Citrus Sinensis ID: 028749

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
MNSPAPCSRSWSISEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQACPTNKDT
cccccccccccEEEEccccEEEEEEEEEEcccccEEEEEEEEEEEcccHHHHHHHHHccccHHHHHHHccEEEEEEEcccccEEEEEEEcccccccccccEEEEEEEEEEEcccEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccccccccccEEEcccccEEEEEEEccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEEcccccccccccccEEEEEEEEEccccEEEEEEEcccHHHHcccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
mnspapcsrswsiseDSLRRYVHFAKIskrrsgslhtfrsrwllksvspqqFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRfgehskplfrnrefIVYERRETMEDGTLVVAVASLPkeiaaglhpkqnnsirGLLLQsgwvvekleddscMVTYVVQldpagwvpkcfvnrLNTKLVMIIENLRKLAQACPTNKDT
mnspapcsrswsisedSLRRYVHFakiskrrsgslhtfrsrwllksvsPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIrlrfgehskplfrnREFIVYERRETMEDGTLVVAVASLPKEIAaglhpkqnnsIRGLLLQSGWVVEKLEDDSCMVTYVVQldpagwvpKCFVNRLNTKLVMIIENLrklaqacptnkdt
MNSPAPCSRSWSISEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQACPTNKDT
*****************LRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQ********
****APC**SWSISEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIA***HPK*NNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKL***C******
*************SEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQ********
******CSRSWSISEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQACPT****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSPAPCSRSWSISEDSLRRYVHFAKISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQACPTNKDT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query204 2.2.26 [Sep-21-2011]
Q9JMD3291 PCTP-like protein OS=Mus yes no 0.745 0.522 0.248 8e-09
Q9Y365291 PCTP-like protein OS=Homo yes no 0.745 0.522 0.248 9e-09
>sp|Q9JMD3|PCTL_MOUSE PCTP-like protein OS=Mus musculus GN=Stard10 PE=1 SV=1 Back     alignment and function desciption
 Score = 60.5 bits (145), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 84/169 (49%), Gaps = 17/169 (10%)

Query: 34  SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRLRFGEHS 93
           +LH  + R     V  +    V + I+  K+WDS+++E   I  L  N  +     G +S
Sbjct: 64  TLHKIKCRMECCDVPAETLYDVLHDIEYRKKWDSNVIETFDIARLTVNADV-----GYYS 118

Query: 94  ----KPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWV 149
               KPL +NR+ I       M    +++  +     +    +P + + +R + +Q+G++
Sbjct: 119 WRCPKPL-KNRDVITLRSWLPMGADYIIMNYS-----VKHPKYPPRKDLVRAVSIQTGYL 172

Query: 150 VEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQAC 198
           ++     SC++TY+ Q+DP G +PK  VN+  +   +  + ++K+ +AC
Sbjct: 173 IQSTGPKSCVITYLAQVDPKGSLPKWVVNK--SSQFLAPKAMKKMYKAC 219
May play specific roles in sperm maturation or fertilization.
Mus musculus (taxid: 10090)
>sp|Q9Y365|PCTL_HUMAN PCTP-like protein OS=Homo sapiens GN=STARD10 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
297739431237 unnamed protein product [Vitis vinifera] 0.995 0.856 0.792 1e-103
225465314241 PREDICTED: uncharacterized protein LOC10 0.995 0.842 0.792 1e-103
224129538241 predicted protein [Populus trichocarpa] 0.995 0.842 0.783 1e-102
255556689238 conserved hypothetical protein [Ricinus 0.995 0.852 0.789 1e-101
356564626248 PREDICTED: PCTP-like protein-like [Glyci 0.990 0.814 0.782 1e-100
356520137248 PREDICTED: PCTP-like protein-like [Glyci 0.990 0.814 0.773 1e-100
255646729248 unknown [Glycine max] 0.990 0.814 0.777 1e-100
147765771 378 hypothetical protein VITISV_004152 [Viti 0.936 0.505 0.790 2e-95
30695754242 lipid-binding START domain-containing pr 0.965 0.814 0.675 2e-84
28393461242 unknown protein [Arabidopsis thaliana] 0.965 0.814 0.675 2e-84
>gi|297739431|emb|CBI29613.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 197/236 (83%), Gaps = 33/236 (13%)

Query: 1   MNSPAPCSRSWSISEDSLRRYVHFA---------------------------------KI 27
           M+SPAPC+RSWSISEDSLRRYV+FA                                 +I
Sbjct: 1   MSSPAPCTRSWSISEDSLRRYVYFASESCIQELLSASDTTRVGNSSDGWKVLTLDNGVEI 60

Query: 28  SKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRL 87
           SKRRSGSLHTFRSRWLL+SVSP+QFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRL
Sbjct: 61  SKRRSGSLHTFRSRWLLRSVSPEQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRL 120

Query: 88  RFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSG 147
           RFGE SKPLFRNREFIVYERRETM+DGTLVVAVASLPKEIAAGLHPKQNN+IR LLLQSG
Sbjct: 121 RFGESSKPLFRNREFIVYERRETMDDGTLVVAVASLPKEIAAGLHPKQNNAIRALLLQSG 180

Query: 148 WVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQACPTNKD 203
           WVVEKLEDDSCMVTYV+QLDPAGW+PKCFVNRLNTKLVMIIENLRK  QACP N D
Sbjct: 181 WVVEKLEDDSCMVTYVIQLDPAGWLPKCFVNRLNTKLVMIIENLRKQVQACPINGD 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465314|ref|XP_002272474.1| PREDICTED: uncharacterized protein LOC100265982 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224129538|ref|XP_002328741.1| predicted protein [Populus trichocarpa] gi|222839039|gb|EEE77390.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556689|ref|XP_002519378.1| conserved hypothetical protein [Ricinus communis] gi|223541445|gb|EEF42995.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356564626|ref|XP_003550552.1| PREDICTED: PCTP-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356520137|ref|XP_003528721.1| PREDICTED: PCTP-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|255646729|gb|ACU23838.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|147765771|emb|CAN68982.1| hypothetical protein VITISV_004152 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30695754|ref|NP_199791.2| lipid-binding START domain-containing protein [Arabidopsis thaliana] gi|57222140|gb|AAW38977.1| At5g49800 [Arabidopsis thaliana] gi|332008474|gb|AED95857.1| lipid-binding START domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|28393461|gb|AAO42152.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
TAIR|locus:2155461242 AT5G49800 "AT5G49800" [Arabido 0.843 0.710 0.794 6.5e-81
ZFIN|ZDB-GENE-040426-1797274 zgc:77147 "zgc:77147" [Danio r 0.867 0.645 0.218 1.8e-11
UNIPROTKB|Q9Y365291 STARD10 "PCTP-like protein" [H 0.759 0.532 0.259 1.2e-09
MGI|MGI:1860093291 Stard10 "START domain containi 0.759 0.532 0.259 1.2e-09
TAIR|locus:2155461 AT5G49800 "AT5G49800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 725 (260.3 bits), Expect = 6.5e-81, Sum P(2) = 6.5e-81
 Identities = 139/175 (79%), Positives = 161/175 (92%)

Query:    26 KISKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSII 85
             +ISKR SGSLH FRSR +L SVSP+QFITVANAIDAAKQW+ DLVEA +I+D+++NLS+I
Sbjct:    60 EISKRDSGSLHAFRSRRILTSVSPEQFITVANAIDAAKQWEGDLVEATHIRDIDENLSVI 119

Query:    86 RLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHP---KQNNSIRGL 142
             RLRFGE+SKPLFRNREFI+YERRETM+DGTLVVAVASLPKE+A GL P   K+NN IRG 
Sbjct:   120 RLRFGENSKPLFRNREFIIYERRETMQDGTLVVAVASLPKEMAEGLEPTEKKKNNYIRGF 179

Query:   143 LLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQA 197
             L++SGWV+EKLED SCM+TYVVQLDPAGW+PKCFVNRLNTKLVMII+NLRK+AQA
Sbjct:   180 LVESGWVLEKLEDTSCMITYVVQLDPAGWLPKCFVNRLNTKLVMIIDNLRKVAQA 234
GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ZFIN|ZDB-GENE-040426-1797 zgc:77147 "zgc:77147" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y365 STARD10 "PCTP-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1860093 Stard10 "START domain containing 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
cd00177193 cd00177, START, Lipid-binding START domain of mamm 1e-35
cd08871222 cd08871, START_STARD10-like, Lipid-binding START d 1e-14
cd08876195 cd08876, START_1, Uncharacterized subgroup of the 7e-12
smart00234205 smart00234, START, in StAR and phosphatidylcholine 4e-09
cd08868208 cd08868, START_STARD1_3_like, Cholesterol-binding 1e-08
pfam01852205 pfam01852, START, START domain 1e-07
cd08867206 cd08867, START_STARD4_5_6-like, Lipid-binding STAR 8e-04
cd08914236 cd08914, START_STARD15-like, Lipid-binding START d 0.003
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information 
 Score =  123 bits (311), Expect = 1e-35
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 26  KISKRRSG--SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLS 83
           KI  +      L   ++  ++   SP+Q   +   ID  K+WD +  E + I++++++  
Sbjct: 27  KIYTKPYEDSGLKLLKAEGVIP-ASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTD 85

Query: 84  IIRLRFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLL 143
           II  +           R+F+   RR  ++DGT V+   S+  +     HPK+   +R  +
Sbjct: 86  IIYYKT--KPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEI 139

Query: 144 LQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRKLAQA 197
             SGW++E L+     VTYV+Q+DP G +PK  VN    K +       + A+ 
Sbjct: 140 KLSGWIIEPLDPGKTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLRKAKK 193

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular processes including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease. The Arabidopsis homeobox protein GLABRA 2 suppresses root hair formation in hairless epidermal root cells. Length = 193
>gnl|CDD|176880 cd08871, START_STARD10-like, Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>gnl|CDD|176885 cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176877 cd08868, START_STARD1_3_like, Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information
>gnl|CDD|176876 cd08867, START_STARD4_5_6-like, Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>gnl|CDD|176922 cd08914, START_STARD15-like, Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 204
cd08871222 START_STARD10-like Lipid-binding START domain of m 100.0
cd08911207 START_STARD7-like Lipid-binding START domain of ma 100.0
cd08874205 START_STARD9-like C-terminal START domain of mamma 100.0
cd08904204 START_STARD6-like Lipid-binding START domain of ma 100.0
cd08910207 START_STARD2-like Lipid-binding START domain of ma 100.0
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 100.0
cd08906209 START_STARD3-like Cholesterol-binding START domain 100.0
cd08870209 START_STARD2_7-like Lipid-binding START domain of 100.0
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 100.0
cd08905209 START_STARD1-like Cholesterol-binding START domain 100.0
cd08872235 START_STARD11-like Ceramide-binding START domain o 100.0
cd08903208 START_STARD5-like Lipid-binding START domain of ma 100.0
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 100.0
smart00234206 START in StAR and phosphatidylcholine transfer pro 100.0
cd08902202 START_STARD4-like Lipid-binding START domain of ma 100.0
cd08914236 START_STARD15-like Lipid-binding START domain of m 100.0
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 100.0
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 100.0
cd00177193 START Lipid-binding START domain of mammalian STAR 100.0
KOG2761219 consensus START domain-containing proteins involve 100.0
cd08913240 START_STARD14-like Lipid-binding START domain of m 100.0
PF01852206 START: START domain; InterPro: IPR002913 START (St 100.0
cd08873235 START_STARD14_15-like Lipid-binding START domain o 100.0
cd08907205 START_STARD8-like C-terminal lipid-binding START d 100.0
cd08909205 START_STARD13-like C-terminal lipid-binding START 100.0
cd08908204 START_STARD12-like C-terminal lipid-binding START 100.0
PLN00188 719 enhanced disease resistance protein (EDR2); Provis 99.97
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 99.75
KOG1739611 consensus Serine/threonine protein kinase GPBP [Si 99.74
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 99.7
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.61
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 99.43
PF11274184 DUF3074: Protein of unknown function (DUF3074) 99.27
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 99.27
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 99.21
PRK10724158 hypothetical protein; Provisional 99.21
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 99.01
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 98.98
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 98.93
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 98.88
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 98.85
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 98.75
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 98.57
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 98.55
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 98.34
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 98.29
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 98.19
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 98.01
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 97.99
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 97.96
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 97.34
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 97.3
PF06240140 COXG: Carbon monoxide dehydrogenase subunit G (Cox 97.22
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 97.19
COG5637217 Predicted integral membrane protein [Function unkn 97.03
COG3427146 Carbon monoxide dehydrogenase subunit G, CoxG [Ene 96.99
TIGR01599208 PYST-A Plasmodium yoelii subtelomeric family PYST- 96.85
KOG2200674 consensus Tumour suppressor protein p122-RhoGAP/DL 96.65
KOG3177227 consensus Oligoketide cyclase/lipid transport prot 96.64
cd07816148 Bet_v1-like Ligand-binding bet_v_1 domain of major 95.6
cd08893136 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi 95.35
cd08899157 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan 95.16
cd08898145 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan 95.1
cd08896146 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan 94.43
cd08901136 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan 94.39
PF08327124 AHSA1: Activator of Hsp90 ATPase homolog 1-like pr 94.34
cd08895146 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan 92.93
cd08894139 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan 92.76
cd07826142 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan 90.24
KOG3845241 consensus MLN, STAR and related lipid-binding prot 89.61
cd08900143 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan 89.0
cd08897133 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan 88.57
COG3832149 Uncharacterized conserved protein [Function unknow 85.33
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information 
Probab=100.00  E-value=1.2e-40  Score=263.51  Aligned_cols=181  Identities=23%  Similarity=0.424  Sum_probs=165.9

Q ss_pred             CCCCCcEE--cCCCeEEEEEEeeeecccCCc-eeEEEEEEEEecCCHHHHHHHHhcccccccchhhccceeeeeeecCCe
Q 028749            6 PCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL   82 (204)
Q Consensus         6 ~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~wd~~~~~~~~l~~~~~~~   82 (204)
                      ...++|++  +++||++|+++.      +++ +..+|+++++++++++.+++++.|.+.|++||+++.++++|++++++.
T Consensus        20 ~~~~~W~~~~~~~gi~iy~r~~------~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~   93 (222)
T cd08871          20 DSTDGWKLKYNKNNVKVWTKNP------ENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNN   93 (222)
T ss_pred             cCCCCcEEEEcCCCeEEEEeeC------CCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCC
Confidence            45679999  999999999988      554 899999999878999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCc-ccCCeeEEEEEEEEeCCCeEEEEEeccCcccccCCCCCCCCcEEEEEEceEEEEEEcCCCceEEE
Q 028749           83 SIIRLRFGEHSKPL-FRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDDSCMVT  161 (204)
Q Consensus        83 ~i~y~~~~~~~~p~-v~~RDfv~~~~~~~~~~g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~~~~v~  161 (204)
                      .|.|+.++   +|| +++||||+++++...+ +.++++.+|+    +|+.+|+.+|+|||.++.+||.|+|.++++|+++
T Consensus        94 ~i~y~~~~---~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv----~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt  165 (222)
T cd08871          94 DIGYYSAK---CPKPLKNRDFVNLRSWLEFG-GEYIIFNHSV----KHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLT  165 (222)
T ss_pred             EEEEEEeE---CCCCCCCCeEEEEEEEEeCC-CEEEEEeccc----cCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEE
Confidence            99999998   788 9999999998876554 7777777776    7899999999999999999999999988889999


Q ss_pred             EEEeecCCCCccHHHHHHHHhHHHH-HHHHHHHHHHhCCC
Q 028749          162 YVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQACPT  200 (204)
Q Consensus       162 ~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~~~  200 (204)
                      |+.++||+|+||.||+|++++.++. ++++|++.++++++
T Consensus       166 ~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~  205 (222)
T cd08871         166 YVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPE  205 (222)
T ss_pred             EEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988776 99999999999874

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms] Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF11274 DUF3074: Protein of unknown function (DUF3074) Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] Back     alignment and domain information
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism] Back     alignment and domain information
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain Back     alignment and domain information
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT) Back     alignment and domain information
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>COG3832 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 1e-25
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 2e-25
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 3e-25
3qsz_A189 STAR-related lipid transfer protein; structural ge 8e-24
2pso_A237 STAR-related lipid transfer protein 13; alpha and 1e-23
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 8e-22
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 2e-20
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 2e-17
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 6e-16
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229 Back     alignment and structure
 Score = 98.2 bits (244), Expect = 1e-25
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 28  SKRRSGSLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNLSIIRL 87
           +        TF  +  L   +   +  V    +    W+  +   + ++ +EDN  I   
Sbjct: 58  TIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYD 117

Query: 88  RFGEHSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSG 147
                +  +   R+F+   R E   D  L   +A+          P  +  +RG     G
Sbjct: 118 VSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSA-----KPPTHKYVRGENGPGG 172

Query: 148 WVVEKLED--DSCMVTYVVQLDPAGWVPKCFVNR-LNTKLVMIIENLRKLAQA 197
            +V K       C   +++  D  G +P+  +++ L   +     +LR+    
Sbjct: 173 MIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISE 225
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224 Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 204
d2psoa1197 d.129.3.2 (A:908-1104) Star-related lipid transfer 4e-22
d1em2a_214 d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu 9e-22
d1jssa_199 d.129.3.2 (A:) Cholesterol-regulated Start protein 2e-18
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 1e-17
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Length = 197 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Star-related lipid transfer protein 13
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.0 bits (215), Expect = 4e-22
 Identities = 25/172 (14%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 26  KISKRRSG---SLHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLEDNL 82
            ++ ++ G    L  +++   +++        V   +     WD D V+ K ++ L+   
Sbjct: 31  DLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRV---LRERHLWDEDFVQWKVVETLDRQT 87

Query: 83  SIIRLRFGEHSKPLFRNREFIVYER-RETMEDGTLVVAVASLPKEIAAGLHPKQNNSIRG 141
            I +     +S     +R+F+V    +  +  G   +   S+  E       +    +R 
Sbjct: 88  EIYQYVL--NSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHE-----EAQLLGGVRA 140

Query: 142 LLLQSGWVVEKLEDDSCMVTYVVQLDPAGWVPKCFVNRLNTKLVMIIENLRK 193
           +++ S +++E        +T++ ++D  G  P+ +           +  +R 
Sbjct: 141 VVMDSQYLIEPCGSGKSRLTHICRIDLKGHSPEWYSKGFGHLCAAEVARIRN 192
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Length = 199 Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 100.0
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 100.0
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 100.0
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 100.0
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 99.21
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 99.12
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 98.97
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 98.53
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 98.45
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 98.38
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 98.36
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 97.08
d1z94a1143 Hypothetical protein CV1439 {Chromobacterium viola 95.95
d2il5a1164 Hypothetical protein SA2116 {Staphylococcus aureus 94.14
d2qpva1133 Uncharacterized protein Atu1531 {Agrobacterium tum 93.13
d1xfsa_165 Hypothetical protein NE0264 {Nitrosomonas europaea 92.72
d1xn6a_143 Hypothetical protein BC4709 {Bacillus cereus [TaxI 91.7
d1zxfa1155 Calicheamicin gene cluster protein CalC {Micromono 89.87
d3elia1143 Uncharacterized protein SPO3351 {Silicibacter pome 88.56
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-39  Score=224.29  Aligned_cols=180  Identities=17%  Similarity=0.288  Sum_probs=157.8

Q ss_pred             CCCCCCCCEE--CCCCEEEEEEEEEEECCCCCC-EEEEEEEEEEECCCHHHHHHHHHCCCCCCCCHHHCCCEEEEEEECC
Q ss_conf             9989999377--179908999983430236896-3499999997039989999998535641451020312043234168
Q 028749            4 PAPCSRSWSI--SEDSLRRYVHFAKISKRRSGS-LHTFRSRWLLKSVSPQQFITVANAIDAAKQWDSDLVEAKYIKDLED   80 (204)
Q Consensus         4 ~~~~~~~Wk~--~~~gv~vy~~~~~~~~~~~~~-~~~~k~~~~i~~~~~~~v~~~l~d~e~r~~wd~~~~~~~~l~~~~~   80 (204)
                      +...+.+|++  +++|+++|++..      +++ +..+|++++|++++++.+++++.|++.|++||+.+.+  +++.++.
T Consensus        16 ~~~~~~~W~~~~~~~gv~vy~~~~------~~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~~~~~--~~~~~~~   87 (203)
T d1ln1a_          16 PALAGADWQLLVETSGISIYRLLD------KKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKE--LYEQECN   87 (203)
T ss_dssp             CCCTTTTCEEEEEETTEEEEEEEE------TTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEE--EEEEEET
T ss_pred             CCCCCCCCEEEEECCCEEEEEEEC------CCCCCEEEEEEEEECCCCHHHHHHHHCCHHHHHHHCCCCEE--EEEECCC
T ss_conf             556999988988569879999763------99994899999999489999999997297675532354228--9999249


Q ss_pred             CEEEEEEEECCCCCCC-CCCCEEEEEEEEEEEC-C--CEEEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCC
Q ss_conf             7069999960788986-2698039999999917-9--8499999615753125999998992889997127999982899
Q 028749           81 NLSIIRLRFGEHSKPL-FRNREFIVYERRETME-D--GTLVVAVASLPKEIAAGLHPKQNNSIRGLLLQSGWVVEKLEDD  156 (204)
Q Consensus        81 ~~~i~~~~~~~~~~p~-v~~RDfv~~~~~~~~~-~--g~~~i~~~Sv~~s~~~~~~P~~~~~VR~~~~~~g~~i~~~~~~  156 (204)
                      ++.++|+.++   .|| +++||||+.+++...+ +  +.++++..|+    +||.+|+.+|+||+..+.++|+|+|.+++
T Consensus        88 ~~~i~y~~~~---~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~----~~~~~p~~~~~vR~~~~~~~~~l~~~~~~  160 (203)
T d1ln1a_          88 GETVVYWEVK---YPFPMSNRDYVYLRQRRDLDMEGRKIHVILARST----SMPQLGERSGVIRVKQYKQSLAIESDGKK  160 (203)
T ss_dssp             TEEEEEEEEC---CCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEEC----CBTTBCCCTTSEEECCEEEEEEEEECSSS
T ss_pred             CCEEEEEECC---CCCCCCCCEEEEEEEEEECCCCCCEEEEEEEECC----CCCCCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf             9689999842---4665677508999999981688972999995325----58867146885201046678999815899


Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHC
Q ss_conf             469999992348999218999988767789-999999998848
Q 028749          157 SCMVTYVVQLDPAGWVPKCFVNRLNTKLVM-IIENLRKLAQAC  198 (204)
Q Consensus       157 ~~~v~~~~~~D~~G~iP~~l~~~~~~~~~~-~~~~l~k~~~~~  198 (204)
                      +|+++|+.++||||+||.||+|+++++++. ++++|++.+.+|
T Consensus       161 ~t~v~~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~~~y  203 (203)
T d1ln1a_         161 GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY  203 (203)
T ss_dssp             SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             6899999986889868799999999987899999999998649
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]} Back     information, alignment and structure
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure