Citrus Sinensis ID: 028767

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHcHHHHHHHHHccccccccEccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmaayghqpvgypqfvgmpharmplplemaqepvyvNAKQYMGILRRRQARAKAELEKKLIKVrkpylhesrHQHAMRRargsggrfakktddaskgnsekkgggsgirpslsgsssgsepvpsdsaetwnssasqqdvggsqahNMHEARNhananggyqnhglqastyhshlgdrgetgdcsgkqwgsissnqasqrplaiq
Flexible Loop (DISEMBL)
MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIkvrkpylhesrhqhamrrargsggrfakktddaskgnsekkgggsgirpslsgsssgsePVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWgsissnqasqrplaiq
Low Complexity Region (SEG)
MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDAskgnsekkgggsgirpslsgsssgsepvpsdsAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Disordered region (IsUnstruct)
*********VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRR***********LIK**********************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************MAQEPVYVNAKQYMGILRRRQAR*********************************************************************************************************************************************************
Disordered Region (DISEMBL)
MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH***************************************************************************HNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGS**************
Disordered Region (DISPRO)
*MAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRA**S***FA********************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQRPLAIQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q945M9	303	Nuclear transcription fac	yes	no	0.808	0.544	0.538	2e-47
Q9LXV5	272	Nuclear transcription fac	no	no	0.632	0.474	0.646	3e-39
Q9LVJ7	308	Nuclear transcription fac	no	no	0.382	0.253	0.645	1e-23
Q93ZH2	340	Nuclear transcription fac	no	no	0.387	0.232	0.625	3e-23
Q84JP1	190	Nuclear transcription fac	no	no	0.519	0.557	0.532	6e-23
Q9SYH4	308	Nuclear transcription fac	no	no	0.446	0.295	0.552	6e-23
Q9LNP6	328	Nuclear transcription fac	no	no	0.401	0.25	0.584	1e-21
Q8VY64	198	Nuclear transcription fac	no	no	0.490	0.505	0.509	8e-21
Q54S29	517	Nuclear transcription fac	yes	no	0.362	0.143	0.636	3e-19
Q8LFU0	269	Nuclear transcription fac	no	no	0.514	0.390	0.491	9e-19

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/208 (53%), Positives = 130/208 (62%), Gaps = 43/208 (20%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           +M AYGH P+G+  + GMPH+RMPLP EMAQEPV+VNAKQY  ILRRRQARAKAELEKKL
Sbjct: 135 VMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKL 194

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRPSLSGSSSGS 119
           IK RKPYLHESRHQHAMRR RG+GGRFAKKT+ +ASK  +E+K  G   +   S SSS  
Sbjct: 195 IKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQ---SPSSSN- 250

Query: 120 EPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGY---QNHGLQASTYHSHLGD 176
               SD  E W                          NG Y   Q   +Q+S Y      
Sbjct: 251 ----SDQGEAW--------------------------NGDYRTPQGDEMQSSAY-----K 275

Query: 177 RGETGDCSGKQWGSISSNQASQRPLAIQ 204
           R E G+CSG+QW S+SSN  SQ  LAI+
Sbjct: 276 RREEGECSGQQWNSLSSNHPSQARLAIK 303

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 103/133 (77%), Gaps = 4/133 (3%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           +M AYGHQ +G+  ++GMP  R  LPL+MAQEPVYVNAKQY GILRRR+ARAKAELE+K+
Sbjct: 141 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 200

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
           I+ RKPYLHESRH+HAMRRAR SGGRFAKK++  +    E  GG    R S + +SSGSE
Sbjct: 201 IRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEA---GEDAGGRDRERGSAT-NSSGSE 256

Query: 121 PVPSDSAETWNSS 133
            V +DS ET NSS
Sbjct: 257 QVETDSNETLNSS 269

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%), Gaps = 1/79 (1%)

Query: 10  VGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYL 68
           V +PQ  G+  +RMPLP  + + EP++VNAKQY  ILRRR+ RAK E + KLIKVRKPYL
Sbjct: 148 VQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYL 207

Query: 69  HESRHQHAMRRARGSGGRF 87
           HESRH HA++R RGSGGRF
Sbjct: 208 HESRHLHALKRVRGSGGRF 226

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 1/80 (1%)

Query: 9   PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPY 67
           P   PQ V M   R+PLP E+ + +PV+VNAKQY  I+RRRQ RAK E + KLI+ RKPY
Sbjct: 155 PTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPY 214

Query: 68  LHESRHQHAMRRARGSGGRF 87
           LHESRH HA++R RGSGGRF
Sbjct: 215 LHESRHVHALKRPRGSGGRF 234

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 77/109 (70%), Gaps = 3/109 (2%)

Query: 14  QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRH 73
           Q +G+    +PLP +  +EPV+VNAKQY GILRRRQ+RA+ E + K+IK RKPYLHESRH
Sbjct: 82  QLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRH 141

Query: 74  QHAMRRARGSGGRF--AKKTDDASKGNS-EKKGGGSGIRPSLSGSSSGS 119
            HA+RR RG GGRF  AKK D+  + +S E+K   S  + +++ SS  S
Sbjct: 142 LHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS 190

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 5/96 (5%)

Query: 5   YGHQPVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLI 61
           Y   P   P  + +G+  +R+PLP  + + EP++VNAKQY  ILRRR+ RAK E + KLI
Sbjct: 148 YASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLI 207

Query: 62  KVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDAS 95
           K RKPYLHESRH HA++RARGSGGRF   KK  ++S
Sbjct: 208 KCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESS 243

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 63/89 (70%), Gaps = 7/89 (7%)

Query: 1   MMAAYGHQPVGY-PQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEK 58
           M AAY  Q   + PQ       R+PLP ++ + EPV+VNAKQ+  I+RRRQ RAK E + 
Sbjct: 144 MPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQN 198

Query: 59  KLIKVRKPYLHESRHQHAMRRARGSGGRF 87
           KLIK RKPYLHESRH HA++R RGSGGRF
Sbjct: 199 KLIKARKPYLHESRHVHALKRPRGSGGRF 227

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  100 bits (249), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 67/106 (63%), Gaps = 6/106 (5%)

Query: 1   MMAAYGHQPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAEL 56
           + A   + P  YP    Q +GM    +PL  +  +EPV+VNAKQY GILRRRQ+RAK E 
Sbjct: 63  VFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEA 122

Query: 57  EKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDASKGNSE 100
             + IK +KPY+HESRH HA+RR RG GGRF  AKK +   K   E
Sbjct: 123 RNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKENGDHKEEEE 168

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54S29|NFYA_DICDI Nuclear transcription factor Y subunit alpha OS=Dictyostelium discoideum GN=nfyA PE=3 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 55/77 (71%), Gaps = 3/77 (3%)

Query: 18  MPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAM 77
           M +ARM    E+ +EP+YVNAKQY  IL+RR ARAK E E KL K RK Y HESRHQHA+
Sbjct: 218 MLYARMA---EIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAI 274

Query: 78  RRARGSGGRFAKKTDDA 94
           RR RG GGRF  K D A
Sbjct: 275 RRQRGCGGRFLTKADQA 291

Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score = 93.2 bits (230), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 73/116 (62%), Gaps = 11/116 (9%)

Query: 22  RMPLPLEMAQE---PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMR 78
           R+ +PL+M  E    +YVN+KQY GI+RRRQ+RAKAE   KL + RKPY+H SRH HAMR
Sbjct: 121 RVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMR 177

Query: 79  RARGSGGRFA-KKTDDASKGNSEKKGGGSGI----RPSLSGSSSGSEPVPSDSAET 129
           R RGSGGRF   KT DA+K +       S +      +++ S   +E   SDSA T
Sbjct: 178 RPRGSGGRFLNTKTADAAKQSKPSNSQSSEVFHPENETINSSREANESNLSDSAVT 233

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
356552340	327	PREDICTED: nuclear transcription factor	0.960	0.599	0.671	2e-63
255544876	350	Nuclear transcription factor Y subunit A	0.995	0.58	0.681	6e-63
255638811	307	unknown [Glycine max]	0.916	0.609	0.671	1e-61
356566267	338	PREDICTED: nuclear transcription factor	0.916	0.553	0.694	2e-61
357460373	289	Nuclear transcription factor Y subunit [	0.911	0.643	0.658	4e-61
356552338	307	PREDICTED: nuclear transcription factor	0.950	0.631	0.660	4e-61
388523189	329	nuclear transcription factor Y subunit A	0.911	0.565	0.658	1e-60
357460371	349	Nuclear transcription factor Y subunit [	0.911	0.532	0.658	2e-60
356527208	336	PREDICTED: nuclear transcription factor	0.911	0.553	0.693	4e-60
356527210	338	PREDICTED: nuclear transcription factor	0.911	0.550	0.693	5e-60

>gi|356552340|ref|XP_003544526.1| PREDICTED: nuclear transcription factor Y subunit A-9-like isoform 2 [Glycine max]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 155/207 (74%), Gaps = 11/207 (5%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MM A+ HQ +GY  F+GMPHARM LPLEMAQEPVYVNAKQY GILRRRQARAKAELEKKL
Sbjct: 129 MMIAHVHQQLGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKL 188

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRP-SLSGSSSG 118
           IKVRKPYLHESRHQHA+RRARG+GGRFAKKT+ +AS   +E+K  G+G  P S S SSSG
Sbjct: 189 IKVRKPYLHESRHQHAIRRARGNGGRFAKKTEVEASNHMNEEKDMGTGQVPLSRSISSSG 248

Query: 119 SEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQ-ASTYHSHLGDR 177
              +PSDSAETWNS + QQ   GSQ H   E RN+AN         LQ +ST   H G+R
Sbjct: 249 FGSLPSDSAETWNSPSVQQGARGSQVHERFEERNYANV--------LQSSSTSCLHSGER 300

Query: 178 GETGDCSGKQWGSISSNQASQRPLAIQ 204
            E GDCSG+Q GSISS   SQR LAIQ
Sbjct: 301 AEEGDCSGQQRGSISSEHTSQRRLAIQ 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544876|ref|XP_002513499.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223547407|gb|EEF48902.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  245 bits (626), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 157/207 (75%), Gaps = 4/207 (1%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMA YGHQP+GYP F+G    RM LP E+AQEPVYVNAKQY GILRRRQARAKAE EKKL
Sbjct: 145 MMAPYGHQPLGYP-FLGGHQVRMALPNEIAQEPVYVNAKQYPGILRRRQARAKAEHEKKL 203

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKT-DDASKGNSEKKGGGSGIRP-SLSGSSSG 118
           IKVRKPYLHESRHQHAMRRARGSGGRFAKKT  D SK N E     +G  P S SGSSSG
Sbjct: 204 IKVRKPYLHESRHQHAMRRARGSGGRFAKKTGGDDSKNNKEGTANDTGAIPSSQSGSSSG 263

Query: 119 SEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNH-GLQASTYHSHLGDR 177
           SE +PSDSA+TWN     Q++  ++ ++  EARNH N    YQNH GLQ   +H H G++
Sbjct: 264 SEQLPSDSAQTWNLPHGDQELRSARVYDTSEARNHINGGSHYQNHSGLQTLKHHPHSGEK 323

Query: 178 GETGDCSGKQWGSISSNQASQRPLAIQ 204
           GE  DCSG+Q GSISSNQ SQRPLAIQ
Sbjct: 324 GEDEDCSGQQRGSISSNQVSQRPLAIQ 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638811|gb|ACU19709.1| unknown [Glycine max]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 150/198 (75%), Gaps = 11/198 (5%)

Query: 10  VGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLH 69
           +GY  F+GMPHARM LPLEMAQEPVYVNAKQY GILRRRQARAKAELEKKLIKVRKPYLH
Sbjct: 118 IGYTPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLH 177

Query: 70  ESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRP-SLSGSSSGSEPVPSDSA 127
           ESRHQHA+RRARG+GGRFAKKT+ +AS   +++K  G+G  P S S SSSG   +PSDSA
Sbjct: 178 ESRHQHAIRRARGNGGRFAKKTEVEASNHMNKEKDMGTGQVPLSRSISSSGFGSLPSDSA 237

Query: 128 ETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQ-ASTYHSHLGDRGETGDCSGK 186
           ETWNS + QQD  GSQ H   E RN+AN         LQ +ST+  H G+R E GDCSG+
Sbjct: 238 ETWNSPSVQQDARGSQVHERFEERNYANV--------LQSSSTFCLHSGERVEEGDCSGQ 289

Query: 187 QWGSISSNQASQRPLAIQ 204
           Q GSI S   SQR LAIQ
Sbjct: 290 QRGSILSEHTSQRRLAIQ 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566267|ref|XP_003551355.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 146/190 (76%), Gaps = 3/190 (1%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMAAYGHQ +GY  F+GMPHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KL
Sbjct: 145 MMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKL 204

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNS--EKKGGGSGIRPSLSGSSSG 118
           IK RKPYLHESRHQHAMRRARG+GGRFAKKTD     +S  EK  G   +  S S SSSG
Sbjct: 205 IKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSSG 264

Query: 119 SEPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNH-GLQASTYHSHLGDR 177
           SEP+ SDSAETWNS   QQD   S+ HN  +A  + N +G Y NH GLQ+S YHS  G+R
Sbjct: 265 SEPLHSDSAETWNSPNMQQDARASKVHNRFKAPCYQNGSGSYHNHNGLQSSVYHSSSGER 324

Query: 178 GETGDCSGKQ 187
            E  DCSG+Q
Sbjct: 325 LEERDCSGQQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460373|ref|XP_003600468.1| Nuclear transcription factor Y subunit [Medicago truncatula] gi|355489516|gb|AES70719.1| Nuclear transcription factor Y subunit [Medicago truncatula]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 153/208 (73%), Gaps = 22/208 (10%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMAAY HQP+GYP F+G+PHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KL
Sbjct: 100 MMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKL 159

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
           IK RKPYLHESRHQHA+RRARG+GGRFAKKTD  + G   K  G   +  S S SSSGSE
Sbjct: 160 IKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASG---KDNGSGPVLSSQSISSSGSE 216

Query: 121 PVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGY----QNHGLQASTYHSHLGD 176
            +PSDSAETWNS   +QD  GS            N NGG      N+G+Q+S Y    G+
Sbjct: 217 LLPSDSAETWNSPNMRQDARGS------------NENGGSSYHNNNNGMQSSRYQ---GE 261

Query: 177 RGETGDCSGKQWGSISSNQASQRPLAIQ 204
           R E GDCSG+   SISSN+ASQR LAIQ
Sbjct: 262 RVEEGDCSGQLRVSISSNEASQRRLAIQ 289

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552338|ref|XP_003544525.1| PREDICTED: nuclear transcription factor Y subunit A-9-like isoform 1 [Glycine max]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 136/206 (66%), Positives = 152/206 (73%), Gaps = 12/206 (5%)

Query: 2   MAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLI 61
           +   GH  +GY  F+GMPHARM LPLEMAQEPVYVNAKQY GILRRRQARAKAELEKKLI
Sbjct: 111 LELVGHS-IGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLI 169

Query: 62  KVRKPYLHESRHQHAMRRARGSGGRFAKKTD-DASKGNSEKKGGGSGIRP-SLSGSSSGS 119
           KVRKPYLHESRHQHA+RRARG+GGRFAKKT+ +AS   +E+K  G+G  P S S SSSG 
Sbjct: 170 KVRKPYLHESRHQHAIRRARGNGGRFAKKTEVEASNHMNEEKDMGTGQVPLSRSISSSGF 229

Query: 120 EPVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGYQNHGLQ-ASTYHSHLGDRG 178
             +PSDSAETWNS + QQ   GSQ H   E RN+AN         LQ +ST   H G+R 
Sbjct: 230 GSLPSDSAETWNSPSVQQGARGSQVHERFEERNYANV--------LQSSSTSCLHSGERA 281

Query: 179 ETGDCSGKQWGSISSNQASQRPLAIQ 204
           E GDCSG+Q GSISS   SQR LAIQ
Sbjct: 282 EEGDCSGQQRGSISSEHTSQRRLAIQ 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523189|gb|AFK49647.1| nuclear transcription factor Y subunit A5 [Medicago truncatula]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 153/208 (73%), Gaps = 22/208 (10%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMAAY HQP+GYP F+G+PHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KL
Sbjct: 140 MMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKL 199

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
           IK RKPYLHESRHQHA+RRARG+GGRFAKKTD  + G   K  G   +  S S SSSGSE
Sbjct: 200 IKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASG---KDNGSGPVLSSQSISSSGSE 256

Query: 121 PVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGGY----QNHGLQASTYHSHLGD 176
            +PSDSAETWNS   +QD  GS            N NGG      N+G+Q+S Y    G+
Sbjct: 257 LLPSDSAETWNSPNMRQDARGS------------NENGGSSYHNNNNGMQSSRYQ---GE 301

Query: 177 RGETGDCSGKQWGSISSNQASQRPLAIQ 204
           R E GDCSG+   SISSN+ASQR LAIQ
Sbjct: 302 RVEEGDCSGQLRVSISSNEASQRRLAIQ 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460371|ref|XP_003600467.1| Nuclear transcription factor Y subunit [Medicago truncatula] gi|355489515|gb|AES70718.1| Nuclear transcription factor Y subunit [Medicago truncatula]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 137/208 (65%), Positives = 153/208 (73%), Gaps = 22/208 (10%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMAAY HQP+GYP F+G+PHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KL
Sbjct: 160 MMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKL 219

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
           IK RKPYLHESRHQHA+RRARG+GGRFAKKTD  + G   K  G   +  S S SSSGSE
Sbjct: 220 IKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASG---KDNGSGPVLSSQSISSSGSE 276

Query: 121 PVPSDSAETWNSSASQQDVGGSQAHNMHEARNHANANGG----YQNHGLQASTYHSHLGD 176
            +PSDSAETWNS   +QD  GS            N NGG      N+G+Q+S Y    G+
Sbjct: 277 LLPSDSAETWNSPNMRQDARGS------------NENGGSSYHNNNNGMQSSRYQ---GE 321

Query: 177 RGETGDCSGKQWGSISSNQASQRPLAIQ 204
           R E GDCSG+   SISSN+ASQR LAIQ
Sbjct: 322 RVEEGDCSGQLRVSISSNEASQRRLAIQ 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527208|ref|XP_003532204.1| PREDICTED: nuclear transcription factor Y subunit A-1-like isoform 1 [Glycine max]

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 144/189 (76%), Gaps = 3/189 (1%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMAAYGHQ +GY  F+GMPHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KL
Sbjct: 145 MMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKL 204

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
           IK RKPYLHESRHQHAMRRARG+GGRFAKKT D    N   K   +G     S SSSGSE
Sbjct: 205 IKSRKPYLHESRHQHAMRRARGTGGRFAKKT-DGEGSNHLGKEKDNGTDSVQSISSSGSE 263

Query: 121 PVPSDSAETWNSSASQQDVGGSQAHN-MHEARNHANANGGYQNH-GLQASTYHSHLGDRG 178
           P+ SDSAETWNS   QQD   S+ HN   EA ++ N +G Y NH GLQ+S YHS  G+R 
Sbjct: 264 PLHSDSAETWNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERV 323

Query: 179 ETGDCSGKQ 187
           E  DCSG+Q
Sbjct: 324 EERDCSGQQ 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527210|ref|XP_003532205.1| PREDICTED: nuclear transcription factor Y subunit A-1-like isoform 2 [Glycine max]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 144/189 (76%), Gaps = 3/189 (1%)

Query: 1   MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
           MMAAYGHQ +GY  F+GMPHARMPLPLEMAQEPVYVNAKQY GILRRRQARAKAELE+KL
Sbjct: 147 MMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKL 206

Query: 61  IKVRKPYLHESRHQHAMRRARGSGGRFAKKTDDASKGNSEKKGGGSGIRPSLSGSSSGSE 120
           IK RKPYLHESRHQHAMRRARG+GGRFAKKT D    N   K   +G     S SSSGSE
Sbjct: 207 IKSRKPYLHESRHQHAMRRARGTGGRFAKKT-DGEGSNHLGKEKDNGTDSVQSISSSGSE 265

Query: 121 PVPSDSAETWNSSASQQDVGGSQAHN-MHEARNHANANGGYQNH-GLQASTYHSHLGDRG 178
           P+ SDSAETWNS   QQD   S+ HN   EA ++ N +G Y NH GLQ+S YHS  G+R 
Sbjct: 266 PLHSDSAETWNSPNMQQDARASKVHNSRFEAPSYQNGSGSYHNHNGLQSSVYHSSSGERV 325

Query: 179 ETGDCSGKQ 187
           E  DCSG+Q
Sbjct: 326 EERDCSGQQ 334

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.450	0.303	0.804	3.3e-45
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.450	0.338	0.739	1.2e-33
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.406	0.269	0.623	4.8e-23
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.392	0.421	0.621	1.6e-22
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.441	0.292	0.547	7e-22
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.426	0.255	0.588	1.5e-21
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.441	0.454	0.541	3e-21
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.436	0.271	0.557	4.9e-21
DICTYBASE|DDB_G0282697	517	nfyA "putative CCAAT-binding t	0.857	0.338	0.346	2e-19
UNIPROTKB|E1C961	318	NFYA "Uncharacterized protein"	0.357	0.229	0.631	2.2e-18

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 74/92 (80%), Positives = 82/92 (89%)

Query:     1 MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
             +M AYGH P+G+  + GMPH+RMPLP EMAQEPV+VNAKQY  ILRRRQARAKAELEKKL
Sbjct:   135 VMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKL 194

Query:    61 IKVRKPYLHESRHQHAMRRARGSGGRFAKKTD 92
             IK RKPYLHESRHQHAMRR RG+GGRFAKKT+
Sbjct:   195 IKSRKPYLHESRHQHAMRRPRGTGGRFAKKTN 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 68/92 (73%), Positives = 81/92 (88%)

Query:     1 MMAAYGHQPVGYPQFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKL 60
             +M AYGHQ +G+  ++GMP  R  LPL+MAQEPVYVNAKQY GILRRR+ARAKAELE+K+
Sbjct:   141 LMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKV 200

Query:    61 IKVRKPYLHESRHQHAMRRARGSGGRFAKKTD 92
             I+ RKPYLHESRH+HAMRRAR SGGRFAKK++
Sbjct:   201 IRDRKPYLHESRHKHAMRRARASGGRFAKKSE 232

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/85 (62%), Positives = 64/85 (75%)

Query:     5 YGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIK 62
             Y  Q  V +PQ  G+  +RMPLP  + + EP++VNAKQY  ILRRR+ RAK E + KLIK
Sbjct:   142 YASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIK 201

Query:    63 VRKPYLHESRHQHAMRRARGSGGRF 87
             VRKPYLHESRH HA++R RGSGGRF
Sbjct:   202 VRKPYLHESRHLHALKRVRGSGGRF 226

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/82 (62%), Positives = 63/82 (76%)

Query:    14 QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRH 73
             Q +G+    +PLP +  +EPV+VNAKQY GILRRRQ+RA+ E + K+IK RKPYLHESRH
Sbjct:    82 QLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRH 141

Query:    74 QHAMRRARGSGGRF--AKKTDD 93
              HA+RR RG GGRF  AKK D+
Sbjct:   142 LHAIRRPRGCGGRFLNAKKEDE 163

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 52/95 (54%), Positives = 67/95 (70%)

Query:     5 YGHQPVGYP--QFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLI 61
             Y   P   P  + +G+  +R+PLP  + + EP++VNAKQY  ILRRR+ RAK E + KLI
Sbjct:   148 YASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLI 207

Query:    62 KVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDA 94
             K RKPYLHESRH HA++RARGSGGRF   KK  ++
Sbjct:   208 KCRKPYLHESRHLHALKRARGSGGRFLNTKKLQES 242

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 53/90 (58%), Positives = 64/90 (71%)

Query:     1 MMAAYGHQ-PVGYPQFVGMPHARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEK 58
             + A Y  Q P   PQ V M   R+PLP E+ + +PV+VNAKQY  I+RRRQ RAK E + 
Sbjct:   146 LAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQN 205

Query:    59 KLIKVRK-PYLHESRHQHAMRRARGSGGRF 87
             KLI+ RK PYLHESRH HA++R RGSGGRF
Sbjct:   206 KLIRARKVPYLHESRHVHALKRPRGSGGRF 235

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 52/96 (54%), Positives = 64/96 (66%)

Query:     1 MMAAYGHQPVGYP----QFVGMPHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAEL 56
             + A   + P  YP    Q +GM    +PL  +  +EPV+VNAKQY GILRRRQ+RAK E 
Sbjct:    63 VFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEA 122

Query:    57 EKKLIKVRKPYLHESRHQHAMRRARGSGGRF--AKK 90
               + IK +KPY+HESRH HA+RR RG GGRF  AKK
Sbjct:   123 RNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 53/95 (55%), Positives = 66/95 (69%)

Query:     6 GHQPVGY-PQF-VGMPH-ARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLI 61
             G  P  Y PQ  +  P   R+PLP ++ + EPV+VNAKQ+  I+RRRQ RAK E + KLI
Sbjct:   142 GLMPAAYLPQATIWNPQMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLI 201

Query:    62 KVRKPYLHESRHQHAMRRARGSGGRF--AKKTDDA 94
             K RKPYLHESRH HA++R RGSGGRF   KK  ++
Sbjct:   202 KARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

DICTYBASE|DDB_G0282697 nfyA "putative CCAAT-binding transcription factor, chain A" [Dictyostelium discoideum (taxid:44689)]

 Score = 239 (89.2 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 63/182 (34%), Positives = 80/182 (43%)

Query:    19 PHARMPLPLEMAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMR 78
             PH       E+ +EP+YVNAKQY  IL+RR ARAK E E KL K RK Y HESRHQHA+R
Sbjct:   216 PHMLYARMAEIVEEPLYVNAKQYNRILKRRAARAKLESENKLPKTRKAYQHESRHQHAIR 275

Query:    79 RARGSGGRFAKKTDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETWNSSASQQD 138
             R RG GGRF  K D A                                    N++ +  +
Sbjct:   276 RQRGCGGRFLTKADQAKLDAQNAANAAAAAANPNASSTSTTTSNIT------NNNNNNNN 329

Query:   139 VGGSQAHNMHEARNHANANGGYQNHGLQASTYHSHLGDRGETGDCSGKQWGSISSNQASQ 198
                +  +N +   N  N +GG       AS+      D     D +  +  S S NQ+S 
Sbjct:   330 NNNTNNNNNNNNTN-VNGSGGSGGSNKIASSDDDIENDVENDSDSANIKNNSNSPNQSSS 388

Query:   199 RP 200
              P
Sbjct:   389 SP 390

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E1C961 NFYA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 48/76 (63%), Positives = 57/76 (75%)

Query:    22 RMPLP-LEMAQE-PVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR 79
             R+PLP  EM +E P+YVNAKQY  IL+RRQARAK E E K+ K R+ YLHESRH+HAM R
Sbjct:   222 RIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMAR 281

Query:    80 ARGSGGRF-AKKTDDA 94
              RG GGRF + K  D+
Sbjct:   282 KRGEGGRFFSPKEKDS 297

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	204
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	8e-32
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	3e-31
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	1e-09

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  109 bits (274), Expect = 8e-32
 Identities = 47/57 (82%), Positives = 49/57 (85%)

Query: 31 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 87
           EP+YVNAKQY  ILRRRQARAK E E KLIK RKPYLHESRH+HAMRR RGSGGRF
Sbjct: 1  DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  108 bits (271), Expect = 3e-31
 Identities = 46/62 (74%), Positives = 48/62 (77%)

Query: 29 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFA 88
            +EPVYVNAKQY  ILRRRQARAK E + KL K RKPYLHESRH HAMRR RGSGGRF 
Sbjct: 1  AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 89 KK 90
            
Sbjct: 61 NT 62

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 30  AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAK 89
           + +P YVNAKQ   I +R   R    L+  +   R  YLHESRH+HAM R R   GRF  
Sbjct: 157 SFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLT 214

Query: 90  KTD 92
            ++
Sbjct: 215 ASE 217

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.8

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=4.3e-40  Score=293.33  Aligned_cols=89  Identities=62%  Similarity=0.943  Sum_probs=84.9

Q ss_pred             ccCCCCCC--CCcccCCCC-CCCCCCCCCCC-CccccCchhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhHHHhhc
Q 028767            4 AYGHQPVG--YPQFVGMPH-ARMPLPLEMAQ-EPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRR   79 (204)
Q Consensus         4 ~yg~q~~~--~p~~~Gm~~-~r~~LP~e~~~-ePvyVNaKQY~rIlrRR~~Rak~e~~~kl~k~rk~YlHESRH~HAm~R   79 (204)
                      +|++|++.  .+++.||.+ .|+|||.++.+ ||||||||||++|||||++|||||+++||+|.||||||||||+|||||
T Consensus       152 ~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR  231 (307)
T KOG1561|consen  152 AYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKR  231 (307)
T ss_pred             cccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhc
Confidence            79999874  778899988 99999999876 999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCC
Q 028767           80 ARGSGGRFAKKTD   92 (204)
Q Consensus        80 ~RG~gGRFl~k~e   92 (204)
                      +||+|||||++++
T Consensus       232 ~RG~GGRFln~k~  244 (307)
T KOG1561|consen  232 ARGEGGRFLNTKE  244 (307)
T ss_pred             ccCCCCCCCchhh
Confidence            9999999999888

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=8.6e-38  Score=225.53  Aligned_cols=62  Identities=74%  Similarity=1.065  Sum_probs=60.1

Q ss_pred             CCCCccccCchhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhHHHhhcCCCCCCccccc
Q 028767           29 MAQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKK   90 (204)
Q Consensus        29 ~~~ePvyVNaKQY~rIlrRR~~Rak~e~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k   90 (204)
                      ++++|||||||||++|||||++|||+|+++++++.||||||||||+|||+|+||+|||||++
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999984

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=1e-35  Score=212.43  Aligned_cols=57  Identities=79%  Similarity=1.182  Sum_probs=56.2

Q ss_pred             CCccccCchhhHHHHHHHHHHHHHHHhhhh-hhcCCCcchhhhhHHHhhcCCCCCCcc
Q 028767           31 QEPVYVNAKQYMGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGSGGRF   87 (204)
Q Consensus        31 ~ePvyVNaKQY~rIlrRR~~Rak~e~~~kl-~k~rk~YlHESRH~HAm~R~RG~gGRF   87 (204)
                      ++|||||||||++|||||++|||+|+++++ ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.80  E-value=1.4e-20  Score=163.83  Aligned_cols=61  Identities=43%  Similarity=0.551  Sum_probs=55.2

Q ss_pred             CCCccccCchhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhhhhHHHhhcCCCCCCcccccCC
Q 028767           30 AQEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTD   92 (204)
Q Consensus        30 ~~ePvyVNaKQY~rIlrRR~~Rak~e~~~kl~k~rk~YlHESRH~HAm~R~RG~gGRFl~k~e   92 (204)
                      ..+|.|||+|||++|+|||-+|++++.  +|.-.|..|||||||+|||+|+|+++||||+++|
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~~ylHesrhkham~r~r~ptgrfLtasE  217 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASE  217 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--HhhhhhhhccccchhhhhhhcccCCCcceecHHh
Confidence            478999999999999999999987664  5666777799999999999999999999999988

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		8e-16
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		1e-13

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 46/57 (80%)
Query: 31 QEPVYVNAKQYMGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGSGGRF 87
          +EP+YVNAKQY  IL+RRQARAK E E K+ K R+ YLHESRH+HAM R RG GGRF
Sbjct: 2  EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRF 58

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 31 QEPVYVNAKQYMGILRRRQARAKAELEKKLI-KVRKPYLHESRHQHAMRRARGSGGRF 87
          + P+YVNAKQ+  IL+RR AR K E + +L  K RKPYLHESRH HAMRR RG GGRF
Sbjct: 2  ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00