQLKRDVVATIV
Sbjct: 121 LVENMQGVLEYQTRYSKFQSVANITLHFPENFGGDTTKIHYIGFKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YEL PNPSDHKT++ESGGGLSH+E
Sbjct: 181 YELMPNPSDHKTRAESGGGLSHIE 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447127|ref|XP_003593839.1| Thioredoxin family protein [Medicago truncatula] gi|355482887|gb|AES64090.1| Thioredoxin family protein [Medicago truncatula] gi|388495170|gb|AFK35651.1| unknown [Medicago truncatula]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/203 (90%), Positives = 194/203 (95%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           MAC+HDHSCEDHDCSSDWSLYKHIDL KVSALNEA PGSVKSVFKAWE RLN+SGEHLES
Sbjct: 1   MACVHDHSCEDHDCSSDWSLYKHIDLEKVSALNEATPGSVKSVFKAWEHRLNTSGEHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPEL+V+IPFT+DVKIKSISIVGGADGTSPSKMR FINR+GIDFSDAQ MQAIQEWD
Sbjct: 61  NEGDPELIVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L ENLQGVLEYQTRYSKFQ V NITLHFPDNFGGDTT+IHYIGLKGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSKFQGVGNITLHFPDNFGGDTTKIHYIGLKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHV 203
           YEL PNPSDHKT++ESGGGLSHV
Sbjct: 181 YELMPNPSDHKTRAESGGGLSHV 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450338|ref|XP_004142920.1| PREDICTED: PITH domain-containing protein 1-like [Cucumis sativus] gi|449494405|ref|XP_004159538.1| PREDICTED: PITH domain-containing protein 1-like [Cucumis sativus]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 192/204 (94%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           MACLHDHSCEDHDCSSDWSLYKHIDL +VSALNEA PGSVKSVFKAWE RLNSSG+HLES
Sbjct: 1   MACLHDHSCEDHDCSSDWSLYKHIDLPRVSALNEATPGSVKSVFKAWEHRLNSSGDHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPELLV+IPFT+DVKIKSISI+GG DGTSPSKMRVFINREGIDFSDAQ MQA+QEWD
Sbjct: 61  NEGDPELLVFIPFTSDVKIKSISIIGGPDGTSPSKMRVFINREGIDFSDAQSMQAVQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L ENLQGVLEYQTRYSKFQ V NITLHFPDN+GGDTTQIHYIGLKGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSKFQGVGNITLHFPDNYGGDTTQIHYIGLKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YE+ PNPSDHKT++E G G S+VE
Sbjct: 181 YEITPNPSDHKTRAEGGAGFSNVE 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506694|gb|AFK41413.1| unknown [Lotus japonicus]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/203 (89%), Positives = 193/203 (95%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           M+CLHDHSCEDHDCS+DWSLYKHIDLSKVSALNEA PGSVKSVFKAWE RLNSSG HLES
Sbjct: 1   MSCLHDHSCEDHDCSTDWSLYKHIDLSKVSALNEATPGSVKSVFKAWEDRLNSSGGHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPELLV+IPFT+DVKIKSISIVGGADGTSPSKMR FINR+GIDFSDAQ MQAIQEWD
Sbjct: 61  NEGDPELLVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L EN+QGVLEYQTRYSKFQSV NITLHFP++FGGDTT+IHYIG KGEATQLKRDVVATIV
Sbjct: 121 LAENMQGVLEYQTRYSKFQSVGNITLHFPESFGGDTTKIHYIGFKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHV 203
           YE+ PNPSDHKT +ESGGGLSHV
Sbjct: 181 YEITPNPSDHKTHAESGGGLSHV 203

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141623|ref|XP_002324166.1| predicted protein [Populus trichocarpa] gi|118488151|gb|ABK95895.1| unknown [Populus trichocarpa] gi|222865600|gb|EEF02731.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/204 (88%), Positives = 192/204 (94%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           MAC+HDHSCEDHDCSS+WSLYKHIDL KVSALNEAVPGS KSVFKAWE RL+SS  HLES
Sbjct: 1   MACVHDHSCEDHDCSSNWSLYKHIDLPKVSALNEAVPGSAKSVFKAWEHRLDSSAGHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPELLVYIPFT+DVKIKSISIVGGADGTSPSKMR FINR+GIDFSDAQ MQA+QEWD
Sbjct: 61  NEGDPELLVYIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAVQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           LVENL GVLE+QTRY+KFQSVA+ITLHFPDNFGGDT+QIHYIG KGEATQLKRDVVATIV
Sbjct: 121 LVENLNGVLEFQTRYAKFQSVASITLHFPDNFGGDTSQIHYIGFKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YEL PNPSDHKTK+ESGGG S VE
Sbjct: 181 YELMPNPSDHKTKAESGGGYSQVE 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429450|ref|XP_002277123.1| PREDICTED: PITH domain-containing protein 1 [Vitis vinifera] gi|296081613|emb|CBI20618.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/204 (86%), Positives = 193/204 (94%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           MACLHDHSCEDHDC++DWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSS  HLES
Sbjct: 1   MACLHDHSCEDHDCAADWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSEGHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           NDGDPELLV+IPFT+DVKIKSIS+VGGADGTSP KMR FINR+GIDFSDAQ MQ+IQEWD
Sbjct: 61  NDGDPELLVFIPFTSDVKIKSISVVGGADGTSPCKMRAFINRDGIDFSDAQSMQSIQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L ENLQG+LEYQTRYS+FQ VA++TLHFP+NFGG+TTQI YIGLKGEATQLKRDVVATIV
Sbjct: 121 LAENLQGMLEYQTRYSRFQGVASLTLHFPENFGGETTQIRYIGLKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YE+ PNPSDHKTK++SG G SHVE
Sbjct: 181 YEITPNPSDHKTKADSGAGFSHVE 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400986|ref|NP_565614.1| uncharacterized protein [Arabidopsis thaliana] gi|20197269|gb|AAC31240.2| expressed protein [Arabidopsis thaliana] gi|20197367|gb|AAM15044.1| expressed protein [Arabidopsis thaliana] gi|21593506|gb|AAM65473.1| unknown [Arabidopsis thaliana] gi|29028814|gb|AAO64786.1| At2g25950 [Arabidopsis thaliana] gi|110742984|dbj|BAE99386.1| hypothetical protein [Arabidopsis thaliana] gi|330252682|gb|AEC07776.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/204 (85%), Positives = 193/204 (94%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           M+C HDH+CEDH+CSSDWSLYKHIDLSKVSALNE+V GS KSVFKAWEQRL+SSGEHLES
Sbjct: 1   MSCTHDHNCEDHECSSDWSLYKHIDLSKVSALNESVSGSAKSVFKAWEQRLHSSGEHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPELLV++PFT+DVKIKSISIVGG +GTSPSK+RVFINREGIDFSDA+ MQA+QEW+
Sbjct: 61  NEGDPELLVFVPFTSDVKIKSISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWE 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L ENLQGVLEYQTRYSKFQSV NITLHFP++FGGDTTQI YIG KGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSKFQSVGNITLHFPESFGGDTTQIRYIGFKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YE+RPNPSDHKTK+E+GGG S VE
Sbjct: 181 YEIRPNPSDHKTKAETGGGFSQVE 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822053|ref|XP_002878909.1| hypothetical protein ARALYDRAFT_901284 [Arabidopsis lyrata subsp. lyrata] gi|297324748|gb|EFH55168.1| hypothetical protein ARALYDRAFT_901284 [Arabidopsis lyrata subsp. lyrata]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/204 (84%), Positives = 192/204 (94%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           M+C HDH+CEDH+CSSDWSLYKHIDLSKVSALNE+V GS KSVFKAWE+RL SSGEHLES
Sbjct: 1   MSCTHDHNCEDHECSSDWSLYKHIDLSKVSALNESVSGSAKSVFKAWEERLQSSGEHLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPELLV++PFT+DVKIKSISIVGG +GTSPSK+RVFINREGIDFSDA+ MQA+QEW+
Sbjct: 61  NEGDPELLVFVPFTSDVKIKSISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWE 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L ENLQGVLEYQTRYSKFQSV NITLHFP++FGGDTTQI YIG KGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSKFQSVGNITLHFPESFGGDTTQIRYIGFKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YE+RPNPSDHKTK+E+GGG S VE
Sbjct: 181 YEIRPNPSDHKTKAETGGGFSQVE 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197312903|gb|ACH63232.1| hypothetical protein [Rheum australe]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/204 (85%), Positives = 191/204 (93%)

Query: 1   MACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLES 60
           MACLHDHSCEDHDCSSDWSLYKHIDL KV+ALNEAV GSVKSVF+AWEQRL+ S  +LES
Sbjct: 1   MACLHDHSCEDHDCSSDWSLYKHIDLPKVNALNEAVAGSVKSVFRAWEQRLSLSEGYLES 60

Query: 61  NDGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWD 120
           N+GDPEL+V+IPFT+DVKIKSIS+VGGADGTSPSKMR FINR+GIDFSDAQ MQA+QEWD
Sbjct: 61  NEGDPELIVFIPFTSDVKIKSISVVGGADGTSPSKMRAFINRDGIDFSDAQSMQAVQEWD 120

Query: 121 LVENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIV 180
           L ENLQGVLEYQTRYS+FQ V N+TLHFPDNFG DTTQIHYIGLKGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSRFQGVGNLTLHFPDNFGADTTQIHYIGLKGEATQLKRDVVATIV 180

Query: 181 YELRPNPSDHKTKSESGGGLSHVE 204
           YEL PNPSDHKT++E+GGGLS +E
Sbjct: 181 YELMPNPSDHKTRAETGGGLSQIE 204

Source: Rheum australe

Species: Rheum australe

Genus: Rheum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357135232|ref|XP_003569215.1| PREDICTED: PITH domain-containing protein 1-like [Brachypodium distachyon]

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 166/203 (81%), Positives = 189/203 (93%)

Query: 2   ACLHDHSCEDHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESN 61
           ACLHDH+CEDH+C++DWSLY HID+ KV ALNE+VPGSVKSVFK WEQRL +SG  LESN
Sbjct: 3   ACLHDHACEDHNCAADWSLYNHIDIPKVVALNESVPGSVKSVFKPWEQRLETSGGFLESN 62

Query: 62  DGDPELLVYIPFTTDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDL 121
           +GDPELL++IPFT+DVKIKSIS+VGGADGTSPS+MRVFINREGIDFSDAQ+MQ +QEW+L
Sbjct: 63  EGDPELLIFIPFTSDVKIKSISVVGGADGTSPSRMRVFINREGIDFSDAQNMQPVQEWEL 122

Query: 122 VENLQGVLEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVY 181
            ENLQGVLEYQTRYS+FQ VAN+TLHFPDNFGGD T+I+YIGL+GEATQ KRDVVATIVY
Sbjct: 123 AENLQGVLEYQTRYSRFQGVANLTLHFPDNFGGDATKIYYIGLRGEATQNKRDVVATIVY 182

Query: 182 ELRPNPSDHKTKSESGGGLSHVE 204
           E+ PNPSDHKTKSE+GGG SHVE
Sbjct: 183 EVMPNPSDHKTKSETGGGFSHVE 205

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2057432	204	AT2G25950 "AT2G25950" [Arabido	0.916	0.916	0.860	3.3e-86
DICTYBASE|DDB_G0277951	202	DDB_G0277951 "UPF0424 family p	0.882	0.891	0.437	1.1e-37
MGI|MGI:1913443	211	Pithd1 "PITH (C-terminal prote	0.838	0.810	0.431	5.2e-33
FB|FBgn0032445	211	CG6153 [Drosophila melanogaste	0.877	0.848	0.434	8.5e-33
UNIPROTKB|Q29L80	211	GA19395 "PITH domain-containin	0.877	0.848	0.423	1.8e-32
ZFIN|ZDB-GENE-040426-2366	210	pithd1 "PITH (C-terminal prote	0.852	0.828	0.395	1e-29
ASPGD|ASPL0000055891	227	AN1364 [Emericella nidulans (t	0.823	0.740	0.361	1.4e-23
POMBASE|SPBP35G2.02	207	SPBP35G2.02 "proteasome intera	0.852	0.840	0.364	6.1e-23
FB|FBgn0035631	287	Txl "Thioredoxin-like" [Drosop	0.656	0.466	0.356	1.4e-13
TAIR|locus:2084883	176	AT3G04780 [Arabidopsis thalian	0.725	0.840	0.329	3.4e-13

TAIR|locus:2057432 AT2G25950 "AT2G25950" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 161/187 (86%), Positives = 177/187 (94%)

Query:    18 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             WSLYKHIDLSKVSALNE+V GS KSVFKAWEQRL+SSGEHLESN+GDPELLV++PFT+DV
Sbjct:    18 WSLYKHIDLSKVSALNESVSGSAKSVFKAWEQRLHSSGEHLESNEGDPELLVFVPFTSDV 77

Query:    78 KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
             KIKSISIVGG +GTSPSK+RVFINREGIDFSDA+ MQA+QEW+L ENLQGVLEYQTRYSK
Sbjct:    78 KIKSISIVGGPEGTSPSKLRVFINREGIDFSDAESMQAVQEWELAENLQGVLEYQTRYSK 137

Query:   138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESG 197
             FQSV NITLHFP++FGGDTTQI YIG KGEATQLKRDVVATIVYE+RPNPSDHKTK+E+G
Sbjct:   138 FQSVGNITLHFPESFGGDTTQIRYIGFKGEATQLKRDVVATIVYEIRPNPSDHKTKAETG 197

Query:   198 GGLSHVE 204
             GG S VE
Sbjct:   198 GGFSQVE 204

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0277951 DDB_G0277951 "UPF0424 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 81/185 (43%), Positives = 120/185 (64%)

Query:    18 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             +SL +++D   ++ LNE V GSV+ +FK+WE R +     +ES D D EL++ IPF    
Sbjct:    20 YSLNRYLDTGTITCLNEKVKGSVRHIFKSWEDR-HDLKHFVESCD-DEELIINIPFGAVT 77

Query:    78 KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
             +IKSI I+GG  G+SP+KM+ +IN   IDF +       QEW+L E+ +G + Y T+ +K
Sbjct:    78 QIKSIIIIGGDGGSSPNKMKAYINNSNIDFGNINSFACTQEWNLHEDFEGQIGYSTKPTK 137

Query:   138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESG 197
             F ++ ++TL+FP NFG  TT+I++I LKG  T  KR++V T VYE +P   DHK  S+  
Sbjct:   138 FNNINHLTLYFPSNFGSPTTKIYFIALKGVYTSAKREIVNT-VYESKPQLQDHK--SDIF 194

Query:   198 GGLSH 202
              G+SH
Sbjct:   195 NGVSH 199

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1913443 Pithd1 "PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1" [Mus musculus (taxid:10090)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 75/174 (43%), Positives = 111/174 (63%)

Query:    18 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             + LY  IDL ++  LNE+  GS + VFK WE+R + S + +ES D D ELL  IPFT +V
Sbjct:    29 YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRS-KFVES-DADEELLFNIPFTGNV 86

Query:    78 KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
             K+K + I+G  D + PS+MR++ N   + F D +  +  Q + L  ++ G LEY T+ S+
Sbjct:    87 KLKGVIIMGEDDDSHPSEMRLYKNIPQMSFDDTE-REPEQTFSLNRDITGELEYATKISR 145

Query:   138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHK 191
             F +V ++++H   NFG DTT+I YIGL+GE T+L+R  V    YE   NP+DH+
Sbjct:   146 FSNVYHLSIHISKNFGADTTKIFYIGLRGEWTELRRHEVTICNYEASANPADHR 199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0032445 CG6153 [Drosophila melanogaster (taxid:7227)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 79/182 (43%), Positives = 112/182 (61%)

Query:    18 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             +SLY  IDL  V  LNE   G  KSVFK +E+R + S +++ES D D ELL  IPFT ++
Sbjct:    29 YSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQDLS-KYVES-DADEELLFNIPFTGNI 86

Query:    78 KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
             K+K I I G  D + P+ +++F NR  + F DA+  +  QE+ L  + +G +EY  +   
Sbjct:    87 KLKGIIISGANDDSHPNMVKIFKNRPRMTFDDAR-AKPDQEFQLTRDARGEIEYSPKVVT 145

Query:   138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESG 197
             F SV +++L+FP NFG D T+I+YIGL+GE T+     V    YE R N +DHK K+  G
Sbjct:   146 FSSVHHLSLYFPSNFGEDITRIYYIGLRGEFTEAHYHGVTICNYESRANAADHKEKAFDG 205

Query:   198 GG 199
              G
Sbjct:   206 VG 207

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|Q29L80 GA19395 "PITH domain-containing protein GA19395" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 77/182 (42%), Positives = 112/182 (61%)

Query:    18 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             +SLY  ID   +  LNE   GS K+VFK +E R + S + ++S D D ELL  IPFT ++
Sbjct:    29 YSLYTKIDAENLECLNEETEGSGKTVFKPYESRQDMS-KFVQS-DADEELLFNIPFTGNI 86

Query:    78 KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
             K+K I I G  D + P+K+++F NR  + F DA+ ++  QE++L  + +G +EY  +   
Sbjct:    87 KLKGIIICGANDDSHPNKVKIFKNRPKMTFDDAK-VKVDQEFELTRDPRGEIEYSPKVVN 145

Query:   138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSESG 197
             F SV ++TL+FP NFG D T+I+YIGL+GE ++     V    YE R N +DHK K   G
Sbjct:   146 FSSVHHLTLYFPSNFGDDKTRIYYIGLRGEFSEAHYHGVTICNYEARANAADHKDKVFDG 205

Query:   198 GG 199
              G
Sbjct:   206 VG 207

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-2366 pithd1 "PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 70/177 (39%), Positives = 108/177 (61%)

Query:    18 WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             + LY+ ID+ K+  LNE+  G  K VFK W+QR + + + +ES D D ELL  IPFT  V
Sbjct:    28 YELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRN-KFVES-DADEELLFNIPFTGSV 85

Query:    78 KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
             K+K I I G  D + P+++R+F N   + F D    +  Q + L  + +  LEY T+ ++
Sbjct:    86 KLKGIIISGEDDESHPAEIRLFKNIPQMSFDDTS-REPEQAFRLNRDPRAELEYPTKIAR 144

Query:   138 FQSVANITLHFPDNFGGDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKS 194
             F +V ++++H   NFG ++T+++YIGL+GE T+  R  V    YE   NP+DHK +S
Sbjct:   145 FSNVEHLSIHVSRNFGAESTRVYYIGLRGEYTEAHRHEVTICNYEAAANPADHKVES 201

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000055891 AN1364 [Emericella nidulans (taxid:162425)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 64/177 (36%), Positives = 101/177 (57%)

Query:    20 LYKHIDLSKVSALNEAVPGSVKSVFK-AWEQRLNSSGEHLESNDGDPELLVYIPFTTDVK 78
             LY  I    ++ LNEA P S  ++ K  W +R N + E LES D D +LL+YIPFT  V 
Sbjct:    37 LYSQIRFDSITTLNEATPQSGAAIVKKTWAERQNDTPE-LES-DADEQLLMYIPFTGQVN 94

Query:    79 IKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQG--VLEYQTRYS 136
             + SI I      ++P  +++F NR+ +DFS A +++  Q  ++ + + G  V E     +
Sbjct:    95 VHSILIYTAPTPSAPRTLKLFKNRDDLDFSTASELKPTQTIEVPQPIPGTDVFELPLNRA 154

Query:   137 KFQSVANITLHFPDNFG-GD--TTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDH 190
              + +  ++TL F DN+  G+   T++ YIGLKG+   L R+ V+  +YE   NP+DH
Sbjct:   155 HWNATTSVTLFFEDNWSRGEEEVTKVGYIGLKGQFMALNREPVS-FLYEAAANPNDH 210

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPBP35G2.02 SPBP35G2.02 "proteasome interacting protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 66/181 (36%), Positives = 96/181 (53%)

Query:    19 SLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVK 78
             +LY  I    +  LNEAVP S K VFK W+ R + + + +ES D D +LL  +PF     
Sbjct:    23 TLYSCIRKESIVTLNEAVPDSGKLVFKPWDLRYDDT-DIVES-DADDQLLFQVPFAGAAT 80

Query:    79 IKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQG--VLEYQTRYS 136
             +KSI +    + T+P    +F NR  +DF    D+QA + ++     +G  + E+  +  
Sbjct:    81 LKSILVRIFPNETAPHSFSLFPNRTDLDFDTIGDVQATETFEFPLTFEGSHIFEFPVKTR 140

Query:   137 KFQSVANITLHFPDNFGGDT-TQIHYIGLKGEATQLKRDVVATIVYELRPNPSDH-KTKS 194
              +Q++ N+ + F  + G D  TQI YIGL+G     K D V TI YE  P PSDH K   
Sbjct:   141 LYQNLQNLNIFFTKSDGSDDPTQIAYIGLRGSFVPFKGDPVVTI-YEATPRPSDHPKVNQ 199

Query:   195 E 195
             E
Sbjct:   200 E 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010498 "proteasomal protein catabolic process" evidence=ISM

FB|FBgn0035631 Txl "Thioredoxin-like" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 52/146 (35%), Positives = 78/146 (53%)

Query:    24 IDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSIS 83
             I   +   LNEA   ++K    AW     S+G +L+S D D +L++ I F   VKI+S+ 
Sbjct:   129 ISKQECECLNEADDHNLKH---AWP----SAGGYLQS-DCDEQLILSITFNQAVKIQSLK 180

Query:    84 IVGGADGTSPSKMRVFINR-EGIDFSDAQDMQAIQEWDLVEN-LQGVLEYQTRYSKFQSV 141
                 +    P  +++FIN+   IDF  A+ M ++Q+  L +  L+  +    RY KFQ+V
Sbjct:   181 FKAPSH-LGPKDVKLFINQPRTIDFDMAESMNSVQDLSLAQKELESGVPVNLRYVKFQNV 239

Query:   142 ANITLHFPDN-FGGDTTQIHYIGLKG 166
              NI +   +N  GGD TQI YIG  G
Sbjct:   240 QNIQIFVKNNQSGGDVTQIDYIGFIG 265

GO:0015036 "disulfide oxidoreductase activity" evidence=ISS

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

TAIR|locus:2084883 AT3G04780 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 52/158 (32%), Positives = 80/158 (50%)

Query:    20 LYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKI 79
             L   ID S V  LN++   S+ +  K   +     G +LES D D +LL+YIPF   +K+
Sbjct:    16 LLDFIDWSGVECLNQSSSHSLPNALKQGYRE--DEGLNLES-DADEQLLIYIPFNQVIKL 72

Query:    80 KSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVE-NLQGVLEYQTRYSKF 138
              S +I G  +   P  ++ F N+E + FS+  D       +L E NL+G      +Y KF
Sbjct:    73 HSFAIKGPEE-EGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGK-PVVLKYVKF 130

Query:   139 QSVANITLHFPDN-FGGDTTQIHYIGLKG---EATQLK 172
             Q+V ++T+    N  G + T++  I L G   E T +K
Sbjct:   131 QNVRSLTIFIEANQSGSEVTKVQKIALYGSTVETTDMK 168

GO:0005737 "cytoplasm" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54Z24	PITH1_DICDI	No assigned EC number	0.4141	0.9313	0.9405	yes	no
Q29L80	PITH1_DROPS	No assigned EC number	0.4	0.9558	0.9241	yes	no
Q8BWR2	PITH1_MOUSE	No assigned EC number	0.4310	0.8382	0.8104	yes	no
Q9VK68	PITH1_DROME	No assigned EC number	0.42	0.9558	0.9241	yes	no
Q9P7A1	PITH1_SCHPO	No assigned EC number	0.3475	0.8774	0.8647	yes	no
Q95ZI6	PITH1_CAEEL	No assigned EC number	0.3891	0.9068	0.8894	yes	no
Q9GZP4	PITH1_HUMAN	No assigned EC number	0.4367	0.8382	0.8104	yes	no
Q6NYX8	PITH1_DANRE	No assigned EC number	0.3932	0.8578	0.8333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam06201	151	pfam06201, PITH, PITH domain	5e-64

>gnl|CDD|218936 pfam06201, PITH, PITH domain

 Score =  194 bits (495), Expect = 5e-64
 Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 5/153 (3%)

Query: 19  SLYKHIDLSKVSALNEAVPGSV-KSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
           SLY  IDL KV  LNE+  GS  KS+FK W++RL+    +LES D D +LL+ IPFT  V
Sbjct: 1   SLYSQIDLDKVECLNESDEGSGAKSLFKPWDERLDPE-PYLES-DADEQLLINIPFTQPV 58

Query: 78  KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVE-NLQGVLEYQTRYS 136
           K+ SI I G  D ++P  +++FIN   +DF DA+D+   Q  +L E + +G +EY  +Y 
Sbjct: 59  KLHSILIRGLDDDSAPKTIKLFINPPNLDFDDAEDLTPTQTLELSESDDEGGVEYPLKYV 118

Query: 137 KFQSVANITLHFPDNFGG-DTTQIHYIGLKGEA 168
           KFQ+V ++T+ F DNFG  +TT+I YIGL+GE 
Sbjct: 119 KFQNVNSLTIFFEDNFGEDETTRIDYIGLRGEP 151

This family was formerly known as DUF1000. The full-length, Txnl1, protein which is a probable component of the 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1730	206	consensus Thioredoxin-like protein [Posttranslatio	100.0
PF06201	152	PITH: PITH domain; InterPro: IPR010400 The full-le	100.0
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	100.0
PF07738	135	Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I	97.58
cd08366	139	APC10 APC10 subunit of the anaphase-promoting comp	97.05
cd08667	131	APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri	96.79
cd08159	129	APC10-like APC10-like DOC1 domains in E3 ubiquitin	96.4
cd08666	134	APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H	96.05
PF03256	193	APC10: Anaphase-promoting complex, subunit 10 (APC	95.61
cd08665	131	APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit	95.14
cd08365	131	APC10-like1 APC10-like DOC1 domains of E3 ubiquiti	94.3
KOG3437	184	consensus Anaphase-promoting complex (APC), subuni	93.95
PF14652	329	DUF4457: Domain of unknown function (DUF4457)	93.0
cd08664	152	APC10-HERC2 APC10-like DOC1 domain present in HERC	91.98
COG5156	189	DOC1 Anaphase-promoting complex (APC), subunit 10	91.8
KOG2687	414	consensus Spindle pole body protein, contains UNC-	91.54

>KOG1730 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-64  Score=414.42  Aligned_cols=192  Identities=54%  Similarity=0.843  Sum_probs=182.3

Q ss_pred             CCCCCCCCCCCCC------CCCccccccccccccceEEcCCCCCcccccccccccccCCCCcceecCCCCCceEEEeecC
Q 028742            1 MACLHDHSCEDHD------CSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFT   74 (204)
Q Consensus         1 ~~~~h~~~c~~~~------~~~~~~L~~~ID~~~v~cLNe~~~~~~~~v~k~~~~r~d~~~~~l~S~D~DeQLii~IpF~   74 (204)
                      |+|+|+|+|++..      .+..++||++||+.+|+||||+.++++|.|||||+.|.|...| ||| |+|+|||++|||+
T Consensus         1 mshghsH~c~a~~~e~p~e~g~~ysLys~Idle~v~~LNEsv~gsgK~VFKpwe~R~d~se~-vES-DaD~eLLfniPFt   78 (206)
T KOG1730|consen    1 MSHGHSHNCAAEREEHPEERGLAYSLYSRIDLEKVQTLNESVDGSGKSVFKPWEKRTDRSEY-VES-DADEELLFNIPFT   78 (206)
T ss_pred             CCCCCCCCcchhcccCchhcCccccceeEecHhHheecccccCCccccccchhhhhcchhhh-hhc-cCCceeEEecccc
Confidence            7899999998874      4889999999999999999999999999999999999999988 999 9999999999999


Q ss_pred             CceeEEEEEEEcCCCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceEEEeccccCcccccEEEEEEcCCCCC
Q 028742           75 TDVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGG  154 (204)
Q Consensus        75 ~~Vkl~sI~I~~~~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~e~~Lk~~KFqnV~sLtif~~~N~g~  154 (204)
                      +.|||++|+|.+.+++++|.+||||+||+.|||||++. +|+|++.|..+..|.++||+|.+|||||.+|+|||+.|+|+
T Consensus        79 g~vkLkgI~I~g~~d~shP~~~rlFkNR~~m~FdD~~~-~~dqef~lt~d~~g~iey~~K~s~f~nv~nLsi~f~~nfG~  157 (206)
T KOG1730|consen   79 GNVKLKGISIMGEPDGSHPSKMRLFKNREQMDFDDAEA-EPDQEFSLTRDLTGEIEYPTKISKFQNVHNLSIHFPKNFGE  157 (206)
T ss_pred             CceeEEEEEEEeCCCCCCchheEeecCCccCCcchhhc-CcceecceecccCceEEeccceeeeccceeEEEEeccccCC
Confidence            99999999999999999999999999999999999998 58999999999899999999999999999999999999999


Q ss_pred             CeeEEEEEEEEeEEcCccccceEEeeeecCCCCCCCccccc
Q 028742          155 DTTQIHYIGLKGEATQLKRDVVATIVYELRPNPSDHKTKSE  195 (204)
Q Consensus       155 e~t~I~~Igl~G~~~~~~r~~v~t~vYE~~~np~Dhk~~~~  195 (204)
                      |.|+|+||||||+++.+.|..+..|.||++|||+||++..-
T Consensus       158 D~TqI~YIGlRGeft~~~~h~~~i~~yea~a~~~dh~~~~~  198 (206)
T KOG1730|consen  158 DTTQIYYIGLRGEFTELFRHEVAICNYEARANPADHKVHQV  198 (206)
T ss_pred             CcceEEEEEecceeeehhcCCceEEEEeccCChhhCccccc
Confidence            99999999999999998887666559999999999997643

>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome

Probab=100.00  E-value=8.7e-56  Score=358.80  Aligned_cols=147  Identities=47%  Similarity=0.806  Sum_probs=114.7

Q ss_pred             ccccccccccceEEcCCCCCccc-ccccccccccCCCCcceecCCCCCceEEEeecCCceeEEEEEEEcC-CCCCCCceE
Q 028742           19 SLYKHIDLSKVSALNEAVPGSVK-SVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG-ADGTSPSKM   96 (204)
Q Consensus        19 ~L~~~ID~~~v~cLNe~~~~~~~-~v~k~~~~r~d~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~-~~~~~Pk~i   96 (204)
                      ||+++||+++++|||++..++++ .++|+|++|++. .| |+| |+|+||||||||+++||||||+|+++ +++++|++|
T Consensus         1 sL~~~Id~~~~~cLN~~~~~~~~~~l~k~~~~r~d~-~~-l~S-D~D~QLii~IpF~~~Vkl~si~i~~~~~~~~~P~~i   77 (152)
T PF06201_consen    1 SLYSYIDLDKVECLNEDDPHSARNNLFKPWDDRLDP-PF-LES-DADEQLIIHIPFTQPVKLHSIIIKGPPDDDSAPKTI   77 (152)
T ss_dssp             ESCCCB-TTT-EECSS-TTS-SCCCCSTTS--TTS-----EE--SS-SSEEEEEEEEEEEEEEEEEEE---STTTSEEEE
T ss_pred             ChHHhCcccccEEEeCCCCCCccceeEcccccccCc-cc-ccc-CCCceeEEEEccCCceEEEEEEEEeccCCCCCCeEE
Confidence            69999999999999999999999 899999999987 77 999 99999999999999999999999999 899999999


Q ss_pred             EEeec-CCCCCccccccCCcceEEEeec-cccceEEEeccccCcccccEEEEEEcCCCC-CCeeEEEEEEEEeEE
Q 028742           97 RVFIN-REGIDFSDAQDMQAIQEWDLVE-NLQGVLEYQTRYSKFQSVANITLHFPDNFG-GDTTQIHYIGLKGEA  168 (204)
Q Consensus        97 Klf~N-~p~ldFd~~~~~~p~Q~~~L~~-~~~g~~e~~Lk~~KFqnV~sLtif~~~N~g-~e~t~I~~Igl~G~~  168 (204)
                      |||+| +++|||+++++.+|+|+++|++ +..+.++||||++|||||++|||||++|+| ++.|+|+||||+|++
T Consensus        78 Klf~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~KFqnV~sLtif~~~n~g~~~~T~I~~i~l~G~~  152 (152)
T PF06201_consen   78 KLFINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLKFVKFQNVNSLTIFFEDNQGGDDVTRIYYIGLRGEF  152 (152)
T ss_dssp             EEEES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--TTT-TTEEEEEEEEEEETT--SS-EESEEEEEEE-
T ss_pred             EEEECCCCCcCccccccCCCCceEEcCccccCCceEeeeeeeccCCccEEEEEEeCCcCCCccEEEEEEEEEeeC
Confidence            99999 7899999999999999999976 667889999999999999999999999999 679999999999985

PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9e-40  Score=281.41  Aligned_cols=165  Identities=33%  Similarity=0.481  Sum_probs=148.4

Q ss_pred             CCCccccccccccccceEEcCCCCCcccccccccccccCCCCcceecCCCCCceEEEeecCCceeEEEEEEEcCCCCCCC
Q 028742           14 CSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTSP   93 (204)
Q Consensus        14 ~~~~~~L~~~ID~~~v~cLNe~~~~~~~~v~k~~~~r~d~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~~~~~~P   93 (204)
                      ..++++|..+||..+++|||+.++|..++.+|.+     -..+ |+| |+||||||+|||+|+||+|||.|+++..+.+|
T Consensus       119 ~Kgq~dL~~~I~~~gleclNqsddH~l~nalkk~-----~ss~-les-D~DeQl~isi~fnq~vk~hS~a~k~p~~~~~P  191 (288)
T KOG0908|consen  119 VKGQMDLKPFIDKVGLECLNQSDDHFLKNALKKN-----FSSN-LES-DCDEQLIISIPFNQAVKVHSIAIKGPANPLGP  191 (288)
T ss_pred             ccceehhhhhhhhhcceeeccccccchHHHHhhc-----cccc-eec-ccccceEEEeeccCccceeeeecCCCCCCCCC
Confidence            4579999999999999999999999999999863     2355 999 99999999999999999999999999888999


Q ss_pred             ceEEEeecCC-CCCccccccCCcceEEEeeccccceEEEeccccCcccccEEEEEEcCCCCC-CeeEEEEEEEEeEEcCc
Q 028742           94 SKMRVFINRE-GIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEATQL  171 (204)
Q Consensus        94 k~iKlf~N~p-~ldFd~~~~~~p~Q~~~L~~~~~g~~e~~Lk~~KFqnV~sLtif~~~N~g~-e~t~I~~Igl~G~~~~~  171 (204)
                      |.||||+|+| +|||+++++.+|+|.++|.+.......++||++|||||++|+||+++|+|+ |.|||.|||++|+    
T Consensus       192 k~vkifin~pr~~~F~~a~~f~ptQ~lel~e~~~~~~~V~lryvkfqnV~sv~iFiq~n~gg~evtri~~~~~~Gs----  267 (288)
T KOG0908|consen  192 KTVKIFINQPRTMDFENAESFEPTQLLELTELDLQGLPVPLRYVKFQNVNSVQIFIQSNQGGEEVTRISKLGLFGS----  267 (288)
T ss_pred             eeEEEEecCccccCcccccccCcccccchhhhhccCceEEeeeeeEEEeeEEEEEEecCCCCcccceeeeeeeccc----
Confidence            9999999998 799999999999999999664333567999999999999999999999987 4999999999997    


Q ss_pred             cccceEEeeeecCCCCCCCcccccCCC
Q 028742          172 KRDVVATIVYELRPNPSDHKTKSESGG  198 (204)
Q Consensus       172 ~r~~v~t~vYE~~~np~Dhk~~~~~~~  198 (204)
                         |+.+      +|+.|.|..++..+
T Consensus       268 ---Pv~~------t~m~~~krv~~k~g  285 (288)
T KOG0908|consen  268 ---PVPT------TNMNDFKRVEGKKG  285 (288)
T ss_pred             ---cCCC------CCCCcceecccccC
Confidence               7777      78999998766544

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development

Probab=97.58  E-value=0.0015  Score=51.22  Aligned_cols=92  Identities=21%  Similarity=0.256  Sum_probs=56.5

Q ss_pred             CCceEEEeecCCceeEEEEEEEcCC-----CCCCCceEEEeecCCCC--------CccccccCCcceEEEeeccccceEE
Q 028742           64 DPELLVYIPFTTDVKIKSISIVGGA-----DGTSPSKMRVFINREGI--------DFSDAQDMQAIQEWDLVENLQGVLE  130 (204)
Q Consensus        64 DeQLii~IpF~~~Vkl~sI~I~~~~-----~~~~Pk~iKlf~N~p~l--------dFd~~~~~~p~Q~~~L~~~~~g~~e  130 (204)
                      ...--+-|-|.++|.+.+|.|.-..     -.+|||.++||.=....        .|.=..+..+.|+|.|+..      
T Consensus        29 g~~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~------  102 (135)
T PF07738_consen   29 GSKGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRP------  102 (135)
T ss_dssp             TT-EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS-------
T ss_pred             CCceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccC------
Confidence            5555677788999999999998542     46899999999765432        2221122345666666443      


Q ss_pred             EeccccCcccccEEEEEEcCCCCCC-eeEEEEEEEEeE
Q 028742          131 YQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGLKGE  167 (204)
Q Consensus       131 ~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl~G~  167 (204)
                            .=+-+..|.|-|.+|+|++ .|-||++.+.|+
T Consensus       103 ------~~~~~~~i~l~i~sN~G~~~ytclyr~rVhG~  134 (135)
T PF07738_consen  103 ------PRQPVRYIKLRILSNHGNEEYTCLYRFRVHGE  134 (135)
T ss_dssp             -------S--EEEEEEEE--BSS-SSEEEE-EEEEEEE
T ss_pred             ------chhcCcEEEEEEEcCCCCCceEEEEEEEEEee
Confidence                  2115667888899999987 899999999997

The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.

>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

Probab=97.05  E-value=0.016  Score=46.62  Aligned_cols=106  Identities=20%  Similarity=0.275  Sum_probs=81.6

Q ss_pred             CCCCcceecCCCCCceEEEeecCCceeEEEEEEEcC---CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccce
Q 028742           52 NSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG---ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGV  128 (204)
Q Consensus        52 d~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~---~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~  128 (204)
                      +.+.| =|| |.-..=.|.|-|...|.|+.|.|-..   ++...|++|.+++=...      .+.....+++|.+. .|+
T Consensus        27 ~~~Ty-WQS-Dg~qPH~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~------~dl~e~~~v~l~~p-~Gw   97 (139)
T cd08366          27 SLDTY-WQS-DGPQPHLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRAGTSP------HDLQEVRTVELEEP-NGW   97 (139)
T ss_pred             CCCcc-CCC-CCCCCEEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEEECCc------CchhheEEEEcCCC-CEE
Confidence            34556 899 66556688899999999999988753   45679999999986542      23345667777655 789


Q ss_pred             EEEecccc---CcccccEEEEEEcCCCCC-CeeEEEEEEEEe
Q 028742          129 LEYQTRYS---KFQSVANITLHFPDNFGG-DTTQIHYIGLKG  166 (204)
Q Consensus       129 ~e~~Lk~~---KFqnV~sLtif~~~N~g~-e~t~I~~Igl~G  166 (204)
                      +-++|.-.   +...+.-|.|-|..|+.+ --|+|.-|.++|
T Consensus        98 v~i~l~~~~~~~~~~~~~iqi~I~~nh~nG~DthiR~iki~g  139 (139)
T cd08366          98 VHIPLEDNRDGKPLRTFFLQIAILSNHQNGRDTHIRQIKVYG  139 (139)
T ss_pred             EEEEccCCCCCCeeEEEEEEEEEecccCCCCCcceeeeEecC
Confidence            88988764   677778999999999854 479999998886

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the

>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs

Probab=96.79  E-value=0.03  Score=44.70  Aligned_cols=104  Identities=19%  Similarity=0.281  Sum_probs=76.0

Q ss_pred             CCCcceecCCCC-CceEEEeecCCceeEEEEEEEcC--CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceE
Q 028742           53 SSGEHLESNDGD-PELLVYIPFTTDVKIKSISIVGG--ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVL  129 (204)
Q Consensus        53 ~~~~~l~S~D~D-eQLii~IpF~~~Vkl~sI~I~~~--~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~  129 (204)
                      .+.| =|| |-- ..=.|+|-|..-|-|+.|.|...  ++...|++|+|++=..   |.|+   +...++++++...|++
T Consensus        24 ~~TY-WQS-DG~q~pH~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~~G~~---~~dL---~e~~~v~l~~~~~Gwv   95 (131)
T cd08667          24 TSTY-WQS-DGSARSHWIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVSVGRS---ASSL---QEVRDVHIPSNVTGYV   95 (131)
T ss_pred             CCcc-Ccc-CCCCCCeEEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEEecCC---Hhhh---eeeEEEEcCCCCceeE
Confidence            3456 899 654 24688999999999999988763  4567999999998432   3333   3456677754446787


Q ss_pred             EEeccccCcccccEEEEEEcCCCCCC-eeEEEEEEEEe
Q 028742          130 EYQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGLKG  166 (204)
Q Consensus       130 e~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl~G  166 (204)
                      .++....  ....-|.|.|..|..+. -|+|.-|.++|
T Consensus        96 ~l~~~~~--~~~~~iqI~I~~nhqnG~DthIRgiki~G  131 (131)
T cd08667          96 TLLENAN--ISYLVVQINIKRCHSDGCDTRIHGLKTIG  131 (131)
T ss_pred             EEEcCCc--eEEEEEEEEeHHhccCCccceeeEEEEcC
Confidence            7755433  56678999999998544 79999999987

This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.

>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=96.40  E-value=0.072  Score=42.43  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=74.2

Q ss_pred             CCCcceecCCCCCceEEEeecCCceeEEEEEEEcC--CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceEE
Q 028742           53 SSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG--ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLE  130 (204)
Q Consensus        53 ~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~--~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~e  130 (204)
                      .+.| =+|+..-++..|.+-|...|.|+.|.|...  ++...|++|.+++=..   |.|+   +...++++.+. .|++.
T Consensus        24 ~~ty-WQSdG~qphh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~~G~~---~~dL---~e~~~v~l~~p-~Gwv~   95 (129)
T cd08159          24 YDTY-WQSDGSQGSHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVYGGHS---PSDL---RELKDVNIRPS-NGWVA   95 (129)
T ss_pred             CCcc-CCCCCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEEecCC---HHHh---heeEEEEecCC-CceEE
Confidence            4556 899446667889999999999999999764  4557999999998643   4443   44567777555 67765


Q ss_pred             EeccccCcccccEEEEEEcCCCCCC-eeEEEEEEEE
Q 028742          131 YQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGLK  165 (204)
Q Consensus       131 ~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl~  165 (204)
                      +..  -......-|.|.|..|..+. -|+|.-|.++
T Consensus        96 i~~--~~~~~~~~iqI~I~~nhqnG~DthiRgikI~  129 (129)
T cd08159          96 LLE--DDTLKCPYIEIRIKRCRSDGIDTRIRGLRLL  129 (129)
T ss_pred             EEc--CCcEEEEEEEEEEHHhccCCccceeeEEEeC
Confidence            532  23455677899999997544 6888887763

This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f

>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination

Probab=96.05  E-value=0.22  Score=40.02  Aligned_cols=102  Identities=16%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             CCCcceecCCCCC-ceEEEeecCCceeEEEEEEEcC--CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceE
Q 028742           53 SSGEHLESNDGDP-ELLVYIPFTTDVKIKSISIVGG--ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVL  129 (204)
Q Consensus        53 ~~~~~l~S~D~De-QLii~IpF~~~Vkl~sI~I~~~--~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~  129 (204)
                      .+.| =|| |--. +=.|+|-|..-|.|+.|.|...  ++...|++|.+++=.    |.+   .+...++++.+...|++
T Consensus        29 ~~ty-WQS-dG~qgpH~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~~G~----~~d---L~ei~~V~i~~~~~g~V   99 (134)
T cd08666          29 PDTY-WES-DGSQGQHWIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVYGGE----GDN---LKKLNDVSIDETLIGDV   99 (134)
T ss_pred             CCcc-Eec-CCCCCCeEEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEEecC----ccC---hhheEEEEeCCCCCCeE
Confidence            4556 899 6555 6899999999999999999763  455799999999865    233   34455677755445666


Q ss_pred             EEeccccCcccccEEEEEEcCCCCCC-eeEEEEEEEE
Q 028742          130 EYQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGLK  165 (204)
Q Consensus       130 e~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl~  165 (204)
                      .+ |+..+ ....-|.|.|..|..+. -|+|..|.++
T Consensus       100 ~i-l~~~~-~~~~~iqI~I~~nhqnG~DthIRgiKI~  134 (134)
T cd08666         100 CI-LEDMT-THLPVIEIRIKECKDEGIDVRIRGIKIK  134 (134)
T ss_pred             EE-ecCCc-eEeEEEEEEeHHhccCCccceeeEEEeC
Confidence            55 33322 22235899999997544 7999888763

This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i

>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=95.61  E-value=0.057  Score=45.69  Aligned_cols=110  Identities=23%  Similarity=0.229  Sum_probs=74.4

Q ss_pred             CCCCcceecCCCCCceEEEeecCCceeEEEEEEEcC---CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccce
Q 028742           52 NSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG---ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGV  128 (204)
Q Consensus        52 d~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~---~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~  128 (204)
                      +.+.| =|| |--.-=.|.|-|..-|.|+.|.|-..   ++...|++|.|++=..   +.|+   ....+++|.+ ..|+
T Consensus        55 ~~~Ty-WQS-DG~qpH~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~---~~dl---~e~~~v~l~~-p~GW  125 (193)
T PF03256_consen   55 STETY-WQS-DGSQPHWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAGNS---PHDL---QEVKTVELEE-PNGW  125 (193)
T ss_dssp             -TT---EE---SSSSEEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEESS---TTT----EEEEEEEECC--EEE
T ss_pred             ChhHh-hcc-CCCCCEEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEeCC---cCce---EEEEEEEecC-CCcc
Confidence            35666 999 66656899999999999999999753   5668999999998543   2222   3345667755 3789


Q ss_pred             EEEeccc--cCcccccEEEEEEcCCCCC-CeeEEEEEEEEeEEcC
Q 028742          129 LEYQTRY--SKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEATQ  170 (204)
Q Consensus       129 ~e~~Lk~--~KFqnV~sLtif~~~N~g~-e~t~I~~Igl~G~~~~  170 (204)
                      +.++|+-  .++-.+.-|.|.|..|..+ --|+|..|.++|-...
T Consensus       126 v~i~l~~~~~~~~r~~~iqI~I~~nhq~G~DthiR~iki~gp~~~  170 (193)
T PF03256_consen  126 VHIPLLDNRGNPLRCFFIQIAILSNHQNGKDTHIRGIKIYGPRPS  170 (193)
T ss_dssp             EEEE-BSTTTSBEEEEEEEEEEEEECCC-SS-EESEEEEEEE---
T ss_pred             EEEEeCCCCCCcEEEEEEEEEEEecccCCCCCceeeEEEECCCCc
Confidence            9999874  3555667899999888744 4799999999996443

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.

>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination

Probab=95.14  E-value=0.58  Score=37.44  Aligned_cols=103  Identities=14%  Similarity=0.174  Sum_probs=71.8

Q ss_pred             CCCcceecCCCC-CceEEEeecCCceeEEEEEEEcC--CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceE
Q 028742           53 SSGEHLESNDGD-PELLVYIPFTTDVKIKSISIVGG--ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVL  129 (204)
Q Consensus        53 ~~~~~l~S~D~D-eQLii~IpF~~~Vkl~sI~I~~~--~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~  129 (204)
                      .+.| =|| |-- ..=.|+|-|..-|.|+.|.|...  ++...|++|.|.+=..   |.++.  +...++++.+. .|++
T Consensus        24 ~~ty-WQS-dG~q~pH~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V~~G~~---~~dL~--~e~~~V~~~~~-~g~v   95 (131)
T cd08665          24 PKTY-WES-NGSTGSHYINIHMHRGVVIRQLYMLVASEDSSYMPARVVVLGGDS---PSCIT--TELNAVNVSPT-ASRV   95 (131)
T ss_pred             CCce-Ecc-CCCCCCeEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEEEecCC---HHHhh--heeEEEEccCC-cceE
Confidence            4456 899 665 37799999999999999999764  3457999999998543   33332  23445566444 4655


Q ss_pred             EEecccc-CcccccEEEEEEcCCCCCC-eeEEEEEEEEe
Q 028742          130 EYQTRYS-KFQSVANITLHFPDNFGGD-TTQIHYIGLKG  166 (204)
Q Consensus       130 e~~Lk~~-KFqnV~sLtif~~~N~g~e-~t~I~~Igl~G  166 (204)
                      .+ |.-+ .|.  .-|.|.|..|+.+. -|+|.-|.++|
T Consensus        96 ~l-l~~~~~~~--~~iqI~I~~nhqnG~DthIRgikI~G  131 (131)
T cd08665          96 VL-LENMTRFW--PIIQIRIKRCQQGGIDTRVRGLEILG  131 (131)
T ss_pred             EE-cccCcccc--eEEEEEEhhhcccCccceeeEEEecC
Confidence            43 4332 222  46999999998544 79999999987

This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui

>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=94.30  E-value=0.9  Score=36.28  Aligned_cols=102  Identities=18%  Similarity=0.240  Sum_probs=70.1

Q ss_pred             CCCcceecCCCCC-ceEEEeecCCceeEEEEEEEcC--CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceE
Q 028742           53 SSGEHLESNDGDP-ELLVYIPFTTDVKIKSISIVGG--ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVL  129 (204)
Q Consensus        53 ~~~~~l~S~D~De-QLii~IpF~~~Vkl~sI~I~~~--~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~  129 (204)
                      .+.| =|| |--. +=.|+|-|..-|.|++|.|...  ++...|++|++++=..   |+|+   +...++++.+...|++
T Consensus        25 ~~ty-WQS-DG~q~pH~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~~G~~---~~dL---~e~~~v~v~~~~~g~v   96 (131)
T cd08365          25 TSTY-WQS-DGSQGSHWIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVAGGRS---ASNL---QELRDVNIPPSVTGYV   96 (131)
T ss_pred             CCce-Ecc-CCCCCCEEEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEEecCC---HHHh---eeEEEEEccCCCceeE
Confidence            4556 899 5433 5799999999999999999863  4457999999998643   4443   3355566654434555


Q ss_pred             EEeccccCcccccEEEEEEcCCCCCC-eeEEEEEEE
Q 028742          130 EYQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGL  164 (204)
Q Consensus       130 e~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl  164 (204)
                      .+ | .-.-....-|.|.|..|..+. -|+|.-|.+
T Consensus        97 ~l-l-~~~~~~~~~iqI~I~~nhqnG~DthiRgikI  130 (131)
T cd08365          97 TL-L-EDATISQPYIEIRIKRCRSDGIDTRIHGLRI  130 (131)
T ss_pred             EE-c-cCCceeeEEEEEEEHHHccCCccceeeEEEe
Confidence            43 2 112234567899999997544 688887765

This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te

>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=1  Score=37.89  Aligned_cols=108  Identities=23%  Similarity=0.298  Sum_probs=79.8

Q ss_pred             CCcceecCCCCCceEEEeecCCceeEEEEEEEcC---CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceEE
Q 028742           54 SGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG---ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLE  130 (204)
Q Consensus        54 ~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~---~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~e  130 (204)
                      +.| -+| |--.==.|+|-|..-|+|..+.|-..   ++..+|.+|||..=   -+|.|+..   .|..+|.+. +|++-
T Consensus        48 ety-WqS-dG~~PH~i~I~F~K~~~I~~v~if~~f~~DeSYtPs~i~I~~G---~g~~dl~~---~~~~el~ep-~GWv~  118 (184)
T KOG3437|consen   48 ETY-WQS-DGSQPHLINIQFHKRVDIQYVVIFLDFKQDESYTPSKIKIRAG---NGFNDLWE---IQSVELVEP-KGWVH  118 (184)
T ss_pred             hHh-eec-CCCCCeEEEEEEEeEEEEEEEEEEEEEecccccCceeEEEEec---CChhheee---eeEEEEecC-CceEE
Confidence            344 788 55444567899999999999999864   56789999998874   35655544   677888665 78887


Q ss_pred             Eeccc--cCcccccEEEEEEcCCCCC-CeeEEEEEEEEeEEcC
Q 028742          131 YQTRY--SKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEATQ  170 (204)
Q Consensus       131 ~~Lk~--~KFqnV~sLtif~~~N~g~-e~t~I~~Igl~G~~~~  170 (204)
                      +|+.-  .+--.|..|.|-|..|..+ --|-+..|.+++-+.+
T Consensus       119 lp~~d~~~~~lr~~~iqi~i~~NHq~GkDthvR~iri~~p~~e  161 (184)
T KOG3437|consen  119 LPVLDNDDKPLRCFMIQIAILSNHQNGKDTHVRHIRIYAPSIE  161 (184)
T ss_pred             EeeccCCCCceEEEEEEEEeecccccCccceeEEEEEeccccc
Confidence            77765  4555678888999999754 3577888888886543

>PF14652 DUF4457: Domain of unknown function (DUF4457)

Probab=93.00  E-value=1.9  Score=39.23  Aligned_cols=139  Identities=11%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             CCCCcceecCCCCCceEEEeecCCceeEEEEEEEcCC-----CCCCCceEEEeecCCCC-C--ccccccCC------cce
Q 028742           52 NSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGA-----DGTSPSKMRVFINREGI-D--FSDAQDMQ------AIQ  117 (204)
Q Consensus        52 d~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~~-----~~~~Pk~iKlf~N~p~l-d--Fd~~~~~~------p~Q  117 (204)
                      +...| +..-....+..|.|-|.++++|..|.|=--.     ....-|.|+||.|...+ +  --.+...+      -.|
T Consensus        69 ~~~MW-l~pf~~~~~~~i~i~f~~~~~is~iRIWNYNks~~ds~~GvK~v~I~ldg~~i~~~~~~~irkapG~~~~D~~q  147 (329)
T PF14652_consen   69 DEHMW-LAPFSPGKQHVITIRFPEPTSISGIRIWNYNKSREDSYRGVKDVKIYLDGKLIFPGEGFLIRKAPGNCHFDFGQ  147 (329)
T ss_pred             ccceE-EeecCCCCCEEEEEEeCCCceeeEEEEEcCCCCcchhhcCeEEEEEEECCEEeecccceEEeeccccCcccccc
Confidence            45566 5331256688999999999999999996431     23568999999996543 1  00122211      245


Q ss_pred             EEEeeccccce-----------------EEEeccccCcccccEEEEEEcCCCCCCeeEEEEEEEEeEEcC-ccccceEEe
Q 028742          118 EWDLVENLQGV-----------------LEYQTRYSKFQSVANITLHFPDNFGGDTTQIHYIGLKGEATQ-LKRDVVATI  179 (204)
Q Consensus       118 ~~~L~~~~~g~-----------------~e~~Lk~~KFqnV~sLtif~~~N~g~e~t~I~~Igl~G~~~~-~~r~~v~t~  179 (204)
                      ++.|.......                 ..-.....-+.....|+|.+-+|||+.    +||||-|---- ..-+++...
T Consensus       148 ~I~f~~~~k~~~~sks~~~~~~~~s~~~~~~~~~~~~~p~g~~l~~~ilStWGd~----~yvGLngiElfD~~g~~i~~~  223 (329)
T PF14652_consen  148 TILFTDQDKISENSKSPSLISNVNSEEQASQDYEIPELPCGFVLQIEILSTWGDP----HYVGLNGIELFDENGERIKIS  223 (329)
T ss_pred             EEEeecccccccccccccccccccccccccccccccccccceEEEEEEeeccCCc----ceecccceEEEcCCCCEEeec
Confidence            55553321100                 000111223456789999999999985    44444442111 111233211


Q ss_pred             eeecCCCCCCCccccc
Q 028742          180 VYELRPNPSDHKTKSE  195 (204)
Q Consensus       180 vYE~~~np~Dhk~~~~  195 (204)
                      -+...+.|.|-.+.++
T Consensus       224 ~~~i~a~p~~v~~l~~  239 (329)
T PF14652_consen  224 PNNITAFPPSVNVLPG  239 (329)
T ss_pred             hhheeccCcccccCcc
Confidence            2344566666665533

>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2)

Probab=91.98  E-value=3.5  Score=33.77  Aligned_cols=102  Identities=13%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CCCcceecCCCCCceEEEeecCCceeEEEEEEEcC--CCCCCCceEEEeecCCCCCccccccCCcceEEEeeccccceEE
Q 028742           53 SSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG--ADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLE  130 (204)
Q Consensus        53 ~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~~--~~~~~Pk~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~e  130 (204)
                      .+.| =||+..-++=.|+|-|..-|-|++|.|...  ++...|++|.|++=.   +|+++   +...++++++. .+.+.
T Consensus        47 ~~TY-WQSdG~q~~HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V~~G~---~~~~L---~el~~V~i~~~-~~~v~  118 (152)
T cd08664          47 SGSY-WQSSGSQGKHWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVVSGGD---SLNSL---KELKTINVNAT-DTLVT  118 (152)
T ss_pred             CCCe-eccCCCCCceEEEEEECCCcEEEEEEEEecCCCCCcCCceEEEEecC---Chhhh---heeEEEEcCCC-CceEE
Confidence            3455 899333336899999999999999999865  345799999998754   35443   44455566444 23333


Q ss_pred             EeccccCcccccEEEEEEcCCCCCC-eeEEEEEEE
Q 028742          131 YQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGL  164 (204)
Q Consensus       131 ~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl  164 (204)
                      +......|.  .-|.|.|..|..+. -|+|.-|.+
T Consensus       119 Ll~~~~~~~--~~IqI~I~~ch~~GiDt~IrglkI  151 (152)
T cd08664         119 LLQDVKEYY--RYIEIAIKQCRNNGIDCKIHGLNI  151 (152)
T ss_pred             eccCCCeee--EEEEEEhHhhhhCCCcceeeEEEe
Confidence            322333442  57899999998554 788887765

This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo

>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]

Probab=91.80  E-value=1.4  Score=36.63  Aligned_cols=135  Identities=16%  Similarity=0.202  Sum_probs=85.4

Q ss_pred             ccccccccc---ceEEcCCCCCcccccccccccccCCCCcceecCCCCCceEEEeecCCceeEEEEEEEc---CCCCCCC
Q 028742           20 LYKHIDLSK---VSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVG---GADGTSP   93 (204)
Q Consensus        20 L~~~ID~~~---v~cLNe~~~~~~~~v~k~~~~r~d~~~~~l~S~D~DeQLii~IpF~~~Vkl~sI~I~~---~~~~~~P   93 (204)
                      -..+||...   .+|--....++++.++..     +-+.| -+| |.-.---|+|-|..-+-|+++.+--   .++..+|
T Consensus        20 sa~~inv~~La~w~~SSfK~g~p~r~~ldd-----n~dty-Wqs-Dg~qPH~i~I~F~kr~~I~~v~lfls~t~DeSYtP   92 (189)
T COG5156          20 SARMINVTHLAEWRLSSFKRGHPLRELLDD-----NMDTY-WQS-DGVQPHSIQISFDKRRYIQSVQLFLSFTQDESYTP   92 (189)
T ss_pred             ccceecchhheeeeecccccCCcHHHHhhc-----chhhh-hcc-CCCCCceEEEEEeEEEeeeeehhhhhhhcccccCc
Confidence            334555443   345445556666666532     22445 889 6555567899998888888887753   4677899


Q ss_pred             ceEEEeecCCCCCccccccCCcceEEEeeccccceEEEeccccCcc-----cccEEEEEEcCCCCC-CeeEEEEEEEEeE
Q 028742           94 SKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQ-----SVANITLHFPDNFGG-DTTQIHYIGLKGE  167 (204)
Q Consensus        94 k~iKlf~N~p~ldFd~~~~~~p~Q~~~L~~~~~g~~e~~Lk~~KFq-----nV~sLtif~~~N~g~-e~t~I~~Igl~G~  167 (204)
                      .+|++++-   ++|+|++..+   ++++.+. .|++  .|++..|-     .|.-|.|.|..|..+ .-+.+.-|.++--
T Consensus        93 s~i~v~aG---~~~~D~r~~~---~vev~ep-~Gwv--~l~v~d~~~d~LL~c~~I~v~i~~NHq~GKDsHvR~ikiy~p  163 (189)
T COG5156          93 SKIGVRAG---LTREDVREIS---SVEVVEP-EGWV--TLSVADKREDDLLKCIYILVVINSNHQEGKDSHVRHIKIYEP  163 (189)
T ss_pred             ceeEEecc---CChhhheeEE---EEEEEcC-CceE--EEEecccCcCCceeEEEEEEEEecCcccCcccceeeEEEecc
Confidence            99999984   5677777654   3444333 5664  57777663     356677778888743 3466666766654


Q ss_pred             EcC
Q 028742          168 ATQ  170 (204)
Q Consensus       168 ~~~  170 (204)
                      ..+
T Consensus       164 s~e  166 (189)
T COG5156         164 STE  166 (189)
T ss_pred             CCc
Confidence            443

>KOG2687 consensus Spindle pole body protein, contains UNC-84 domain [Cell cycle control, cell division, chromosome partitioning]

Probab=91.54  E-value=2.6  Score=39.64  Aligned_cols=90  Identities=17%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             CCceEEEeecCCceeEEEEEEEcC------CC--CCCCceEEEeecCC----------CCCccccccCCcceEEEeeccc
Q 028742           64 DPELLVYIPFTTDVKIKSISIVGG------AD--GTSPSKMRVFINRE----------GIDFSDAQDMQAIQEWDLVENL  125 (204)
Q Consensus        64 DeQLii~IpF~~~Vkl~sI~I~~~------~~--~~~Pk~iKlf~N~p----------~ldFd~~~~~~p~Q~~~L~~~~  125 (204)
                      ++|=-+.|-+-..|-+.+|.+.-.      +.  .+|||...||.=.+          ...||  .+.++.|+|.+..+.
T Consensus       301 Gsrg~v~V~La~~Iip~avTleHv~~sVspd~~~sSAPKdf~V~g~~~~~~~~~~LLG~ftYD--~d~~~~QtF~~q~~~  378 (414)
T KOG2687|consen  301 GSRGYVTVRLARFIIPSAVTLEHVPKSVSPDGNISSAPKDFDVFGSTQDCTEEEVLLGEFTYD--LDGSPIQTFSLQHDT  378 (414)
T ss_pred             CCceEEEEEecceEEeeeeeeecccceecCCCCcCcCCcceEEEeecccCCcCceeeEEEEEC--CCCCcceEEeccCCC
Confidence            445566777889999999988643      22  47999999997654          11333  233567777774431


Q ss_pred             cceEEEeccccCcccccEEEEEEcCCCCCC-eeEEEEEEEEeE
Q 028742          126 QGVLEYQTRYSKFQSVANITLHFPDNFGGD-TTQIHYIGLKGE  167 (204)
Q Consensus       126 ~g~~e~~Lk~~KFqnV~sLtif~~~N~g~e-~t~I~~Igl~G~  167 (204)
                                  +.-++++-|-|.+|||.. .|-||++.+.|+
T Consensus       379 ------------~~~~~~V~l~~~SN~G~p~fTCiYR~RVhG~  409 (414)
T KOG2687|consen  379 ------------SAPFKTVELRFNSNHGHPKFTCIYRFRVHGR  409 (414)
T ss_pred             ------------ccccceEEEEEecCCCCCCceEEEEEEEcCc
Confidence                        223445667799999997 899999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
1xoy_A	161	Solution Structure Of At3g04780.1, An Arabidopsis O		8e-11
1wwy_A	171	Solution Structure Of The Duf1000 Domain Of A Thior		5e-09

>pdb|1XOY|A Chain A, Solution Structure Of At3g04780.1, An Arabidopsis Ortholog Of The C-Terminal Domain Of Human Thioredoxin-Like Protein Length = 161

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 21/156 (13%)
Query: 20  LYKHIDLSKVSALNEA----VPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTT 75
           L   ID S V  LN++    +P ++K  ++  E      G +LES D D +LL+YIPF  
Sbjct: 16  LLDFIDWSGVECLNQSSSHSLPNALKQGYREDE------GLNLES-DADEQLLIYIPFNQ 68
Query: 76  DVKIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLV-ENLQG---VLEY 131
            +K+ S +I  G +   P  ++ F N+E + FS+  D       +L  ENL+G   VL  
Sbjct: 69  VIKLHSFAI-KGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVL-- 125
Query: 132 QTRYSKFQSVANITLHFPDN-FGGDTTQIHYIGLKG 166
             +Y KFQ+V ++T+    N  G + T++  I L G
Sbjct: 126 --KYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYG 159

>pdb|1WWY|A Chain A, Solution Structure Of The Duf1000 Domain Of A Thioredoxin-Li 1 Length = 171

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 26/161 (16%)
Query: 45  KAWEQRLNSSGEH------------LESNDGDPELLVYIPFTTDVKIKSISIVGGADGTS 92
           KA  + LN S EH            LES D D +LL+ + F   VK+ S+   G  +G  
Sbjct: 18  KAGCECLNESDEHGFDNCLRKDTTFLES-DCDEQLLITVAFNQPVKLYSMKFQGPDNGQG 76
Query: 93  PSKMRVFIN-REGIDFSDAQDMQAIQEWDLVEN---LQGVLEYQTRYSKFQSVANITLHF 148
           P  +++FIN    +DF +A+  +  Q  +L E+     G++    RY KFQ+V ++T+  
Sbjct: 77  PKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPL--RYVKFQNVNSVTIFV 134
Query: 149 PDNFG-GDTTQIHYIGLKGEATQLKRDVVATIVYELRPNPS 188
             N G  +TT+I Y    G   Q      AT + + +  PS
Sbjct: 135 QSNQGEEETTRISYFTFIGTPVQ------ATNMNDFKSGPS 169

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	2e-53
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	2e-51

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26 Length = 161

 Score =  167 bits (424), Expect = 2e-53
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 18  WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             L   ID S V  LN++   S+ +  K   +     G +LES D D +LL+YIPF   +
Sbjct: 14  VDLLDFIDWSGVECLNQSSSHSLPNALKQGYR--EDEGLNLES-DADEQLLIYIPFNQVI 70

Query: 78  KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
           K+ S +I  G +   P  ++ F N+E + FS+  D       +L E          +Y K
Sbjct: 71  KLHSFAI-KGPEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVK 129

Query: 138 FQSVANITLHFPDN-FGGDTTQIHYIGLKGE 167
           FQ+V ++T+    N  G + T++  I L G 
Sbjct: 130 FQNVRSLTIFIEANQSGSEVTKVQKIALYGS 160

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens} Length = 171

 Score =  162 bits (411), Expect = 2e-51
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 17/181 (9%)

Query: 11  DHDCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVY 70
                    L   I+ +    LNE+      +  +            LES D D +LL+ 
Sbjct: 3   SGSSGGYMDLMPFINKAGCECLNESDEHGFDNCLR-------KDTTFLES-DCDEQLLIT 54

Query: 71  IPFTTDVKIKSISIVGGADGTSPSKMRVFINR-EGIDFSDAQDMQAIQEWDLVE-NLQGV 128
           + F   VK+ S+   G  +G  P  +++FIN    +DF +A+  +  Q  +L E +++  
Sbjct: 55  VAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKED 114

Query: 129 LEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEATQLKRDVVATIVYELRPNP 187
                RY KFQ+V ++T+    N G  +TT+I Y    G   Q      AT + + +  P
Sbjct: 115 GIVPLRYVKFQNVNSVTIFVQSNQGEEETTRISYFTFIGTPVQ------ATNMNDFKSGP 168

Query: 188 S 188
           S
Sbjct: 169 S 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1xoya_	161	b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O1	2e-54

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 161

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  168 bits (428), Expect = 2e-54
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 18  WSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDV 77
             L   ID S V  LN++   S+ +  K   +     G +LES D D +LL+YIPF   +
Sbjct: 14  VDLLDFIDWSGVECLNQSSSHSLPNALKQGYRE--DEGLNLES-DADEQLLIYIPFNQVI 70

Query: 78  KIKSISIVGGADGTSPSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSK 137
           K+ S +I G  +   P  ++ F N+E + FS+  D       +L E          +Y K
Sbjct: 71  KLHSFAIKG-PEEEGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVK 129

Query: 138 FQSVANITLHFPDN-FGGDTTQIHYIGLKGE 167
           FQ+V ++T+    N  G + T++  I L G 
Sbjct: 130 FQNVRSLTIFIEANQSGSEVTKVQKIALYGS 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1xoya_	161	Hypothetical protein AT3g04780/F7O18_27 {Thale cre	100.0
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	95.41
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	91.87

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=333.06  Aligned_cols=152  Identities=30%  Similarity=0.447  Sum_probs=140.0

Q ss_pred             CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCC
Q ss_conf             88775543222114652697377777622220012000289996200499997438992047821377999971999999
Q 028742           13 DCSSDWSLYKHIDLSKVSALNEAVPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGGADGTS   92 (204)
Q Consensus        13 ~~~~~~~L~~~ID~~~v~cLN~~~~~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~~~~~~   92 (204)
                      -..++.+|+++||+++++|||++..++++++||+|+ |.+...+ ++| |+|+||||+|||+++||||||+|+++ ++++
T Consensus         9 vp~g~~dL~~~ID~~~v~cLNe~~~~~~~~vlk~~~-r~~~~~~-l~S-D~D~QLii~IpF~~~Vkl~si~i~~~-~~~~   84 (161)
T d1xoya_           9 IPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGY-REDEGLN-LES-DADEQLLIYIPFNQVIKLHSFAIKGP-EEEG   84 (161)
T ss_dssp             CCSSCEESSTTBCCSSCEESCSCTTSCSHHHHSTTS-CCTTTCC-EEC-SSCSSEEEEEEEEEEECEEEEEEECC-TTTS
T ss_pred             CCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC-CCCCCCE-EEC-CCCHHEEEEEECCCCEEEEEEEEECC-CCCC
T ss_conf             677334468638606665966889987200224133-5678860-744-99731499965478468889998589-9999


Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCC-CEEEEEEEEEEEEE
Q ss_conf             91699843599888433336785438993066652279960256746655899998089999-83499999999477
Q 028742           93 PSKMRVFINREGIDFSDAQDMQAIQEWDLVENLQGVLEYQTRYSKFQSVANITLHFPDNFGG-DTTQIHYIGLKGEA  168 (204)
Q Consensus        93 Pk~iKlf~N~~~ldF~~~~~~~p~q~l~l~~~~~g~~e~~Lk~~KFqnV~sLtifi~~n~g~-~~t~I~yIgl~G~~  168 (204)
                      ||+||||+|+|+|||+++++.+|+|+|+|.++..+..+|+||++|||||++|||||++|+++ |.|+|+||||+|+.
T Consensus        85 Pk~iklf~N~~~idF~~a~~~~p~q~iel~~~~~~~~~~~L~~~kFqnV~sLtif~~~N~~g~e~T~I~~I~l~Ges  161 (161)
T d1xoya_          85 PKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYVKFQNVRSLTIFIEANQSGSEVTKVQKIALYGST  161 (161)
T ss_dssp             EEEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCCEECCTTTCSCEEEEEEEEEEETTCCSCCEESEEEEEECC
T ss_pred             CCEEEEEECCCCCCCCHHHHCCCCCEEEECCCCCCCEEEEECCEEECCCCEEEEEEECCCCCCCEEEEEEEEEEECC
T ss_conf             86889876798688532320786505896774578528861111254613799999478899723899999999359

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.043  Score=28.56  Aligned_cols=116  Identities=22%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEEC---CCCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf             7622220012000289996200499997438992047821377999971---9999999169984359988843333678
Q 028742           38 GSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVG---GADGTSPSKMRVFINREGIDFSDAQDMQ  114 (204)
Q Consensus        38 ~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~---~~~~~~Pk~iKlf~N~~~ldF~~~~~~~  114 (204)
                      +.+.+++..     +...+ =+| +....--|.|-|..++.|.+|.|..   ......|+.++||.-...-+|..     
T Consensus        39 ~~~~~l~Dg-----d~~T~-W~S-~~~~ph~I~idl~~~~~i~~i~i~~~~~~d~s~~p~~~~i~~s~d~~~w~~-----  106 (161)
T d1jhja_          39 FGVDQLRDD-----NLETY-WQS-DGSQPHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQE-----  106 (161)
T ss_dssp             BSTHHHHSS-----CTTCC-EEC-CSSSSEEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTSCEE-----
T ss_pred             CCHHHCCCC-----CCCCE-EEC-CCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCCEE-----
T ss_conf             888883479-----97723-422-898987999995898499999999557787679968999997577688221-----


Q ss_pred             CCEEEEEECCCCCEEEEECCCCCCCCCC--EEEEEECCCC-CCCEEEEEEEEEEEE
Q ss_conf             5438993066652279960256746655--8999980899-998349999999947
Q 028742          115 AIQEWDLVENLQGVLEYQTRYSKFQSVA--NITLHFPDNF-GGDTTQIHYIGLKGE  167 (204)
Q Consensus       115 p~q~l~l~~~~~g~~e~~Lk~~KFqnV~--sLtifi~~n~-g~~~t~I~yIgl~G~  167 (204)
                       ..+.++.. ..+....++....|+.+.  -|-|.|.+|+ +|.-++|..|.++|.
T Consensus       107 -v~~~~~~~-~~g~~~~~~~~~~~~~~~~ryiri~i~~n~~~G~D~~Ir~i~V~Gp  160 (161)
T d1jhja_         107 -IRQLELVE-PSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTP  160 (161)
T ss_dssp             -EEEEECSS-CEEEEEEECBCTTSSBEEEEEEEEEEEEEGGGCSSCEECEEEEEEE
T ss_pred             -EEEEEECC-CCCCEEEEEECCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEEEC
T ss_conf             -78999417-8772688733267883799999999952236893648988999967

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.31  Score=23.75  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=72.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCEEEEEEEEECC---CCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             7776222200120002899962004999974389920478213779999719---9999991699843599888433336
Q 028742           36 VPGSVKSVFKAWEQRLNSSGEHLESNDGDPELLVYIPFTTDVKIKSISIVGG---ADGTSPSKMRVFINREGIDFSDAQD  112 (204)
Q Consensus        36 ~~~~~~~i~k~~~~r~d~~~~~l~S~D~D~QLiI~IpF~~~Vkl~sI~I~~~---~~~~~Pk~iKlf~N~~~ldF~~~~~  112 (204)
                      ....+.+++..     +...+ =+|+..++ =-|.|-|...+.|..|.|.-.   ....+|+++++++-...-++..+  
T Consensus        68 ~g~~~~~~~Dg-----n~~T~-W~S~~~~p-h~i~idl~~~~~i~~i~i~~~~~~d~sy~p~~~~i~~s~d~~~w~~v--  138 (194)
T d1gqpa_          68 LGNPVDFALDD-----NYDTF-WQSDGGQP-HQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFY--  138 (194)
T ss_dssp             TTCCGGGGSSS-----CTTCC-EECCSSSS-EEEEEEEEEEEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTTCEEE--
T ss_pred             CCCCHHHHCCC-----CCCCE-ECCCCCCC-EEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEE--
T ss_conf             99888995379-----97630-01689999-79999899982899999994664434689669999995896873588--


Q ss_pred             CCCCEEEEEECCCCCEEEEECCCC----CCCCCCEEEEEECCCC-CCCEEEEEEEEEEEE
Q ss_conf             785438993066652279960256----7466558999980899-998349999999947
Q 028742          113 MQAIQEWDLVENLQGVLEYQTRYS----KFQSVANITLHFPDNF-GGDTTQIHYIGLKGE  167 (204)
Q Consensus       113 ~~p~q~l~l~~~~~g~~e~~Lk~~----KFqnV~sLtifi~~n~-g~~~t~I~yIgl~G~  167 (204)
                          .+.++.. ..|++.+++.-.    +.-.+.-|-|.|..|+ +|--|+|.-|.++|-
T Consensus       139 ----~t~~~~~-~~Gwv~i~l~~~~~~~~pv~aryIri~i~~nhqnGkDt~IR~irv~Gp  193 (194)
T d1gqpa_         139 ----KMLEVRN-VNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVP  193 (194)
T ss_dssp             ----EEEEEEE-CEEEEEECCC--------EEEEEEEEEEEEESTTCSSCEESCEEEEEE
T ss_pred             ----EEEEECC-CCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEEECC
T ss_conf             ----9998427-885599886567666870799999999972245895447873699678