Citrus Sinensis ID: 028777

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
MASENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE
cccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEcccccccHHHHccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccc
masensssmSSLASQICNQIASifskptaphpppldIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGisthlvfdmttppissndlliasagpggfstVDAICSRARSYGARVLLLtaqpesgssvkhasvvayvpaqtmaddddeqgkeksrplmpmgsvyEGAMFVLFEMVVYKLGealgqspeavrsrhtnle
masensssMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTaqpesgssvkHASVVAYVPAqtmaddddeqgkeKSRPLMPMGSVYEGAMFVLFEMVVYKLGEalgqspeavrsrhtnle
MAsensssmsslasQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE
***************ICNQIASIF**********LDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTA************VVAY*************************SVYEGAMFVLFEMVVYKLGEA****************
***************ICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDD********RPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNL*
*************SQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQ********HASVVAYVPAQTM************RPLMPMGSVYEGAMFVLFEMVVYKLGEAL***************
*ASENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQT*************RPLMPMGSVYEGAMFVLFEMVVYKLGEALG**************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query204 2.2.26 [Sep-21-2011]
Q9LBW5199 3-hexulose-6-phosphate is N/A no 0.955 0.979 0.333 2e-19
P42404185 3-hexulose-6-phosphate is yes no 0.720 0.794 0.346 4e-19
Q9YAK0212 Uncharacterized protein A yes no 0.931 0.896 0.297 2e-18
O26351197 Uncharacterized protein M yes no 0.764 0.791 0.318 7e-18
O28478183 Uncharacterized protein A yes no 0.784 0.874 0.289 7e-14
Q9S0X3181 3-hexulose-6-phosphate is N/A no 0.691 0.779 0.285 2e-13
Q58644180 3-hexulose-6-phosphate is yes no 0.720 0.816 0.253 2e-10
>sp|Q9LBW5|PHI_MYCGS 3-hexulose-6-phosphate isomerase OS=Mycobacterium gastri GN=rmpB PE=2 SV=1 Back     alignment and function desciption
 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 9/204 (4%)

Query: 2   ASENSSSMSSLASQICNQIASIFSKPTAPHPPPLD-IMVAELTNTATQKGSVFLYGVGRE 60
           A+E   ++  +   I N + S+     A     +D   VA L     Q G VF+ G GR 
Sbjct: 4   AAEADGAVKVVGDDITNNL-SLVRDEVADTAAKVDPEQVAVLARQIVQPGRVFVAGAGRS 62

Query: 61  GLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGAR 120
           GL+L+   MRL H G++ H+  D TTP IS+ DLL+ ++G G  S V      A+  GAR
Sbjct: 63  GLVLRMAAMRLMHFGLTVHVAGDTTTPAISAGDLLLVASGSGTTSGVVKSAETAKKAGAR 122

Query: 121 VLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEM 180
           +   T  P+S      A  V  +PA    D     G   SR     GS++E  +FV+ E 
Sbjct: 123 IAAFTTNPDS-PLAGLADAVVIIPAAQKTD----HGSHISRQY--AGSLFEQVLFVVTEA 175

Query: 181 VVYKLGEALGQSPEAVRSRHTNLE 204
           V   L +      E + +RH NLE
Sbjct: 176 VFQSLWDHTEVEAEELWTRHANLE 199
Catalyzes the isomerization between 3-hexulose 6-phosphate and fructose 6-phosphate.
Mycobacterium gastri (taxid: 1777)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 7
>sp|P42404|PHI_BACSU 3-hexulose-6-phosphate isomerase OS=Bacillus subtilis (strain 168) GN=hxlB PE=1 SV=1 Back     alignment and function description
>sp|Q9YAK0|Y1940_AERPE Uncharacterized protein APE_1940.1 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1940.1 PE=3 SV=2 Back     alignment and function description
>sp|O26351|Y249_METTH Uncharacterized protein MTH_249 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_249 PE=3 SV=1 Back     alignment and function description
>sp|O28478|Y1796_ARCFU Uncharacterized protein AF_1796 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1796 PE=1 SV=1 Back     alignment and function description
>sp|Q9S0X3|PHI_METAM 3-hexulose-6-phosphate isomerase OS=Methylomonas aminofaciens GN=rmpB PE=1 SV=1 Back     alignment and function description
>sp|Q58644|PHI_METJA 3-hexulose-6-phosphate isomerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=phi PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
255539497204 3-hexulose-6-phosphate isomerase, putati 1.0 1.0 0.803 4e-93
224134759198 predicted protein [Populus trichocarpa] 0.960 0.989 0.828 2e-88
356575947204 PREDICTED: 3-hexulose-6-phosphate isomer 1.0 1.0 0.769 5e-85
449446041201 PREDICTED: 3-hexulose-6-phosphate isomer 0.975 0.990 0.738 9e-83
356535887205 PREDICTED: 3-hexulose-6-phosphate isomer 1.0 0.995 0.731 2e-79
297796031208 sugar isomerase domain-containing protei 1.0 0.980 0.682 2e-78
15242294208 Sugar isomerase (SIS) family protein [Ar 1.0 0.980 0.673 1e-76
21553534208 unknown [Arabidopsis thaliana] 1.0 0.980 0.673 3e-76
225470704203 PREDICTED: 3-hexulose-6-phosphate isomer 0.990 0.995 0.682 8e-70
118484446144 unknown [Populus trichocarpa] 0.696 0.986 0.854 8e-62
>gi|255539497|ref|XP_002510813.1| 3-hexulose-6-phosphate isomerase, putative [Ricinus communis] gi|223549928|gb|EEF51415.1| 3-hexulose-6-phosphate isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  346 bits (887), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 164/204 (80%), Positives = 181/204 (88%)

Query: 1   MASENSSSMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGRE 60
           MA+E  SSM SLASQICN IASIFSKPT PHP PLD+MV  L+  A QKG VFLYGVGRE
Sbjct: 1   MATEAPSSMLSLASQICNHIASIFSKPTGPHPHPLDLMVTTLSTIAAQKGHVFLYGVGRE 60

Query: 61  GLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGAR 120
           GLMLKALCMRLAHLG++TH +FDMTTPPI+SNDLLIASAGPGGFSTVDA+CS ARSY A+
Sbjct: 61  GLMLKALCMRLAHLGLATHFIFDMTTPPITSNDLLIASAGPGGFSTVDALCSVARSYDAK 120

Query: 121 VLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEM 180
           VLLLTAQPE+GS VK ASVV YVPAQTMA+D D+  KE SRPL+PMGSVYEGA+FVLFEM
Sbjct: 121 VLLLTAQPETGSCVKQASVVCYVPAQTMANDRDDAEKENSRPLLPMGSVYEGALFVLFEM 180

Query: 181 VVYKLGEALGQSPEAVRSRHTNLE 204
           V+Y+LGE LGQSPEA+RSRHTNLE
Sbjct: 181 VIYRLGEVLGQSPEAIRSRHTNLE 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224134759|ref|XP_002321899.1| predicted protein [Populus trichocarpa] gi|222868895|gb|EEF06026.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575947|ref|XP_003556097.1| PREDICTED: 3-hexulose-6-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|449446041|ref|XP_004140780.1| PREDICTED: 3-hexulose-6-phosphate isomerase-like [Cucumis sativus] gi|449520108|ref|XP_004167076.1| PREDICTED: 3-hexulose-6-phosphate isomerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356535887|ref|XP_003536474.1| PREDICTED: 3-hexulose-6-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|297796031|ref|XP_002865900.1| sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311735|gb|EFH42159.1| sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15242294|ref|NP_200032.1| Sugar isomerase (SIS) family protein [Arabidopsis thaliana] gi|8885532|dbj|BAA97462.1| unnamed protein product [Arabidopsis thaliana] gi|88193812|gb|ABD42995.1| At5g52190 [Arabidopsis thaliana] gi|332008798|gb|AED96181.1| Sugar isomerase (SIS) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21553534|gb|AAM62627.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225470704|ref|XP_002263111.1| PREDICTED: 3-hexulose-6-phosphate isomerase [Vitis vinifera] gi|297741058|emb|CBI31789.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|118484446|gb|ABK94099.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
TAIR|locus:2145136208 AT5G52190 [Arabidopsis thalian 1.0 0.980 0.653 7.2e-68
UNIPROTKB|Q603R2389 MCA2738 "Putative hexulose-6-p 0.759 0.398 0.315 7.6e-14
TAIR|locus:2145136 AT5G52190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 136/208 (65%), Positives = 164/208 (78%)

Query:     1 MAXXXXXXXXXXXXQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGS--VFLYGVG 58
             MA            QICNQI+S+F+KPT+P+PPPLD++V ELT  +  + +  +FLYGVG
Sbjct:     1 MANEKAQEMANLSSQICNQISSVFTKPTSPYPPPLDLLVTELTAISRNRNNSRIFLYGVG 60

Query:    59 REGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYG 118
             REGLMLKA  MRL H G+ THLVFDMTTPPISS+DLLIASAGPGGFSTVDA+CS A+S G
Sbjct:    61 REGLMLKAFAMRLFHFGLPTHLVFDMTTPPISSSDLLIASAGPGGFSTVDALCSVAKSNG 120

Query:   119 ARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDD--EQGKEKSRPLMPMGSVYEGAMFV 176
             A+V+L+TA+P  GS VKHA+ V YVPAQTMA D+   +  +   R L+PMGSVYEGA+FV
Sbjct:   121 AKVILITAEPAIGSCVKHATDVCYVPAQTMASDNGGGDSVEMGERRLLPMGSVYEGALFV 180

Query:   177 LFEMVVYKLGEALGQSPEAVRSRHTNLE 204
             LFEMVVYKLGE LG+S E+VR+RHTNLE
Sbjct:   181 LFEMVVYKLGEVLGESSESVRARHTNLE 208
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0030246 "carbohydrate binding" evidence=IEA;ISS
UNIPROTKB|Q603R2 MCA2738 "Putative hexulose-6-phosphate synthase/SIS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
cd05005179 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase ( 8e-61
TIGR03127179 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase 8e-35
COG0794202 COG0794, GutQ, Predicted sugar phosphate isomerase 3e-30
COG1737281 COG1737, RpiR, Transcriptional regulators [Transcr 1e-05
cd05013139 cd05013, SIS_RpiR, RpiR-like protein 2e-05
pfam01380131 pfam01380, SIS, SIS domain 6e-04
>gnl|CDD|240138 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information 
 Score =  187 bits (477), Expect = 8e-61
 Identities = 67/189 (35%), Positives = 103/189 (54%), Gaps = 13/189 (6%)

Query: 13  ASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLA 72
            S I  +I ++  K        LD +++ + N       +F+YG GR GL+ KA  MRL 
Sbjct: 4   LSLILEEIENVADKIDEEE---LDKLISAILNA----KRIFVYGAGRSGLVAKAFAMRLM 56

Query: 73  HLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGS 132
           HLG++ ++V + TTP I   DLLIA +G G  S+V     +A+  GA+V+L+T+ P+S  
Sbjct: 57  HLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDS-P 115

Query: 133 SVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQS 192
             K A VV  +PA T  D   E      + + P+G+++E +  V  + V+ KL E LG S
Sbjct: 116 LAKLADVVVVIPAATKDDHGGE-----HKSIQPLGTLFEQSALVFLDAVIAKLMEELGVS 170

Query: 193 PEAVRSRHT 201
            E ++ RH 
Sbjct: 171 EEEMKKRHA 179

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI. Length = 179
>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase Back     alignment and domain information
>gnl|CDD|223865 COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription] Back     alignment and domain information
>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein Back     alignment and domain information
>gnl|CDD|216466 pfam01380, SIS, SIS domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 204
TIGR03127179 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of 100.0
cd05005179 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI 100.0
COG1737281 RpiR Transcriptional regulators [Transcription] 99.96
COG0794202 GutQ Predicted sugar phosphate isomerase involved 99.96
PRK15482285 transcriptional regulator MurR; Provisional 99.95
PRK11543 321 gutQ D-arabinose 5-phosphate isomerase; Provisiona 99.95
PRK11557278 putative DNA-binding transcriptional regulator; Pr 99.94
PRK11337292 DNA-binding transcriptional repressor RpiR; Provis 99.94
PRK10892 326 D-arabinose 5-phosphate isomerase; Provisional 99.94
PRK11302284 DNA-binding transcriptional regulator HexR; Provis 99.93
PRK14101638 bifunctional glucokinase/RpiR family transcription 99.9
TIGR00393 268 kpsF KpsF/GutQ family protein. This model describe 99.9
PRK02947246 hypothetical protein; Provisional 99.9
cd05014128 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5 99.9
cd05006177 SIS_GmhA Phosphoheptose isomerase is a member of t 99.89
PRK00414192 gmhA phosphoheptose isomerase; Reviewed 99.88
PRK13937188 phosphoheptose isomerase; Provisional 99.88
PRK13936197 phosphoheptose isomerase; Provisional 99.87
PRK13938196 phosphoheptose isomerase; Provisional 99.87
cd05013139 SIS_RpiR RpiR-like protein. RpiR contains a SIS (S 99.87
PRK10886196 DnaA initiator-associating protein DiaA; Provision 99.87
TIGR00441154 gmhA phosphoheptose isomerase. Involved in lipopol 99.87
cd05008126 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea 99.85
PF01380131 SIS: SIS domain SIS domain web page.; InterPro: IP 99.85
PRK05441299 murQ N-acetylmuramic acid-6-phosphate etherase; Re 99.84
cd05007257 SIS_Etherase N-acetylmuramic acid 6-phosphate ethe 99.84
cd05710120 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo 99.83
TIGR00274291 N-acetylmuramic acid 6-phosphate etherase. This pr 99.82
PRK11382 340 frlB fructoselysine-6-P-deglycase; Provisional 99.79
PRK12570296 N-acetylmuramic acid-6-phosphate etherase; Reviewe 99.78
COG4821243 Uncharacterized protein containing SIS (Sugar ISom 99.76
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 99.76
COG0279176 GmhA Phosphoheptose isomerase [Carbohydrate transp 99.75
TIGR01135 607 glmS glucosamine--fructose-6-phosphate aminotransf 99.73
PTZ00295 640 glucosamine-fructose-6-phosphate aminotransferase; 99.73
cd05017119 SIS_PGI_PMI_1 The members of this protein family c 99.72
PTZ00394 670 glucosamine-fructose-6-phosphate aminotransferase; 99.72
PLN02981 680 glucosamine:fructose-6-phosphate aminotransferase 99.69
PF13580138 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_ 99.68
cd05009153 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repea 99.67
COG2222 340 AgaS Predicted phosphosugar isomerases [Cell envel 99.64
PRK08674 337 bifunctional phosphoglucose/phosphomannose isomera 99.62
COG0449 597 GlmS Glucosamine 6-phosphate synthetase, contains 99.59
cd0479587 SIS SIS domain. SIS (Sugar ISomerase) domains are 99.54
TIGR02815 372 agaS_fam putative sugar isomerase, AgaS family. So 99.53
TIGR02128 308 G6PI_arch bifunctional phosphoglucose/phosphomanno 99.51
cd05015158 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains 99.44
COG2103298 Predicted sugar phosphate isomerase [General funct 99.4
PTZ00295640 glucosamine-fructose-6-phosphate aminotransferase; 99.28
KOG1268 670 consensus Glucosamine 6-phosphate synthetases, con 99.06
PRK03868 410 glucose-6-phosphate isomerase; Provisional 98.58
PF10740172 DUF2529: Protein of unknown function (DUF2529); In 98.52
PRK09533 948 bifunctional transaldolase/phosoglucose isomerase; 98.42
PRK00973 446 glucose-6-phosphate isomerase; Provisional 98.3
PRK14096 528 pgi glucose-6-phosphate isomerase; Provisional 98.27
TIGR01135607 glmS glucosamine--fructose-6-phosphate aminotransf 98.22
PTZ00394670 glucosamine-fructose-6-phosphate aminotransferase; 98.2
PRK14095 533 pgi glucose-6-phosphate isomerase; Provisional 98.08
PRK00331604 glucosamine--fructose-6-phosphate aminotransferase 98.04
COG0449597 GlmS Glucosamine 6-phosphate synthetase, contains 97.89
PLN02981680 glucosamine:fructose-6-phosphate aminotransferase 97.84
COG0166 446 Pgi Glucose-6-phosphate isomerase [Carbohydrate tr 97.77
PRK14097 448 pgi glucose-6-phosphate isomerase; Provisional 97.58
cd05010151 SIS_AgaS_like AgaS-like protein. AgaS contains a S 97.49
COG2222340 AgaS Predicted phosphosugar isomerases [Cell envel 97.37
PRK11382340 frlB fructoselysine-6-P-deglycase; Provisional 97.34
PRK00179 548 pgi glucose-6-phosphate isomerase; Reviewed 97.25
TIGR02815372 agaS_fam putative sugar isomerase, AgaS family. So 97.23
PLN02649 560 glucose-6-phosphate isomerase 97.07
PF00342 486 PGI: Phosphoglucose isomerase The structure is C a 96.95
TIGR01012196 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa 96.75
PTZ00254249 40S ribosomal protein SA; Provisional 96.71
PRK04020204 rps2P 30S ribosomal protein S2; Provisional 96.54
PTZ00430 552 glucose-6-phosphate isomerase; Provisional 96.43
cd02767 574 MopB_ydeP The MopB_ydeP CD includes a group of rel 95.83
PRK05299258 rpsB 30S ribosomal protein S2; Provisional 95.52
TIGR01701 743 Fdhalpha-like oxidoreductase alpha (molybdopterin) 94.94
PRK09939 759 putative oxidoreductase; Provisional 94.52
TIGR01553 1009 formate-DH-alph formate dehydrogenase, alpha subun 94.31
cd01425193 RPS2 Ribosomal protein S2 (RPS2), involved in form 93.92
CHL00067230 rps2 ribosomal protein S2 93.67
PRK12311326 rpsB 30S ribosomal protein S2/unknown domain fusio 93.62
TIGR01011225 rpsB_bact ribosomal protein S2, bacterial type. TI 93.56
TIGR00315162 cdhB CO dehydrogenase/acetyl-CoA synthase complex, 93.53
PF10432155 bact-PGI_C: Bacterial phospho-glucose isomerase C- 93.49
COG0052252 RpsB Ribosomal protein S2 [Translation, ribosomal 93.31
cd02759 477 MopB_Acetylene-hydratase The MopB_Acetylene-hydrat 93.02
KOG1268670 consensus Glucosamine 6-phosphate synthetases, con 92.69
cd02754 565 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA 92.48
cd02762 539 MopB_1 The MopB_1 CD includes a group of related u 92.29
PRK13532 830 nitrate reductase catalytic subunit; Provisional 92.15
PF00318211 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0 91.85
cd02750 461 MopB_Nitrate-R-NarG-like Respiratory nitrate reduc 91.69
cd02755 454 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik 91.55
TIGR01591 671 Fdh-alpha formate dehydrogenase, alpha subunit, ar 91.54
TIGR00288160 conserved hypothetical protein TIGR00288. This fam 91.41
cd02752 649 MopB_Formate-Dh-Na-like Formate dehydrogenase N, a 91.01
TIGR03479 912 DMSO_red_II_alp DMSO reductase family type II enzy 90.32
PF1008797 DUF2325: Uncharacterized protein conserved in bact 90.27
cd02753 512 MopB_Formate-Dh-H Formate dehydrogenase H (Formate 90.04
cd02766 501 MopB_3 The MopB_3 CD includes a group of related u 89.97
PF01936146 NYN: NYN domain; InterPro: IPR021139 This highly c 89.36
PRK06702 432 O-acetylhomoserine aminocarboxypropyltransferase; 88.19
PRK01710 458 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 87.95
cd01410206 SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla 87.86
PRK09004146 FMN-binding protein MioC; Provisional 87.74
TIGR0085395 pts-lac PTS system, lactose/cellobiose family IIB 87.69
cd02763 679 MopB_2 The MopB_2 CD includes a group of related u 87.46
cd02761 415 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the 87.31
TIGR01706 830 NAPA periplasmic nitrate reductase, large subunit. 86.91
cd02757 523 MopB_Arsenate-R This CD includes the respiratory a 86.9
cd02765 567 MopB_4 The MopB_4 CD includes a group of related u 86.77
cd06167149 LabA_like LabA_like proteins. A well conserved gro 86.47
cd02770 617 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D 86.38
PRK03806 438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 86.36
KOG0832251 consensus Mitochondrial/chloroplast ribosomal prot 85.98
TIGR00644 539 recJ single-stranded-DNA-specific exonuclease RecJ 85.84
PRK15488 759 thiosulfate reductase PhsA; Provisional 85.71
KOG2446 546 consensus Glucose-6-phosphate isomerase [Carbohydr 85.6
cd01409260 SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla 85.51
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 85.43
cd00368 374 Molybdopterin-Binding Molybdopterin-Binding (MopB) 84.99
cd01413222 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group 84.42
TIGR01973 603 NuoG NADH-quinone oxidoreductase, chain G. This mo 84.19
PTZ00409271 Sir2 (Silent Information Regulator) protein; Provi 84.0
COG2984322 ABC-type uncharacterized transport system, peripla 83.94
PRK08535310 translation initiation factor IF-2B subunit delta; 83.89
PRK09271160 flavodoxin; Provisional 83.39
cd02768 386 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo 83.22
PRK08114 395 cystathionine beta-lyase; Provisional 82.97
PF01053 386 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent 82.68
PRK14138244 NAD-dependent deacetylase; Provisional 82.64
TIGR03129 421 one_C_dehyd_B formylmethanofuran dehydrogenase sub 82.4
PRK02006 498 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 82.32
PRK01390 460 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 82.18
cd0556496 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic 81.99
cd0556599 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en 81.53
COG0626 396 MetC Cystathionine beta-lyases/cystathionine gamma 81.45
PRK06242150 flavodoxin; Provisional 81.24
PF06283217 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A. 80.79
TIGR02964246 xanthine_xdhC xanthine dehydrogenase accessory pro 80.6
COG4015217 Predicted dinucleotide-utilizing enzyme of the Thi 80.44
PRK00421 461 murC UDP-N-acetylmuramate--L-alanine ligase; Provi 80.44
PF13478136 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 80.04
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase Back     alignment and domain information 
Probab=100.00  E-value=1.9e-33  Score=219.06  Aligned_cols=177  Identities=34%  Similarity=0.563  Sum_probs=158.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecchhHHHHHHHHHHHhhcCCeEEEecCCCCCCCCCCcE
Q 028777           15 QICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDL   94 (204)
Q Consensus        15 ~~~~~i~~~~~~l~~~~~~~~~~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~~~~~~Dl   94 (204)
                      +..+.+.++++.++.+       +++++++.|.++++|+++|.|.|+.+|+++.++|.++|+++....|.....++++|+
T Consensus         3 ~~~~~l~~t~~~l~~~-------~~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv   75 (179)
T TIGR03127         3 LILDEISQVASRIDEE-------ELDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDL   75 (179)
T ss_pred             HHHHHHHHHHHhCCHH-------HHHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCE
Confidence            5678899999999988       999999999999999999999999999999999999999999998866678999999


Q ss_pred             EEEEeCCCCCHHHHHHHHHHHHcCCeEEEEecCCCCcchhhccCeEEEeCCccccCCCcccccCCCCCccccccHHHHHH
Q 028777           95 LIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYEGAM  174 (204)
Q Consensus        95 vI~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~~l~~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  174 (204)
                      +|++|.||++++++++++.||++|++||+||++++| |++++||++|.++..+......     ...+..|+.+.+....
T Consensus        76 ~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s-~la~~ad~~l~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~  149 (179)
T TIGR03127        76 LIAISGSGETESLVTVAKKAKEIGATVAAITTNPES-TLGKLADVVVEIPAATKKDSEG-----NYKSIQPLGSLFEQSL  149 (179)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC-chHHhCCEEEEeCCccccCCCC-----CccccCcCchHHHHHH
Confidence            999999999999999999999999999999999999 9999999999998765543210     1112456777665677


Q ss_pred             HHHHHHHHHHHHHHhCCChHHHHhhcCCCC
Q 028777          175 FVLFEMVVYKLGEALGQSPEAVRSRHTNLE  204 (204)
Q Consensus       175 ~~~ld~L~~~l~~~~g~~~~~~~~~~~~~~  204 (204)
                      ++++|+|+..++.+++.+.++++++|||+|
T Consensus       150 l~ild~l~~~~~~~~~~~~~~~~~~~~~~~  179 (179)
T TIGR03127       150 LLFLDAVILKLMKKKGLDEEEMKKRHANLE  179 (179)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHhccCC
Confidence            899999999999999999999999999998

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI) Back     alignment and domain information
>COG1737 RpiR Transcriptional regulators [Transcription] Back     alignment and domain information
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15482 transcriptional regulator MurR; Provisional Back     alignment and domain information
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PRK11557 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional Back     alignment and domain information
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional Back     alignment and domain information
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional Back     alignment and domain information
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional Back     alignment and domain information
>TIGR00393 kpsF KpsF/GutQ family protein Back     alignment and domain information
>PRK02947 hypothetical protein; Provisional Back     alignment and domain information
>cd05014 SIS_Kpsf KpsF-like protein Back     alignment and domain information
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily Back     alignment and domain information
>PRK00414 gmhA phosphoheptose isomerase; Reviewed Back     alignment and domain information
>PRK13937 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK13936 phosphoheptose isomerase; Provisional Back     alignment and domain information
>PRK13938 phosphoheptose isomerase; Provisional Back     alignment and domain information
>cd05013 SIS_RpiR RpiR-like protein Back     alignment and domain information
>PRK10886 DnaA initiator-associating protein DiaA; Provisional Back     alignment and domain information
>TIGR00441 gmhA phosphoheptose isomerase Back     alignment and domain information
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD) Back     alignment and domain information
>PF01380 SIS: SIS domain SIS domain web page Back     alignment and domain information
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>cd05710 SIS_1 A subgroup of the SIS domain Back     alignment and domain information
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase Back     alignment and domain information
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional Back     alignment and domain information
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed Back     alignment and domain information
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only] Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D Back     alignment and domain information
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD) Back     alignment and domain information
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd04795 SIS SIS domain Back     alignment and domain information
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family Back     alignment and domain information
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase Back     alignment and domain information
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains Back     alignment and domain information
>COG2103 Predicted sugar phosphate isomerase [General function prediction only] Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PRK03868 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales Back     alignment and domain information
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated Back     alignment and domain information
>PRK00973 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PRK14095 pgi glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>cd05010 SIS_AgaS_like AgaS-like protein Back     alignment and domain information
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional Back     alignment and domain information
>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed Back     alignment and domain information
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family Back     alignment and domain information
>PLN02649 glucose-6-phosphate isomerase Back     alignment and domain information
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment Back     alignment and domain information
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal) Back     alignment and domain information
>PTZ00254 40S ribosomal protein SA; Provisional Back     alignment and domain information
>PRK04020 rps2P 30S ribosomal protein S2; Provisional Back     alignment and domain information
>PTZ00430 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site Back     alignment and domain information
>PRK05299 rpsB 30S ribosomal protein S2; Provisional Back     alignment and domain information
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit Back     alignment and domain information
>PRK09939 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type Back     alignment and domain information
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome Back     alignment and domain information
>CHL00067 rps2 ribosomal protein S2 Back     alignment and domain information
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional Back     alignment and domain information
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type Back     alignment and domain information
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit Back     alignment and domain information
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways Back     alignment and domain information
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite Back     alignment and domain information
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site Back     alignment and domain information
>PRK13532 nitrate reductase catalytic subunit; Provisional Back     alignment and domain information
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins Back     alignment and domain information
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins Back     alignment and domain information
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type Back     alignment and domain information
>TIGR00288 conserved hypothetical protein TIGR00288 Back     alignment and domain information
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E Back     alignment and domain information
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons Back     alignment and domain information
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site Back     alignment and domain information
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function Back     alignment and domain information
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated Back     alignment and domain information
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PRK09004 FMN-binding protein MioC; Provisional Back     alignment and domain information
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component Back     alignment and domain information
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site Back     alignment and domain information
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins Back     alignment and domain information
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit Back     alignment and domain information
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins Back     alignment and domain information
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site Back     alignment and domain information
>cd06167 LabA_like LabA_like proteins Back     alignment and domain information
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes Back     alignment and domain information
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ Back     alignment and domain information
>PRK15488 thiosulfate reductase PhsA; Provisional Back     alignment and domain information
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor Back     alignment and domain information
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G Back     alignment and domain information
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK09271 flavodoxin; Provisional Back     alignment and domain information
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1) Back     alignment and domain information
>PRK08114 cystathionine beta-lyase; Provisional Back     alignment and domain information
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK14138 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B Back     alignment and domain information
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) Back     alignment and domain information
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria Back     alignment and domain information
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06242 flavodoxin; Provisional Back     alignment and domain information
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A Back     alignment and domain information
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC Back     alignment and domain information
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only] Back     alignment and domain information
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional Back     alignment and domain information
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1m3s_A186 Crystal Structure Of Yckf From Bacillus Subtilis Le 4e-20
1viv_A197 Crystal Structure Of A Hypothetical Protein Length 5e-20
1vim_A200 Crystal Structure Of An Hypothetical Protein Length 2e-14
1jeo_A180 Crystal Structure Of The Hypothetical Protein Mj124 3e-11
>pdb|1M3S|A Chain A, Crystal Structure Of Yckf From Bacillus Subtilis Length = 186 Back     alignment and structure 
Iteration: 1

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 52  VFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIASAGPGGFSTVDAIC 111
           +F  G GR GLM K+  MRL H+G + H+V ++ TPP++  DL+I  +G G   ++    
Sbjct: 40  IFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIGSGSGETKSLIHTA 99
Query: 112 SRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMGSVYE 171
           ++A+S    V  LT  PES S  K A ++  +P    +  D   G  K+  + PMGS++E
Sbjct: 100 AKAKSLHGIVAALTINPES-SIGKQADLIIRMPG---SPKDQSNGSYKT--IQPMGSLFE 153
Query: 172 GAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204
             + + ++ V+ KL E  G   E + + H NLE
Sbjct: 154 QTLLLFYDAVILKLMEKKGLDSETMFTHHANLE 186
>pdb|1VIV|A Chain A, Crystal Structure Of A Hypothetical Protein Length = 197 Back     alignment and structure
>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein Length = 200 Back     alignment and structure
>pdb|1JEO|A Chain A, Crystal Structure Of The Hypothetical Protein Mj1247 From Methanococcus Jannaschii At 2.0 A Resolution Infers A Molecular Function Of 3-Hexulose-6-Phosphate Isomerase Length = 180 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1m3s_A186 Hypothetical protein YCKF; structural genomics, PS 1e-46
1jeo_A180 MJ1247, hypothetical protein MJ1247; RUMP pathway, 7e-37
1vim_A200 Hypothetical protein AF1796; structural genomics, 3e-33
3cvj_A243 Putative phosphoheptose isomerase; rossman fold, 3 4e-04
3sho_A187 Transcriptional regulator, RPIR family; structural 5e-04
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Length = 186 Back     alignment and structure
 Score =  150 bits (382), Expect = 1e-46
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 39  VAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIAS 98
             +L +       +F  G GR GLM K+  MRL H+G + H+V ++ TPP++  DL+I  
Sbjct: 27  ADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIG 86

Query: 99  AGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKE 158
           +G G   ++    ++A+S    V  LT  PES S  K A ++  +P       +      
Sbjct: 87  SGSGETKSLIHTAAKAKSLHGIVAALTINPES-SIGKQADLIIRMPGSPKDQSNGS---- 141

Query: 159 KSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204
             + + PMGS++E  + + ++ V+ KL E  G   E + + H NLE
Sbjct: 142 -YKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANLE 186
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Length = 180 Back     alignment and structure
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Length = 200 Back     alignment and structure
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Length = 243 Back     alignment and structure
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Length = 187 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 204
d1m3sa_186 c.80.1.3 (A:) Hypothetical protein YckF {Bacillus 2e-24
d1jeoa_177 c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isom 3e-16
d1vima_192 c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeo 3e-10
d1x9ia_ 300 c.80.1.1 (A:) Glucose-6-phosphate isomerase, conje 0.001
d1jnra2 356 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct 0.004
d1y0pa2 308 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( 0.004
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Length = 186 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

 Score = 92.6 bits (229), Expect = 2e-24
 Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 6/166 (3%)

Query: 39  VAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTPPISSNDLLIAS 98
             +L +       +F  G GR GLM K+  MRL H+G + H+V ++ TPP++  DL+I  
Sbjct: 27  ADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEGDLVIIG 86

Query: 99  AGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKE 158
           +G G   ++    ++A+S    V  LT  PES S  K A ++  +P       +      
Sbjct: 87  SGSGETKSLIHTAAKAKSLHGIVAALTINPES-SIGKQADLIIRMPGSPKDQSNGSYK-- 143

Query: 159 KSRPLMPMGSVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE 204
               + PMGS++E  + + ++ V+ KL E  G   E + + H NLE
Sbjct: 144 ---TIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANLE 186
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 177 Back     information, alignment and structure
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192 Back     information, alignment and structure
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 300 Back     information, alignment and structure
>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 Back     information, alignment and structure
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
d1m3sa_186 Hypothetical protein YckF {Bacillus subtilis [TaxI 100.0
d1vima_192 Hypothetical protein AF1796 {Archaeon Archaeoglobu 100.0
d1jeoa_177 Probable 3-hexulose-6-phosphate isomerase MJ1247 { 99.96
d1x94a_191 Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T 99.79
d1tk9a_188 Phosphoheptose isomerase GmhA1 {Campylobacter jeju 99.71
d1j5xa_ 329 Hypothetical protein TM0813 {Thermotoga maritima [ 99.7
d1nria_248 Hypothetical protein HI0754 {Haemophilus influenza 99.67
d1x92a_194 Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi 99.67
d1moqa_ 366 "Isomerase domain" of glucosamine 6-phosphate synt 99.62
d1x9ia_ 300 Glucose-6-phosphate isomerase, conjectural {Archae 99.39
d1moqa_366 "Isomerase domain" of glucosamine 6-phosphate synt 98.38
d1c7qa_ 442 Phosphoglucose isomerase, PGI {Bacillus stearother 97.62
d1j5xa_329 Hypothetical protein TM0813 {Thermotoga maritima [ 97.08
d1q50a_ 561 Phosphoglucose isomerase, PGI {Leishmania mexicana 96.44
d1iata_ 556 Phosphoglucose isomerase, PGI {Human (Homo sapiens 96.42
d1vi6a_193 Ribosomal protein S2 {Archaeon Archaeoglobus fulgi 93.92
d1p3da196 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 92.24
d1ogya2 670 Periplasmic nitrate reductase alpha chain {Rhodoba 91.63
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 90.76
d1j6ua189 UDP-N-acetylmuramate-alanine ligase MurC {Thermoto 86.72
d2jioa2 597 Periplasmic nitrate reductase alpha chain {Desulfo 85.65
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=9.9e-33  Score=212.23  Aligned_cols=184  Identities=29%  Similarity=0.507  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             59999999999999886398999999989999999999834992999940511999999999996169757983688899
Q 028777            8 SMSSLASQICNQIASIFSKPTAPHPPPLDIMVAELTNTATQKGSVFLYGVGREGLMLKALCMRLAHLGISTHLVFDMTTP   87 (204)
Q Consensus         8 ~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~   87 (204)
                      ...++++.+.++++++.+.++.+       +++++++.|.++++|+++|.|.|+.+|++|+++|.++|+++.+.+|...+
T Consensus         3 ~~~e~~~~~~~~i~~t~~~i~~~-------~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~~~~   75 (186)
T d1m3sa_           3 KTTEYVAEILNELHNSAAYISNE-------EADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTP   75 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCHH-------HHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHCC
T ss_conf             78999999999999999855999-------99999999972995999978689999999999987356777767854435


Q ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999489998299998899999999988699299980589986411105968990884356997535657899865664
Q 028777           88 PISSNDLLIASAGPGGFSTVDAICSRARSYGARVLLLTAQPESGSSVKHASVVAYVPAQTMADDDDEQGKEKSRPLMPMG  167 (204)
Q Consensus        88 ~~~~~DlvI~iS~sG~~~~~~~~~~~a~~~g~~iI~IT~~~~s~~l~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (204)
                      .++++|++|++|.||++++++++++.||++|+++|+||++++| ||+++||++|.+|+.++....     +...++.|++
T Consensus        76 ~~~~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s-~La~~ad~~i~i~~~~~~~~~-----~~~~s~~~~~  149 (186)
T d1m3sa_          76 PLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPES-SIGKQADLIIRMPGSPKDQSN-----GSYKTIQPMG  149 (186)
T ss_dssp             CCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTS-HHHHHCSEEEECSCCSCC----------CCCCSSTT
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHCCEEEEECCCCCCCCC-----CCCCCCCCCH
T ss_conf             6888878998467410032389999999879978999558874-556758888996787634667-----7754527303


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf             2899999999999999999991999689984147899
Q 028777          168 SVYEGAMFVLFEMVVYKLGEALGQSPEAVRSRHTNLE  204 (204)
Q Consensus       168 s~~~~~~~~~~d~l~~~l~~~~g~~~~~~~~~~~~~~  204 (204)
                      +.+++..++++|.++..++++.|.+++.++++|.++|
T Consensus       150 s~~~~~~~~~~d~l~~~l~~~~~~~~~~~~~~H~n~e  186 (186)
T d1m3sa_         150 SLFEQTLLLFYDAVILKLMEKKGLDSETMFTHHANLE  186 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCTTTCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf             8999999999999999999994969999999853269
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]} Back     information, alignment and structure