Citrus Sinensis ID: 028768

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHEEEEEEEEEEEEEEEEHHccccHccHHHHccHHHHHHHHHHHHHcc
masmdpnlntnidelvsvqsppsekpklclvwnehyppgfLRKVIAEIIATYLLVFVTCGSAalsaydehrvSKLGASVAGGLIVTVMIYAVGhisgahmnPAVTLAFAAVrhfpwkqvPIYAAAQLTGAVSASLTLRVLLHpikhigttspsgsdLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
masmdpnlNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHigttspsgsdlQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
**************************KLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVL**
**********************************HYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
****************SVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHi
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MASMDPNLNTNIDELVSVQSPPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query204 2.2.26 [Sep-21-2011]
Q19KC1295 Aquaporin NIP2-1 OS=Zea m N/A no 0.955 0.661 0.597 3e-65
Q67WJ8298 Aquaporin NIP2-2 OS=Oryza yes no 0.960 0.657 0.603 9e-65
Q9ATN2294 Aquaporin NIP2-2 OS=Zea m N/A no 0.960 0.666 0.613 2e-64
Q6Z2T3298 Aquaporin NIP2-1 OS=Oryza no no 0.813 0.557 0.660 4e-64
Q9AT74301 Aquaporin NIP2-3 OS=Zea m N/A no 0.970 0.657 0.593 1e-62
Q40746284 Aquaporin NIP1-1 OS=Oryza no no 0.808 0.580 0.518 7e-45
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.808 0.585 0.506 3e-42
Q8W036283 Probable aquaporin NIP4-2 yes no 0.794 0.572 0.515 9e-40
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.799 0.550 0.497 4e-39
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi no no 0.808 0.561 0.456 3e-38
>sp|Q19KC1|NIP21_MAIZE Aquaporin NIP2-1 OS=Zea mays GN=NIP2-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 156/201 (77%), Gaps = 6/201 (2%)

Query: 7   NLNTNIDELVSVQS---PPSEKPKLCLVWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAA 63
           N N  I ++ + Q+   PP+   +      + +PP  L+KV++E+++T+LLVFVTCG+A 
Sbjct: 12  NFNNEIHDIGTAQNSSMPPTYYDRSLA---DIFPPHLLKKVVSEVVSTFLLVFVTCGAAG 68

Query: 64  LSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPIYA 123
           +   D+ R+S+LG SVAGGLIVTVMIYAVGHISGAHMNPAVTLAFA  RHFPW QVP Y 
Sbjct: 69  IYGSDKDRISQLGQSVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAVFRHFPWIQVPFYW 128

Query: 124 AAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKA 183
           AAQ TG++ AS  L+ +LHPI  +GTT+P+G    +L++EI+VTF+MMFVT AVATDT+A
Sbjct: 129 AAQFTGSICASFVLKAVLHPIAVLGTTTPTGPHWHSLVIEIIVTFNMMFVTLAVATDTRA 188

Query: 184 IGELAGIAVGSAVCITSVLAG 204
           +GELAG+AVGSAVCITS+ AG
Sbjct: 189 VGELAGLAVGSAVCITSIFAG 209
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Zea mays (taxid: 4577)
>sp|Q67WJ8|NIP22_ORYSJ Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATN2|NIP22_MAIZE Aquaporin NIP2-2 OS=Zea mays GN=NIP2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2T3|NIP21_ORYSJ Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AT74|NIP23_MAIZE Aquaporin NIP2-3 OS=Zea mays GN=NIP2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
359489000294 PREDICTED: aquaporin NIP2-1-like [Vitis 1.0 0.693 0.785 1e-88
255587854297 Silicon transporter, putative [Ricinus c 0.941 0.646 0.809 7e-85
327187682288 silicon transporter 1 [Cucurbita moschat 0.995 0.704 0.735 3e-84
33468424288 Nod26-like protein [Cucurbita pepo] 0.995 0.704 0.735 3e-84
327187680288 silicon transporter 1 [Cucurbita moschat 0.995 0.704 0.735 5e-84
449459480288 PREDICTED: aquaporin NIP2-1-like [Cucumi 0.950 0.673 0.768 6e-83
224141393278 aquaporin, MIP family, NIP subfamily [Po 0.955 0.701 0.75 6e-82
358442125209 Lsi-1 [Solanum lycopersicum] 0.848 0.827 0.833 2e-77
449459478261 PREDICTED: aquaporin NIP2-1-like [Cucumi 0.799 0.624 0.739 2e-68
255688227261 Si transport-like protein 2 [Cucumis sat 0.799 0.624 0.734 7e-68
>gi|359489000|ref|XP_002278054.2| PREDICTED: aquaporin NIP2-1-like [Vitis vinifera] gi|296082910|emb|CBI22211.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 165/210 (78%), Positives = 187/210 (89%), Gaps = 6/210 (2%)

Query: 1   MASMDPNLN--TNIDELVS-VQSPPSEKPKLCLVWN---EHYPPGFLRKVIAEIIATYLL 54
           MA+ DPNL+  T+I+EL + +  P S+    C +W    EHYPPGFLRKV+AE+IATYLL
Sbjct: 1   MATTDPNLSNSTSINELTTALHHPDSQNSNPCFLWRLFLEHYPPGFLRKVVAEVIATYLL 60

Query: 55  VFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHF 114
           VFVTCGSAALSA DE RVSKLGASVAGGLIVT MIYAVGHISGAHMNPAVTLAFAAVRHF
Sbjct: 61  VFVTCGSAALSASDEQRVSKLGASVAGGLIVTAMIYAVGHISGAHMNPAVTLAFAAVRHF 120

Query: 115 PWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPSGSDLQALIMEIVVTFSMMFVT 174
           PWKQVP+YAAAQLTGA+ A+ TLR LL+PIKH+GTT+PSG+++QAL+MEIVVTFSMMF+T
Sbjct: 121 PWKQVPLYAAAQLTGAIGAAFTLRELLYPIKHLGTTTPSGTEIQALVMEIVVTFSMMFIT 180

Query: 175 SAVATDTKAIGELAGIAVGSAVCITSVLAG 204
           SAVATDTKAIGELAGIAVGSAVCITS+LAG
Sbjct: 181 SAVATDTKAIGELAGIAVGSAVCITSILAG 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587854|ref|XP_002534417.1| Silicon transporter, putative [Ricinus communis] gi|223525328|gb|EEF27965.1| Silicon transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|327187682|dbj|BAK09176.1| silicon transporter 1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|33468424|emb|CAD67694.1| Nod26-like protein [Cucurbita pepo] Back     alignment and taxonomy information
>gi|327187680|dbj|BAK09175.1| silicon transporter 1 [Cucurbita moschata] Back     alignment and taxonomy information
>gi|449459480|ref|XP_004147474.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|449524302|ref|XP_004169162.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|255688225|gb|ACU29603.1| Si transport-like protein 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224141393|ref|XP_002324057.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222867059|gb|EEF04190.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358442125|gb|AEU11367.1| Lsi-1 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449459478|ref|XP_004147473.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] gi|449517689|ref|XP_004165877.1| PREDICTED: aquaporin NIP2-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255688227|gb|ACU29604.1| Si transport-like protein 2 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.838 0.573 0.660 8.1e-60
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.794 0.572 0.515 1.6e-38
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.799 0.550 0.497 2.6e-38
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.803 0.557 0.471 8.9e-38
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.794 0.572 0.503 1.1e-37
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.823 0.550 0.441 1e-36
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.794 0.532 0.469 2.1e-36
TAIR|locus:2826185 323 NIP3;1 "NOD26-like intrinsic p 0.803 0.507 0.413 8.5e-33
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.799 0.565 0.419 7.7e-32
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.848 0.629 0.353 4e-26
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 113/171 (66%), Positives = 143/171 (83%)

Query:    34 EHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVG 93
             + +PP  L+KV++E++AT+LLVF+TCG+A +S  D  R+S+LG S+AGGLIVTVMIYAVG
Sbjct:    41 DFFPPHLLKKVVSEVVATFLLVFMTCGAAGISGSDLSRISQLGQSIAGGLIVTVMIYAVG 100

Query:    94 HISGAHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHIGTTSPS 153
             HISGAHMNPAVTLAFA  RHFPW QVP Y AAQ TGA+ AS  L+ ++HP+  IGTT+P 
Sbjct:   101 HISGAHMNPAVTLAFAVFRHFPWIQVPFYWAAQFTGAICASFVLKAVIHPVDVIGTTTPV 160

Query:   154 GSDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG 204
             G    +L++E++VTF+MMFVT AVATDT+A+GELAG+AVGSAVCITS+ AG
Sbjct:   161 GPHWHSLVVEVIVTFNMMFVTLAVATDTRAVGELAGLAVGSAVCITSIFAG 211
GO:0005215 "transporter activity" evidence=ISS
GO:0015115 "silicate transmembrane transporter activity" evidence=IDA
GO:0015708 "silicate transport" evidence=IMP
GO:0016020 "membrane" evidence=IDA
GO:0048226 "Casparian strip" evidence=IDA
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q67WJ8NIP22_ORYSJNo assigned EC number0.60390.96070.6577yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-51
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 3e-50
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 8e-49
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 5e-35
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-34
pfam00230218 pfam00230, MIP, Major intrinsic protein 7e-33
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 6e-32
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-29
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-27
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 6e-19
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 2e-12
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 3e-11
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 2e-08
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-07
pfam00230218 pfam00230, MIP, Major intrinsic protein 7e-07
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-05
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 5e-05
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 6e-05
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 4e-04
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 7e-04
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information 
 Score =  167 bits (423), Expect = 2e-51
 Identities = 85/165 (51%), Positives = 114/165 (69%), Gaps = 3/165 (1%)

Query: 42  RKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMN 101
           +K+IAE+I TY ++F  CG   ++      ++  G  V  GLIV VMIY+ GHISGAH N
Sbjct: 43  QKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFN 102

Query: 102 PAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLH--PIKHIGTTSPSGSDLQA 159
           PAVT+ FA  R FPW QVP+Y  AQLTG++ ASLTLR++ +  P    GTT P+ S  QA
Sbjct: 103 PAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTT-PTDSSGQA 161

Query: 160 LIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG 204
           L+ EI+++F +MFV S VATD++A+GELAGIAVG  + +   +AG
Sbjct: 162 LVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFVAG 206

Length = 283
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 204
PLN00184296 aquaporin NIP1; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 99.97
PLN00027252 aquaporin TIP; Provisional 99.97
PLN00166250 aquaporin TIP2; Provisional 99.97
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.96
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.95
PLN00182283 putative aquaporin NIP4; Provisional 99.72
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.71
PLN00026298 aquaporin NIP; Provisional 99.68
PLN00183274 putative aquaporin NIP7; Provisional 99.68
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.65
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.59
PLN00184296 aquaporin NIP1; Provisional 99.57
PLN00166250 aquaporin TIP2; Provisional 99.52
PRK05420231 aquaporin Z; Provisional 99.51
PLN00027252 aquaporin TIP; Provisional 99.51
PTZ00016294 aquaglyceroporin; Provisional 99.48
PLN00167256 aquaporin TIP5; Provisional 99.45
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.41
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.36
KOG0224316 consensus Aquaporin (major intrinsic protein famil 98.72
PRK09713282 focB putative formate transporter; Provisional 81.69
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.8e-37  Score=263.64  Aligned_cols=169  Identities=48%  Similarity=0.782  Sum_probs=144.2

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhhccccccCccchhhHHHHHHHHHHHHHHHhccCcCcccchHHHHHHHHhccCC
Q 028768           36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP  115 (204)
Q Consensus        36 ~~~~~~~~~~~Ef~gT~~lv~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~i~~~g~iSG~hlNPAvTla~~l~g~~~  115 (204)
                      .+.+++|++++||+||++|+|++|++.+.....+...+++.++++||+++++.+++++++||+|+|||||+++++.|+++
T Consensus        49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~  128 (296)
T PLN00184         49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP  128 (296)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence            44578999999999999999999998765433222345677899999999999999999999999999999999999999


Q ss_pred             ccccchhhhhchHHHHHHHHHHHHHhcCcc--------cccccCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCccCcc
Q 028768          116 WKQVPIYAAAQLTGAVSASLTLRVLLHPIK--------HIGTTSPSGSDLQALIMEIVVTFSMMFVTSAVATDTKAIGEL  187 (204)
Q Consensus       116 ~~~~~~YiiaQ~lGa~~g~~l~~~~~~~~~--------~~~~~~p~~s~~~~~~~E~~~T~~L~~~i~~~~~d~~~~~~~  187 (204)
                      |.+.++|+++|++|+++|+++++.+++...        ....+.|..+.+++|+.|+++|++|++++++++.|++..+..
T Consensus       129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~  208 (296)
T PLN00184        129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL  208 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcc
Confidence            999999999999999999999999885221        112345666889999999999999999999987776655668


Q ss_pred             hHHHHHHHHHHHHhhcC
Q 028768          188 AGIAVGSAVCITSVLAG  204 (204)
Q Consensus       188 ~~~~iG~~v~~~~~~~G  204 (204)
                      .|+.||++|.+.+++.|
T Consensus       209 ~~l~IG~~v~~~~~~~g  225 (296)
T PLN00184        209 AGLAIGSTVLLNVLIAA  225 (296)
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence            99999999999988765

>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 3e-18
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 4e-18
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 6e-18
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 3e-17
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 2e-16
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 2e-16
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 3e-16
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-15
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 1e-14
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 1e-12
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-12
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 3e-12
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 6e-12
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 9e-12
3iyz_A 340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-11
2zz9_A 301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-11
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 1e-10
2d57_A 301 Double Layered 2d Crystal Structure Of Aquaporin-4 1e-10
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 2e-10
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 3e-10
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 4e-09
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 4e-08
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-08
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 4e-08
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-08
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-08
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 5e-08
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 7e-07
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 9e-07
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure 
Iteration: 1

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 92/177 (51%), Gaps = 15/177 (8%)
Query: 41  LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
            RK+ AE   T+ LVF  CGSA L+A + E  +   G ++A GL V  M +AVGHISG H
Sbjct: 5   FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLL------------HPIKHI 147
            NPAVT+   A   FP K+V  Y  AQ+ G + A+  L ++                   
Sbjct: 65  FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 148 GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLA 203
           G  SP G S L AL++E+V++   + V    ATD  A    A IA+G A+ +  +++
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLIS 180
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-52
2o9g_A234 Aquaporin Z; integral membrane protein, structural 5e-12
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 2e-51
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-11
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 6e-50
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 8e-12
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 6e-50
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-07
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 7e-49
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 3e-12
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 1e-48
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 9e-12
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-45
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 2e-04
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 2e-44
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 9e-12
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-43
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 5e-10
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-40
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 5e-11
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 7e-40
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-10
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 8e-37
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 6e-11
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 2e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
 Score =  167 bits (426), Expect = 1e-52
 Identities = 64/180 (35%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 39  GFLRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISG 97
              RK+ AE   T+ LVF   GSA L+A + E  +   G ++A GL V  M +AVGHISG
Sbjct: 3   HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62

Query: 98  AHMNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKHI---------- 147
            H NPAVT+   A   FP K+V  Y  AQ+ G + A+  L ++                 
Sbjct: 63  GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122

Query: 148 --GTTSPSG-SDLQALIMEIVVTFSMMFVTSAVATDTKAIGELAGIAVGSAVCITSVLAG 204
             G  SP G S L AL++E+V++   + V    ATD  A    A IA+G A  +  +++ 
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLISI 181
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 204
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 6e-25
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-04
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-23
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 1e-05
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 8e-21
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 2e-05
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-19
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 2e-06
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.2 bits (236), Expect = 6e-25
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 40  FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
           F R + AE  A+   VF   G++   A     +  L  ++A GL +  ++ AVGHISGAH
Sbjct: 4   FWRAICAEFFASLFYVFFGLGASLRWAPGP--LHVLQVALAFGLALATLVQAVGHISGAH 61

Query: 100 MNPAVTLAFAAVRHFPWKQVPIYAAAQLTGAVSASLTLRVLLHPIKH----IGTTSPSGS 155
           +NPAVT AF         +   Y  AQL GAV+ +  L  +  P       + T  P  S
Sbjct: 62  VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVS 121

Query: 156 DLQALIMEIVVTFSMMFVTSAVATDTK 182
             QA I+EI +T   +    A   + +
Sbjct: 122 VGQATIVEIFLTLQFVLCIFATYDERR 148
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.84
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.79
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.77
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.77
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-41  Score=211.66  Aligned_cols=165  Identities=28%  Similarity=0.337  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             37999999999999999998887433456667643146788999999999998426767655638789999841377663
Q 028768           39 GFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQ  118 (204)
Q Consensus        39 ~~~~~~~~E~igT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~SGahlNPAvTla~~l~g~~~~~~  118 (204)
                      .+.|++++||+||++|+|.++++.......+...+.+.+++++|+.+...+++++++||+|+|||||++.++.|+++|.+
T Consensus         1 tl~~~~lAEflGT~~lvf~g~g~~~~~~~~~~~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~~~   80 (254)
T d1fx8a_           1 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRK   80 (254)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHCCCCCHHH
T ss_conf             92669999999999999999999981102688764489999999999999999844564427715389999817886898


Q ss_pred             CCHHHHHCHHHHHHHHHHHHHHHCCCC--------------------CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             430100101789999999989753766--------------------30002799--88378789999999999999988
Q 028768          119 VPIYAAAQLTGAVSASLTLRVLLHPIK--------------------HIGTTSPS--GSDLQALIMEIVVTFSMMFVTSA  176 (204)
Q Consensus       119 ~~~yiiaQ~~Ga~~g~~l~~~~~~~~~--------------------~~~~~~p~--~s~~~~~~~E~~~T~~l~~~i~~  176 (204)
                      ...|+++|++|+++|+++.+.++++..                    ...++.|+  .+..++|+.|++.|++|+++++.
T Consensus        81 ~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~il~  160 (254)
T d1fx8a_          81 VIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILA  160 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999999999999999999997555543214432125775413222410068986546898889999999999999998


Q ss_pred             HCCCCCC--CCCCHHHHHHHHHHHHHHHC
Q ss_conf             5137776--68601789999999999643
Q 028768          177 VATDTKA--IGELAGIAVGSAVCITSVLA  203 (204)
Q Consensus       177 ~~~~~~~--~~~~~p~~iG~~v~~~~~~~  203 (204)
                      ++.++|+  .+...|+.||+.+.+.+...
T Consensus       161 ~~~~~~~~~~~~~~~l~iG~~v~~~~~~~  189 (254)
T d1fx8a_         161 LTDDGNGVPRGPLAPLLIGLLIAVIGASM  189 (254)
T ss_dssp             HHCTTSSSCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             70476677766666338999999998333
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure